Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
AKR7A2	8574	hgsc.bcm.edu	hg19	1	19630807	19630807	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	AKR7A2	NM_003689	exon7	c.A992C	p.E331A	CCTTCCTCTGTTG	.	203.0	20.0	202.0	0.0	.	19	.	.	Atlas-SNP
C1orf94	84970	hgsc.bcm.edu	hg19	1	34643459	34643459	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	C1orf94	NM_001134734	exon1	c.G69C	p.R23S	GAGGAGGATGGCC	.	80.0	29.0	49.0	0.0	.	156	.	.	Atlas-SNP
STIL	6491	hgsc.bcm.edu	hg19	1	47717255	47717255	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	STIL	NM_001048166	exon17	c.G3420A	p.E1140E	AGGTTCCTCTTCA	.	118.0	51.0	110.0	0.0	.	91	.	.	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	hg19	1	108247593	108247593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	VAV3	NM_006113	exon16	c.G1593C	p.Q531H	GAGCATCTGGCAG	.	103.0	51.0	91.0	0.0	.	176	.	.	Atlas-SNP
LRRN2	10446	hgsc.bcm.edu	hg19	1	204588798	204588798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	LRRN2	NM_006338	exon3	c.C323T	p.A108V	TCTCGGGCATCCG	.	286.0	79.0	164.0	0.0	.	81	.	.	Atlas-SNP
MTR	4548	hgsc.bcm.edu	hg19	1	236973846	236973846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	MTR	NM_000254	exon5	c.G453T	p.K151N	TAATAAGACACTC	.	205.0	133.0	155.0	1.0	.	127	.	.	Atlas-SNP
OR2G2	81470	hgsc.bcm.edu	hg19	1	247752346	247752346	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	OR2G2	NM_001001915	exon1	c.T685A	p.L229M	GCAGTGTTGAGGA	.	227.0	65.0	127.0	0.0	.	88	.	.	Atlas-SNP
CAPN13	92291	hgsc.bcm.edu	hg19	2	30993238	30993238	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	CAPN13	NM_144575	exon5	c.G465A	p.V155V	AGGACGCACAAAG	.	135.0	49.0	109.0	0.0	.	70	.	.	Atlas-SNP
EML6	400954	hgsc.bcm.edu	hg19	2	55056571	55056571	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	EML6	NM_001039753	exon6	c.A804G	p.P268P	CAAACCAATAACC	.	88.0	26.0	69.0	0.0	.	85	.	.	Atlas-SNP
GMCL1	64395	hgsc.bcm.edu	hg19	2	70106092	70106092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	GMCL1	NM_178439	exon14	c.A1504G	p.I502V	TTATATATCTGCT	.	230.0	90.0	217.0	0.0	.	50	.	.	Atlas-SNP
ITGB6	3694	hgsc.bcm.edu	hg19	2	161052880	161052880	+	Missense_Mutation	SNP	G	G	A	rs369726068	alternate_allele	TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ITGB6	NM_000888	exon3	c.C193T	p.L65F	CTAAAAGGTTTGC	.	117.0	39.0	99.0	0.0	.	68	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179456870	179456870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	TTN	NM_001267550	exon302	c.A59761G	p.S19921G	GGGCGCTGGCAAC	.	97.0	37.0	87.0	0.0	.	18412	.	.	Atlas-SNP
NDUFS1	4719	hgsc.bcm.edu	hg19	2	206991519	206991519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	NDUFS1	NM_001199984	exon17	c.G1976T	p.R659I	TCCAATCTGTTCC	.	177.0	68.0	164.0	0.0	.	82	.	.	Atlas-SNP
DAW1	164781	hgsc.bcm.edu	hg19	2	228767773	228767773	+	Missense_Mutation	SNP	C	C	A	rs145956341		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	.	NM_178821	exon7	c.C596A	p.T199K	TGGACACAACAGC	.	246.0	15.0	222.0	0.0	.	.	.	.	Atlas-SNP
ATP2B2	491	hgsc.bcm.edu	hg19	3	10384457	10384457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ATP2B2	NM_001001331	exon19	c.A2896G	p.I966V	TGAAGATGAGGGC	.	62.0	29.0	66.0	0.0	.	304	.	.	Atlas-SNP
