Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
AGMAT	79814	hgsc.bcm.edu	hg19	1	15909713	15909713	+	Silent	SNP	T	T	G	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	AGMAT	NM_024758	exon2	c.A450C	p.A150A	GCCAGCTGCTACA	.	64.0	10.0	53.0	0.0	.	25	.	.	Atlas-SNP
LRRIQ3	127255	hgsc.bcm.edu	hg19	1	74507289	74507289	+	Silent	SNP	A	A	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	LRRIQ3	NM_001105659	exon7	c.T1326A	p.V442V	GGCTACAACTCTT	.	42.0	4.0	44.0	0.0	.	146	.	.	Atlas-SNP
CNTN2	6900	hgsc.bcm.edu	hg19	1	205041630	205041630	+	Silent	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CNTN2	NM_005076	exon21	c.C2751A	p.G917G	TCCTGGCAACATC	.	80.0	8.0	72.0	0.0	.	116	.	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	hg19	5	7396525	7396525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ADCY2	NM_020546	exon1	c.G116A	p.C39Y	ACTACTGCATGAG	.	63.0	4.0	94.0	0.0	.	337	.	.	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	hg19	5	33891885	33891885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ADAMTS12	NM_030955	exon1	c.A77G	p.Y26C	CTCCCATAGCAAA	.	361.0	22.0	353.0	0.0	.	464	.	.	Atlas-SNP
OR11A1	26531	hgsc.bcm.edu	hg19	6	29395394	29395394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	OR11A1	NM_013937	exon1	c.G25A	p.E9K	TAGTTTCGTTTCC	.	89.0	6.0	68.0	0.0	.	30	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152536122	152536122	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SYNE1	NM_182961	exon122	c.T22265A	p.L7422X	TCATTCAAGGGTA	.	75.0	4.0	81.0	0.0	.	3227	.	.	Atlas-SNP
RHBDD2	57414	hgsc.bcm.edu	hg19	7	75511359	75511359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	RHBDD2	NM_001040456	exon2	c.G391T	p.D131Y	GTGGAGGATGCCA	.	258.0	21.0	225.0	0.0	.	49	.	.	Atlas-SNP
ZNF862	643641	hgsc.bcm.edu	hg19	7	149558968	149558968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ZNF862	NM_001099220	exon7	c.T2719A	p.L907M	ATCTGCTTGGACA	.	101.0	5.0	103.0	0.0	.	97	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2949136	2949136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CSMD1	NM_033225	exon48	c.C7187T	p.T2396I	TGTTCAGTATGAT	.	32.0	4.0	29.0	0.0	.	1469	.	.	Atlas-SNP
ODF1	4956	hgsc.bcm.edu	hg19	8	103572783	103572783	+	Silent	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ODF1	NM_024410	exon2	c.C424A	p.R142R	AAAGTTCGAGTGA	.	245.0	13.0	192.0	0.0	.	55	.	.	Atlas-SNP
TMOD1	7111	hgsc.bcm.edu	hg19	9	100325046	100325046	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	TMOD1	NM_001166116	exon5	c.C430T	p.Q144X	AGTAACCAGCAGT	.	113.0	6.0	106.0	0.0	.	29	.	.	Atlas-SNP
OR51A4	401666	hgsc.bcm.edu	hg19	11	4967860	4967860	+	Silent	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	OR51A4,NS,carcinoma,-2,1	OR51A4	NM_001005329	exon1	c.G471T	p.L157L	AAGAACCAGGAGC	.	237.0	13.0	206.0	0.0	.	73	.	.	Atlas-SNP
OR8B4	283162	hgsc.bcm.edu	hg19	11	124294075	124294075	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	OR8B4	NM_001005196	exon1	c.G693A	p.E231E	TCTGCCCTCTGCA	.	98.0	4.0	92.0	0.0	.	60	.	.	Atlas-SNP
HEATR3	55027	hgsc.bcm.edu	hg19	16	50106573	50106573	+	Silent	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	HEATR3	NM_182922	exon5	c.G570T	p.V190V	GATTGTGTTAAAG	.	82.0	5.0	130.0	0.0	.	59	.	.	Atlas-SNP
ASIC2	40	hgsc.bcm.edu	hg19	17	32483120	32483120	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_001094	exon1	c.G432A	p.K144K	GTAGTGCTTGAAG	.	180.0	14.0	135.0	0.0	.	.	.	.	Atlas-SNP
CA4	762	hgsc.bcm.edu	hg19	17	58235740	58235740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CA4	NM_000717	exon7	c.C677T	p.T226I	TCACCACACCGAC	.	130.0	8.0	103.0	0.0	.	20	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76451796	76451796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	DNAH17	NM_173628	exon63	c.G10100A	p.G3367D	AAGTAGCCCACGT	.	187.0	8.0	198.0	0.0	.	347	.	.	Atlas-SNP
L3MBTL4	91133	hgsc.bcm.edu	hg19	18	6243330	6243330	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	L3MBTL4	NM_173464	exon7	c.G423A	p.W141X	TTCACACCATCCT	.	118.0	5.0	109.0	0.0	.	87	.	.	Atlas-SNP
SOGA2	23255	hgsc.bcm.edu	hg19	18	8824928	8824928	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_015210	exon15	c.G3420A	p.R1140R	GGGGCGGGCAGGG	.	63.0	4.0	76.0	0.0	.	.	.	.	Atlas-SNP
MYO5B	4645	hgsc.bcm.edu	hg19	18	47390748	47390748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	MYO5B	NM_001080467	exon28	c.G3606T	p.R1202S	CTCTTGCCTCTGG	.	47.0	4.0	47.0	0.0	.	178	.	.	Atlas-SNP
IRGC	56269	hgsc.bcm.edu	hg19	19	44223141	44223141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	IRGC	NM_019612	exon2	c.G431A	p.R144H	CCCGCCGCTGCGG	.	18.0	9.0	42.0	0.0	.	67	.	.	Atlas-SNP
ZNF83	55769	hgsc.bcm.edu	hg19	19	53116801	53116801	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	ZNF83,NS,carcinoma,0,2	ZNF83	NM_018300	exon3	c.C1017T	p.H339H	TCCAGTGTGGATT	.	99.0	9.0	92.0	2.0	.	73	.	.	Atlas-SNP
SRC	6714	hgsc.bcm.edu	hg19	20	36031248	36031248	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SRC	NM_005417	exon13	c.C1367G	p.T456S	TGCTGACTGAGCT	.	138.0	12.0	124.0	0.0	.	52	.	.	Atlas-SNP
KIAA0930	23313	hgsc.bcm.edu	hg19	22	45595761	45595761	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	KIAA0930	NM_015264	exon8	c.C1023T	p.D341D	TCCACCGTCGTCC	.	74.0	4.0	69.0	0.0	.	43	.	.	Atlas-SNP
CXorf58	254158	hgsc.bcm.edu	hg19	X	23934445	23934445	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CXorf58	NM_152761	exon5	c.G423A	p.K141K	AAGTAAGGTGACG	.	152.0	9.0	143.0	0.0	.	53	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	31525469	31525469	+	Silent	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	DMD	NM_004006	exon56	c.C8319A	p.V2773V	TAACAGGACTGCA	.	166.0	8.0	133.0	0.0	.	2127	.	.	Atlas-SNP