Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ADAM30 11085 hgsc.bcm.edu hg19 1 120438417 120438417 + Missense_Mutation SNP C C G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ADAM30 NM_021794 exon1 c.G543C p.W181C CATCTGCCATTCT . 90.0 4.0 54.0 0.0 . 88 . . Atlas-SNP FLG2 388698 hgsc.bcm.edu hg19 1 152328831 152328831 + Silent SNP A A G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . FLG2 NM_001014342 exon3 c.T1431C p.S477S AAAGCCAGATGTC . 212.0 9.0 105.0 0.0 . 431 . . Atlas-SNP CHTOP 26097 hgsc.bcm.edu hg19 1 153617713 153617713 + Missense_Mutation SNP A A G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . CHTOP NM_001206612 exon6 c.A718G p.M240V GCCTACATGGCGC . 166.0 7.0 57.0 0.0 . 34 . . Atlas-SNP GBA 2629 hgsc.bcm.edu hg19 1 155208419 155208419 + Silent SNP C C T rs75249684 bycluster;alternate_allele TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . GBA NM_001005742 exon6 c.G477A p.R159R GGGTACCCGGATG . 649.0 59.0 272.0 0.0 . 46 . . Atlas-SNP PKLR 5313 hgsc.bcm.edu hg19 1 155264423 155264423 + Missense_Mutation SNP A A G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . PKLR NM_000298 exon6 c.T815C p.L272P AAGCGCAGGTCTC . 180.0 75.0 72.0 0.0 . 70 . . Atlas-SNP OR10X1 128367 hgsc.bcm.edu hg19 1 158548821 158548821 + Missense_Mutation SNP G G A rs150430213 TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . OR10X1 NM_001004477 exon1 c.C869T p.P290L GTATAAGGGACTG . 193.0 44.0 97.0 0.0 . 96 . G|1.000;A|0.000 Atlas-SNP PAPPA2 60676 hgsc.bcm.edu hg19 1 176563717 176563717 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . PAPPA2 NM_021936 exon3 c.G977A p.R326H GGATCCGCTCAGG . 152.0 39.0 78.0 0.0 . 665 . . Atlas-SNP IPO9 55705 hgsc.bcm.edu hg19 1 201839912 201839912 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . IPO9 NM_018085 exon18 c.G2335A p.G779R GAACTCGGGGAGA . 108.0 6.0 37.0 0.0 . 98 . . Atlas-SNP BROX 148362 hgsc.bcm.edu hg19 1 222900566 222900566 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . BROX NM_144695 exon8 c.G637A p.A213T GCACTGGCGTATG . 344.0 15.0 148.0 0.0 . 45 . . Atlas-SNP PCNXL2 80003 hgsc.bcm.edu hg19 1 233394789 233394789 + Missense_Mutation SNP G G C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . PCNXL2 NM_014801 exon5 c.C819G p.F273L CGGCTGGAAAGAA . 202.0 39.0 72.0 0.0 . 204 . . Atlas-SNP OR14A16 284532 hgsc.bcm.edu hg19 1 247978806 247978806 + Missense_Mutation SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 OR14A16,NS,carcinoma,0,1 OR14A16 NM_001001966 exon1 c.G226A p.A76T TGGGAGCCGTGAC . 404.0 45.0 186.0 0.0 . 90 . . Atlas-SNP SPAST 6683 hgsc.bcm.edu hg19 2 32289153 32289153 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . SPAST NM_199436 exon1 c.G253A p.A85T TCCCGCGCCCTCA . 713.0 124.0 553.0 0.0 . 61 . . Atlas-SNP SOS1 6654 hgsc.bcm.edu hg19 2 39250269 39250269 + Missense_Mutation SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 SOS1,scalp,malignant_melanoma,+1,1 SOS1 NM_005633 exon10 c.G1300A p.G434R CTTTTCCCTCCCA . 83.0 25.0 63.0 0.0 . 134 . . Atlas-SNP DYSF 8291 hgsc.bcm.edu hg19 2 71839841 71839841 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 DYSF_ENST00000410020,NS,carcinoma,0,2 DYSF NM_001130982 exon40 c.G4334A p.R1445H TTGGCCGCCGGCC . 199.0 56.0 143.0 0.0 . 536 . . Atlas-SNP ST6GAL2 84620 hgsc.bcm.edu hg19 2 107450508 107450508 + Silent SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ST6GAL2 NM_032528 exon3 c.G1038A p.S346S TACCTGCGAATTA . 99.0 30.0 68.0 0.0 . 159 . . Atlas-SNP SH3RF3 344558 hgsc.bcm.edu hg19 2 109964272 109964272 + Missense_Mutation SNP C C A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . SH3RF3 NM_001099289 exon2 c.C716A p.T239K ACGGCACACAGGG . 