KCNH8	131096	hgsc.bcm.edu	hg19	3	19554546	19554546	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	KCNH8	NM_144633	exon13	c.G2164T	p.E722X	GAGGAAGAGGAGG	.	240.0	96.0	167.0	0.0	.	189	.	.	Atlas-SNP
TCAIM	285343	hgsc.bcm.edu	hg19	3	44449133	44449133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	.	NM_173826	exon11	c.T1450C	p.C484R	GACCTTTGTATTC	.	268.0	96.0	248.0	0.0	.	.	.	.	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47084191	47084191	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	SETD2	NM_014159	exon18	c.7099-1G>T	.	TTCAGACTACAAA	.	104.0	37.0	108.0	0.0	.	721	.	.	Atlas-SNP
MGLL	11343	hgsc.bcm.edu	hg19	3	127441310	127441310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	MGLL	NM_007283	exon4	c.A362G	p.Y121C	CCAGGGTAGTCTT	.	105.0	42.0	110.0	0.0	.	19	.	.	Atlas-SNP
MGLL	11343	hgsc.bcm.edu	hg19	3	127540591	127540591	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	MGLL	NM_007283	exon2	c.A101C	p.N34T	TCTGCATTGACCA	.	90.0	32.0	95.0	0.0	.	19	.	.	Atlas-SNP
NPHP3	27031	hgsc.bcm.edu	hg19	3	132413781	132413781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	NPHP3	NM_153240	exon16	c.A2200G	p.I734V	GAAGGATTTTATC	.	95.0	34.0	93.0	0.0	.	110	.	.	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	hg19	3	151105931	151105931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	MED12L	NM_053002	exon35	c.C5317T	p.R1773C	AGGAAGCGCAAGA	.	21.0	9.0	19.0	0.0	.	271	.	.	Atlas-SNP
KNG1	3827	hgsc.bcm.edu	hg19	3	186459957	186459957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	KNG1	NM_001102416	exon10	c.T1772A	p.I591N	CTGATATCCAGAT	.	150.0	63.0	133.0	0.0	.	129	.	.	Atlas-SNP
RNF168	165918	hgsc.bcm.edu	hg19	3	196199524	196199524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	RNF168	NM_152617	exon6	c.A882G	p.I294M	GGACTCTATTGAA	.	148.0	51.0	115.0	0.0	.	49	.	.	Atlas-SNP
RNF168	165918	hgsc.bcm.edu	hg19	3	196199527	196199527	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	RNF168	NM_152617	exon6	c.A879C	p.S293S	CTCTATTGAAGAA	.	145.0	51.0	117.0	0.0	.	49	.	.	Atlas-SNP
ZAR1	326340	hgsc.bcm.edu	hg19	4	48496259	48496259	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ZAR1	NM_175619	exon4	c.T1273G	p.X425E	ATCATTTAGGTGA	.	49.0	16.0	65.0	0.0	.	15	.	.	Atlas-SNP
PPAT	5471	hgsc.bcm.edu	hg19	4	57261620	57261620	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	PPAT	NM_002703	exon11	c.T1452C	p.D484D	CATAATATCGTGC	.	322.0	116.0	298.0	1.0	.	41	.	.	Atlas-SNP
PAICS	10606	hgsc.bcm.edu	hg19	4	57312971	57312971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	PAICS	NM_001079525	exon4	c.C346T	p.L116F	TCTTTTCTCAAAA	.	264.0	114.0	244.0	0.0	.	21	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87643469	87643469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	PTPN13	NM_006264	exon10	c.G1490T	p.R497I	CCCTTAGACAGTC	.	408.0	163.0	382.0	0.0	.	203	.	.	Atlas-SNP
SLC25A31	83447	hgsc.bcm.edu	hg19	4	128689945	128689945	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	SLC25A31	NM_031291	exon5	c.C672T	p.V224V	TCTTGTCTCCTTT	.	99.0	32.0	85.0	0.0	.	42	.	.	Atlas-SNP
SNX25	83891	hgsc.bcm.edu	hg19	4	186244738	186244738	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	SNX25	NM_031953	exon9	c.A1041G	p.K347K	GAGCAAAGAAATA	.	106.0	5.0	202.0	0.0	.	100	.	.	Atlas-SNP
TERT	7015	hgsc.bcm.edu	hg19	5	1294122	1294122	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	TERT	NM_001193376	exon2	c.C879A	p.R293R	GGAGTGGCGCGTG	.	102.0	47.0	91.0	0.0	.	2594	.	.	Atlas-SNP
