Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KIAA1751	85452	hgsc.bcm.edu	hg19	1	1905521	1905521	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	KIAA1751	NM_001080484	exon7	c.T617A	p.L206H	CTGCAGAGCTGCT	.	93.0	28.0	141.0	0.0	.	92	.	.	Atlas-SNP
ID3	3399	hgsc.bcm.edu	hg19	1	23885468	23885468	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ID3	NM_002167	exon2	c.A343C	p.R115R	AGCTCCTTTTGTC	.	71.0	40.0	90.0	0.0	.	29	.	.	Atlas-SNP
PPP1R8	5511	hgsc.bcm.edu	hg19	1	28167686	28167686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PPP1R8	NM_014110	exon4	c.G433A	p.G145R	ATGGGTGGAGAGG	.	145.0	30.0	225.0	0.0	.	17	.	.	Atlas-SNP
PTGER3	5733	hgsc.bcm.edu	hg19	1	71513044	71513044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PTGER3	NM_001126044	exon1	c.G217T	p.V73L	GCGACACGAGCAG	.	253.0	74.0	262.0	0.0	.	246	.	.	Atlas-SNP
NEGR1	257194	hgsc.bcm.edu	hg19	1	72748049	72748049	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	NEGR1	NM_173808	exon1	c.G129T	p.A43A	CACGGCCGCCCAG	.	364.0	30.0	374.0	0.0	.	60	.	.	Atlas-SNP
LPHN2	23266	hgsc.bcm.edu	hg19	1	82456669	82456669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	LPHN2	NM_012302	exon20	c.A4052G	p.Y1351C	TTTACTATAAAAG	.	110.0	22.0	100.0	0.0	.	464	.	.	Atlas-SNP
ARHGAP29	9411	hgsc.bcm.edu	hg19	1	94639693	94639693	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ARHGAP29	NM_004815	exon23	c.T3518G	p.I1173S	CTGATGATGGGAG	.	90.0	15.0	106.0	0.0	.	132	.	.	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	hg19	1	108322109	108322109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	VAV3	NM_006113	exon3	c.A327G	p.I109M	TGTTTCTATAACC	.	152.0	21.0	142.0	0.0	.	176	.	.	Atlas-SNP
MOV10	4343	hgsc.bcm.edu	hg19	1	113237434	113237434	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	MOV10	NM_020963	exon10	c.G1536A	p.T512T	TGTTACGGGCACC	.	252.0	61.0	272.0	0.0	.	74	.	.	Atlas-SNP
COPA	1314	hgsc.bcm.edu	hg19	1	160303442	160303442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	COPA	NM_001098398	exon5	c.G337T	p.D113Y	GATCATCGGAGGC	.	230.0	158.0	111.0	0.0	.	181	.	.	Atlas-SNP
C1orf112	55732	hgsc.bcm.edu	hg19	1	169773232	169773232	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	C1orf112	NM_018186	exon6	c.A329T	p.Y110F	CTGTGTATTCTGG	.	224.0	18.0	139.0	0.0	.	74	.	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	hg19	1	176913059	176913059	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	ASTN1,colon,carcinoma,0,1	ASTN1	NM_004319	exon14	c.C2345A	p.S782X	GGCTCCGAGATCT	.	176.0	11.0	87.0	0.0	.	314	.	.	Atlas-SNP
AXDND1	126859	hgsc.bcm.edu	hg19	1	179504037	179504037	+	Missense_Mutation	SNP	G	G	C	rs6425573	bycluster;by2hit2allele;byhapmap	TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	AXDND1	NM_144696	exon25	c.G2971C	p.E991Q	GAAGAAGAACAAC	.	733.0	97.0	413.0	0.0	.	142	.	G|1.000;|0.000	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186045722	186045722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	HMCN1	NM_031935	exon54	c.T8453C	p.L2818P	ACCCTCTGACCTC	.	143.0	21.0	68.0	0.0	.	797	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186135944	186135944	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	HMCN1	NM_031935	exon100	c.T15444C	p.I5148I	AGATATTGATGAG	.	184.0	13.0	106.0	0.0	.	797	.	.	Atlas-SNP
KIF14	9928	hgsc.bcm.edu	hg19	1	200558357	200558357	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	KIF14	NM_014875	exon18	c.G3102A	p.L1034L	TGTAGCCAATGTT	.	126.0	9.0	74.0	0.0	.	156	.	.	Atlas-SNP
ADIPOR1	51094	hgsc.bcm.edu	hg19	1	202920181	202920181	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ADIPOR1	NM_015999	exon2	c.A18T	p.G6G	CACAGATCCTTTG	.	159.0	11.0	92.0	0.0	.	32	.	.	Atlas-SNP
TMEM81	388730	hgsc.bcm.edu	hg19	1	205053415	205053415	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	TMEM81,right_upper_lobe,carcinoma,+2,1	TMEM81	NM_203376	exon1	c.A34T	p.S12C	CCAGGCTCCCAAG	.	336.0	21.0	190.0	0.0	.	23	.	.	Atlas-SNP
CR1L	1379	hgsc.bcm.edu	hg19	1	207870917	207870917	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CR1L	NM_175710	exon6	c.G932C	p.G311A	CACCCGGGCAGGA	.	744.0	48.0	435.0	0.0	.	97	.	.	Atlas-SNP
VASH2	79805	hgsc.bcm.edu	hg19	1	213125028	213125028	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	VASH2	NM_024749	exon2	c.G144A	p.L48L	GGTGCTGTTCCAC	.	170.0	62.0	108.0	0.0	.	55	.	.	Atlas-SNP
BPNT1	10380	hgsc.bcm.edu	hg19	1	220232311	220232311	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	BPNT1	NM_006085	exon9	c.A802C	p.N268H	GAACATTCCCATG	.	153.0	21.0	91.0	0.0	.	29	.	.	Atlas-SNP
HLX	3142	hgsc.bcm.edu	hg19	1	221057792	221057792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	HLX	NM_021958	exon4	c.A1213G	p.T405A	CAAACAACAGTTA	.	336.0	69.0	167.0	0.0	.	67	.	.	Atlas-SNP
DISC1	27185	hgsc.bcm.edu	hg19	1	231829938	231829938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	DISC1	NM_001164541	exon2	c.A434G	p.Q145R	GGCAGCAAGAGTT	.	81.0	11.0	51.0	0.0	.	207	.	.	Atlas-SNP
C1orf101	257044	hgsc.bcm.edu	hg19	1	244643048	244643048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	C1orf101	NM_173807	exon5	c.A288T	p.E96D	TGTGGAAAGTTCT	.	190.0	39.0	100.0	0.0	.	158	.	.	Atlas-SNP
