Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm EBNA1BP2 10969 hgsc.bcm.edu hg19 1 43637724 43637724 + Silent SNP C C T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . EBNA1BP2 NM_001159936 exon2 c.G231A p.E77E ACCTACCTCTCTG . 48.0 31.0 75.0 0.0 . 37 . . Atlas-SNP OLFML2B 25903 hgsc.bcm.edu hg19 1 161989734 161989734 + Missense_Mutation SNP C C T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . OLFML2B NM_015441 exon2 c.G413A p.R138Q GCCTCCCGCAGCT . 164.0 107.0 73.0 0.0 . 114 . . Atlas-SNP CFHR4 10877 hgsc.bcm.edu hg19 1 196881942 196881942 + Missense_Mutation SNP A A T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . CFHR4 NM_001201550 exon7 c.A1070T p.N357I TTTTAAATAAAGA . 1144.0 198.0 571.0 0.0 . 141 . . Atlas-SNP CACNA1S 779 hgsc.bcm.edu hg19 1 201018205 201018205 + Missense_Mutation SNP C C T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . CACNA1S NM_000069 exon35 c.G4264A p.V1422M TCACCACGTCCAG . 80.0 42.0 25.0 0.0 . 249 . . Atlas-SNP ZNF678 339500 hgsc.bcm.edu hg19 1 227843476 227843476 + Silent SNP A A C novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . ZNF678 NM_178549 exon4 c.A1690C p.R564R TATAAGAGAATTT . 404.0 82.0 253.0 0.0 . 137 . . Atlas-SNP VIT 5212 hgsc.bcm.edu hg19 2 36982071 36982071 + Missense_Mutation SNP C C A novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . VIT NM_001177969 exon5 c.C283A p.L95I GGTGTGCTTGATA . 89.0 49.0 78.0 0.0 . 138 . . Atlas-SNP AOX1 316 hgsc.bcm.edu hg19 2 201526345 201526345 + Missense_Mutation SNP G G C novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . AOX1 NM_001159 exon30 c.G3419C p.G1140A CTGTTGGATACTT . 74.0 33.0 80.0 0.0 . 152 . . Atlas-SNP PTPRN 5798 hgsc.bcm.edu hg19 2 220172166 220172166 + Nonsense_Mutation SNP C C A novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . PTPRN NM_002846 exon3 c.G280T p.G94X CCTTACCTTGGGA . 54.0 17.0 49.0 0.0 . 138 . . Atlas-SNP LAP3 51056 hgsc.bcm.edu hg19 4 17586622 17586622 + Silent SNP A A T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . LAP3 NM_015907 exon6 c.A567T p.G189G GAAAGGAGTCCTG . 73.0 33.0 97.0 0.0 . 50 . . Atlas-SNP CTNND2 1501 hgsc.bcm.edu hg19 5 11732327 11732327 + Missense_Mutation SNP C C T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . CTNND2 NM_001332 exon2 c.G95A p.S32N CCGGGGCTCAGGG . 51.0 24.0 74.0 0.0 . 289 . . Atlas-SNP AP3B1 8546 hgsc.bcm.edu hg19 5 77471662 77471662 + Missense_Mutation SNP C C A novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . AP3B1 NM_003664 exon10 c.G1041T p.R347S CACCTCCCTAGAA . 138.0 55.0 135.0 0.0 . 94 . . Atlas-SNP PCDHB12 56124 hgsc.bcm.edu hg19 5 140589015 140589015 + Missense_Mutation SNP A A T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . PCDHB12 NM_018932 exon1 c.A536T p.H179L ATTTCCACGTTAA . 130.0 58.0 116.0 0.0 . 179 . . Atlas-SNP KIAA0141 9812 hgsc.bcm.edu hg19 5 141318088 141318088 + Missense_Mutation SNP C C T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . KIAA0141 NM_001142603 exon12 c.C1312T p.P438S GTAGCCCCGGGGC . 60.0 25.0 58.0 0.0 . 44 . . Atlas-SNP ABCB5 340273 hgsc.bcm.edu hg19 7 20683148 20683148 + Missense_Mutation SNP A A G novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . ABCB5 NM_001163941 exon7 c.A571G p.T191A ATGTCTACTTTTT . 124.0 47.0 160.0 0.0 . 