Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
HP1BP3	50809	hgsc.bcm.edu	hg19	1	21072039	21072039	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	HP1BP3	NM_016287	exon12	c.G1364C	p.R455T	CACCTTCTCTTAG	.	56.0	34.0	78.0	0.0	.	47	.	.	Atlas-SNP
ZNF436	80818	hgsc.bcm.edu	hg19	1	23689582	23689582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ZNF436	NM_001077195	exon4	c.G293A	p.S98N	TCTCCGCTTTCAA	.	57.0	34.0	105.0	0.0	.	49	.	.	Atlas-SNP
TTLL7	79739	hgsc.bcm.edu	hg19	1	84386928	84386928	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	TTLL7	NM_024686	exon12	c.1290+2T>C	.	TTTCATACCAACT	.	108.0	41.0	107.0	0.0	.	93	.	.	Atlas-SNP
TMEM56	148534	hgsc.bcm.edu	hg19	1	95609526	95609526	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	TMEM56	NM_001199679	exon2	c.C69G	p.F23L	TCTTTTCTACTTT	.	118.0	51.0	148.0	0.0	.	24	.	.	Atlas-SNP
AMPD1	270	hgsc.bcm.edu	hg19	1	115223060	115223060	+	Missense_Mutation	SNP	C	C	T	rs149424604		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	AMPD1_ENST00000520113,colon,carcinoma,0,4	AMPD1	NM_000036	exon6	c.G686A	p.R229Q	TCTGTTCGGAAGG	.	119.0	31.0	146.0	0.0	.	223	.	C|1.000;T|0.000	Atlas-SNP
NOTCH2	4853	hgsc.bcm.edu	hg19	1	120484359	120484359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	NOTCH2	NM_001200001	exon18	c.G2771T	p.G924V	CAGGAACCTCCAT	.	280.0	109.0	268.0	0.0	.	348	.	.	Atlas-SNP
PFDN2	5202	hgsc.bcm.edu	hg19	1	161070507	161070507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	PFDN2	NM_012394	exon4	c.C431A	p.A144D	GCCTTAGCCCCAG	.	128.0	6.0	140.0	0.0	.	10	.	.	Atlas-SNP
C1orf226	400793	hgsc.bcm.edu	hg19	1	162353116	162353116	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	C1orf226	NM_001135240	exon3	c.A591G	p.P197P	AGAGCCATCACCT	.	191.0	73.0	170.0	0.0	.	49	.	.	Atlas-SNP
DENND1B	163486	hgsc.bcm.edu	hg19	1	197704827	197704827	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	DENND1B	NM_001195216	exon3	c.T182A	p.V61E	GGCGCTACGCCAG	.	60.0	19.0	61.0	0.0	.	108	.	.	Atlas-SNP
NVL	4931	hgsc.bcm.edu	hg19	1	224415337	224415337	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	NVL	NM_002533	exon23	c.C2562T	p.L854L	CCGGCTGAGGGAC	.	362.0	103.0	420.0	0.0	.	74	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228487195	228487195	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	OBSCN	NM_001271223	exon50	c.G13446A	p.E4482E	GCAGGAGAGGACC	.	38.0	7.0	29.0	0.0	.	2142	.	.	Atlas-SNP
EXOC8	149371	hgsc.bcm.edu	hg19	1	231472537	231472537	+	Nonsense_Mutation	SNP	C	C	A	rs144793875	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	EXOC8	NM_175876	exon1	c.G955T	p.E319X	CTGGTTCTTCTTC	.	95.0	36.0	98.0	0.0	.	42	.	C|0.997;G|0.003	Atlas-SNP
MOGS	7841	hgsc.bcm.edu	hg19	2	74692368	74692368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	MOGS	NM_006302	exon1	c.C7T	p.R3W	CGCCCCGAGCCAT	.	187.0	86.0	249.0	1.0	.	58	.	.	Atlas-SNP
M1AP	130951	hgsc.bcm.edu	hg19	2	74842177	74842177	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	.	NM_138804	exon3	c.C340T	p.L114L	CTGCCAGCCGCAG	.	112.0	42.0	127.0	0.0	.	.	.	.	Atlas-SNP
