Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm TTC34 100287898 hgsc.bcm.edu hg19 1 2704267 2704267 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . TTC34 NM_001242672 exon2 c.G94A p.A32T CGCAGGCGACCCT . 146.0 70.0 144.0 0.0 . 2 . . Atlas-SNP PIK3CD 5293 hgsc.bcm.edu hg19 1 9778944 9778944 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . PIK3CD NM_005026 exon9 c.C1213T p.R405C AAGGCTCGCTCCA . 57.0 20.0 65.0 0.0 . 86 . . Atlas-SNP MROH7 374977 hgsc.bcm.edu hg19 1 55158176 55158176 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . . NM_001039464 exon16 c.G2791A p.G931S CAGGGTGGCTGGG . 72.0 30.0 45.0 0.0 . . . . Atlas-SNP MROH7 374977 hgsc.bcm.edu hg19 1 55158177 55158177 + Missense_Mutation SNP G G C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . . NM_001039464 exon16 c.G2792C p.G931A AGGGTGGCTGGGA . 73.0 30.0 46.0 0.0 . . . . Atlas-SNP PTBP2 58155 hgsc.bcm.edu hg19 1 97250726 97250726 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . PTBP2 NM_021190 exon8 c.C820T p.R274X TATACTCGACCTG . 83.0 30.0 90.0 0.0 . 62 . . Atlas-SNP SYT6 148281 hgsc.bcm.edu hg19 1 114680598 114680598 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . SYT6 NM_205848 exon3 c.C335T p.A112V TCTGCTGCTGGTG . 56.0 27.0 45.0 0.0 . 66 . . Atlas-SNP AMPD1 270 hgsc.bcm.edu hg19 1 115222318 115222318 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . AMPD1 NM_000036 exon7 c.C878T p.T293I CGGTGGGTATAGG . 114.0 52.0 114.0 0.0 . 223 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152283840 152283840 + Silent SNP T T A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . FLG NM_002016 exon3 c.A3522T p.G1174G CCTTCCTCCTCTC . 119.0 65.0 76.0 0.0 . 900 . . Atlas-SNP CCT3 7203 hgsc.bcm.edu hg19 1 156303356 156303356 + Missense_Mutation SNP T T A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . CCT3 NM_005998 exon5 c.A286T p.T96S CTGATGTGGTCCC . 60.0 38.0 36.0 0.0 . 61 . . Atlas-SNP PRCC 5546 hgsc.bcm.edu hg19 1 156737670 156737670 + Missense_Mutation SNP G G C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . PRCC NM_005973 exon1 c.G107C p.G36A CTTTAGGGGGCTT . 226.0 58.0 181.0 0.0 . 39 . . Atlas-SNP SLC9C2 284525 hgsc.bcm.edu hg19 1 173556888 173556888 + Missense_Mutation SNP A A T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . . NM_178527 exon5 c.T439A p.W147R AATCCCATGAATC . 128.0 61.0 102.0 0.0 . . . . Atlas-SNP KCNT2 343450 hgsc.bcm.edu hg19 1 196398776 196398776 + Silent SNP A A T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . KCNT2 NM_198503 exon9 c.T750A p.P250P TGTTTCAGGAGTG . 595.0 360.0 418.0 0.0 . 243 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237804207 237804207 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . RYR2 NM_001035 exon47 c.G7126T p.E2376X ACAGAGGAGGAGG . 80.0 54.0 54.0 0.0 . 1273 . . Atlas-SNP OR14C36 127066 hgsc.bcm.edu hg19 1 248512967 248512967 + Silent SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . OR14C36 NM_001001918 exon1 c.G891A p.V297V AAAGGTGGCCATC . 119.0 24.0 94.0 0.0 . 