164.0 13.0 124.0 0.0 . 62 . . Atlas-SNP METAP1D 254042 hgsc.bcm.edu hg19 2 172930371 172930371 + Missense_Mutation SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . METAP1D NM_199227 exon4 c.C388T p.R130W GTTCATCGGGAAA . 89.0 6.0 68.0 0.0 . 32 . . Atlas-SNP HECW2 57520 hgsc.bcm.edu hg19 2 197066049 197066049 + Missense_Mutation SNP T T A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . HECW2 NM_020760 exon29 c.A4671T p.E1557D CAGTTTTTCATAA . 92.0 24.0 95.0 0.0 . 239 . . Atlas-SNP SLC16A14 151473 hgsc.bcm.edu hg19 2 230914607 230914607 + Silent SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . SLC16A14 NM_152527 exon3 c.C273T p.G91G GAACAAGCCGATG . 300.0 101.0 238.0 0.0 . 75 . . Atlas-SNP NGEF 25791 hgsc.bcm.edu hg19 2 233785159 233785159 + Silent SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 NGEF_ENST00000264051,NS,carcinoma,0,7 NGEF NM_019850 exon5 c.G663A p.E221E CTCCTCCTCTTCT . 74.0 4.0 39.0 0.0 . 198 . . Atlas-SNP FBLN2 2199 hgsc.bcm.edu hg19 3 13612701 13612701 + Silent SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . FBLN2 NM_001998 exon2 c.G846A p.E282E AGAAGAGGAGGAG . 111.0 5.0 83.0 0.0 . 137 . . Atlas-SNP COLQ 8292 hgsc.bcm.edu hg19 3 15498035 15498035 + Missense_Mutation SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . COLQ NM_005677 exon14 c.G1006A p.A336T CAATGGCGTTTTG . 55.0 15.0 28.0 0.0 . 82 . . Atlas-SNP GADL1 339896 hgsc.bcm.edu hg19 3 30842571 30842571 + Nonsense_Mutation SNP T T A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . GADL1 NM_207359 exon12 c.A1060T p.K354X ATTTTTTAAGAAG . 85.0 29.0 58.0 0.0 . 91 . . Atlas-SNP RASSF1 11186 hgsc.bcm.edu hg19 3 50374725 50374725 + Missense_Mutation SNP A A C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . RASSF1 NM_170713 exon1 c.T26G p.F9C ATTTCGAAAGAAG . 56.0 20.0 53.0 0.0 . 46 . . Atlas-SNP APPL1 26060 hgsc.bcm.edu hg19 3 57282311 57282311 + Silent SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . APPL1 NM_012096 exon10 c.C795T p.D265D GCCTGACCCAGAC . 181.0 33.0 151.0 0.0 . 59 . . Atlas-SNP CCNL1 57018 hgsc.bcm.edu hg19 3 156876717 156876717 + Silent SNP T T C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . CCNL1 NM_020307 exon3 c.A426G p.A142A TCTAGGTGCTTCT . 72.0 7.0 45.0 0.0 . 53 . . Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178952085 178952085 + Missense_Mutation SNP A A G rs121913279 bycluster TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 PIK3CA_ENST00000263967,NS,adenocarcinoma,0,2044 PIK3CA NM_006218 exon21 c.A3140G p.H1047R ATGCACATCATGG . 128.0 10.0 128.0 0.0 . 8460 . . Atlas-SNP STK32B 55351 hgsc.bcm.edu hg19 4 5333066 5333066 + Missense_Mutation SNP T T G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . STK32B NM_018401 exon4 c.T380G p.I127S TCTACATCTGTGA . 66.0 30.0 48.0 0.0 . 87 . . Atlas-SNP GRXCR1 389207 hgsc.bcm.edu hg19 4 42895607 42895607 + Silent SNP C C A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . GRXCR1 NM_001080476 exon1 c.C324A p.G108G CAGAGGCGTCAAA . 72.0 6.0 65.0 0.0 . 78 . . Atlas-SNP GRXCR1 389207 hgsc.bcm.edu hg19 4 42964912 42964912 + Missense_Mutation SNP C C A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . GRXCR1 NM_001080476 exon2 c.C388A p.P130T CAGCAACCATCAA . 131.0 49.0 101.0 0.0 . 78 . . Atlas-SNP LRRC66 339977 hgsc.bcm.edu hg19 4 52883570 52883570 + Silent SNP A A G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . LRRC66 NM_001024611 exon1 c.T210C p.N70N AAAGAAATTGAAA . 144.0 59.0 92.0 0.0 . 128 . . Atlas-SNP MANBA 4126 hgsc.bcm.edu hg19 4 103561007 103561007 + Missense_Mutation SNP T T A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . MANBA NM_005908 exon14 c.A1877T p.Q626L TGGGCCTGCATCA . 