SCN2A	6326	hgsc.bcm.edu	hg19	2	166172100	166172100	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	SCN2A	NM_001040143	exon10	c.G1503T	p.L501L	AGAGCTGAAAAAC	.	155.0	53.0	178.0	0.0	.	589	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179474547	179474547	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	TTN	NM_001267550	exon272	c.G51603T	p.L17201L	TGGTACCAGGTGT	.	159.0	35.0	186.0	0.0	.	18412	.	.	Atlas-SNP
ABI2	10152	hgsc.bcm.edu	hg19	2	204267450	204267450	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	ABI2,colon,carcinoma,0,1	ABI2	NM_005759	exon7	c.G984C	p.Q328H	TAGCCAGAATCCA	.	165.0	58.0	191.0	0.0	.	44	.	.	Atlas-SNP
PSMD1	5707	hgsc.bcm.edu	hg19	2	232028365	232028365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	PSMD1	NM_002807	exon21	c.A2405G	p.Y802C	TTCAGTATAAATC	.	81.0	33.0	122.0	0.0	.	77	.	.	Atlas-SNP
ALPI	248	hgsc.bcm.edu	hg19	2	233323747	233323747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ALPI	NM_001631	exon11	c.G1478A	p.C493Y	CGGCCTGCGACCT	.	76.0	37.0	121.0	0.0	.	64	.	.	Atlas-SNP
IL17RC	84818	hgsc.bcm.edu	hg19	3	9975230	9975230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	IL17RC	NM_153461	exon19	c.C2329T	p.R777C	CCGGGACGCGGGG	.	80.0	22.0	104.0	0.0	.	55	.	.	Atlas-SNP
SATB1	6304	hgsc.bcm.edu	hg19	3	18390666	18390666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	SATB1	NM_001195470	exon12	c.A2384G	p.D795G	TCTCAGTCTTTCA	.	125.0	42.0	138.0	0.0	.	96	.	.	Atlas-SNP
RNF123	63891	hgsc.bcm.edu	hg19	3	49753432	49753432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	RNF123	NM_022064	exon33	c.C3328T	p.R1110C	CTGCGGCGTCTTG	.	51.0	23.0	48.0	0.0	.	100	.	.	Atlas-SNP
MST1R	4486	hgsc.bcm.edu	hg19	3	49932696	49932696	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	MST1R	NM_002447	exon14	c.C3175T	p.L1059L	CCCTTAGCTGGAT	.	146.0	43.0	114.0	0.0	.	205	.	.	Atlas-SNP
CPOX	1371	hgsc.bcm.edu	hg19	3	98299597	98299597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	CPOX	NM_000097	exon7	c.C1295T	p.S432L	GAGGGTGAATGCA	.	105.0	30.0	111.0	0.0	.	34	.	.	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121208342	121208342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	POLQ	NM_199420	exon16	c.G3436A	p.V1146M	AAGTCACATTTTT	.	119.0	45.0	140.0	0.0	.	273	.	.	Atlas-SNP
OSBPL11	114885	hgsc.bcm.edu	hg19	3	125271474	125271474	+	Missense_Mutation	SNP	T	T	C	rs375600104		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	OSBPL11	NM_022776	exon9	c.A1205G	p.Y402C	TCTGCATACATTT	.	133.0	40.0	127.0	0.0	.	64	.	.	Atlas-SNP
EFCC1	79825	hgsc.bcm.edu	hg19	3	128753168	128753168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	.	NM_024768	exon5	c.A1445G	p.E482G	CTGAGGAGGAGGT	.	53.0	24.0	81.0	0.0	.	.	.	.	Atlas-SNP
EFCAB12	90288	hgsc.bcm.edu	hg19	3	129127685	129127685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	.	NM_207307	exon6	c.T1052C	p.I351T	TACTGGATGGAGG	.	118.0	56.0	119.0	0.0	.	.	.	.	Atlas-SNP
MBNL1	4154	hgsc.bcm.edu	hg19	3	152173338	152173338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	MBNL1	NM_021038	exon7	c.A969G	p.I323M	CTCAATATTGTGC	.	97.0	30.0	104.0	0.0	.	100	.	.	Atlas-SNP