113 . . Atlas-SNP DDX1 1653 hgsc.bcm.edu hg19 2 15758310 15758310 + Silent SNP G G T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . DDX1 NM_004939 exon16 c.G1122T p.G374G GGATGGGCTTCTT . 186.0 73.0 212.0 0.0 . 70 . . Atlas-SNP OTOF 9381 hgsc.bcm.edu hg19 2 26702479 26702479 + Missense_Mutation SNP C C T rs142370721 TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . OTOF NM_194248 exon17 c.G1955A p.R652Q CGAGGCCGCTGGG . 90.0 33.0 102.0 0.0 . 524 . C|1.000;T|0.000 Atlas-SNP TTC7A 57217 hgsc.bcm.edu hg19 2 47278963 47278963 + Missense_Mutation SNP T T A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . TTC7A NM_020458 exon18 c.T2096A p.L699Q CGGTCCTGAAGCA . 106.0 39.0 95.0 0.0 . 80 . . Atlas-SNP KANSL3 55683 hgsc.bcm.edu hg19 2 97274685 97274685 + Silent SNP T T C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . . NM_001115016 exon13 c.A1500G p.R500R CAAGTCTCTGCGG . 103.0 7.0 109.0 0.0 . . . . Atlas-SNP KANSL3 55683 hgsc.bcm.edu hg19 2 97274687 97274687 + Missense_Mutation SNP T T C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . . NM_001115016 exon13 c.A1498G p.R500G AGTCTCTGCGGGC . 102.0 6.0 110.0 0.0 . . . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141459290 141459290 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . LRP1B NM_018557 exon40 c.G6427A p.G2143R GCTGACCTTTCTC . 54.0 21.0 63.0 0.0 . 1315 . . Atlas-SNP BAZ2B 29994 hgsc.bcm.edu hg19 2 160231234 160231234 + Nonsense_Mutation SNP C C A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . BAZ2B NM_013450 exon26 c.G4036T p.E1346X CCAGCTCTTCAAC . 39.0 11.0 36.0 0.0 . 196 . . Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 170101205 170101205 + Missense_Mutation SNP C C A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . LRP2 NM_004525 exon22 c.G3428T p.C1143F TTACTGCAGTTCT . 39.0 14.0 48.0 0.0 . 751 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179427083 179427083 + Silent SNP A A G novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . TTN NM_001267550 exon326 c.T83776C p.L27926L CAGTTAAGCCAGA . 62.0 29.0 67.0 0.0 . 18412 . . Atlas-SNP CDK15 65061 hgsc.bcm.edu hg19 2 202698631 202698631 + Missense_Mutation SNP A A G novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . CDK15 NM_001261435 exon7 c.A667G p.R223G CTTCACAGGGACC . 73.0 29.0 95.0 0.0 . 66 . . Atlas-SNP SUSD5 26032 hgsc.bcm.edu hg19 3 33195306 33195306 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . SUSD5 NM_015551 exon5 c.C818T p.P273L GCACCAGGCAAGC . 54.0 42.0 49.0 0.0 . 53 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266136 41266136 + Missense_Mutation SNP T T C rs121913407 bycluster TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 CTNNB1,NS,carcinoma,0,1 CTNNB1 NM_001098209 exon3 c.T133C p.S45P GCTCCTTCTCTGA . 108.0 90.0 107.0 1.0 . 4904 . . Atlas-SNP GNL3 26354 hgsc.bcm.edu hg19 3 52720072 52720072 + Splice_Site SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . GNL3 . . . . GCGGAGGCAGGTT . 50.0 37.0 69.0 0.0 . 37 . . Atlas-SNP TMEM110-MUSTN1 100526772 hgsc.bcm.edu hg19 3 52877737 52877737 + Silent SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . . NM_001198974 exon6 c.C618T p.N206N ACTGACGTTGACA . 