81.0 13.0 78.0 0.0 . 78 . . Atlas-SNP TRIM2 23321 hgsc.bcm.edu hg19 4 154191666 154191666 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . TRIM2 NM_015271 exon2 c.C210A p.C70X TTTCTGCGAGAGG . 97.0 62.0 104.0 0.0 . 105 . . Atlas-SNP IRF2 3660 hgsc.bcm.edu hg19 4 185339806 185339806 + Missense_Mutation SNP T T C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . IRF2 NM_002199 exon4 c.A244G p.R82G CGCATCTGAAATT . 59.0 22.0 76.0 0.0 . 53 . . Atlas-SNP KIAA0947 23379 hgsc.bcm.edu hg19 5 5463105 5463105 + Nonsense_Mutation SNP A A T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . KIAA0947 NM_015325 exon13 c.A3658T p.R1220X AAATACAGAAAGC . 146.0 44.0 151.0 0.0 . 301 . . Atlas-SNP ZNF131 7690 hgsc.bcm.edu hg19 5 43139306 43139306 + Missense_Mutation SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ZNF131 NM_003432 exon4 c.C266T p.T89I AGTTCACATATAC . 122.0 5.0 142.0 0.0 . 51 . . Atlas-SNP SKIV2L2 23517 hgsc.bcm.edu hg19 5 54640445 54640445 + Silent SNP A A G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . SKIV2L2 NM_015360 exon9 c.A1002G p.E334E TGATGAAAATGTA . 258.0 15.0 203.0 0.0 . 104 . . Atlas-SNP DDX4 54514 hgsc.bcm.edu hg19 5 55082361 55082361 + Missense_Mutation SNP A A G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . DDX4 NM_024415 exon14 c.A880G p.N294D GAAGCTAATCTCT . 110.0 31.0 98.0 0.0 . 194 . . Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127668623 127668623 + Silent SNP T T C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . FBN2 NM_001999 exon32 c.A4203G p.G1401G GCCGTTTCCAATC . 174.0 51.0 158.0 0.0 . 858 . . Atlas-SNP SLC4A9 83697 hgsc.bcm.edu hg19 5 139743132 139743132 + Silent SNP G G T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . SLC4A9 NM_001258428 exon8 c.G1143T p.R381R GCAGCGGACCGGC . 122.0 14.0 83.0 0.0 . 125 . . Atlas-SNP PDGFRB 5159 hgsc.bcm.edu hg19 5 149515368 149515368 + Silent SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . PDGFRB NM_002609 exon3 c.G114A p.P38P TGGCCCCGGGGGT . 184.0 37.0 100.0 0.0 . 142 . . Atlas-SNP C1QTNF2 114898 hgsc.bcm.edu hg19 5 159776448 159776448 + Silent SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . C1QTNF2 NM_031908 exon3 c.C720T p.Y240Y GAAGTAGTAGATC . 74.0 8.0 43.0 0.0 . 33 . . Atlas-SNP COL23A1 91522 hgsc.bcm.edu hg19 5 177695729 177695729 + Splice_Site SNP A A G rs200266099 TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . COL23A1 NM_173465 exon8 c.495+2T>C . TCACTTACCTTTT . 62.0 21.0 29.0 0.0 . 47 . A|0.999;G|0.001 Atlas-SNP SLC17A3 10786 hgsc.bcm.edu hg19 6 25849672 25849672 + Missense_Mutation SNP C C G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . SLC17A3 NM_001098486 exon11 c.G1292C p.G431A GATGCTCCCATGA . 132.0 46.0 84.0 0.0 . 95 . . Atlas-SNP HIST1H3B 8358 hgsc.bcm.edu hg19 6 26032006 26032006 + Missense_Mutation SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 HIST1H3B,NS,carcinoma,0,1 HIST1H3B NM_003537 exon1 c.G283A p.E95K AAGCCTCCTGCAG . 89.0 31.0 82.0 0.0 . 59 . . Atlas-SNP LEMD2 221496 hgsc.bcm.edu hg19 6 33748859 33748859 + Missense_Mutation SNP T T C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . LEMD2 NM_181336 exon4 c.A925G p.I309V CGGCTATATATTC . 68.0 26.0 30.0 0.0 . 20 . . Atlas-SNP SEC63 11231 hgsc.bcm.edu hg19 6 108214765 108214765 + Nonsense_Mutation SNP A A T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 SEC63,NS,carcinoma,0,2 SEC63 NM_007214 exon16 c.T1595A p.L532X TTTTTTAAAGGTT . 92.0 8.0 61.0 0.0 . 79 . . Atlas-SNP FABP7 2173 hgsc.bcm.edu hg19 6 123101529 123101529 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . FABP7 NM_001446 exon2 c.G167A p.S56N CTCTCAGCACATT . 272.0 89.0 185.0 0.0 . 