LDB2	9079	hgsc.bcm.edu	hg19	4	16900005	16900005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	LDB2	NM_001290	exon1	c.T104C	p.M35T	TTGTTCATCTCAT	.	104.0	31.0	145.0	0.0	.	129	.	.	Atlas-SNP
PDS5A	23244	hgsc.bcm.edu	hg19	4	39904058	39904058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	PDS5A	NM_001100399	exon13	c.G1408T	p.A470S	ACTGAGCAAAGAT	.	197.0	72.0	271.0	0.0	.	114	.	.	Atlas-SNP
ANKRD17	26057	hgsc.bcm.edu	hg19	4	73943157	73943157	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ANKRD17	NM_032217	exon32	c.A7502C	p.E2501A	TCTCGCTCCATTG	.	73.0	6.0	132.0	0.0	.	214	.	.	Atlas-SNP
TRPC3	7222	hgsc.bcm.edu	hg19	4	122853582	122853582	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	TRPC3_ENST00000379645,NS,carcinoma,-1,1	TRPC3	NM_001130698	exon2	c.G831A	p.R277R	GTCGTGCCTCTGC	.	105.0	9.0	177.0	0.0	.	201	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126336041	126336041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	FAT4	NM_024582	exon5	c.A5923T	p.I1975F	TCAGGCATCAACT	.	92.0	6.0	164.0	0.0	.	1752	.	.	Atlas-SNP
PHF17	79960	hgsc.bcm.edu	hg19	4	129778563	129778563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	PHF17	NM_199320	exon8	c.C935A	p.A312E	GGTGGGCGCTAGT	.	96.0	50.0	151.0	0.0	.	63	.	.	Atlas-SNP
ABCE1	6059	hgsc.bcm.edu	hg19	4	146041189	146041189	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ABCE1	NM_002940	exon11	c.A1028C	p.K343T	AAGTTAAAAAGAT	.	156.0	77.0	253.0	1.0	.	47	.	.	Atlas-SNP
PLCXD3	345557	hgsc.bcm.edu	hg19	5	41382514	41382514	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	PLCXD3	NM_001005473	exon2	c.T226A	p.W76R	CTAACCATTTCCG	.	89.0	33.0	114.0	0.0	.	86	.	.	Atlas-SNP
ZNF474	133923	hgsc.bcm.edu	hg19	5	121488330	121488330	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ZNF474	NM_207317	exon2	c.C645T	p.T215T	TGGAACCCCAGCC	.	118.0	46.0	133.0	0.0	.	43	.	.	Atlas-SNP
PCDHGB4	8641	hgsc.bcm.edu	hg19	5	140768944	140768944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	PCDHGB4	NM_032098	exon1	c.A1493G	p.E498G	AGCGGGAGCTGTC	.	139.0	45.0	135.0	0.0	.	125	.	.	Atlas-SNP
DPCR1	135656	hgsc.bcm.edu	hg19	6	30918187	30918187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	DPCR1	NM_080870	exon2	c.C1946T	p.A649V	TGACAGCCAACGA	.	114.0	47.0	158.0	0.0	.	99	.	.	Atlas-SNP
C2	717	hgsc.bcm.edu	hg19	6	31895872	31895872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	C2	NM_000063	exon2	c.C187A	p.L63M	TCACGGCTGTGCA	.	58.0	22.0	74.0	0.0	.	50	.	.	Atlas-SNP
ATF6B	1388	hgsc.bcm.edu	hg19	6	32085446	32085446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ATF6B	NM_004381	exon13	c.G1450A	p.A484T	CCTTGGCGCCCCC	.	92.0	4.0	89.0	0.0	.	40	.	.	Atlas-SNP
C6orf222	389384	hgsc.bcm.edu	hg19	6	36298079	36298079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	C6orf222	NM_001010903	exon2	c.C389T	p.S130F	TGCTGGGAGATAC	.	70.0	27.0	66.0	0.0	.	72	.	.	Atlas-SNP
GLTSCR1L	23506	hgsc.bcm.edu	hg19	6	42796515	42796515	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	.	NM_015349	exon5	c.C444G	p.S148S	AGCATCCTTTACT	.	105.0	41.0	121.0	0.0	.	.	.	.	Atlas-SNP