NNT	23530	hgsc.bcm.edu	hg19	5	43650682	43650682	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	NNT	NM_182977	exon12	c.C1710T	p.N570N	TGTCAACATTGCA	.	77.0	30.0	72.0	0.0	.	92	.	.	Atlas-SNP
HEXB	3074	hgsc.bcm.edu	hg19	5	74009421	74009421	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	HEXB	NM_000521	exon7	c.G862T	p.E288X	CTGCCAGAATTTG	.	160.0	57.0	121.0	0.0	.	34	.	.	Atlas-SNP
PCDHA13	56136	hgsc.bcm.edu	hg19	5	140264085	140264085	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	PCDHA13	NM_031865	exon1	c.G2232T	p.A744A	CAGCGCGGCAGGG	.	188.0	76.0	166.0	0.0	.	213	.	.	Atlas-SNP
GPLD1	2822	hgsc.bcm.edu	hg19	6	24466935	24466935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	GPLD1	NM_001503	exon10	c.C794A	p.T265K	AAGCTTGTTAGAT	.	137.0	51.0	141.0	0.0	.	91	.	.	Atlas-SNP
TRIM39	56658	hgsc.bcm.edu	hg19	6	30303626	30303626	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	TRIM39	NM_172016	exon5	c.G654A	p.E218E	AGAAGAGGAACAG	.	149.0	66.0	109.0	0.0	.	56	.	.	Atlas-SNP
TRAM2	9697	hgsc.bcm.edu	hg19	6	52369497	52369497	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	TRAM2	NM_012288	exon10	c.A931T	p.I311F	AGTGGATGAAGCG	.	47.0	24.0	39.0	0.0	.	27	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	65612046	65612046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	EYS	NM_001142800	exon18	c.C2806T	p.P936S	TGCAAGGTTCAGA	.	367.0	15.0	311.0	0.0	.	527	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75860905	75860905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	COL12A1	NM_004370	exon21	c.A4099G	p.I1367V	CCACTATCCTGGA	.	94.0	33.0	75.0	0.0	.	385	.	.	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	hg19	6	160468364	160468364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	IGF2R	NM_000876	exon16	c.A2225G	p.Y742C	CTGAATATCAGGT	.	39.0	11.0	25.0	0.0	.	251	.	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	hg19	7	5352635	5352635	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	TNRC18	NM_001080495	exon27	c.A7887C	p.S2629S	GGAGGATGAGGAG	.	5.0	4.0	2.0	0.0	.	311	.	.	Atlas-SNP
LIMK1	3984	hgsc.bcm.edu	hg19	7	73520215	73520215	+	Missense_Mutation	SNP	G	G	T	rs406970	byhapmap;alternate_allele	TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	LIMK1	NM_002314	exon6	c.G619T	p.G207C	GATCCGGGCTGCA	.	93.0	24.0	61.0	0.0	.	55	.	G|1.000;|0.000	Atlas-SNP
STYXL1	51657	hgsc.bcm.edu	hg19	7	75659739	75659739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	STYXL1	NM_016086	exon2	c.G103A	p.D35N	ACTTACCCAATAA	.	162.0	57.0	90.0	0.0	.	35	.	.	Atlas-SNP
SEMA3A	10371	hgsc.bcm.edu	hg19	7	83610698	83610698	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	SEMA3A	NM_006080	exon14	c.C1591A	p.R531R	GGTCTCGGGCGAG	.	261.0	73.0	147.0	0.0	.	121	.	.	Atlas-SNP
FAM185A	222234	hgsc.bcm.edu	hg19	7	102448814	102448814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	FAM185A	NM_001145268	exon8	c.C1144A	p.Q382K	AGAAGGCAAAGTT	.	144.0	38.0	81.0	0.0	.	10	.	.	Atlas-SNP
TRPV5	56302	hgsc.bcm.edu	hg19	7	142605860	142605860	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	TRPV5	NM_019841	exon15	c.G2010A	p.G670G	CTCAGCCCCAGAG	.	104.0	65.0	68.0	0.0	.	164	.	.	Atlas-SNP