357 . . Atlas-SNP TONSL 4796 hgsc.bcm.edu hg19 8 145668159 145668159 + Missense_Mutation SNP A A G novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . TONSL NM_013432 exon5 c.T479C p.M160T GTCCTCATCTCAT . 127.0 37.0 59.0 0.0 . 128 . . Atlas-SNP KIAA0020 9933 hgsc.bcm.edu hg19 9 2810431 2810431 + Missense_Mutation SNP G G T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 KIAA0020,NS,carcinoma,0,1 KIAA0020 NM_014878 exon16 c.C1636A p.L546I TGTGAAGCTATGA . 53.0 3.0 69.0 0.0 . 56 . . Atlas-SNP BICD2 23299 hgsc.bcm.edu hg19 9 95481421 95481421 + Silent SNP C C T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . BICD2 NM_001003800 exon5 c.G1506A p.L502L CTTCTCCAGCCGG . 45.0 23.0 38.0 0.0 . 68 . . Atlas-SNP OGDHL 55753 hgsc.bcm.edu hg19 10 50950948 50950948 + Missense_Mutation SNP C C A novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 OGDHL,NS,carcinoma,0,1 OGDHL NM_018245 exon15 c.G1938T p.M646I AAAGGCCATGTAC . 53.0 19.0 35.0 0.0 . 149 . . Atlas-SNP ZNF143 7702 hgsc.bcm.edu hg19 11 9522758 9522758 + Missense_Mutation SNP G G A novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . ZNF143 NM_003442 exon11 c.G1088A p.G363E AGCCAGGATGTGG . 112.0 56.0 81.0 0.0 . 38 . . Atlas-SNP DCDC1 341019 hgsc.bcm.edu hg19 11 31312362 31312362 + Missense_Mutation SNP C C T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . DCDC1 NM_181807 exon7 c.G792A p.M264I CCCATTCATTGTC . 194.0 83.0 174.0 0.0 . 74 . . Atlas-SNP PGA5 5222 hgsc.bcm.edu hg19 11 61017209 61017209 + Missense_Mutation SNP C C G novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . PGA5 NM_014224 exon7 c.C842G p.S281C GCACCTCTCTGCT . 178.0 65.0 168.0 0.0 . 20 . . Atlas-SNP ZNF202 7753 hgsc.bcm.edu hg19 11 123600489 123600489 + Silent SNP C C T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . ZNF202 NM_003455 exon5 c.G447A p.T149T ATGCACCGTCTCC . 55.0 10.0 41.0 0.0 . 72 . . Atlas-SNP FGD4 121512 hgsc.bcm.edu hg19 12 32751494 32751494 + Missense_Mutation SNP G G A novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . FGD4 NM_139241 exon5 c.G664A p.V222I GCTTATGTCAACC . 97.0 40.0 91.0 0.0 . 86 . . Atlas-SNP ACACB 32 hgsc.bcm.edu hg19 12 109614034 109614034 + Missense_Mutation SNP A A T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . ACACB NM_001093 exon8 c.A1403T p.E468V AGGCTGAGAGTGC . 151.0 54.0 118.0 0.0 . 330 . . Atlas-SNP PCCA 5095 hgsc.bcm.edu hg19 13 100861682 100861682 + Missense_Mutation SNP G G T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . PCCA NM_001178004 exon7 c.G565T p.V189F GCAGAGGTTAATA . 112.0 44.0 90.0 0.0 . 59 . . Atlas-SNP TEP1 7011 hgsc.bcm.edu hg19 14 20852626 20852626 + Missense_Mutation SNP T T C rs201494870 bycluster TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . TEP1 NM_007110 exon23 c.A3263G p.Y1088C CCAACATAGGGCC . 63.0 26.0 42.0 0.0 . 224 . T|0.999;C|0.001 Atlas-SNP ZNF219 51222 hgsc.bcm.edu hg19 14 21561409 21561409 + Missense_Mutation SNP G G A novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . ZNF219 NM_001102454 exon3 c.C47T p.S16L GGCGGCGACGGCG . 18.0 10.0 25.0 0.0 . 28 . . Atlas-SNP EML5 161436 hgsc.bcm.edu hg19 14 89202828 89202828 + Missense_Mutation SNP A A G novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . EML5 NM_183387 exon7 c.T929C p.V310A TCTTGCACCACAA . 202.0 89.0 167.0 0.0 . 141 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 34021159 34021159 + Missense_Mutation SNP A A G novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . RYR3 NM_001243996 exon47 c.A7135G p.T2379A GATCAAACTTTTC . 