TBX18	9096	hgsc.bcm.edu	hg19	6	85446578	85446578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	TBX18	NM_001080508	exon8	c.C1649A	p.S550Y	CCTTGGGAAGAAA	.	160.0	62.0	208.0	0.0	.	131	.	.	Atlas-SNP
ASF1A	25842	hgsc.bcm.edu	hg19	6	119228720	119228720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ASF1A	NM_014034	exon4	c.T556C	p.W186R	AAGGGATGGTCCA	.	120.0	66.0	272.0	0.0	.	16	.	.	Atlas-SNP
SERAC1	84947	hgsc.bcm.edu	hg19	6	158535862	158535862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	SERAC1	NM_032861	exon15	c.A1643G	p.Y548C	AGAAGATAGCGAA	.	88.0	39.0	165.0	0.0	.	31	.	.	Atlas-SNP
USP42	84132	hgsc.bcm.edu	hg19	7	6189723	6189723	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	USP42	NM_032172	exon13	c.G1896A	p.V632V	GATTGTGAGCTCC	.	85.0	19.0	107.0	0.0	.	138	.	.	Atlas-SNP
DLX5	1749	hgsc.bcm.edu	hg19	7	96650094	96650094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	DLX5	NM_005221	exon3	c.G824A	p.G275D	AAGGAGCCCGGCG	.	96.0	32.0	114.0	0.0	.	52	.	.	Atlas-SNP
AGFG2	3268	hgsc.bcm.edu	hg19	7	100160302	100160302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	AGFG2	NM_006076	exon8	c.G1084A	p.G362R	GCCTTTGGAGGTG	.	25.0	12.0	48.0	0.0	.	44	.	.	Atlas-SNP
TRIM56	81844	hgsc.bcm.edu	hg19	7	100732328	100732328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	TRIM56	NM_030961	exon3	c.G1735A	p.V579M	GGCGAAGTGCAGT	.	31.0	10.0	31.0	0.0	.	123	.	.	Atlas-SNP
DLD	1738	hgsc.bcm.edu	hg19	7	107558474	107558474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	DLD	NM_000108	exon12	c.G1342A	p.D448N	TCGACAGACAGAG	.	176.0	34.0	201.0	0.0	.	72	.	.	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	hg19	7	107818532	107818532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	NRCAM	NM_001037132	exon23	c.G2877T	p.K959N	CACAATCTTCAAA	.	154.0	53.0	176.0	0.0	.	267	.	.	Atlas-SNP
RALYL	138046	hgsc.bcm.edu	hg19	8	85774619	85774619	+	Silent	SNP	A	A	C	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	RALYL	NM_001100391	exon6	c.A541C	p.R181R	ACTCGCAGGGGGA	.	119.0	16.0	71.0	0.0	.	123	.	.	Atlas-SNP
CDH17	1015	hgsc.bcm.edu	hg19	8	95182668	95182668	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	CDH17	NM_004063	exon9	c.G1023A	p.P341P	TGGTGACGGACAT	.	248.0	17.0	217.0	0.0	.	119	.	.	Atlas-SNP
CCIN	881	hgsc.bcm.edu	hg19	9	36169649	36169649	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	CCIN	NM_005893	exon1	c.C150A	p.S50S	TGTCTCCCCACTG	.	152.0	62.0	179.0	0.0	.	56	.	.	Atlas-SNP
FOXB2	442425	hgsc.bcm.edu	hg19	9	79635418	79635418	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	FOXB2	NM_001013735	exon1	c.T848A	p.V283E	AGGGCGTGCTGCA	.	74.0	24.0	97.0	0.0	.	71	.	.	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	hg19	9	79922965	79922965	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	VPS13A	NM_001018038	exon35	c.A4065G	p.Q1355Q	AGACCAATACAGT	.	280.0	71.0	375.0	0.0	.	735	.	.	Atlas-SNP
THNSL1	79896	hgsc.bcm.edu	hg19	10	25312662	25312662	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	THNSL1	NM_024838	exon3	c.A510T	p.T170T	GAAGACAGATAGG	.	54.0	20.0	71.0	0.0	.	70	.	.	Atlas-SNP