EZH2	2146	hgsc.bcm.edu	hg19	7	148506446	148506446	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	EZH2	NM_004456	exon18	c.T2066G	p.I689S	AAACGAATTTTGT	.	137.0	45.0	86.0	0.0	.	823	.	.	Atlas-SNP
ABCB8	11194	hgsc.bcm.edu	hg19	7	150731818	150731818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ABCB8	NM_007188	exon5	c.A667G	p.I223V	CAAGACATCACCT	.	114.0	30.0	56.0	0.0	.	65	.	.	Atlas-SNP
TOX	9760	hgsc.bcm.edu	hg19	8	59750854	59750854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	TOX	NM_014729	exon5	c.A710G	p.K237R	GGCCGCTTCTCTC	.	74.0	23.0	46.0	0.0	.	83	.	.	Atlas-SNP
C8orf34	116328	hgsc.bcm.edu	hg19	8	69728153	69728153	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	C8orf34	NM_052958	exon13	c.T1582A	p.S528T	CCATGCTCTTCTT	.	133.0	77.0	85.0	0.0	.	170	.	.	Atlas-SNP
CRISPLD1	83690	hgsc.bcm.edu	hg19	8	75926334	75926334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	CRISPLD1	NM_031461	exon5	c.C623T	p.P208L	ACTCCCCAAAGTG	.	112.0	65.0	67.0	0.0	.	94	.	.	Atlas-SNP
SLC26A7	115111	hgsc.bcm.edu	hg19	8	92346676	92346676	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	SLC26A7	NM_134266	exon6	c.795+1G>T	.	GTTTTGGTAAGTA	.	76.0	48.0	56.0	0.0	.	207	.	.	Atlas-SNP
INTS8	55656	hgsc.bcm.edu	hg19	8	95861725	95861725	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	INTS8	NM_017864	exon11	c.A1296T	p.S432S	AGCTTCAGAGTCT	.	792.0	190.0	490.0	1.0	.	92	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	114186141	114186141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	CSMD3	NM_052900	exon4	c.G519T	p.L173F	ACTCTGCAATTCT	.	112.0	24.0	63.0	0.0	.	2325	.	.	Atlas-SNP
DEPTOR	64798	hgsc.bcm.edu	hg19	8	120940716	120940716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	DEPTOR	NM_022783	exon2	c.A199G	p.K67E	GTCGCAAAAGAAC	.	175.0	46.0	102.0	0.0	.	41	.	.	Atlas-SNP
SLA	6503	hgsc.bcm.edu	hg19	8	134052339	134052339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	SLA_ENST00000427060,right_upper_lobe,carcinoma,0,2	SLA	NM_006748	exon6	c.C641T	p.P214L	AGGCAGGGCGTGG	.	121.0	35.0	62.0	0.0	.	63	.	.	Atlas-SNP
ABCA1	19	hgsc.bcm.edu	hg19	9	107562206	107562206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ABCA1	NM_005502	exon36	c.A4837G	p.I1613V	GGAGAATGGCATT	.	108.0	39.0	67.0	0.0	.	244	.	.	Atlas-SNP
CEL	1056	hgsc.bcm.edu	hg19	9	135947089	135947089	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	CEL	NM_001807	exon11	c.G2209C	p.A737P	GAGGCTGCCCCTG	.	506.0	183.0	463.0	0.0	.	71	.	.	Atlas-SNP
ADAMTS13	11093	hgsc.bcm.edu	hg19	9	136310099	136310099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ADAMTS13	NM_139027	exon20	c.C2536T	p.P846S	GAGGGGCCTGGCT	.	49.0	21.0	41.0	0.0	.	113	.	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	hg19	10	50014124	50014124	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	WDFY4	NM_020945	exon27	c.G4722A	p.L1574L	AGCCCTGGACCCT	.	73.0	23.0	59.0	0.0	.	205	.	.	Atlas-SNP
DNAJB12	54788	hgsc.bcm.edu	hg19	10	74100799	74100799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	DNAJB12	NM_017626	exon4	c.C689T	p.A230V	ATGTCGGCCTCAA	.	81.0	31.0	68.0	0.0	.	22	.	.	Atlas-SNP
SCD	6319	hgsc.bcm.edu	hg19	10	102114194	102114194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	SCD	NM_005063	exon4	c.A452G	p.Y151C	ATGTCTATGAATG	.	42.0	15.0	45.0	0.0	.	25	.	.	Atlas-SNP