47.0 39.0 51.0 0.0 . . . . Atlas-SNP CBLB 868 hgsc.bcm.edu hg19 3 105404274 105404274 + Silent SNP T T C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . CBLB NM_170662 exon14 c.A2091G p.K697K TCTTGTTTTCTCT . 65.0 30.0 99.0 0.0 . 118 . . Atlas-SNP MORC1 27136 hgsc.bcm.edu hg19 3 108819341 108819341 + Silent SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . MORC1 NM_014429 exon5 c.C237T p.D79D AATGATGTCTGAA . 102.0 44.0 90.0 0.0 . 211 . . Atlas-SNP TRH 7200 hgsc.bcm.edu hg19 3 129696007 129696007 + Missense_Mutation SNP G G A rs149654673 bycluster TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . TRH NM_007117 exon3 c.G677A p.R226Q AAAAGCGGCAGCA . 36.0 12.0 39.0 0.0 . 30 . G|1.000;A|0.000 Atlas-SNP TP63 8626 hgsc.bcm.edu hg19 3 189584586 189584586 + Silent SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . TP63 NM_001114979 exon6 c.G882A p.Q294Q ACCCCAGGTAAAA . 172.0 63.0 185.0 0.0 . 187 . . Atlas-SNP TRAM1L1 133022 hgsc.bcm.edu hg19 4 118005493 118005493 + Nonsense_Mutation SNP C C A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . TRAM1L1 NM_152402 exon1 c.G1057T p.E353X AAGTTTCCACTCC . 84.0 31.0 97.0 0.0 . 55 . . Atlas-SNP PCDH18 54510 hgsc.bcm.edu hg19 4 138451631 138451631 + Missense_Mutation SNP C C A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . PCDH18 NM_019035 exon1 c.G1612T p.V538L GACTCACTTCTTC . 76.0 30.0 77.0 0.0 . 229 . . Atlas-SNP KIAA1430 57587 hgsc.bcm.edu hg19 4 186111951 186111951 + Missense_Mutation SNP C C A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . KIAA1430 NM_020827 exon2 c.G400T p.D134Y CTCCATCTGTGTA . 90.0 43.0 81.0 0.0 . 55 . . Atlas-SNP DHX29 54505 hgsc.bcm.edu hg19 5 54581616 54581616 + Silent SNP T T C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . DHX29 NM_019030 exon9 c.A1140G p.K380K AAATTGTTTGGGA . 136.0 48.0 144.0 0.0 . 116 . . Atlas-SNP IQGAP2 10788 hgsc.bcm.edu hg19 5 75886316 75886316 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . IQGAP2 NM_006633 exon8 c.G724A p.A242T CCAAATGCGGTTT . 130.0 51.0 131.0 0.0 . 186 . . Atlas-SNP UNC5CL 222643 hgsc.bcm.edu hg19 6 40998166 40998166 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . UNC5CL NM_173561 exon8 c.G1295A p.R432K GCCAGTCTGCGCC . 194.0 22.0 87.0 0.0 . 52 . . Atlas-SNP GCLC 2729 hgsc.bcm.edu hg19 6 53364926 53364926 + Missense_Mutation SNP G G T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . GCLC NM_001498 exon15 c.C1619A p.S540Y AGGTAAGAGTTCA . 214.0 49.0 93.0 0.0 . 58 . . Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56481993 56481993 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . DST NM_001723 exon24 c.G6272A p.G2091E CTAAGCCCTTGGA . 119.0 23.0 50.0 0.0 . 1427 . . Atlas-SNP OPRM1 4988 hgsc.bcm.edu hg19 6 154360440 154360440 + Missense_Mutation SNP G G T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . OPRM1 NM_001145279 exon2 c.G145T p.A49S GGGGCAGGTGATG . 52.0 40.0 80.0 0.0 . 241 . . Atlas-SNP ASZ1 136991 hgsc.bcm.edu hg19 7 117003700 117003700 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . ASZ1 NM_130768 exon13 c.G1378A p.G460R CGAATCCGCATAT . 