60.0 10.0 84.0 0.0 . 760 . . Atlas-SNP AXIN1 8312 hgsc.bcm.edu hg19 16 396740 396740 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . AXIN1 NM_181050 exon2 c.C286T p.Q96X CATCTTGGTCATC . 28.0 21.0 54.0 0.0 . 290 . . Atlas-SNP KRT17 3872 hgsc.bcm.edu hg19 17 39777023 39777023 + Missense_Mutation SNP G G A rs374932182 TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 KRT17,right_upper_lobe,carcinoma,0,1 KRT17 NM_000422 exon6 c.C1069T p.R357C CGCAGCGAAGCTG . 130.0 52.0 136.0 0.0 . 57 . . Atlas-SNP SDK2 54549 hgsc.bcm.edu hg19 17 71390374 71390374 + Missense_Mutation SNP G G T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . SDK2 NM_001144952 exon26 c.C3682A p.R1228S CGTTGCGATCAGC . 58.0 24.0 42.0 0.0 . 219 . . Atlas-SNP SLC38A10 124565 hgsc.bcm.edu hg19 17 79257223 79257223 + Silent SNP G G A rs138694564 bycluster;byfrequency;alternate_allele TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . SLC38A10 NM_001037984 exon4 c.C343T p.L115L CGAACAGCCGGGC . 74.0 15.0 96.0 0.0 . 133 . G|0.999;T|0.001 Atlas-SNP MC4R 4160 hgsc.bcm.edu hg19 18 58039334 58039334 + Silent SNP G G T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . MC4R NM_005912 exon1 c.C249A p.I83I GCTGCAGATGAAA . 72.0 5.0 92.0 0.0 . 49 . . Atlas-SNP CBLN2 147381 hgsc.bcm.edu hg19 18 70209069 70209069 + Silent SNP G G A novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . CBLN2 NM_182511 exon3 c.C327T p.S109S GCGGTTGCTCATC . 34.0 9.0 29.0 0.0 . 41 . . Atlas-SNP MBP 4155 hgsc.bcm.edu hg19 18 74817196 74817196 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . MBP NM_001025100 exon2 c.C22T p.R8X ATTCTCGTTTGCC . 83.0 30.0 100.0 0.0 . 45 . . Atlas-SNP WIZ 58525 hgsc.bcm.edu hg19 19 15538111 15538111 + Missense_Mutation SNP T T C novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . WIZ NM_021241 exon4 c.A763G p.K255E TCATCTTGGCCAG . 79.0 35.0 78.0 0.0 . 152 . . Atlas-SNP VSTM2B 342865 hgsc.bcm.edu hg19 19 30054814 30054814 + Missense_Mutation SNP G G C rs140018368 by1000genomes;alternate_allele TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . VSTM2B NM_001146339 exon5 c.G831C p.K277N GCATAAGTTCCTG . 75.0 23.0 53.0 0.0 . 15 . G|1.000;T|0.000 Atlas-SNP KIRREL2 84063 hgsc.bcm.edu hg19 19 36351887 36351887 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . KIRREL2 NM_199180 exon8 c.G1005A p.W335X CGCCTGGCGCGGG . 62.0 32.0 45.0 0.0 . 170 . . Atlas-SNP CA11 770 hgsc.bcm.edu hg19 19 49143044 49143044 + Splice_Site SNP C C T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 CA11,NS,carcinoma,0,1 CA11 NM_001217 exon6 c.567+1G>A . CGCTCACGTTGAC . 106.0 45.0 92.0 0.0 . 29 . . Atlas-SNP ZNF329 79673 hgsc.bcm.edu hg19 19 58639289 58639289 + Silent SNP G G T rs143513293 bycluster;by1000genomes;alternate_allele TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 ZNF329,caecum,carcinoma,0,1 ZNF329 NM_024620 exon4 c.C1582A p.R528R GATGTCGAACAAG . 116.0 39.0 98.0 0.0 . 70 . G|1.000;A|0.000 Atlas-SNP BPIFA2 140683 hgsc.bcm.edu hg19 20 31767467 31767467 + Missense_Mutation SNP G G T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . . NM_080574 exon7 c.G703T p.V235F CAGCAGGTCGTCG . 65.0 25.0 50.0 0.0 . . . . Atlas-SNP ACTL10 170487 hgsc.bcm.edu hg19 20 32255993 32255993 + Silent SNP C C T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . . NM_001024675 exon1 c.C690T p.A230A TCGGGCCATGTAC . 