C10orf32	119032	hgsc.bcm.edu	hg19	10	104620107	104620107	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	C10orf32	NM_001136200	exon2	c.C160A	p.R54R	GCAGCTCGAAACA	.	79.0	37.0	74.0	0.0	.	3	.	.	Atlas-SNP
GSTO1	9446	hgsc.bcm.edu	hg19	10	106019401	106019401	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	GSTO1	NM_001191002	exon3	c.C211G	p.L71V	TTTGGTCTGGTGC	.	96.0	41.0	72.0	0.0	.	14	.	.	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	hg19	10	134705879	134705879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	TTC40	NM_001200049	exon25	c.G3262A	p.D1088N	GGAAGTCGGCCGT	.	78.0	38.0	74.0	0.0	.	100	.	.	Atlas-SNP
OR5R1	219479	hgsc.bcm.edu	hg19	11	56185036	56185036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	OR5R1	NM_001004744	exon1	c.A673G	p.I225V	TTAGGATAGCGGC	.	168.0	69.0	147.0	0.0	.	83	.	.	Atlas-SNP
ANO1	55107	hgsc.bcm.edu	hg19	11	70033927	70033927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ANO1	NM_018043	exon26	c.G2778T	p.E926D	CAAGGAGAAGGTG	.	78.0	32.0	96.0	0.0	.	156	.	.	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	hg19	11	76867076	76867076	+	Missense_Mutation	SNP	A	A	T	rs376016858	alternate_allele	TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	MYO7A	NM_001127179	exon5	c.A409T	p.I137F	TTTGCCATTGCTG	.	74.0	41.0	67.0	0.0	.	164	.	.	Atlas-SNP
PRCP	5547	hgsc.bcm.edu	hg19	11	82536148	82536148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	PRCP	NM_199418	exon10	c.C1354A	p.P452T	ACCAGGGGTCTAG	.	90.0	32.0	87.0	0.0	.	69	.	.	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117375715	117375715	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	DSCAML1	NM_020693	exon10	c.C2286T	p.I762I	GCCGTAGATGCCA	.	65.0	25.0	64.0	0.0	.	286	.	.	Atlas-SNP
SLC6A12	6539	hgsc.bcm.edu	hg19	12	301686	301686	+	Missense_Mutation	SNP	G	G	T	rs138858909	alternate_allele	TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	SLC6A12	NM_001122848	exon15	c.C1659A	p.F553L	GACGACGAAGAGT	.	123.0	57.0	103.0	0.0	.	60	.	G|1.000;A|0.000	Atlas-SNP
GPR162	27239	hgsc.bcm.edu	hg19	12	6933886	6933886	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	GPR162,NS,carcinoma,0,1	GPR162	NM_019858	exon2	c.C822T	p.S274S	GGTCAGCGCCATC	.	49.0	20.0	46.0	1.0	.	55	.	.	Atlas-SNP
NACA	4666	hgsc.bcm.edu	hg19	12	57107416	57107416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	NACA	NM_001113203	exon8	c.A2416G	p.I806V	TCCGGATAGTGAC	.	100.0	37.0	71.0	0.0	.	131	.	.	Atlas-SNP
SYT1	6857	hgsc.bcm.edu	hg19	12	79611325	79611325	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	SYT1	NM_001135805	exon5	c.C26G	p.A9G	ATGAGGCCCTGGC	.	27.0	8.0	43.0	0.0	.	70	.	.	Atlas-SNP
LRRIQ1	84125	hgsc.bcm.edu	hg19	12	85518023	85518023	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	LRRIQ1	NM_001079910	exon17	c.C3733T	p.Q1245X	ACTCTGCAAAATG	.	97.0	39.0	80.0	0.0	.	512	.	.	Atlas-SNP
ATP2B1	490	hgsc.bcm.edu	hg19	12	90035972	90035972	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ATP2B1	NM_001001323	exon2	c.C369G	p.G123G	AGAAAGGCCCAAT	.	92.0	33.0	83.0	0.0	.	191	.	.	Atlas-SNP
CORO1C	23603	hgsc.bcm.edu	hg19	12	109051082	109051082	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	CORO1C	NM_014325	exon6	c.A748A	p.M250M	GTACCGGATTCCA	.	42.0	12.0	67.0	0.0	.	53	.	.	Atlas-SNP
CORO1C	23603	hgsc.bcm.edu	hg19	12	109051083	109051083	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	CORO1C	NM_014325	exon6	c.C747A	p.F249L	TACCGGATTCCAG	.	42.0	12.0	67.0	0.0	.	53	.	.	Atlas-SNP