93.0 16.0 83.0 0.0 . 56 . . Atlas-SNP STRIP2 57464 hgsc.bcm.edu hg19 7 129102863 129102863 + Silent SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . . NM_020704 exon14 c.C1533T p.Y511Y GCTGTACAGCCTT . 64.0 14.0 65.0 0.0 . . . . Atlas-SNP MKLN1 4289 hgsc.bcm.edu hg19 7 131122635 131122635 + Missense_Mutation SNP T T C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . MKLN1 NM_013255 exon10 c.T1052C p.V351A CCTCTGTGAGGAA . 149.0 31.0 112.0 0.0 . 67 . . Atlas-SNP RUNX1T1 862 hgsc.bcm.edu hg19 8 92982954 92982954 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 RUNX1T1_ENST00000436581,NS,carcinoma,0,5 RUNX1T1 NM_001198679 exon11 c.G1648A p.A550T CCTCGGCGACCGT . 124.0 26.0 67.0 0.0 . 516 . . Atlas-SNP MAL2 114569 hgsc.bcm.edu hg19 8 120220776 120220776 + Splice_Site SNP G G C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . . NM_052886 exon1 c.64+1G>C . CGCCCCGGGGTCA . 81.0 13.0 34.0 0.0 . . . . Atlas-SNP HSF1 3297 hgsc.bcm.edu hg19 8 145533250 145533250 + Silent SNP T T A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . HSF1 NM_005526 exon3 c.T336A p.L112L GCTCCTTGAGAAC . 353.0 250.0 172.0 0.0 . 29 . . Atlas-SNP CDKN2A 1029 hgsc.bcm.edu hg19 9 21971190 21971190 + Missense_Mutation SNP G G T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 CDKN2A_ENST00000361570,NS,carcinoma,+1,1 CDKN2A NM_058195 exon2 c.C211A p.R71S TCGGGCGCTGCCC . 39.0 17.0 42.0 0.0 . 4810 . . Atlas-SNP CCDC180 0 hgsc.bcm.edu hg19 9 100105806 100105806 + Missense_Mutation SNP T T C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . . NM_020893 exon19 c.T2591C p.V864A AACAAGTGACAAT . 59.0 20.0 57.0 0.0 . . . . Atlas-SNP ACTL7B 10880 hgsc.bcm.edu hg19 9 111617761 111617761 + Silent SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . ACTL7B NM_006686 exon1 c.C450T p.S150S AGGGTCGGAGACC . 53.0 16.0 64.0 0.0 . 57 . . Atlas-SNP GPSM1 26086 hgsc.bcm.edu hg19 9 139234263 139234263 + Silent SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . GPSM1 NM_015597 exon8 c.C1074T p.I358I GCAGATCTCCCAG . 55.0 27.0 63.0 0.0 . 50 . . Atlas-SNP ABCA2 20 hgsc.bcm.edu hg19 9 139902954 139902954 + Missense_Mutation SNP G G T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . ABCA2 NM_212533 exon48 c.C7279A p.P2427T CCGTGGGGGCAGA . 61.0 23.0 60.0 0.0 . 113 . . Atlas-SNP FUT7 2529 hgsc.bcm.edu hg19 9 139925353 139925353 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . FUT7 NM_004479 exon2 c.G838A p.A280T CTCGGGCTGAGCC . 65.0 26.0 43.0 0.0 . 24 . . Atlas-SNP RASGEF1A 221002 hgsc.bcm.edu hg19 10 43691966 43691966 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . RASGEF1A NM_145313 exon12 c.G1379A p.G460D TCGGGACCCTCAC . 59.0 21.0 50.0 0.0 . 66 . . Atlas-SNP JMJD1C 221037 hgsc.bcm.edu hg19 10 64952883 64952883 + Missense_Mutation SNP T T C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . JMJD1C NM_032776 exon16 c.A5891G p.N1964S ATTTTATTACTGT . 17.0 6.0 20.0 0.0 . 347 . . Atlas-SNP TBATA 219793 hgsc.bcm.edu hg19 10 72536989 72536989 + Missense_Mutation SNP A A G novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . . NM_152710 exon7 c.T610C p.S204P GGTGAGATCTGCG . 