LDB3	11155	hgsc.bcm.edu	hg19	10	88428477	88428477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	LDB3	NM_007078	exon1	c.C29A	p.P10H	CTGGGCCCGGGCC	.	89.0	18.0	120.0	0.0	.	164	.	.	Atlas-SNP
IFITM3	10410	hgsc.bcm.edu	hg19	11	320798	320798	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	IFITM3	NM_021034	exon1	c.C16T	p.Q6X	AGGTTTGGACAGT	.	30.0	7.0	42.0	0.0	.	132	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1275529	1275529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	MUC5B	NM_002458	exon34	c.C15425A	p.S5142Y	ACAAGTCCATGGA	.	49.0	16.0	47.0	0.0	.	473	.	.	Atlas-SNP
ELP4	26610	hgsc.bcm.edu	hg19	11	31653846	31653846	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ELP4	NM_019040	exon7	c.A821C	p.N274T	CAGAAAATGGTGG	.	110.0	30.0	118.0	0.0	.	78	.	.	Atlas-SNP
ATM	472	hgsc.bcm.edu	hg19	11	108117798	108117798	+	Missense_Mutation	SNP	C	C	T	rs138398778	bycluster	TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	ATM_ENST00000278616,NS,adenocarcinoma,-1,16	ATM	NM_000051	exon8	c.C1009T	p.R337C	GGATTTCGTAATA	.	208.0	66.0	239.0	0.0	.	1657	.	C|1.000;T|0.000	Atlas-SNP
ROBO3	64221	hgsc.bcm.edu	hg19	11	124743649	124743649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ROBO3	NM_022370	exon11	c.C1675T	p.P559S	GGGGCTCCCTCTC	.	66.0	23.0	69.0	0.0	.	199	.	.	Atlas-SNP
BARX2	8538	hgsc.bcm.edu	hg19	11	129306802	129306802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	BARX2	NM_003658	exon2	c.C344A	p.A115D	GCGAGGCCCTAGC	.	173.0	17.0	163.0	0.0	.	40	.	.	Atlas-SNP
IQSEC3	440073	hgsc.bcm.edu	hg19	12	248119	248119	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	IQSEC3	NM_001170738	exon4	c.C1590A	p.G530G	GCAGGGCGAGACC	.	68.0	27.0	69.0	0.0	.	154	.	.	Atlas-SNP
SLC6A12	6539	hgsc.bcm.edu	hg19	12	301770	301770	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	SLC6A12	NM_001122848	exon15	c.C1575T	p.Y525Y	GTTGTTGTACTTG	.	194.0	55.0	173.0	0.0	.	60	.	.	Atlas-SNP
TROAP	10024	hgsc.bcm.edu	hg19	12	49725143	49725143	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	TROAP	NM_005480	exon14	c.G2245C	p.V749L	ACCCGGGTCTGCA	.	95.0	30.0	74.0	0.0	.	80	.	.	Atlas-SNP
PFDN5	5204	hgsc.bcm.edu	hg19	12	53691669	53691669	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	PFDN5	NM_002624	exon4	c.C243T	p.H81H	GGAACACGTGCTC	.	105.0	11.0	119.0	0.0	.	16	.	.	Atlas-SNP
SP1	6667	hgsc.bcm.edu	hg19	12	53776141	53776141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	SP1	NM_138473	exon3	c.C410T	p.S137F	AGTCTTCCAAGAA	.	103.0	35.0	132.0	0.0	.	57	.	.	Atlas-SNP
ATP2A2	488	hgsc.bcm.edu	hg19	12	110778773	110778773	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ATP2A2	NM_001681	exon14	c.C2071T	p.Q691X	TTTCTTCAGTCTT	.	136.0	36.0	146.0	0.0	.	78	.	.	Atlas-SNP
AQP9	366	hgsc.bcm.edu	hg19	15	58430833	58430833	+	Silent	SNP	G	G	A	rs370186994		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	AQP9	NM_020980	exon1	c.G69A	p.A23A	CTTAGCGAAAGAA	.	150.0	49.0	153.0	0.0	.	39	.	.	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	hg19	15	65702586	65702586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	IGDCC4	NM_020962	exon3	c.C493T	p.H165Y	CAATGTGGCACTC	.	30.0	6.0	54.0	0.0	.	95	.	.	Atlas-SNP