OR2G6	391211	hgsc.bcm.edu	hg19	1	248685500	248685500	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	OR2G6	NM_001013355	exon1	c.A553C	p.I185L	GTGCTCATCAAAC	.	254.0	19.0	145.0	0.0	.	124	.	.	Atlas-SNP
NT5C1B	93034	hgsc.bcm.edu	hg19	2	18757614	18757614	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	NT5C1B	NM_001199087	exon9	c.T1396G	p.F466V	CATCAAACATTGT	.	368.0	66.0	358.0	0.0	.	72	.	.	Atlas-SNP
PUS10	150962	hgsc.bcm.edu	hg19	2	61236071	61236071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PUS10	NM_144709	exon3	c.A206G	p.K69R	ATTTTCTTGGGAG	.	110.0	21.0	134.0	0.0	.	49	.	.	Atlas-SNP
CCT4	10575	hgsc.bcm.edu	hg19	2	62107502	62107502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CCT4	NM_006430	exon4	c.A298G	p.I100V	CTTCTATATCTTG	.	84.0	16.0	87.0	0.0	.	38	.	.	Atlas-SNP
RIF1	55183	hgsc.bcm.edu	hg19	2	152267846	152267846	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	RIF1	NM_018151	exon3	c.T177G	p.V59V	CAAAGTTTTAAAG	.	786.0	92.0	714.0	0.0	.	244	.	.	Atlas-SNP
KLHL23	151230	hgsc.bcm.edu	hg19	2	170597991	170597991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	KLHL23	NM_144711	exon3	c.A1310G	p.Q437R	AAGTTCAGAGCTA	.	143.0	14.0	139.0	0.0	.	52	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179574355	179574355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	TTN	NM_001267550	exon99	c.A28691G	p.Y9564C	CATGTGTACAAAC	.	148.0	25.0	121.0	0.0	.	18412	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196636398	196636398	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	DNAH7	NM_018897	exon61	c.C11419T	p.Q3807X	CTTTTTGAATATT	.	107.0	45.0	112.0	0.0	.	512	.	.	Atlas-SNP
RUFY4	285180	hgsc.bcm.edu	hg19	2	218939937	218939937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	RUFY4	NM_198483	exon9	c.A722G	p.Q241R	CCCAGCAACAAAG	.	341.0	77.0	311.0	0.0	.	59	.	.	Atlas-SNP
ACSL3	2181	hgsc.bcm.edu	hg19	2	223781203	223781203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ACSL3	NM_203372	exon4	c.A545G	p.Y182C	TTATGTATAATTT	.	126.0	46.0	107.0	0.0	.	107	.	.	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	hg19	2	228883428	228883428	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	SPHKAP	NM_030623	exon7	c.A2142T	p.L714F	CACATCTAAAAGC	.	84.0	26.0	87.0	0.0	.	750	.	.	Atlas-SNP
MYEOV2	150678	hgsc.bcm.edu	hg19	2	241066176	241066176	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	MYEOV2	NM_138336	exon5	c.A563C	p.K188T	TGGTTCTTCCGTA	.	146.0	17.0	159.0	0.0	.	20	.	.	Atlas-SNP
TTC21A	199223	hgsc.bcm.edu	hg19	3	39152495	39152495	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	TTC21A	NM_001105513	exon4	c.G422C	p.R141T	TTTCTAGAGGCTT	.	86.0	11.0	70.0	0.0	.	96	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41274911	41274911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	CTNNB1,NS,carcinoma,0,5	CTNNB1	NM_001098209	exon8	c.T1161A	p.N387K	CAGGAATCTTTCA	.	153.0	19.0	141.0	1.0	.	4904	.	.	Atlas-SNP
DZIP3	9666	hgsc.bcm.edu	hg19	3	108380762	108380762	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	DZIP3	NM_014648	exon20	c.T2238A	p.T746T	AGAAACTGAAAAG	.	425.0	163.0	428.0	1.0	.	111	.	.	Atlas-SNP
LSAMP	4045	hgsc.bcm.edu	hg19	3	115529252	115529252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	LSAMP,NS,carcinoma,0,1	LSAMP	NM_002338	exon7	c.C929T	p.S310L	CTCACCGACCCAG	.	252.0	59.0	252.0	1.0	.	62	.	.	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	hg19	3	130110508	130110508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	COL6A5	NM_153264	exon7	c.A2903C	p.K968T	GGAATAAAAACAA	.	572.0	71.0	555.0	0.0	.	205	.	.	Atlas-SNP
PIK3CB	5291	hgsc.bcm.edu	hg19	3	138478168	138478168	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PIK3CB	NM_006219	exon1	c.A18C	p.I6I	AGGCATTATGAAA	.	353.0	47.0	391.0	0.0	.	103	.	.	Atlas-SNP
TRIM42	287015	hgsc.bcm.edu	hg19	3	140401718	140401718	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	TRIM42	NM_152616	exon2	c.C756A	p.I252I	CTGCATCACCTGC	.	74.0	17.0	83.0	0.0	.	143	.	.	Atlas-SNP
KPNA4	3840	hgsc.bcm.edu	hg19	3	160233335	160233335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	KPNA4	NM_002268	exon12	c.A937G	p.T313A	TTCCAGTAACAAT	.	258.0	95.0	271.0	0.0	.	50	.	.	Atlas-SNP
WFS1	7466	hgsc.bcm.edu	hg19	4	6303155	6303155	+	Missense_Mutation	SNP	G	G	A	rs201993978		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	WFS1	NM_001145853	exon8	c.G1633A	p.V545M	CTCTCCGTGGTCA	.	80.0	23.0	62.0	0.0	.	71	.	.	Atlas-SNP
CPEB2	132864	hgsc.bcm.edu	hg19	4	15010011	15010011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CPEB2	NM_001177382	exon3	c.A1994G	p.D665G	TCCAAGATAGTTG	.	92.0	10.0	128.0	0.0	.	77	.	.	Atlas-SNP
SPATA18	132671	hgsc.bcm.edu	hg19	4	52928483	52928483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	SPATA18	NM_145263	exon4	c.A407G	p.N136S	AATGCAACCAGGT	.	136.0	13.0	132.0	0.0	.	222	.	.	Atlas-SNP
AASDH	132949	hgsc.bcm.edu	hg19	4	57250358	57250358	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	AASDH	NM_181806	exon2	c.G108C	p.K36N	CACAGTCTTGTAG	.	298.0	42.0	319.0	0.0	.	101	.	.	Atlas-SNP