38.0 12.0 40.0 0.0 . . . . Atlas-SNP PTEN 5728 hgsc.bcm.edu hg19 10 89685287 89685287 + Missense_Mutation SNP A A T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 PTEN,NS,carcinoma,0,10 PTEN NM_000314 exon3 c.A182T p.H61L CAAAGCATAAAAA . 1334.0 544.0 1343.0 1.0 . 3652 . . Atlas-SNP CHUK 1147 hgsc.bcm.edu hg19 10 101967049 101967049 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . CHUK NM_001278 exon11 c.G1169A p.S390N GTTTTACTTTTAT . 59.0 13.0 75.0 0.0 . 71 . . Atlas-SNP SORCS3 22986 hgsc.bcm.edu hg19 10 107022244 107022244 + Missense_Mutation SNP T T C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . SORCS3 NM_014978 exon26 c.T3599C p.V1200A CGCGGGTCATAGG . 59.0 28.0 62.0 0.0 . 282 . . Atlas-SNP COPB1 1315 hgsc.bcm.edu hg19 11 14512195 14512195 + Silent SNP A A G novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . COPB1 NM_001144062 exon5 c.T522C p.P174P CAGTTCAGGAGCA . 153.0 53.0 170.0 0.0 . 81 . . Atlas-SNP OR8H2 390151 hgsc.bcm.edu hg19 11 55872580 55872580 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . OR8H2 NM_001005200 exon1 c.C62T p.S21F CACTTTCTGAAGA . 76.0 32.0 88.0 0.0 . 117 . . Atlas-SNP OR5T3 390154 hgsc.bcm.edu hg19 11 56019703 56019703 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . OR5T3 NM_001004747 exon1 c.C28T p.L10F TATAACCTTTATA . 55.0 19.0 64.0 0.0 . 98 . . Atlas-SNP AHNAK 79026 hgsc.bcm.edu hg19 11 62293842 62293842 + Missense_Mutation SNP T T C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . AHNAK NM_001620 exon5 c.A8047G p.I2683V CTTCAATGTTAAC . 101.0 42.0 85.0 0.0 . 532 . . Atlas-SNP PIH1D2 120379 hgsc.bcm.edu hg19 11 111941928 111941928 + Missense_Mutation SNP C C A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . PIH1D2 NM_001082619 exon4 c.G381T p.Q127H AATTAACTGATTT . 57.0 29.0 52.0 0.0 . 24 . . Atlas-SNP KCNJ1 3758 hgsc.bcm.edu hg19 11 128709552 128709552 + Missense_Mutation SNP T T C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . KCNJ1 NM_000220 exon2 c.A644G p.N215S CTGAGATTAGCCA . 72.0 32.0 71.0 0.0 . 68 . . Atlas-SNP VWF 7450 hgsc.bcm.edu hg19 12 6128399 6128399 + Silent SNP C C A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . VWF NM_000552 exon28 c.G4185T p.R1395R AAAGTTCCGGGAC . 42.0 15.0 40.0 0.0 . 338 . . Atlas-SNP CLSTN3 9746 hgsc.bcm.edu hg19 12 7288407 7288407 + Silent SNP T T A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . CLSTN3 NM_014718 exon5 c.T600A p.I200I GAACATTGAGAAC . 53.0 26.0 64.0 0.0 . 84 . . Atlas-SNP FAM186A 121006 hgsc.bcm.edu hg19 12 50746094 50746094 + Silent SNP G G C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 FAM186A_ENST00000327337,NS,carcinoma,0,8 FAM186A NM_001145475 exon4 c.C4521G p.L1507L AGGGATGAGAAGG . 117.0 5.0 107.0 0.0 . 181 . . Atlas-SNP KRT86 3892 hgsc.bcm.edu hg19 12 52699514 52699514 + Missense_Mutation SNP A A T rs373358594 alternate_allele TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . KRT86 NM_002284 exon6 c.A968T p.N323I AGATCAACGAGCT . 105.0 40.0 111.0 0.0 . 