10 . . Atlas-SNP STXBP5 134957 hgsc.bcm.edu hg19 6 147646126 147646126 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . STXBP5 NM_139244 exon17 c.G1834A p.G612S TCTCCAGGTTATC . 465.0 37.0 333.0 0.0 . 163 . . Atlas-SNP MAP3K4 4216 hgsc.bcm.edu hg19 6 161494612 161494612 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . MAP3K4 NM_006724 exon5 c.G2065A p.A689T ATTGACGCTTTTG . 113.0 32.0 107.0 0.0 . 364 . . Atlas-SNP ZNF716 441234 hgsc.bcm.edu hg19 7 57529086 57529086 + Missense_Mutation SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ZNF716 NM_001159279 exon4 c.C919T p.R307C TTTAGCCGCTCTT . 74.0 24.0 60.0 0.0 . 207 . . Atlas-SNP PHTF2 57157 hgsc.bcm.edu hg19 7 77579094 77579094 + Missense_Mutation SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 PHTF2_ENST00000416283,NS,carcinoma,0,2 PHTF2 NM_001127357 exon15 c.C1957T p.L653F GTTACCCTTGGAT . 113.0 38.0 89.0 0.0 . 104 . . Atlas-SNP NRCAM 4897 hgsc.bcm.edu hg19 7 107808806 107808806 + Missense_Mutation SNP C C A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . NRCAM NM_001037132 exon26 c.G3229T p.A1077S CAGCAGCTGCAGC . 84.0 32.0 71.0 0.0 . 267 . . Atlas-SNP OR2F1 26211 hgsc.bcm.edu hg19 7 143657530 143657530 + Missense_Mutation SNP C C G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 OR2F1,right_upper_lobe,carcinoma,0,2 OR2F1 NM_012369 exon1 c.C467G p.S156C TCAGCTCTCCTGT . 137.0 45.0 104.0 0.0 . 71 . . Atlas-SNP TMUB1 83590 hgsc.bcm.edu hg19 7 150778970 150778970 + Missense_Mutation SNP C C G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . TMUB1 NM_031434 exon3 c.G407C p.R136P TGTTCCCGGCCGG . 27.0 7.0 25.0 0.0 . 7 . . Atlas-SNP TMUB1 83590 hgsc.bcm.edu hg19 7 150778972 150778972 + Silent SNP G G T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . TMUB1 NM_031434 exon3 c.C405A p.G135G TTCCCGGCCGGGA . 27.0 7.0 26.0 0.0 . 7 . . Atlas-SNP ADAM2 2515 hgsc.bcm.edu hg19 8 39607233 39607233 + Missense_Mutation SNP A A T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ADAM2 NM_001464 exon17 c.T1828A p.S610T AGTATGAAGAACT . 182.0 31.0 170.0 0.0 . 124 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113403006 113403006 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . CSMD3 NM_198123 exon36 c.G5821T p.G1941X AAATTCCACCACA . 149.0 38.0 69.0 0.0 . 2325 . . Atlas-SNP SLC30A8 169026 hgsc.bcm.edu hg19 8 118174119 118174119 + Missense_Mutation SNP T T A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . SLC30A8 NM_173851 exon5 c.T715A p.Y239N ATTATCTACTTTA . 163.0 20.0 76.0 0.0 . 102 . . Atlas-SNP COL22A1 169044 hgsc.bcm.edu hg19 8 139696713 139696713 + Splice_Site SNP C C A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . COL22A1 NM_152888 exon40 c.2968-1G>T . GAGTCCCTGGAGA . 141.0 34.0 91.0 0.0 . 390 . . Atlas-SNP FRMPD1 22844 hgsc.bcm.edu hg19 9 37745441 37745441 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . FRMPD1 NM_014907 exon16 c.G3412A p.G1138S TCCCCGGGTGATG . 110.0 36.0 86.0 0.0 . 237 . . Atlas-SNP PTPDC1 138639 hgsc.bcm.edu hg19 9 96864001 96864001 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 PTPDC1_ENST00000375360,NS,carcinoma,0,2 PTPDC1 NM_001253829 exon7 c.G2167A p.D723N CGAGCAGATGCCG . 173.0 27.0 121.0 1.0 . 134 . . Atlas-SNP GALNT12 79695 hgsc.bcm.edu hg19 9 101570305 101570305 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . GALNT12 NM_024642 exon1 c.G325A p.D109N CTCAGCGACCGCA . 64.0 20.0 30.0 0.0 . 37 . . Atlas-SNP GALNT12 79695 hgsc.bcm.edu hg19 9 101597550 101597550 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . GALNT12 NM_024642 exon5 c.G937A p.G313R GCTGGTGGGCTGT . 119.0 41.0 88.0 0.0 . 