82.0 38.0 64.0 0.0 . . . . Atlas-SNP RALY 22913 hgsc.bcm.edu hg19 20 32664877 32664877 + Silent SNP C C T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . RALY NM_016732 exon8 c.C702T p.G234G CGGCGGCGGTGGT . 127.0 6.0 110.0 0.0 . 44 . . Atlas-SNP ZNF280B 140883 hgsc.bcm.edu hg19 22 22842492 22842492 + Missense_Mutation SNP C C A novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . ZNF280B NM_080764 exon4 c.G1232T p.R411I GACGATCTATAAT . 173.0 77.0 148.0 0.0 . 67 . . Atlas-SNP CXorf40A 91966 hgsc.bcm.edu hg19 X 148627336 148627336 + Missense_Mutation SNP C C T novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . CXorf40A NM_178124 exon4 c.C160T p.R54W GCCTGGCGGGAGC . 274.0 234.0 232.0 0.0 . 15 . . Atlas-SNP IRS1 3667 hgsc.bcm.edu hg19 2 227661977 227661994 + In_Frame_Del DEL CGGTGGCCATTGCCACCC CGGTGGCCATTGCCACCC - novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 CGGTGGCCATTGCCACCC CGGTGGCCATTGCCACCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . IRS1 NM_005544 exon1 c.1462_1479del p.488_493del . . 71.0 19.0 77.0 0.0 . 141 . . Atlas-INDEL PAQR8 85315 hgsc.bcm.edu hg19 6 52268597 52268611 + In_Frame_Del DEL TATGCCAAATATCGT TATGCCAAATATCGT - novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 TATGCCAAATATCGT TATGCCAAATATCGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . PAQR8 NM_133367 exon2 c.585_599del p.195_200del . . 86.0 25.0 78.0 0.0 . 31 . . Atlas-INDEL ITGB3 3690 hgsc.bcm.edu hg19 17 45367587 45367591 + Frame_Shift_Del DEL GTTCT GTTCT - novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 GTTCT GTTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . ITGB3 NM_000212 exon8 c.1071_1075del p.357_359del . . 59.0 29.0 68.0 0.0 . 157 . . Atlas-INDEL SVEP1 79987 hgsc.bcm.edu hg19 9 113137745 113137746 + Splice_Site INS - - AAAAAA novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . SVEP1 NM_153366 exon47 c.10505-2->TTTTTT . . . 154.0 11.0 119.0 0.0 . 326 . . Atlas-INDEL NEFH 4744 hgsc.bcm.edu hg19 22 29885591 29885592 + In_Frame_Ins INS - - CCTGAGAAGGCCAAGTCC novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 .,2 NEFH NM_021076 exon4 c.1962_1963insCCTGAGAAGGCCAAGTCC p.S654delinsSPEKAKS . . 256.0 126.0 217.0 0.0 . 178 . . Atlas-INDEL A2M 2 hgsc.bcm.edu hg19 12 9227372 9227384 + In_Frame_Del DEL AGAGTTGTCTTAA AGAGTTGTCTTAA - novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 AGAGTTGTCTTAA AGAGTTGTCTTAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . A2M NM_000014 exon29 c.3533_3541del p.1178_1181del . . 112.0 33.0 116.0 0.0 . 180 . . Atlas-INDEL KCTD20 222658 hgsc.bcm.edu hg19 6 36454696 36454698 + In_Frame_Del DEL CTG CTG - novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 CTG CTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . KCTD20 NM_173562 exon8 c.1003_1005del p.335_335del . . 88.0 25.0 95.0 0.0 . 37 . . Atlas-INDEL KCTD20 222658 hgsc.bcm.edu hg19 6 36454686 36454694 + In_Frame_Del DEL AAGAGAAGG AAGAGAAGG - novel TCGA-DD-AAE1-01A-11D-A40R-10 TCGA-DD-AAE1-10A-01D-A40U-10 AAGAGAAGG AAGAGAAGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 55f49128-beb9-408f-8a1b-737659403573 9109a16c-3ae7-492e-8de3-bece8e8322d0 . KCTD20 NM_173562 exon8 c.993_1001del p.331_334del . . 89.0 25.0 94.0 0.0 . 37 . . Atlas-INDEL