33 . . Atlas-SNP MFSD5 84975 hgsc.bcm.edu hg19 12 53646678 53646678 + Missense_Mutation SNP A A G novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . MFSD5 NM_001170790 exon2 c.A380G p.E127G GGCTGGAACTGTC . 65.0 31.0 65.0 0.0 . 40 . . Atlas-SNP IKZF4 64375 hgsc.bcm.edu hg19 12 56429110 56429110 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . IKZF4 NM_022465 exon8 c.G1753A p.G585S AAGGTGGGCTAGC . 49.0 16.0 37.0 0.0 . 71 . . Atlas-SNP SLC26A10 65012 hgsc.bcm.edu hg19 12 58015473 58015473 + Missense_Mutation SNP A A G novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . SLC26A10 NM_133489 exon4 c.A556G p.T186A CCTCAGACGCTGG . 46.0 20.0 67.0 0.0 . 89 . . Atlas-SNP GIT2 9815 hgsc.bcm.edu hg19 12 110370863 110370863 + Missense_Mutation SNP G G C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . GIT2 NM_057169 exon20 c.C2200G p.Q734E TGACCTGCTGCGT . 53.0 23.0 66.0 0.0 . 81 . . Atlas-SNP PIWIL1 9271 hgsc.bcm.edu hg19 12 130832690 130832690 + Silent SNP T T C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . PIWIL1 NM_004764 exon7 c.T696C p.Y232Y AAATTATTATAAC . 65.0 28.0 103.0 0.0 . 157 . . Atlas-SNP RNF17 56163 hgsc.bcm.edu hg19 13 25367348 25367348 + Silent SNP T T C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . RNF17 NM_001184993 exon10 c.T1104C p.D368D AAATGATGTACAT . 101.0 42.0 115.0 0.0 . 259 . . Atlas-SNP HMGB1 3146 hgsc.bcm.edu hg19 13 31035522 31035522 + Missense_Mutation SNP T T A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . HMGB1 NM_002128 exon5 c.A620T p.D207V TCTTCATCTTCAT . 66.0 29.0 58.0 0.0 . 21 . . Atlas-SNP ITM2B 9445 hgsc.bcm.edu hg19 13 48807572 48807572 + Missense_Mutation SNP G G T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . ITM2B NM_021999 exon1 c.G76T p.A26S GAGGAGGCGCTCA . 150.0 63.0 113.0 0.0 . 24 . . Atlas-SNP ING1 3621 hgsc.bcm.edu hg19 13 111368119 111368119 + Missense_Mutation SNP G G T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . ING1 NM_005537 exon1 c.G329T p.R110L TCTCCCGCTGGCC . 25.0 9.0 26.0 0.0 . 106 . . Atlas-SNP PCK2 5106 hgsc.bcm.edu hg19 14 24572747 24572747 + Silent SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . PCK2 NM_004563 exon10 c.C1497T p.A499A ATTTGCCATGCGG . 90.0 43.0 102.0 0.0 . 66 . . Atlas-SNP ATP10A 57194 hgsc.bcm.edu hg19 15 25928550 25928550 + Missense_Mutation SNP G G T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . ATP10A NM_024490 exon17 c.C3375A p.F1125L ATTAAAGAAGATT . 175.0 79.0 178.0 0.0 . 270 . . Atlas-SNP NOP10 55505 hgsc.bcm.edu hg19 15 34635263 34635263 + Missense_Mutation SNP C C A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . NOP10 NM_018648 exon1 c.G12T p.Q4H GTAATACTGGAGA . 81.0 36.0 87.0 0.0 . 8 . . Atlas-SNP SPG11 80208 hgsc.bcm.edu hg19 15 44859685 44859685 + Missense_Mutation SNP T T C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . SPG11 NM_025137 exon36 c.A6691G p.I2231V CGCCAATCTCCCG . 51.0 25.0 57.0 0.0 . 207 . . Atlas-SNP SEMA4B 10509 hgsc.bcm.edu hg19 15 90764627 90764627 + Silent SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . SEMA4B NM_020210 exon7 c.C624T p.S208S AGTCAGCAGCTTC . 