37 . . Atlas-SNP LCN9 392399 hgsc.bcm.edu hg19 9 138556630 138556630 + Missense_Mutation SNP A A G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . LCN9 NM_001001676 exon3 c.A296G p.Y99C GGGAATACTCCAT . 108.0 7.0 65.0 0.0 . 42 . . Atlas-SNP PTPLA 9200 hgsc.bcm.edu hg19 10 17645602 17645602 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . PTPLA NM_014241 exon4 c.C440T p.S147L ATTCTTGAACTCA . 308.0 100.0 183.0 0.0 . 34 . . Atlas-SNP MYO3A 53904 hgsc.bcm.edu hg19 10 26446396 26446396 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 MYO3A,NS,carcinoma,0,1 MYO3A NM_017433 exon26 c.G2951A p.R984Q GAATTCGAAGACT . 130.0 15.0 86.0 1.0 . 371 . . Atlas-SNP CDH23 64072 hgsc.bcm.edu hg19 10 73560411 73560411 + Missense_Mutation SNP T T C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . CDH23 NM_022124 exon51 c.T7381C p.S2461P GTGCTGTCTTCTC . 79.0 28.0 55.0 0.0 . 365 . . Atlas-SNP SLIT1 6585 hgsc.bcm.edu hg19 10 98762647 98762647 + Missense_Mutation SNP A A T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . SLIT1 NM_003061 exon35 c.T3968A p.L1323Q TCCTGCAGCTCGT . 130.0 54.0 118.0 0.0 . 154 . . Atlas-SNP MMP21 118856 hgsc.bcm.edu hg19 10 127460888 127460888 + Missense_Mutation SNP T T C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . MMP21 NM_147191 exon4 c.A878G p.H293R TAGGTGTGAGGCA . 87.0 26.0 65.0 0.0 . 46 . . Atlas-SNP MUC5B 727897 hgsc.bcm.edu hg19 11 1258280 1258280 + Silent SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . MUC5B NM_002458 exon25 c.C3183T p.C1061C CTCCTGCCCGGAC . 96.0 19.0 80.0 0.0 . 473 . . Atlas-SNP IPO7 10527 hgsc.bcm.edu hg19 11 9446761 9446761 + Missense_Mutation SNP A A C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . IPO7 NM_006391 exon12 c.A1287C p.K429N AAAAAAAGATGGA . 101.0 6.0 98.0 0.0 . 72 . . Atlas-SNP TTC17 55761 hgsc.bcm.edu hg19 11 43421488 43421488 + Missense_Mutation SNP A A T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . TTC17 NM_018259 exon9 c.A1109T p.D370V AGCATGACCACTA . 406.0 27.0 280.0 0.0 . 112 . . Atlas-SNP SERPINH1 871 hgsc.bcm.edu hg19 11 75280184 75280184 + Missense_Mutation SNP A A G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . SERPINH1 NM_001207014 exon5 c.A922G p.K308E TTGCCCAAGGGTG . 118.0 11.0 72.0 0.0 . 33 . . Atlas-SNP KIAA1377 57562 hgsc.bcm.edu hg19 11 101863554 101863554 + Nonsense_Mutation SNP T T A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . KIAA1377 NM_020802 exon10 c.T3290A p.L1097X ATACTTTACAAAT . 378.0 111.0 273.0 0.0 . 111 . . Atlas-SNP MLL 4297 hgsc.bcm.edu hg19 11 118347552 118347552 + Silent SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . MLL NM_001197104 exon4 c.G3189A p.V1063V CTCTGTGCGAGGA . 155.0 8.0 84.0 0.0 . 548 . . Atlas-SNP KCNA6 3742 hgsc.bcm.edu hg19 12 4920420 4920420 + Missense_Mutation SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . KCNA6 NM_002235 exon1 c.C1213T p.L405F GATTCGCTTTTTC . 141.0 25.0 103.0 0.0 . 122 . . Atlas-SNP ARID2 196528 hgsc.bcm.edu hg19 12 46244283 46244283 + Missense_Mutation SNP C C A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ARID2 NM_152641 exon15 c.C2377A p.Q793K GTAATTCAACAAG . 96.0 27.0 82.0 0.0 . 311 . . Atlas-SNP ARHGAP9 64333 hgsc.bcm.edu hg19 12 57871256 57871256 + Missense_Mutation SNP T T A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ARHGAP9 NM_001080157 exon3 c.A742T p.S248C TGCGACTGCGGCG . 186.0 60.0 108.0 0.0 . 79 . . Atlas-SNP MARS 4141 hgsc.bcm.edu hg19 12 57892224 57892224 + Missense_Mutation SNP G G C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . MARS NM_004990 exon9 c.G909C p.W303C CCAGTGGAACACC . 100.0 36.0 68.0 0.0 . 84 . . Atlas-SNP ANKRD13A 88455 hgsc.bcm.edu hg19 12 110437503 110437503 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ANKRD13A NM_033121 exon1 c.G10A p.A4T TCCTCGGCCTGCG . 