ZNF268	10795	hgsc.bcm.edu	hg19	12	133780200	133780200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ZNF268	NM_001165881	exon6	c.A1928G	p.N643S	GTTGTAATGAATG	.	13.0	6.0	8.0	0.0	.	71	.	.	Atlas-SNP
NHLRC3	387921	hgsc.bcm.edu	hg19	13	39613820	39613820	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	NHLRC3	NM_001012754	exon3	c.A357G	p.Q119Q	TGAACAATCCGTC	.	124.0	43.0	87.0	0.0	.	35	.	.	Atlas-SNP
RASA3	22821	hgsc.bcm.edu	hg19	13	114778624	114778624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	RASA3	NM_007368	exon15	c.C1506A	p.H502Q	CGTGTGGTGCGGC	.	61.0	20.0	55.0	0.0	.	83	.	.	Atlas-SNP
CRIP2	1397	hgsc.bcm.edu	hg19	14	105945139	105945139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	CRIP2	NM_001270837	exon4	c.C490T	p.P164S	ACCGGCCCCATCG	.	40.0	10.0	23.0	0.0	.	7	.	.	Atlas-SNP
NDN	4692	hgsc.bcm.edu	hg19	15	23931788	23931788	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	NDN	NM_002487	exon1	c.A577C	p.M193L	GGATCATGAGCAG	.	98.0	44.0	61.0	0.0	.	79	.	.	Atlas-SNP
USP3	9960	hgsc.bcm.edu	hg19	15	63881201	63881201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	USP3	NM_006537	exon14	c.A1388G	p.H463R	TGCACCATGGTTC	.	94.0	36.0	103.0	0.0	.	37	.	.	Atlas-SNP
SEMA7A	8482	hgsc.bcm.edu	hg19	15	74703257	74703257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	SEMA7A	NM_003612	exon14	c.C1709T	p.S570F	TGGCGGGATTCCA	.	60.0	27.0	59.0	0.0	.	58	.	.	Atlas-SNP
VPS33B	26276	hgsc.bcm.edu	hg19	15	91548981	91548981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	VPS33B	NM_018668	exon13	c.A973G	p.N325D	CGAAATTCTTCAT	.	98.0	37.0	69.0	0.0	.	42	.	.	Atlas-SNP
NDUFB10	4716	hgsc.bcm.edu	hg19	16	2011585	2011585	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	NDUFB10	NM_004548	exon3	c.T357A	p.C119X	GAACTGTATCAAG	.	101.0	44.0	98.0	0.0	.	17	.	.	Atlas-SNP
NDUFB10	4716	hgsc.bcm.edu	hg19	16	2011586	2011586	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	NDUFB10	NM_004548	exon3	c.A358T	p.I120F	AACTGTATCAAGG	.	101.0	44.0	98.0	0.0	.	17	.	.	Atlas-SNP
OTOA	146183	hgsc.bcm.edu	hg19	16	21698947	21698947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	OTOA,NS,carcinoma,0,1	OTOA	NM_144672	exon7	c.C613T	p.R205C	GACCTGCGCGAGG	.	98.0	39.0	78.0	0.0	.	144	.	.	Atlas-SNP
IRX3	79191	hgsc.bcm.edu	hg19	16	54318534	54318534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	IRX3	NM_024336	exon2	c.C1259G	p.P420R	AGGCGGGGGCCGG	.	18.0	13.0	21.0	0.0	.	25	.	.	Atlas-SNP
DPEP2	64174	hgsc.bcm.edu	hg19	16	68023228	68023228	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	DPEP2	NM_022355	exon9	c.C1068A	p.G356G	TCACTTGCCGGCC	.	62.0	31.0	62.0	0.0	.	43	.	.	Atlas-SNP
ZNF276	92822	hgsc.bcm.edu	hg19	16	89799791	89799791	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ZNF276	NM_001113525	exon7	c.C1251T	p.P417P	CAAGCCCGGATGG	.	155.0	71.0	142.0	0.0	.	70	.	.	Atlas-SNP
FAM222B	55731	hgsc.bcm.edu	hg19	17	27086796	27086796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	.	NM_018182	exon4	c.A181G	p.I61V	GGAAGATTTTTAT	.	126.0	39.0	115.0	0.0	.	.	.	.	Atlas-SNP