TNIP3	79931	hgsc.bcm.edu	hg19	4	122078298	122078298	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	TNIP3	NM_001244764	exon7	c.A545T	p.E182V	TCGTCCTCTCTCT	.	85.0	18.0	75.0	0.0	.	58	.	.	Atlas-SNP
FGA	2243	hgsc.bcm.edu	hg19	4	155510651	155510651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	FGA	NM_000508	exon2	c.G118A	p.V40M	TTTCCACAACCCT	.	70.0	26.0	71.0	0.0	.	179	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89947508	89947508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	GPR98	NM_032119	exon18	c.T3377C	p.I1126T	AGCCCATAGACAA	.	239.0	18.0	166.0	0.0	.	605	.	.	Atlas-SNP
APC	324	hgsc.bcm.edu	hg19	5	112175181	112175181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	APC,NS,carcinoma,0,1	APC	NM_001127510	exon17	c.A3890G	p.D1297G	AAGCAGATTCTGC	.	469.0	42.0	217.0	0.0	.	4158	.	.	Atlas-SNP
CXCL14	9547	hgsc.bcm.edu	hg19	5	134914200	134914200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CXCL14	NM_004887	exon2	c.C130T	p.P44S	TCTTGGGTCCCTT	.	141.0	14.0	98.0	0.0	.	13	.	.	Atlas-SNP
PCDHGB1	56104	hgsc.bcm.edu	hg19	5	140730572	140730572	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PCDHGB1	NM_018922	exon1	c.C745G	p.Q249E	AGCCTCCAAGAAA	.	251.0	51.0	179.0	0.0	.	198	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169502981	169502981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	DOCK2	NM_004946	exon47	c.C4759T	p.H1587Y	AAGATCCATGAGA	.	223.0	35.0	131.0	0.0	.	389	.	.	Atlas-SNP
PPP1R10	5514	hgsc.bcm.edu	hg19	6	30569817	30569817	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PPP1R10	NM_002714	exon19	c.A2609T	p.H870L	TGGTCATGGCCTC	.	137.0	20.0	102.0	0.0	.	60	.	.	Atlas-SNP
TFEB	7942	hgsc.bcm.edu	hg19	6	41653841	41653841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	TFEB	NM_001167827	exon8	c.G980T	p.W327L	CGGAGCCAGAGCT	.	110.0	31.0	110.0	0.0	.	37	.	.	Atlas-SNP
PRPH2	5961	hgsc.bcm.edu	hg19	6	42689615	42689615	+	Missense_Mutation	SNP	T	T	C	rs61755785		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PRPH2	NM_000322	exon1	c.A458G	p.K153R	GTCTTCTTCATGA	.	132.0	16.0	105.0	0.0	.	47	.	.	Atlas-SNP
CRIP3	401262	hgsc.bcm.edu	hg19	6	43276057	43276057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CRIP3	NM_206922	exon2	c.C134A	p.A45E	ACCTCTGCATGCC	.	85.0	7.0	76.0	0.0	.	30	.	.	Atlas-SNP
CD2AP	23607	hgsc.bcm.edu	hg19	6	47548615	47548615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CD2AP	NM_012120	exon10	c.C1024A	p.P342T	AAACCACCACCTC	.	442.0	47.0	436.0	0.0	.	43	.	.	Atlas-SNP
RAB23	51715	hgsc.bcm.edu	hg19	6	57059644	57059644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	RAB23	NM_016277	exon5	c.A405T	p.E135D	CTCAGCTTCCTCA	.	220.0	68.0	203.0	0.0	.	22	.	.	Atlas-SNP
USP45	85015	hgsc.bcm.edu	hg19	6	99885203	99885203	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	USP45	NM_001080481	exon17	c.G2233C	p.G745R	AGTGGCCTTCTCT	.	157.0	64.0	113.0	0.0	.	56	.	.	Atlas-SNP
NMBR	4829	hgsc.bcm.edu	hg19	6	142396877	142396877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	NMBR	NM_002511	exon3	c.C1081T	p.R361C	TCATACGCACCGC	.	150.0	22.0	136.0	0.0	.	62	.	.	Atlas-SNP
ADAP1	11033	hgsc.bcm.edu	hg19	7	959636	959636	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ADAP1	NM_006869	exon4	c.C357T	p.I119I	CGGGTAGATGAAC	.	37.0	13.0	24.0	0.0	.	23	.	.	Atlas-SNP
ZNF680	340252	hgsc.bcm.edu	hg19	7	63982713	63982713	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ZNF680	NM_178558	exon4	c.A419C	p.N140T	AGTTCATTATAAC	.	213.0	47.0	190.0	0.0	.	58	.	.	Atlas-SNP
RHBDD2	57414	hgsc.bcm.edu	hg19	7	75511209	75511209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	RHBDD2	NM_001040456	exon2	c.A241G	p.I81V	GGCGCTATCATCA	.	135.0	27.0	123.0	0.0	.	49	.	.	Atlas-SNP
PHTF2	57157	hgsc.bcm.edu	hg19	7	77549626	77549626	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PHTF2	NM_001127359	exon8	c.A705G	p.K235K	TGATAAATCAACT	.	118.0	25.0	101.0	0.0	.	104	.	.	Atlas-SNP
CD36	948	hgsc.bcm.edu	hg19	7	80276132	80276132	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	CD36_ENST00000447544,colon,carcinoma,0,4	CD36	NM_001127444	exon1	c.C76G	p.L26V	GGTATTCTAATGC	.	164.0	27.0	174.0	0.0	.	185	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82584346	82584346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PCLO	NM_014510	exon5	c.A5923G	p.T1975A	GCCTTGTTAGCAG	.	155.0	31.0	136.0	0.0	.	1506	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82584348	82584348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PCLO	NM_014510	exon5	c.T5921C	p.L1974P	CTTGTTAGCAGAC	.	153.0	30.0	138.0	0.0	.	1506	.	.	Atlas-SNP
ADAM22	53616	hgsc.bcm.edu	hg19	7	87780310	87780310	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ADAM22	NM_021722	exon19	c.T1581A	p.I527I	TAATATTCATAAA	.	210.0	21.0	155.0	0.0	.	280	.	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103155875	103155875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	RELN	NM_173054	exon50	c.C7876G	p.L2626V	GGAGAAGGATATT	.	95.0	46.0	61.0	0.0	.	593	.	.	Atlas-SNP