DNAJA4	55466	hgsc.bcm.edu	hg19	15	78568034	78568034	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	DNAJA4	NM_018602	exon6	c.T928C	p.L310L	AAAACATTGGACA	.	65.0	19.0	69.0	0.0	.	63	.	.	Atlas-SNP
RGMA	56963	hgsc.bcm.edu	hg19	15	93588470	93588470	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	RGMA	NM_001166283	exon4	c.G1135T	p.E379X	GGTCCTCCACCGG	.	113.0	34.0	129.0	0.0	.	49	.	.	Atlas-SNP
GNPTG	84572	hgsc.bcm.edu	hg19	16	1411878	1411878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	GNPTG	NM_032520	exon5	c.A239C	p.K80T	GGTACAAGTATGA	.	42.0	12.0	63.0	0.0	.	18	.	.	Atlas-SNP
GUCY2D	3000	hgsc.bcm.edu	hg19	17	7916472	7916472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	GUCY2D	NM_000180	exon11	c.G2165A	p.R722Q	AGCGCCGGGGAAC	.	48.0	29.0	77.0	0.0	.	82	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	hg19	17	45219595	45219595	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	CDC27	NM_001114091	exon11	c.G1396T	p.E466X	ACAGACCTGCTGC	.	272.0	78.0	276.0	0.0	.	337	.	.	Atlas-SNP
KCNH6	81033	hgsc.bcm.edu	hg19	17	61620964	61620964	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	KCNH6	NM_030779	exon10	c.C2176T	p.R726X	TCCCCCCGACAGG	.	169.0	60.0	176.0	0.0	.	122	.	.	Atlas-SNP
GRIN2C	2905	hgsc.bcm.edu	hg19	17	72846852	72846852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	GRIN2C	NM_000835	exon5	c.T1168C	p.Y390H	CACTGTAGCGAGG	.	177.0	48.0	187.0	0.0	.	144	.	.	Atlas-SNP
HAUS1	115106	hgsc.bcm.edu	hg19	18	43708091	43708091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	HAUS1	NM_138443	exon9	c.A837G	p.X279W	ACTGTGACAAAAG	.	397.0	88.0	452.0	0.0	.	22	.	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	hg19	18	44137363	44137363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	LOXHD1	NM_144612	exon21	c.G3306T	p.W1102C	CAGGAACCAGCCT	.	165.0	28.0	149.0	0.0	.	367	.	.	Atlas-SNP
MBP	4155	hgsc.bcm.edu	hg19	18	74728894	74728894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	MBP	NM_001025100	exon4	c.A470G	p.H157R	CTGGCATGGTCCA	.	96.0	24.0	138.0	0.0	.	45	.	.	Atlas-SNP
ZNF441	126068	hgsc.bcm.edu	hg19	19	11891553	11891553	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ZNF441	NM_152355	exon4	c.A914T	p.D305V	CTGGAGATGGGCC	.	81.0	29.0	140.0	0.0	.	123	.	.	Atlas-SNP
GIPC1	10755	hgsc.bcm.edu	hg19	19	14591237	14591237	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	GIPC1,NS,carcinoma,0,1	GIPC1	NM_202468	exon5	c.G535T	p.E179X	TGGCCTCGATCAT	.	122.0	40.0	146.0	1.0	.	21	.	.	Atlas-SNP
ZNF507	22847	hgsc.bcm.edu	hg19	19	32845669	32845669	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ZNF507	NM_001136156	exon3	c.C1933T	p.L645L	TGCCGCCTGTGTC	.	135.0	35.0	168.0	0.0	.	92	.	.	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	hg19	19	40368348	40368348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	FCGBP	NM_003890	exon28	c.G13000A	p.A4334T	CAGCGGCCTGGCA	.	323.0	51.0	343.0	0.0	.	416	.	.	Atlas-SNP