112.0 11.0 89.0 0.0 . 39 . . Atlas-SNP HCAR1 27198 hgsc.bcm.edu hg19 12 123214615 123214615 + Missense_Mutation SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . HCAR1 NM_032554 exon1 c.G272A p.G91E AAGAGCCCCACTC . 92.0 34.0 66.0 0.0 . 21 . . Atlas-SNP PSPC1 55269 hgsc.bcm.edu hg19 13 20346623 20346623 + Silent SNP T T G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . PSPC1 NM_001042414 exon3 c.A433C p.R145R GAGGTCTGCTCTT . 86.0 9.0 64.0 0.0 . 61 . . Atlas-SNP ZMYM2 7750 hgsc.bcm.edu hg19 13 20605572 20605572 + Nonsense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ZMYM2 NM_001190964 exon11 c.G1965A p.W655X GGAATGGGAGGCA . 131.0 39.0 103.0 0.0 . 191 . . Atlas-SNP FAM194B 220081 hgsc.bcm.edu hg19 13 46161363 46161363 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . FAM194B NM_182542 exon5 c.C691T p.P231S CGTCTGGACTCCT . 94.0 14.0 71.0 0.0 . 42 . . Atlas-SNP PML 5371 hgsc.bcm.edu hg19 15 74324992 74324992 + Nonsense_Mutation SNP C C G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . PML NM_033244 exon5 c.C1334G p.S445X TACAGTCAGTGCC . 247.0 94.0 173.0 0.0 . 169 . . Atlas-SNP CCDC33 80125 hgsc.bcm.edu hg19 15 74588203 74588203 + Missense_Mutation SNP A A G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . CCDC33 NM_025055 exon11 c.A1204G p.T402A AAGGACACAGTGA . 151.0 13.0 101.0 0.0 . 160 . . Atlas-SNP AGBL1 123624 hgsc.bcm.edu hg19 15 86791026 86791026 + Silent SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . AGBL1 NM_152336 exon6 c.C513T p.C171C GCTCTGCCTCAGG . 71.0 25.0 61.0 0.0 . 151 . . Atlas-SNP ACAN 176 hgsc.bcm.edu hg19 15 89402510 89402510 + Missense_Mutation SNP A A G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ACAN NM_001135 exon12 c.A6694G p.T2232A GCAGAGACGCATC . 133.0 44.0 75.0 0.0 . 220 . . Atlas-SNP THOC6 79228 hgsc.bcm.edu hg19 16 3077415 3077415 + Missense_Mutation SNP G G A rs374499488 TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . THOC6 NM_024339 exon12 c.G859A p.G287R CTGAGCGGGGAGC . 32.0 5.0 22.0 0.0 . 40 . . Atlas-SNP CDH1 999 hgsc.bcm.edu hg19 16 68849586 68849586 + Nonsense_Mutation SNP G G T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 CDH1,NS,carcinoma,0,1 CDH1 NM_004360 exon10 c.G1489T p.E497X GTGTCCGAGGACT . 104.0 57.0 136.0 0.0 . 535 . . Atlas-SNP RAP1GAP2 23108 hgsc.bcm.edu hg19 17 2868924 2868924 + Missense_Mutation SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . RAP1GAP2 NM_015085 exon8 c.C583T p.R195W TACCTCCGGGTCA . 56.0 4.0 30.0 0.0 . 90 . . Atlas-SNP AIPL1 23746 hgsc.bcm.edu hg19 17 6331740 6331740 + Silent SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . AIPL1 NM_014336 exon3 c.C363T p.C121C CAGCCCGCACGTG . 33.0 6.0 26.0 0.0 . 34 . . Atlas-SNP PFAS 5198 hgsc.bcm.edu hg19 17 8172487 8172487 + Missense_Mutation SNP G G C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . PFAS NM_012393 exon28 c.G3922C p.A1308P CAGTGGGCATGGC . 77.0 14.0 72.0 0.0 . 91 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11778277 11778277 + Silent SNP A A T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . DNAH9 NM_001372 exon53 c.A10254T p.P3418P CATTCCAGTCACC . 79.0 34.0 43.0 0.0 . 695 . . Atlas-SNP CACNA1G 8913 hgsc.bcm.edu hg19 17 48667882 48667882 + Silent SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . CACNA1G NM_001256360 exon10 c.C2352T p.S784S CACCAGCCTCTTT . 64.0 12.0 46.0 0.0 . 659 . . Atlas-SNP EPX 8288 hgsc.bcm.edu hg19 17 56281642 56281642 + Missense_Mutation SNP T T C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . EPX NM_000502 exon12 c.T2006C p.I669T GCAGAATTTCCTT . 98.0 30.0 60.0 0.0 . 