ATXN7L1	222255	hgsc.bcm.edu	hg19	7	105260694	105260694	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	ATXN7L1_ENST00000419735,NS,carcinoma,0,1	ATXN7L1	NM_020725	exon9	c.C1470T	p.F490F	TAGTGCGAATCGA	.	228.0	38.0	170.0	1.0	.	56	.	.	Atlas-SNP
GPR22	2845	hgsc.bcm.edu	hg19	7	107115516	107115516	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	GPR22	NM_005295	exon3	c.A1011G	p.L337L	CATTTTATGTTTA	.	392.0	33.0	297.0	0.0	.	43	.	.	Atlas-SNP
ZNF800	168850	hgsc.bcm.edu	hg19	7	127014269	127014269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ZNF800	NM_176814	exon5	c.T1121C	p.L374P	CTTTTAAGCATTA	.	140.0	32.0	119.0	0.0	.	78	.	.	Atlas-SNP
TRPV5	56302	hgsc.bcm.edu	hg19	7	142605697	142605697	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	TRPV5	NM_019841	exon15	c.G2173T	p.E725X	AGACCTCCTCTCC	.	254.0	35.0	187.0	0.0	.	164	.	.	Atlas-SNP
TRPV5	56302	hgsc.bcm.edu	hg19	7	142627485	142627485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	TRPV5	NM_019841	exon2	c.G185T	p.R62M	AGTTGCCTAAGAA	.	176.0	27.0	115.0	0.0	.	164	.	.	Atlas-SNP
MTUS1	57509	hgsc.bcm.edu	hg19	8	17612099	17612099	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	MTUS1	NM_001001924	exon2	c.C1218T	p.G406G	TGACGAGCCCACC	.	85.0	51.0	104.0	0.0	.	144	.	.	Atlas-SNP
WRN	7486	hgsc.bcm.edu	hg19	8	30958398	30958398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	WRN	NM_000553	exon18	c.G2015A	p.C672Y	CTCACTGTATTTC	.	61.0	16.0	110.0	0.0	.	116	.	.	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	hg19	8	41905925	41905925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	.	NM_001099412	exon3	c.G571T	p.V191L	GGGACACTGGAGG	.	262.0	23.0	207.0	0.0	.	.	.	.	Atlas-SNP
PRKDC	5591	hgsc.bcm.edu	hg19	8	48774689	48774689	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PRKDC	NM_001081640	exon45	c.5919-1G>T	.	CAAGTTCTGTGAA	.	114.0	12.0	99.0	0.0	.	394	.	.	Atlas-SNP
CPQ	10404	hgsc.bcm.edu	hg19	8	97797311	97797311	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	.	NM_016134	exon2	c.A186C	p.R62S	GAACAGATCCTAT	.	377.0	140.0	210.0	0.0	.	.	.	.	Atlas-SNP
CPQ	10404	hgsc.bcm.edu	hg19	8	97797316	97797316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	.	NM_016134	exon2	c.A191G	p.Y64C	GATCCTATGAGCG	.	386.0	146.0	215.0	0.0	.	.	.	.	Atlas-SNP
AK3	50808	hgsc.bcm.edu	hg19	9	4713077	4713077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	AK3	NM_016282	exon5	c.A583G	p.T195A	AGAATGTTTCCAG	.	66.0	25.0	67.0	0.0	.	16	.	.	Atlas-SNP
CNTLN	54875	hgsc.bcm.edu	hg19	9	17330664	17330664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CNTLN	NM_017738	exon9	c.C1376T	p.T459M	TAGAAACGTTAAT	.	421.0	83.0	452.0	0.0	.	128	.	.	Atlas-SNP
FAM154A	158297	hgsc.bcm.edu	hg19	9	18928249	18928249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	FAM154A	NM_153707	exon4	c.C1226A	p.T409N	CTGATGGTGTAGG	.	121.0	48.0	107.0	0.0	.	61	.	.	Atlas-SNP
PKN3	29941	hgsc.bcm.edu	hg19	9	131468992	131468992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PKN3	NM_013355	exon4	c.G412A	p.E138K	CCATAGGAGAGGA	.	61.0	11.0	57.0	0.0	.	62	.	.	Atlas-SNP
NUP214	8021	hgsc.bcm.edu	hg19	9	134004694	134004694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	NUP214	NM_005085	exon4	c.A422G	p.Y141C	TTGCCTATCATAA	.	141.0	42.0	130.0	0.0	.	166	.	.	Atlas-SNP
QSOX2	169714	hgsc.bcm.edu	hg19	9	139100947	139100947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	QSOX2	NM_181701	exon12	c.A1724G	p.Q575R	TCCCCCTGGTCTG	.	85.0	19.0	97.0	0.0	.	63	.	.	Atlas-SNP
GRIN1	2902	hgsc.bcm.edu	hg19	9	140051158	140051158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	GRIN1	NM_001185091	exon6	c.A772G	p.M258V	GCCGCGATGCTGA	.	125.0	55.0	104.0	0.0	.	51	.	.	Atlas-SNP
KIN	22944	hgsc.bcm.edu	hg19	10	7822135	7822135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	KIN	NM_012311	exon4	c.A260G	p.K87R	ACCCTTTTAGTGC	.	174.0	53.0	176.0	0.0	.	39	.	.	Atlas-SNP
LDB1	8861	hgsc.bcm.edu	hg19	10	103870846	103870846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	LDB1	NM_001113407	exon4	c.C229T	p.R77W	GAAGCCGTTTGTT	.	55.0	14.0	85.0	0.0	.	61	.	.	Atlas-SNP
CCDC172	374355	hgsc.bcm.edu	hg19	10	118084530	118084530	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	C10orf96,NS,carcinoma,0,1	.	NM_198515	exon2	c.T7C	p.L3L	ATGAGCTTGGAGT	.	45.0	11.0	75.0	0.0	.	.	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1081111	1081111	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	MUC2	NM_002457	exon11	c.C1407T	p.N469N	GCTCAACGAGCTG	.	184.0	62.0	173.0	0.0	.	614	.	.	Atlas-SNP
ZNF215	7762	hgsc.bcm.edu	hg19	11	6953723	6953723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ZNF215	NM_013250	exon3	c.C220A	p.L74I	CTCTGTCTTCAAT	.	171.0	43.0	167.0	0.0	.	72	.	.	Atlas-SNP
SOX6	55553	hgsc.bcm.edu	hg19	11	16205478	16205478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	SOX6_ENST00000527619,NS,carcinoma,0,2	SOX6	NM_001145819	exon6	c.T770C	p.L257P	TGCAGAAGTTGCT	.	74.0	10.0	103.0	0.0	.	149	.	.	Atlas-SNP
MRGPRX2	117194	hgsc.bcm.edu	hg19	11	19077740	19077740	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	MRGPRX2	NM_054030	exon2	c.C210G	p.S70R	GGCCAGGCTGAGG	.	161.0	18.0	172.0	0.0	.	42	.	.	Atlas-SNP