ZNF135	7694	hgsc.bcm.edu	hg19	19	58579348	58579348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	ZNF135_ENST00000401053,NS,carcinoma,0,2	ZNF135	NM_007134	exon4	c.G1568A	p.C523Y	ATGACTGCGGCAA	.	92.0	29.0	107.0	0.0	.	159	.	.	Atlas-SNP
ZCCHC3	85364	hgsc.bcm.edu	hg19	20	278367	278367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ZCCHC3	NM_033089	exon1	c.T140C	p.L47P	AGAATCTAGCCGA	.	75.0	16.0	80.0	0.0	.	20	.	.	Atlas-SNP
CDH4	1002	hgsc.bcm.edu	hg19	20	60448832	60448832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	CDH4	NM_001794	exon7	c.C926A	p.T309K	GCACCACGGCCAA	.	85.0	35.0	91.0	0.0	.	172	.	.	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	hg19	21	46912479	46912479	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	COL18A1	NM_130445	exon23	c.2187+1G>A	.	CCTGAGGTATGTG	.	75.0	11.0	136.0	0.0	.	129	.	.	Atlas-SNP
PNPLA5	150379	hgsc.bcm.edu	hg19	22	44282291	44282291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	PNPLA5	NM_138814	exon6	c.G841A	p.G281S	CACAGCCAGCATC	.	70.0	12.0	70.0	0.0	.	46	.	.	Atlas-SNP
SPANXC	64663	hgsc.bcm.edu	hg19	X	140336533	140336533	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	SPANXC	NM_022661	exon1	c.G58T	p.E20X	TCACCTCGTTGGA	.	287.0	209.0	310.0	1.0	.	8	.	.	Atlas-SNP
LYST	1130	hgsc.bcm.edu	hg19	1	235916449	235916451	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.,1	LYST	NM_000081	exon26	c.7354_7356del	p.2452_2452del	.	.	375.0	118.0	381.0	0.0	.	370	.	.	Atlas-INDEL
HARS2	23438	hgsc.bcm.edu	hg19	5	140075365	140075365	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	HARS2	NM_012208	exon6	c.567delT	p.D189fs	.	.	130.0	42.0	155.0	0.0	.	41	.	.	Atlas-INDEL
NHS	4810	hgsc.bcm.edu	hg19	X	17745169	17745169	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	NHS	NM_198270	exon6	c.2879delC	p.P960fs	.	.	124.0	93.0	144.0	0.0	.	302	.	.	Atlas-INDEL
SIGLEC9	27180	hgsc.bcm.edu	hg19	19	51633222	51633222	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	SIGLEC9	NM_014441	exon7	c.1277delT	p.V426fs	.	.	67.0	21.0	73.0	0.0	.	85	.	.	Atlas-INDEL
MED28	80306	hgsc.bcm.edu	hg19	4	17616334	17616342	+	In_Frame_Del	DEL	CCCGCCGGG	CCCGCCGGG	-	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	CCCGCCGGG	CCCGCCGGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	MED28	NM_025205	exon1	c.56_64del	p.19_22del	.	.	108.0	42.0	139.0	0.0	.	16	.	.	Atlas-INDEL
SRRT	51593	hgsc.bcm.edu	hg19	7	100483551	100483552	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	SRRT	NM_001128853	exon12	c.1447_1448insA	p.Q483fs	.	.	100.0	36.0	141.0	0.0	.	108	.	.	Atlas-INDEL
WDR38	401551	hgsc.bcm.edu	hg19	9	127619833	127619834	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	WDR38	NM_001276374	exon9	c.872_873insA	p.L291fs	.	.	89.0	15.0	95.0	0.0	.	21	.	.	Atlas-INDEL
ARID1A	8289	hgsc.bcm.edu	hg19	1	27023388	27023388	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AADR-01A-11D-A40R-10	TCGA-DD-AADR-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	78443fc5-5436-4636-afe8-df7854f7d17e	eb002cc9-e23b-4133-aac1-7b82257351cd	.	ARID1A	NM_139135	exon1	c.493delG	p.A165fs	.	.	36.0	18.0	69.0	0.0	.	842	.	.	Atlas-INDEL