69.0 26.0 62.0 0.0 . 51 . . Atlas-SNP MAPK8IP3 23162 hgsc.bcm.edu hg19 16 1816360 1816360 + Silent SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . MAPK8IP3 NM_015133 exon22 c.C2766T p.H922H AGAGCACGTCTTC . 112.0 11.0 104.0 0.0 . 164 . . Atlas-SNP FAM92B 339145 hgsc.bcm.edu hg19 16 85132897 85132897 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . FAM92B NM_198491 exon8 c.C809T p.A270V TGATTGGCATGAG . 61.0 28.0 87.0 0.0 . 29 . . Atlas-SNP GLP2R 9340 hgsc.bcm.edu hg19 17 9729508 9729508 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . GLP2R NM_004246 exon1 c.G128A p.C43Y GGAAGTGCTCTCT . 35.0 9.0 44.0 0.0 . 90 . . Atlas-SNP TPGS1 91978 hgsc.bcm.edu hg19 19 519025 519025 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . . NM_033513 exon2 c.G475A p.E159K CCCGAGGAGGTGG . 46.0 23.0 38.0 0.0 . . . . Atlas-SNP ADAMTS10 81794 hgsc.bcm.edu hg19 19 8661267 8661267 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . ADAMTS10 NM_030957 exon10 c.C1114T p.R372C TCTCGCGCTCACA . 43.0 6.0 44.0 0.0 . 132 . . Atlas-SNP ZNF878 729747 hgsc.bcm.edu hg19 19 12154963 12154963 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . ZNF878 NM_001080404 exon4 c.C1253T p.T418I TCTCCTGTGTGAG . 47.0 22.0 57.0 0.0 . 172 . . Atlas-SNP POP4 10775 hgsc.bcm.edu hg19 19 30099579 30099579 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . POP4 NM_006627 exon2 c.C23T p.A8V ACCATGCATTGTC . 42.0 18.0 59.0 0.0 . 20 . . Atlas-SNP CEBPA 1050 hgsc.bcm.edu hg19 19 33792753 33792753 + Missense_Mutation SNP A A G novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . CEBPA NM_004364 exon1 c.T568C p.S190P GGTGCGAGGGCGG . 129.0 12.0 71.0 0.0 . 986 . . Atlas-SNP FGF21 26291 hgsc.bcm.edu hg19 19 49259647 49259647 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . FGF21 NM_019113 exon1 c.G154A p.D52N TACACAGATGATG . 46.0 18.0 44.0 0.0 . 21 . . Atlas-SNP RUVBL2 10856 hgsc.bcm.edu hg19 19 49506571 49506571 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . RUVBL2 NM_006666 exon3 c.G103A p.D35N CTGGACGATGCCT . 83.0 39.0 93.0 0.0 . 31 . . Atlas-SNP SIGLEC5 8778 hgsc.bcm.edu hg19 19 52130954 52130954 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . SIGLEC5 NM_003830 exon6 c.G1043A p.G348D TGCAGACCCTCAG . 44.0 19.0 30.0 0.0 . 67 . . Atlas-SNP SIGLEC1 6614 hgsc.bcm.edu hg19 20 3674951 3674951 + Missense_Mutation SNP A A T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . SIGLEC1 NM_023068 exon12 c.T3173A p.M1058K TCCAGCATAGCCC . 92.0 44.0 102.0 0.0 . 210 . . Atlas-SNP CST11 140880 hgsc.bcm.edu hg19 20 23432513 23432513 + Missense_Mutation SNP C C A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . CST11 NM_130794 exon2 c.G273T p.W91C GGTGGTCCACTGC . 62.0 32.0 61.0 0.0 . 27 . . Atlas-SNP SDC4 6385 hgsc.bcm.edu hg19 20 43964503 43964503 + Missense_Mutation SNP C C T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . SDC4 NM_002999 exon2 c.G118A p.G40R GGGCTCCGGAGAA . 37.0 14.0 44.0 0.0 . 16 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 32235165 32235165 + Silent SNP A A T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . DMD NM_004006 exon44 c.T6306A p.S2102S CTCAACAGATCTG . 