OR5AR1	219493	hgsc.bcm.edu	hg19	11	56431491	56431491	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	OR5AR1	NM_001004730	exon1	c.T330A	p.A110A	GGATGCTGAGTGC	.	89.0	16.0	101.0	0.0	.	68	.	.	Atlas-SNP
TMEM132A	54972	hgsc.bcm.edu	hg19	11	60703453	60703453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	TMEM132A	NM_017870	exon11	c.C2149A	p.P717T	ATCCTGCCAGCTG	.	49.0	15.0	45.0	0.0	.	135	.	.	Atlas-SNP
TRIM49C	642612	hgsc.bcm.edu	hg19	11	89774410	89774410	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	TRIM49C	NM_001195234	exon8	c.T1051A	p.W351R	GACTCCTGGAATT	.	134.0	36.0	137.0	0.0	.	48	.	.	Atlas-SNP
DDI1	414301	hgsc.bcm.edu	hg19	11	103908514	103908514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	DDI1	NM_001001711	exon1	c.G964A	p.E322K	ATACTTGAGGATC	.	120.0	37.0	117.0	0.0	.	222	.	.	Atlas-SNP
C11orf63	79864	hgsc.bcm.edu	hg19	11	122774672	122774672	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	C11orf63	NM_024806	exon3	c.T384C	p.Y128Y	CCGCTATGACCCG	.	168.0	20.0	156.0	0.0	.	116	.	.	Atlas-SNP
C11orf63	79864	hgsc.bcm.edu	hg19	11	122805414	122805414	+	Missense_Mutation	SNP	A	A	G	rs201888967		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	C11orf63	NM_024806	exon5	c.A1265G	p.N422S	CTAACAATGATGT	.	200.0	73.0	174.0	0.0	.	116	.	.	Atlas-SNP
WNK1	65125	hgsc.bcm.edu	hg19	12	992147	992147	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	WNK1	NM_001184985	exon15	c.A4191T	p.L1397F	TCAATTAGAGACT	.	155.0	27.0	189.0	0.0	.	403	.	.	Atlas-SNP
RND1	27289	hgsc.bcm.edu	hg19	12	49258640	49258640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	RND1	NM_014470	exon2	c.C134T	p.T45I	AACACGGTGGGCA	.	196.0	40.0	167.0	0.0	.	26	.	.	Atlas-SNP
GRIP1	23426	hgsc.bcm.edu	hg19	12	66786128	66786128	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	GRIP1	NM_001178074	exon18	c.A2268C	p.S756S	ATCCCATGAATCC	.	69.0	9.0	78.0	0.0	.	106	.	.	Atlas-SNP
GRIP1	23426	hgsc.bcm.edu	hg19	12	66786129	66786129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	GRIP1	NM_001178074	exon18	c.C2267T	p.S756L	TCCCATGAATCCA	.	72.0	10.0	77.0	0.0	.	106	.	.	Atlas-SNP
CNOT2	4848	hgsc.bcm.edu	hg19	12	70729244	70729244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CNOT2	NM_001199302	exon9	c.G676T	p.D226Y	GGATTGGACCTTT	.	143.0	52.0	129.0	0.0	.	53	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	81026036	81026036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PTPRQ	NM_001145026	exon31	c.A5236G	p.I1746V	TCAATAATTCTCC	.	122.0	26.0	117.0	0.0	.	119	.	.	Atlas-SNP
TRPC4	7223	hgsc.bcm.edu	hg19	13	38237691	38237691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	TRPC4	NM_003306	exon6	c.T1550C	p.L517S	AACTTCAAAATGT	.	147.0	38.0	174.0	0.0	.	389	.	.	Atlas-SNP
IRS2	8660	hgsc.bcm.edu	hg19	13	110436754	110436754	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	IRS2	NM_003749	exon1	c.G1647T	p.L549L	GTGGCTCAGGGGC	.	101.0	40.0	125.0	0.0	.	44	.	.	Atlas-SNP
ARHGEF40	55701	hgsc.bcm.edu	hg19	14	21544595	21544595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ARHGEF40	NM_018071	exon6	c.C1816T	p.P606S	CTCATTCCTGCCT	.	48.0	16.0	54.0	0.0	.	84	.	.	Atlas-SNP
G2E3	55632	hgsc.bcm.edu	hg19	14	31058658	31058658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	G2E3	NM_017769	exon4	c.A205G	p.I69V	GAAGATATCAGGA	.	157.0	27.0	157.0	0.0	.	82	.	.	Atlas-SNP
KIAA0391	9692	hgsc.bcm.edu	hg19	14	35649939	35649939	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	KIAA0391	NM_014672	exon5	c.C1231G	p.L411V	GATGGTCTCAATG	.	88.0	15.0	91.0	0.0	.	35	.	.	Atlas-SNP
NEMF	9147	hgsc.bcm.edu	hg19	14	50266232	50266232	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	NEMF	NM_004713	exon25	c.A2426C	p.K809T	TGTGATTTACTGT	.	297.0	46.0	312.0	0.0	.	79	.	.	Atlas-SNP
SLC10A1	6554	hgsc.bcm.edu	hg19	14	70246027	70246027	+	Silent	SNP	A	A	T	rs375859965	alternate_allele	TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	SLC10A1	NM_003049	exon3	c.T618A	p.S206S	GATGGCAGAGAGA	.	101.0	28.0	118.0	0.0	.	32	.	.	Atlas-SNP
RIN3	79890	hgsc.bcm.edu	hg19	14	93118677	93118677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	RIN3,NS,carcinoma,0,1	RIN3	NM_024832	exon6	c.A1283G	p.E428G	CCCGGGAGAGCAC	.	151.0	20.0	218.0	1.0	.	81	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	42054035	42054035	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	MGA	NM_001164273	exon21	c.A7497G	p.V2499V	GAAAGTATCGTCT	.	235.0	63.0	225.0	0.0	.	264	.	.	Atlas-SNP
LEO1	123169	hgsc.bcm.edu	hg19	15	52258161	52258161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	LEO1	NM_138792	exon2	c.A599T	p.E200V	TGTCTCTCATCAT	.	84.0	13.0	86.0	0.0	.	46	.	.	Atlas-SNP
LMAN1L	79748	hgsc.bcm.edu	hg19	15	75111586	75111586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	LMAN1L	NM_021819	exon6	c.G691T	p.V231F	TTTGGGGTCTCAG	.	78.0	25.0	66.0	0.0	.	43	.	.	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	hg19	16	3843532	3843532	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CREBBP	NM_001079846	exon4	c.G1071A	p.Q357Q	AACCAGCTGCTGC	.	136.0	60.0	141.0	0.0	.	546	.	.	Atlas-SNP