CLTC	1213	hgsc.bcm.edu	hg19	17	57743863	57743863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	CLTC	NM_004859	exon12	c.A1805G	p.N602S	TAGGCAATCAGAT	.	113.0	44.0	110.0	0.0	.	124	.	.	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	hg19	18	43490657	43490657	+	Missense_Mutation	SNP	T	T	C	rs200456950	bycluster	TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	EPG5	NM_020964	exon23	c.A4034G	p.H1345R	TTGATATGAGCAG	.	95.0	34.0	93.0	0.0	.	199	.	T|0.999;C|0.001	Atlas-SNP
SMIM7	79086	hgsc.bcm.edu	hg19	19	16764845	16764845	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	.	NM_024104	exon5	c.212+1G>A	.	GACTCACACAATC	.	56.0	22.0	57.0	0.0	.	.	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36216413	36216413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	MLL4	NM_014727	exon12	c.C3676T	p.H1226Y	CCATTCCACCCAT	.	27.0	11.0	26.0	0.0	.	229	.	.	Atlas-SNP
ZFP30	22835	hgsc.bcm.edu	hg19	19	38126047	38126047	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ZFP30	NM_014898	exon6	c.C1395T	p.P465P	GTCATAGGGCTTT	.	117.0	56.0	107.0	0.0	.	68	.	.	Atlas-SNP
ZNF83	55769	hgsc.bcm.edu	hg19	19	53116801	53116801	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	ZNF83,NS,carcinoma,0,2	ZNF83	NM_018300	exon3	c.C1017T	p.H339H	TCCAGTGTGGATT	.	136.0	8.0	110.0	2.0	.	73	.	.	Atlas-SNP
NLRP12	91662	hgsc.bcm.edu	hg19	19	54313913	54313913	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	NLRP12	NM_144687	exon3	c.T1000T	p.S334S	GCTCAGGGAGCAG	.	78.0	29.0	44.0	0.0	.	236	.	.	Atlas-SNP
SAMHD1	25939	hgsc.bcm.edu	hg19	20	35563535	35563535	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	SAMHD1	NM_015474	exon4	c.A406T	p.I136F	TATCAATGATTCG	.	178.0	77.0	147.0	0.0	.	62	.	.	Atlas-SNP
TIAM1	7074	hgsc.bcm.edu	hg19	21	32638770	32638770	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	TIAM1	NM_003253	exon5	c.A519T	p.A173A	GATGTCTGCAGAT	.	65.0	26.0	64.0	0.0	.	522	.	.	Atlas-SNP
ZMAT5	55954	hgsc.bcm.edu	hg19	22	30144469	30144469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ZMAT5	NM_001003692	exon2	c.A65G	p.K22R	TGCTTCTTGCGGT	.	104.0	41.0	85.0	0.0	.	12	.	.	Atlas-SNP
ARFGAP3	26286	hgsc.bcm.edu	hg19	22	43227599	43227599	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ARFGAP3	NM_014570	exon6	c.C521G	p.S174C	GTTAAAGAAGATG	.	85.0	40.0	91.0	0.0	.	48	.	.	Atlas-SNP
FRMPD4	9758	hgsc.bcm.edu	hg19	X	12735950	12735950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	FRMPD4	NM_014728	exon16	c.T3005C	p.M1002T	AAACTATGGAGAC	.	155.0	126.0	126.0	0.0	.	214	.	.	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	10971	10971	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	.	ENST00000361381	exon1	c.G212C	p.W71S	CTACCTGACTCCT	.	53.0	14.0	15.0	0.0	.	.	.	.	Atlas-SNP
AKR7A2	8574	hgsc.bcm.edu	hg19	1	19630807	19630808	+	Frame_Shift_Ins	INS	-	-	TCCG	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	AKR7A2	NM_003689	exon7	c.992_993insCGGA	p.E331fs	.	.	203.0	35.0	202.0	0.0	.	19	.	.	Atlas-INDEL
PAN2	9924	hgsc.bcm.edu	hg19	12	56713218	56713225	+	Frame_Shift_Del	DEL	GGCATCGA	GGCATCGA	-	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	GGCATCGA	GGCATCGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	PAN2	NM_001127460	exon23	c.3150_3157del	p.1050_1053del	.	.	75.0	20.0	68.0	0.0	.	107	.	.	Atlas-INDEL
ITGA9	3680	hgsc.bcm.edu	hg19	3	37583948	37583948	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ITGA9	NM_002207	exon15	c.1560delC	p.A520fs	.	.	212.0	86.0	179.0	0.0	.	98	.	.	Atlas-INDEL