202.0 176.0 174.0 0.0 . 2127 . . Atlas-SNP MAGEC3 139081 hgsc.bcm.edu hg19 X 140926121 140926121 + Missense_Mutation SNP G G C novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . MAGEC3 NM_138702 exon1 c.G20C p.W7S GCCACTGGGTGTT . 86.0 76.0 89.0 0.0 . 228 . . Atlas-SNP NLGN4Y 22829 hgsc.bcm.edu hg19 Y 16942170 16942170 + Missense_Mutation SNP G G T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . NLGN4Y NM_014893 exon5 c.G1372T p.D458Y ACCGCCGACCTGC . 149.0 119.0 157.0 0.0 . 44 . . Atlas-SNP COX3 5742 hgsc.bcm.edu hg19 MT 9591 9591 + Missense_Mutation SNP G G A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . . ENST00000362079 exon1 c.G385A p.V129I CTAGAAGTCCCAC . 44.0 40.0 23.0 0.0 . . . . Atlas-SNP FAM45A 404636 hgsc.bcm.edu hg19 10 120879889 120879890 + Frame_Shift_Ins INS - - A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . FAM45A NM_207009 exon5 c.518_519insA p.L173fs . . 240.0 100.0 289.0 0.0 . 30 . . Atlas-INDEL RPS6KA3 6197 hgsc.bcm.edu hg19 X 20222202 20222203 + Frame_Shift_Ins INS - - T novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . RPS6KA3 NM_004586 exon4 c.263_264insA p.I88fs . . 112.0 32.0 107.0 0.0 . 110 . . Atlas-INDEL C9orf131 138724 hgsc.bcm.edu hg19 9 35044496 35044497 + Frame_Shift_Del DEL CA CA - novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 CA CA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . C9orf131 NM_203299 exon2 c.1869_1870del p.623_624del . . 59.0 25.0 98.0 0.0 . 71 . . Atlas-INDEL PCLO 27445 hgsc.bcm.edu hg19 7 82585150 82585157 + Frame_Shift_Del DEL AGTCTGTC AGTCTGTC - novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 AGTCTGTC AGTCTGTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . PCLO NM_014510 exon5 c.5113_5120del p.1705_1707del . . 130.0 23.0 97.0 0.0 . 1506 . . Atlas-INDEL CENPH 64946 hgsc.bcm.edu hg19 5 68492921 68492921 + Frame_Shift_Del DEL T T - novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . CENPH NM_022909 exon5 c.355delA p.I119fs . . 247.0 110.0 260.0 0.0 . 28 . . Atlas-INDEL FZD2 2535 hgsc.bcm.edu hg19 17 42635670 42635675 + In_Frame_Del DEL TCAAGG TCAAGG - novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 TCAAGG TCAAGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . FZD2 NM_001466 exon1 c.613_618del p.205_206del . . 35.0 11.0 49.0 0.0 . 81 . . Atlas-INDEL TTC19 54902 hgsc.bcm.edu hg19 17 15930009 15930023 + In_Frame_Del DEL GCACAGAGGTAGGTA GCACAGAGGTAGGTA - novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 GCACAGAGGTAGGTA GCACAGAGGTAGGTA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . TTC19 NM_017775 exon9 c.986_994del p.329_332del . . 79.0 15.0 94.0 0.0 . 10 . . Atlas-INDEL FAM117B 150864 hgsc.bcm.edu hg19 2 203630340 203630341 + Frame_Shift_Ins INS - - A novel TCGA-DD-AAW3-01A-11D-A40P-10 TCGA-DD-AAW3-10A-01D-A40P-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 07d529e0-2ba2-49d7-b348-2ef3d52cc0ce e3ae1920-aeb7-4aa2-b8c2-f83450414f08 . FAM117B NM_173511 exon8 c.1623_1624insA p.G541fs . . 62.0 29.0 83.0 0.0 . 73 . . Atlas-INDEL