GSG1L	146395	hgsc.bcm.edu	hg19	16	27840137	27840137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	GSG1L_ENST00000447459,right_upper_lobe,carcinoma,0,2	GSG1L	NM_001109763	exon5	c.C803A	p.P268H	GCCTCAGGGTCTA	.	96.0	33.0	111.0	1.0	.	82	.	.	Atlas-SNP
IRX5	10265	hgsc.bcm.edu	hg19	16	54966798	54966798	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	IRX5	NM_001252197	exon2	c.C638G	p.P213R	GCGACCCCGAGGG	.	351.0	100.0	416.0	0.0	.	41	.	.	Atlas-SNP
KIFC3	3801	hgsc.bcm.edu	hg19	16	57805281	57805281	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	KIFC3	NM_001130100	exon6	c.G594A	p.L198L	CTCTGACAGCATG	.	110.0	28.0	114.0	0.0	.	55	.	.	Atlas-SNP
RABEP1	9135	hgsc.bcm.edu	hg19	17	5286425	5286425	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	RABEP1	NM_004703	exon18	c.A2496T	p.L832F	GCAGTTAGAGCGG	.	113.0	30.0	95.0	0.0	.	59	.	.	Atlas-SNP
TNFRSF13B	23495	hgsc.bcm.edu	hg19	17	16842939	16842939	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	TNFRSF13B	NM_012452	exon5	c.G804T	p.L268L	AGGCTGCAGGACT	.	112.0	22.0	125.0	0.0	.	34	.	.	Atlas-SNP
DHRS13	147015	hgsc.bcm.edu	hg19	17	27228310	27228310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	DHRS13	NM_144683	exon4	c.C380T	p.S127F	CCACAGGAACTGA	.	204.0	89.0	212.0	0.0	.	22	.	.	Atlas-SNP
CACNB1	782	hgsc.bcm.edu	hg19	17	37331579	37331579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CACNB1	NM_000723	exon14	c.A1664G	p.Y555C	TCCTCATAGTCTT	.	85.0	12.0	62.0	0.0	.	89	.	.	Atlas-SNP
ERBB2	2064	hgsc.bcm.edu	hg19	17	37872630	37872630	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ERBB2	NM_004448	exon13	c.C1590T	p.N530N	TGTCAACTGCAGC	.	91.0	20.0	81.0	0.0	.	429	.	.	Atlas-SNP
KRT37	8688	hgsc.bcm.edu	hg19	17	39577655	39577655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	KRT37	NM_003770	exon6	c.C1205A	p.A402D	TATGTGGCAATCT	.	125.0	40.0	142.0	0.0	.	61	.	.	Atlas-SNP
PSMD12	5718	hgsc.bcm.edu	hg19	17	65343347	65343347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PSMD12	NM_002816	exon7	c.A680G	p.Y227C	AAATTATAGTACT	.	131.0	18.0	107.0	0.0	.	32	.	.	Atlas-SNP
ESCO1	114799	hgsc.bcm.edu	hg19	18	19154672	19154672	+	Missense_Mutation	SNP	T	T	C	rs141644808		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ESCO1	NM_052911	exon4	c.A133G	p.I45V	ATTTTATAGTCTC	.	76.0	9.0	82.0	0.0	.	89	.	T|1.000;C|0.000	Atlas-SNP
ZNF396	252884	hgsc.bcm.edu	hg19	18	32953439	32953439	+	Silent	SNP	A	A	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ZNF396	NM_145756	exon3	c.T543G	p.L181L	GGACTGAAGCTCC	.	92.0	52.0	96.0	0.0	.	28	.	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	hg19	18	51057014	51057014	+	Silent	SNP	A	A	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	DCC	NM_005215	exon29	c.A4335C	p.S1445S	AGGCTCAGCCTTT	.	102.0	39.0	115.0	0.0	.	360	.	.	Atlas-SNP
SERPINB10	5273	hgsc.bcm.edu	hg19	18	61597343	61597343	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	SERPINB10	NM_005024	exon5	c.C555T	p.N185N	GGTGAACGCCCTA	.	122.0	32.0	130.0	0.0	.	53	.	.	Atlas-SNP
CBLN2	147381	hgsc.bcm.edu	hg19	18	70205499	70205499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CBLN2	NM_182511	exon5	c.A587G	p.D196G	ACTTTGTCTTCCC	.	136.0	19.0	141.0	0.0	.	41	.	.	Atlas-SNP
CLEC4G	339390	hgsc.bcm.edu	hg19	19	7795687	7795687	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CLEC4G	NM_198492	exon5	c.G342C	p.A114A	CAGCTTCGCCTGC	.	40.0	14.0	26.0	0.0	.	18	.	.	Atlas-SNP
ZNF561	93134	hgsc.bcm.edu	hg19	19	9721732	9721732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ZNF561	NM_152289	exon6	c.G605A	p.C202Y	TTTCCACATTCCT	.	105.0	31.0	92.0	0.0	.	64	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10602646	10602646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	KEAP1	NM_012289	exon3	c.A932T	p.H311L	GGCTTGTGCAGGG	.	102.0	54.0	106.0	0.0	.	182	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10610207	10610207	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	KEAP1	NM_012289	exon2	c.T503G	p.V168G	GCACGGACAACGC	.	115.0	39.0	113.0	0.0	.	182	.	.	Atlas-SNP
ZNF625	90589	hgsc.bcm.edu	hg19	19	12256356	12256356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ZNF625	NM_145233	exon4	c.A875G	p.Y292C	TCATGATATCGAA	.	169.0	50.0	132.0	0.0	.	37	.	.	Atlas-SNP
PTGER1	5731	hgsc.bcm.edu	hg19	19	14583393	14583393	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PTGER1	NM_000955	exon3	c.C1188G	p.H396Q	GCCGCTGTGCCGG	.	65.0	13.0	59.0	0.0	.	5	.	.	Atlas-SNP
ZNF98	148198	hgsc.bcm.edu	hg19	19	22575383	22575383	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ZNF98	NM_001098626	exon4	c.C654T	p.A218A	ATTATAGGCTTTC	.	535.0	171.0	456.0	0.0	.	230	.	.	Atlas-SNP
ZNF98	148198	hgsc.bcm.edu	hg19	19	22575384	22575384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ZNF98	NM_001098626	exon4	c.C653A	p.A218D	TTATAGGCTTTCC	.	531.0	170.0	449.0	0.0	.	230	.	.	Atlas-SNP