ILKAP	80895	hgsc.bcm.edu	hg19	2	239092696	239092697	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ILKAP	NM_030768	exon7	c.591_592insA	p.H197fs	.	.	101.0	27.0	82.0	0.0	.	42	.	.	Atlas-INDEL
TRIM64	120146	hgsc.bcm.edu	hg19	11	89701771	89701771	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	.	NM_001136486	exon1	c.99delC	p.S33fs	.	.	174.0	29.0	168.0	0.0	.	.	.	.	Atlas-INDEL
DGKG	1608	hgsc.bcm.edu	hg19	3	185970881	185970883	+	Frame_Shift_Del	DEL	CCT	CCT	-	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	DGKG	NM_001346	exon18	c.1600_1600del	p.534_534del	.	.	48.0	14.0	53.0	0.0	.	98	.	.	Atlas-INDEL
SMPD1	6609	hgsc.bcm.edu	hg19	11	6411971	6411972	+	In_Frame_Ins	INS	-	-	GCTGGC	rs71056748	alternate_allele	TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	SMPD1_ENST00000342245,colon,carcinoma,0,2	SMPD1	NM_000543	exon1	c.143_144insGCTGGC	p.A48delinsALA	.	.	91.0	16.0	84.0	0.0	.	108	.	GCTGGCGCTGGC|1.000;|0.000	Atlas-INDEL
SETBP1	26040	hgsc.bcm.edu	hg19	18	42643462	42643463	+	In_Frame_Ins	INS	-	-	CCC	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	SETBP1	NM_015559	exon6	c.4590_4591insCCC	p.L1530delinsLP	.	.	156.0	11.0	116.0	0.0	.	577	.	.	Atlas-INDEL
MCM9	254394	hgsc.bcm.edu	hg19	6	119136492	119136493	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	MCM9	NM_017696	exon12	c.2927_2928insT	p.S976fs	.	.	102.0	47.0	79.0	0.0	.	73	.	.	Atlas-INDEL
CYP2C8	1558	hgsc.bcm.edu	hg19	10	96798766	96798766	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	CYP2C8	NM_000770	exon8	c.1180delG	p.V394fs	.	.	121.0	36.0	102.0	0.0	.	73	.	.	Atlas-INDEL
ASTE1	28990	hgsc.bcm.edu	hg19	3	130743203	130743232	+	In_Frame_Del	DEL	GACATAAGTACCACACTGGAAGAAGTCCTG	GACATAAGTACCACACTGGAAGAAGTCCTG	-	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	GACATAAGTACCACACTGGAAGAAGTCCTG	GACATAAGTACCACACTGGAAGAAGTCCTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	ASTE1	NM_014065	exon3	c.920_949del	p.307_317del	.	.	107.0	29.0	130.0	0.0	.	67	.	.	Atlas-INDEL
SENP6	26054	hgsc.bcm.edu	hg19	6	76419283	76419283	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	SENP6	NM_015571	exon20	c.2756delC	p.S919fs	.	.	103.0	41.0	114.0	0.0	.	189	.	.	Atlas-INDEL
AKR7A2	8574	hgsc.bcm.edu	hg19	1	19630804	19630805	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	AKR7A2	NM_003689	exon7	c.995_996insG	p.E332fs	.	.	205.0	37.0	206.0	0.0	.	19	.	.	Atlas-INDEL
IKBKAP	8518	hgsc.bcm.edu	hg19	9	111653509	111653510	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	IKBKAP	NM_003640	exon28	c.3134_3135insGC	p.L1045fs	.	.	125.0	55.0	119.0	0.0	.	122	.	.	Atlas-INDEL
HSD17B7	51478	hgsc.bcm.edu	hg19	1	162769552	162769570	+	Frame_Shift_Del	DEL	TCCTCTGTCACAGTGACAA	TCCTCTGTCACAGTGACAA	-	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	TCCTCTGTCACAGTGACAA	TCCTCTGTCACAGTGACAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	HSD17B7	NM_016371	exon5	c.466_484del	p.156_162del	.	.	492.0	85.0	324.0	0.0	.	25	.	.	Atlas-INDEL
IQCC	55721	hgsc.bcm.edu	hg19	1	32672166	32672166	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAEB-01A-11D-A40R-10	TCGA-DD-AAEB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ba6d6e9d-643f-400c-b52e-e08fb1d79709	a6b0ad70-8f87-4734-8dc2-6b9203d461d0	.	IQCC	NM_001160042	exon3	c.482delA	p.Q161fs	.	.	302.0	131.0	253.0	0.0	.	46	.	.	Atlas-INDEL