95 . . Atlas-SNP MRC2 9902 hgsc.bcm.edu hg19 17 60766907 60766907 + Missense_Mutation SNP C C G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . MRC2 NM_006039 exon24 c.C3359G p.A1120G CCCCAGCAGCGCT . 111.0 8.0 70.0 0.0 . 126 . . Atlas-SNP FASN 2194 hgsc.bcm.edu hg19 17 80042151 80042151 + Silent SNP G G T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . FASN NM_004104 exon28 c.C4878A p.V1626V CAGCAGGACAGAG . 185.0 15.0 132.0 0.0 . 154 . . Atlas-SNP NEDD4L 23327 hgsc.bcm.edu hg19 18 56034978 56034978 + Silent SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . NEDD4L NM_001144967 exon22 c.G2064A p.T688T CAAAAGGGACAAC . 111.0 10.0 103.0 0.0 . 126 . . Atlas-SNP SLC25A23 79085 hgsc.bcm.edu hg19 19 6442104 6442104 + Missense_Mutation SNP C C A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . SLC25A23 NM_024103 exon10 c.G1289T p.G430V CGCATGCCCTCCT . 59.0 17.0 56.0 0.0 . 43 . . Atlas-SNP ZNF557 79230 hgsc.bcm.edu hg19 19 7075098 7075098 + Missense_Mutation SNP G G T rs377018544 alternate_allele TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ZNF557 NM_001044387 exon3 c.G13T p.V5F GCTGTCGTCCTGC . 47.0 18.0 30.0 0.0 . 40 . . Atlas-SNP RASAL3 64926 hgsc.bcm.edu hg19 19 15565556 15565556 + Missense_Mutation SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . RASAL3 NM_022904 exon12 c.G1870A p.G624S CCAAACCAAAGAG . 167.0 10.0 131.0 0.0 . 49 . . Atlas-SNP OR10H1 26539 hgsc.bcm.edu hg19 19 15918067 15918067 + Silent SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 OR10H1,NS,carcinoma,0,1 OR10H1 NM_013940 exon1 c.C781T p.L261L GCTTCAGGTAAAT . 183.0 8.0 133.0 0.0 . 59 . . Atlas-SNP MAP1S 55201 hgsc.bcm.edu hg19 19 17830385 17830385 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . MAP1S NM_018174 exon1 c.G74A p.G25E AGTTCGGGAGCCC . 167.0 58.0 117.0 0.0 . 74 . . Atlas-SNP ZNF781 163115 hgsc.bcm.edu hg19 19 38160112 38160112 + Missense_Mutation SNP A A G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ZNF781 NM_152605 exon4 c.T938C p.M313T ACATTCATAAGGT . 81.0 7.0 48.0 0.0 . 66 . . Atlas-SNP GGN 199720 hgsc.bcm.edu hg19 19 38876402 38876402 + Silent SNP T T C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . GGN NM_152657 exon3 c.A1500G p.P500P GGGAGCTGGAGCC . 42.0 7.0 33.0 0.0 . 50 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38993233 38993233 + Silent SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . RYR1 NM_001042723 exon48 c.G7701A p.P2567P TGCGCCGCTCTTT . 74.0 19.0 42.0 0.0 . 708 . . Atlas-SNP FPR2 2358 hgsc.bcm.edu hg19 19 52272249 52272249 + Missense_Mutation SNP T T C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . FPR2 NM_001005738 exon2 c.T338C p.V113A GAAGTGTCTTCTT . 95.0 18.0 63.0 0.0 . 66 . . Atlas-SNP ZNF548 147694 hgsc.bcm.edu hg19 19 57909862 57909862 + Silent SNP A A T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ZNF548 NM_001172773 exon4 c.A243T p.S81S AGTGTCAGAGGTT . 117.0 7.0 82.0 0.0 . 64 . . Atlas-SNP C20orf194 25943 hgsc.bcm.edu hg19 20 3306871 3306871 + Silent SNP A A G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . C20orf194 NM_001009984 exon13 c.T1161C p.C387C AGCATAACATGCA . 397.0 72.0 297.0 0.0 . 83 . . Atlas-SNP SEMG2 6407 hgsc.bcm.edu hg19 20 43851661 43851661 + Missense_Mutation SNP A A T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . SEMG2 NM_003008 exon2 c.A1388T p.E463V ATAAGGAAAATAA . 204.0 16.0 124.0 0.0 . 92 . . Atlas-SNP NFATC2 4773 hgsc.bcm.edu hg19 20 50158976 50158976 + Silent SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . NFATC2 NM_012340 exon1 c.G63A p.G21G GCTGCCCCCAGGC . 307.0 116.0 206.0 0.0 . 112 . . Atlas-SNP ZNF831 128611 hgsc.bcm.edu hg19 20 57769174 57769174 + Missense_Mutation SNP A A T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . ZNF831 NM_178457 exon1 c.A3100T p.R1034W ACTAGCAGGCCAG . 