ZNF573	126231	hgsc.bcm.edu	hg19	19	38230022	38230022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ZNF573	NM_001172690	exon5	c.C1369A	p.L457I	GAGTAAGATTTCT	.	224.0	40.0	155.0	0.0	.	63	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38379360	38379360	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	WDR87	NM_031951	exon6	c.G4834C	p.E1612Q	TCTCTTCCTGGGC	.	296.0	22.0	182.0	0.0	.	191	.	.	Atlas-SNP
GYS1	2997	hgsc.bcm.edu	hg19	19	49473108	49473108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	GYS1	NM_002103	exon15	c.A1814G	p.Y605C	GACATATAGTACT	.	38.0	4.0	26.0	0.0	.	59	.	.	Atlas-SNP
ZNF577	84765	hgsc.bcm.edu	hg19	19	52375982	52375982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ZNF577	NM_032679	exon7	c.G1261A	p.G421R	GGGTTCCTGAGGA	.	152.0	12.0	122.0	0.0	.	63	.	.	Atlas-SNP
TTYH1	57348	hgsc.bcm.edu	hg19	19	54947007	54947007	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	TTYH1	NM_020659	exon12	c.1269-1G>A	.	ACCCCAGTGACGA	.	91.0	35.0	97.0	0.0	.	78	.	.	Atlas-SNP
RALGAPA2	57186	hgsc.bcm.edu	hg19	20	20505080	20505080	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	RALGAPA2	NM_020343	exon30	c.C3870T	p.A1290A	GGCTCTGGCCGAA	.	28.0	10.0	59.0	0.0	.	274	.	.	Atlas-SNP
DEFB116	245930	hgsc.bcm.edu	hg19	20	29891100	29891100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	DEFB116	NM_001037731	exon2	c.T224C	p.I75T	CTGGTTATTTTCA	.	123.0	10.0	114.0	0.0	.	18	.	.	Atlas-SNP
SUN5	140732	hgsc.bcm.edu	hg19	20	31573549	31573549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	SUN5	NM_080675	exon11	c.T890C	p.V297A	TAGATGACGAAGT	.	155.0	28.0	110.0	0.0	.	63	.	.	Atlas-SNP
BPIFA3	128861	hgsc.bcm.edu	hg19	20	31812207	31812207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	.	NM_178466	exon3	c.T325C	p.S109P	CAGATATCATTCC	.	109.0	19.0	97.0	0.0	.	.	.	.	Atlas-SNP
JAM2	58494	hgsc.bcm.edu	hg19	21	27086971	27086971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	JAM2	NM_021219	exon10	c.C884G	p.S295C	CAAAATCCTTTAT	.	636.0	96.0	641.0	0.0	.	33	.	.	Atlas-SNP
NCF4	4689	hgsc.bcm.edu	hg19	22	37272032	37272032	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	NCF4	NM_013416	exon8	c.A965T	p.Q322L	ACTTCCAGCCTGA	.	171.0	21.0	159.0	0.0	.	66	.	.	Atlas-SNP
CYP2D6	1565	hgsc.bcm.edu	hg19	22	42525795	42525795	+	Silent	SNP	G	G	C	rs200269944	alternate_allele	TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CYP2D6	NM_000106	exon2	c.C297G	p.A99A	GCGGTCGGCGGTG	.	292.0	18.0	225.0	0.0	.	104	.	G|0.998;A|0.002	Atlas-SNP
ASMT	438	hgsc.bcm.edu	hg19	X	1761898	1761898	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ASMT	NM_001171038	exon9	c.C1113G	p.A371A	TTTAGCCAGGAAA	.	285.0	37.0	253.0	0.0	.	31	.	.	Atlas-SNP
MED14	9282	hgsc.bcm.edu	hg19	X	40526045	40526045	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	MED14	NM_004229	exon24	c.A3192G	p.S1064S	AACAAATGACGCT	.	176.0	49.0	217.0	0.0	.	108	.	.	Atlas-SNP
HDAC6	10013	hgsc.bcm.edu	hg19	X	48673109	48673109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	HDAC6	NM_006044	exon12	c.G961T	p.A321S	TACATTGCTGCTT	.	34.0	25.0	42.0	0.0	.	111	.	.	Atlas-SNP
PHKA1	5255	hgsc.bcm.edu	hg19	X	71838613	71838613	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PHKA1	NM_002637	exon21	c.G2316C	p.E772D	TGAGGTCTCCTTC	.	125.0	44.0	142.0	0.0	.	129	.	.	Atlas-SNP
PHKA1	5255	hgsc.bcm.edu	hg19	X	71838663	71838663	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PHKA1	NM_002637	exon21	c.G2266C	p.D756H	ACTGGTCTCTAGG	.	106.0	37.0	121.0	0.0	.	129	.	.	Atlas-SNP
ARMCX2	9823	hgsc.bcm.edu	hg19	X	100911407	100911407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ARMCX2	NM_014782	exon5	c.A1168G	p.K390E	GGACCTTCCTGAG	.	60.0	10.0	61.0	0.0	.	75	.	.	Atlas-SNP
LHFPL1	340596	hgsc.bcm.edu	hg19	X	111914512	111914512	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	LHFPL1	NM_178175	exon2	c.C107G	p.S36C	ATCTGGGATCCAA	.	130.0	32.0	104.0	0.0	.	28	.	.	Atlas-SNP
SPRY3	10251	hgsc.bcm.edu	hg19	X	155004067	155004067	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	SPRY3	NM_005840	exon2	c.T534C	p.A178A	CTCTGCTGAGAGC	.	119.0	47.0	128.0	0.0	.	52	.	.	Atlas-SNP
XPO6	23214	hgsc.bcm.edu	hg19	16	28187343	28187359	+	Frame_Shift_Del	DEL	AGTTTGGGCAGACAGCT	AGTTTGGGCAGACAGCT	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	AGTTTGGGCAGACAGCT	AGTTTGGGCAGACAGCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	XPO6	NM_015171	exon4	c.266_282del	p.89_94del	.	.	143.0	12.0	158.0	0.0	.	177	.	.	Atlas-Indel,Pindel
RBM10	8241	hgsc.bcm.edu	hg19	X	47039334	47039345	+	In_Frame_Del	DEL	CCTGGCACCCTA	CCTGGCACCCTA	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	CCTGGCACCCTA	CCTGGCACCCTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	RBM10	NM_001204468	exon10	c.1151_1162del	p.384_388del	.	.	107.0	18.0	102.0	0.0	.	117	.	.	Atlas-Indel,Pindel
CNOT6L	246175	hgsc.bcm.edu	hg19	4	78697452	78697453	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CNOT6L	NM_144571	exon2	c.100_101insA	p.S34fs	.	.	100.0	28.0	102.0	0.0	.	57	.	.	Atlas-Indel,Pindel
NGEF	25791	hgsc.bcm.edu	hg19	2	233757625	233757626	+	Frame_Shift_Ins	INS	-	-	CG	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	NGEF	NM_019850	exon7	c.1125_1126insCG	p.R375fs	.	.	114.0	17.0	101.0	0.0	.	198	.	.	Atlas-Indel,Pindel