42.0 4.0 31.0 0.0 . 287 . . Atlas-SNP SCAF4 57466 hgsc.bcm.edu hg19 21 33065744 33065744 + Missense_Mutation SNP T T C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . SCAF4 NM_020706 exon12 c.A1376G p.H459R CGTCGATGCCGAG . 156.0 50.0 72.0 0.0 . 142 . . Atlas-SNP NEFH 4744 hgsc.bcm.edu hg19 22 29885648 29885648 + Silent SNP A A G novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . NEFH NM_021076 exon4 c.A2019G p.E673E GGCAGAAGCAAAG . 353.0 18.0 237.0 0.0 . 178 . . Atlas-SNP NEFH 4744 hgsc.bcm.edu hg19 22 29885651 29885651 + Silent SNP A A C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . NEFH NM_021076 exon4 c.A2022C p.A674A AGAAGCAAAGTCC . 355.0 19.0 241.0 0.0 . 178 . . Atlas-SNP CACNA1I 8911 hgsc.bcm.edu hg19 22 40042812 40042812 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . CACNA1I NM_001003406 exon8 c.G1388A p.R463Q AGAGCCGGCGCCA . 114.0 11.0 93.0 0.0 . 264 . . Atlas-SNP SUPT20HL1 100130302 hgsc.bcm.edu hg19 X 24382381 24382381 + Missense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . . NM_001136234 exon1 c.G1504A p.A502T GCTGCTGCTGCTG . 241.0 19.0 171.0 0.0 . . . . Atlas-SNP SUPT20HL1 100130302 hgsc.bcm.edu hg19 X 24382382 24382382 + Missense_Mutation SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . . NM_001136234 exon1 c.C1505T p.A502V CTGCTGCTGCTGC . 239.0 19.0 166.0 0.0 . . . . Atlas-SNP SUPT20HL1 100130302 hgsc.bcm.edu hg19 X 24382420 24382420 + Missense_Mutation SNP G G C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . . NM_001136234 exon1 c.G1543C p.A515P GCTGCTGCTGCTG . 167.0 10.0 130.0 0.0 . . . . Atlas-SNP PHKA1 5255 hgsc.bcm.edu hg19 X 71813017 71813017 + Silent SNP C C T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . PHKA1 NM_002637 exon29 c.G3180A p.L1060L CCCATCCAGCCTT . 180.0 75.0 170.0 0.0 . 129 . . Atlas-SNP NRK 203447 hgsc.bcm.edu hg19 X 105197132 105197132 + Silent SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . NRK NM_198465 exon28 c.G4620A p.K1540K AATTAAGAAGCTG . 309.0 51.0 254.0 0.0 . 321 . . Atlas-SNP COL4A5 1287 hgsc.bcm.edu hg19 X 107863658 107863658 + Splice_Site SNP T T C novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . COL4A5 NM_033380 exon31 c.2677+2T>C . TCCAGGTAATTTG . 175.0 21.0 121.0 0.0 . 262 . . Atlas-SNP DDX26B 203522 hgsc.bcm.edu hg19 X 134711160 134711160 + Missense_Mutation SNP C C A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . DDX26B NM_182540 exon14 c.C1816A p.Q606K GGGCCACAAAACA . 259.0 42.0 168.0 0.0 . 130 . . Atlas-SNP FATE1 89885 hgsc.bcm.edu hg19 X 150891213 150891213 + Nonsense_Mutation SNP G G A novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . FATE1 NM_033085 exon5 c.G534A p.W178X CCTGTGGCTGTGG . 274.0 104.0 160.0 0.0 . 30 . . Atlas-SNP LAMB1 3912 hgsc.bcm.edu hg19 7 107603404 107603404 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . LAMB1 NM_002291 exon15 c.1804delG p.D602fs . . 76.0 21.0 63.0 0.0 . 185 . . Atlas-INDEL CD1E 913 hgsc.bcm.edu hg19 1 158325883 158325889 + Frame_Shift_Del DEL ATCATCC ATCATCC - novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 ATCATCC ATCATCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . CD1E NM_030893 exon4 c.891_897del p.297_299del . . 108.0 14.0 54.0 0.0 . 129 . . Atlas-INDEL CD1E 913 hgsc.bcm.edu hg19 1 158325895 158325896 + Frame_Shift_Ins INS - - T novel TCGA-DD-AADI-01A-11D-A40R-10 TCGA-DD-AADI-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq dba0ae12-2411-4434-99df-3c0ffe50d5b8 0c54a21e-f61a-458f-971c-33e10b96eec4 . CD1E NM_030893 exon4 c.904_905insT p.G302fs . . 103.0 17.0 48.0 0.0 . 129 . . Atlas-INDEL