CYC1	1537	hgsc.bcm.edu	hg19	8	145150875	145150876	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.,1	CYC1	NM_001916	exon2	c.269_270insC	p.H90fs	.	.	57.0	20.0	45.0	0.0	.	34	.	.	Atlas-Indel,Pindel
C6orf47	57827	hgsc.bcm.edu	hg19	6	31627289	31627336	+	In_Frame_Del	DEL	CCAATGGGGCTCCTGGCCCAGGGACGCTCAGTCCCCCTTCAGGGGACA	CCAATGGGGCTCCTGGCCCAGGGACGCTCAGTCCCCCTTCAGGGGACA	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	CCAATGGGGCTCCTGGCCCAGGGACGCTCAGTCCCCCTTCAGGGGACA	CCAATGGGGCTCCTGGCCCAGGGACGCTCAGTCCCCCTTCAGGGGACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	C6orf47	NM_021184	exon1	c.390_437del	p.130_146del	.	.	92.0	19.0	74.0	0.0	.	15	.	.	Atlas-Indel,Pindel
CDKAL1	54901	hgsc.bcm.edu	hg19	6	20846331	20846331	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CDKAL1	NM_017774	exon9	c.663delC	p.C221X	.	.	223.0	62.0	155.0	0.0	.	55	.	.	Atlas-Indel,Pindel
PKD2L2	27039	hgsc.bcm.edu	hg19	5	137230131	137230133	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	CTA	CTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PKD2L2	NM_001258448	exon4	c.356_358del	p.119_120del	.	.	127.0	75.0	71.0	0.0	.	68	.	.	Atlas-Indel,Pindel
RBL2	5934	hgsc.bcm.edu	hg19	16	53514601	53514602	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	RBL2	NM_005611	exon20	c.3004_3005insG	p.R1002fs	.	.	199.0	29.0	169.0	0.0	.	115	.	.	Atlas-Indel,Pindel
TRIT1	54802	hgsc.bcm.edu	hg19	1	40310251	40310251	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	TRIT1	NM_017646	exon9	c.1069delG	p.E357fs	.	.	447.0	151.0	429.0	0.0	.	40	.	.	Atlas-Indel,Pindel
CCDC50	152137	hgsc.bcm.edu	hg19	3	191093078	191093078	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CCDC50	NM_178335	exon6	c.675delG	p.R225fs	.	.	182.0	22.0	193.0	0.0	.	39	.	.	Atlas-INDEL
CDKN2A	1029	hgsc.bcm.edu	hg19	9	21974713	21974713	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CDKN2A	NM_058197	exon1	c.115delA	p.N39fs	.	.	82.0	11.0	90.0	0.0	.	4810	.	.	Atlas-INDEL
ADCY2	108	hgsc.bcm.edu	hg19	5	7396475	7396476	+	In_Frame_Ins	INS	-	-	GGG	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ADCY2	NM_020546	exon1	c.66_67insGGG	p.G22delinsGG	.	.	106.0	19.0	80.0	0.0	.	337	.	.	Atlas-Indel,Pindel
PPP1CA	5499	hgsc.bcm.edu	hg19	11	67166088	67166097	+	Frame_Shift_Del	DEL	CCCTTGTTCT	CCCTTGTTCT	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	CCCTTGTTCT	CCCTTGTTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	PPP1CA	NM_001008709	exon7	c.936_945del	p.312_315del	.	.	94.0	10.0	96.0	0.0	.	83	.	.	Atlas-Indel,Pindel
SNX29	92017	hgsc.bcm.edu	hg19	16	12497309	12497318	+	Frame_Shift_Del	DEL	AACCGGGCGC	AACCGGGCGC	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	AACCGGGCGC	AACCGGGCGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	SNX29	NM_032167	exon18	c.1959_1968del	p.653_656del	.	.	93.0	29.0	140.0	0.0	.	60	.	.	Atlas-Indel,Pindel
ZNF3	7551	hgsc.bcm.edu	hg19	7	99669473	99669494	+	Frame_Shift_Del	DEL	TTCGATTAAAGCTCTTGCTACA	TTCGATTAAAGCTCTTGCTACA	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	TTCGATTAAAGCTCTTGCTACA	TTCGATTAAAGCTCTTGCTACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	ZNF3,extremity,malignant_melanoma,0,1	ZNF3	NM_032924	exon6	c.614_635del	p.205_212del	.	.	157.0	17.0	92.0	0.0	.	54	.	.	Atlas-Indel,Pindel
CCDC14	64770	hgsc.bcm.edu	hg19	3	123634282	123634283	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CCDC14	NM_022757	exon12	c.2083_2084insT	p.S695_N696delinsX	.	.	93.0	23.0	113.0	0.0	.	97	.	.	Atlas-Indel,Pindel
RB1	5925	hgsc.bcm.edu	hg19	13	48936988	48936988	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	RB1	NM_000321	exon8	c.755delC	p.T252fs	.	.	216.0	34.0	384.0	0.0	.	1068	.	.	Atlas-Indel,Pindel
ARID1B	57492	hgsc.bcm.edu	hg19	6	157405805	157405805	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	ARID1B	NM_020732	exon6	c.2046delT	p.S682fs	.	.	69.0	10.0	80.0	0.0	.	320	.	.	Atlas-INDEL
CRIPT	9419	hgsc.bcm.edu	hg19	2	46846808	46846809	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CRIPT	NM_014171	exon3	c.125_126insA	p.S42fs	.	.	652.0	61.0	630.0	0.0	.	9	.	.	Pindel
STIL	6491	hgsc.bcm.edu	hg19	1	47746094	47746131	+	Frame_Shift_Del	DEL	TTGCTGTGGGGAGAACAACTGCCCATATCTCCCTGAGG	TTGCTGTGGGGAGAACAACTGCCCATATCTCCCTGAGG	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	TTGCTGTGGGGAGAACAACTGCCCATATCTCCCTGAGG	TTGCTGTGGGGAGAACAACTGCCCATATCTCCCTGAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	STIL	NM_003035	exon12	c.2000_2037del	p.667_679del	.	.	113.0	11.0	133.0	0.0	.	91	.	.	Pindel
NTRK2	4915	hgsc.bcm.edu	hg19	9	87359975	87359975	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	NTRK2	NM_001018066	exon11	c.1282delC	p.R428fs	.	.	188.0	17.0	157.0	0.0	.	331	.	.	Pindel
CCDC50	152137	hgsc.bcm.edu	hg19	3	191093079	191093080	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-DD-AADM-01A-11D-A40R-10	TCGA-DD-AADM-10A-01D-A40U-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3f5bd9c-15d2-40c2-8a80-2e79612b0da2	240c9f1e-b53f-41d5-a4cb-6249427390ad	.	CCDC50	NM_178335	exon6	c.676_677del	p.226_226del	.	.	180.0	17.0	190.0	0.0	.	39	.	.	Pindel