Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm NDUFS5 4725 hgsc.bcm.edu hg19 1 39494585 39494585 + Silent SNP C C T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 NDUFS5,colon,carcinoma,0,2 NDUFS5 NM_001184979 exon2 c.C189T p.F63F TGATTTCGTAGAG . 86.0 31.0 89.0 0.0 . 13 . . Atlas-SNP JAK1 3716 hgsc.bcm.edu hg19 1 65306964 65306964 + Missense_Mutation SNP T T G novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . JAK1 NM_002227 exon19 c.A2613C p.E871D GCGCTTTTCAAAA . 129.0 45.0 145.0 0.0 . 209 . . Atlas-SNP ST7L 54879 hgsc.bcm.edu hg19 1 113098573 113098573 + Missense_Mutation SNP G G A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . ST7L NM_138729 exon12 c.C1313T p.A438V GCAATTGCTTCAC . 63.0 20.0 55.0 0.0 . 31 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181701775 181701775 + Missense_Mutation SNP C C A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . CACNA1E NM_001205293 exon20 c.C2553A p.S851R CATCAGCCGTGGG . 98.0 18.0 61.0 0.0 . 778 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 185976272 185976272 + Silent SNP G G A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . HMCN1 NM_031935 exon30 c.G4488A p.L1496L ATTTTTGGGCGAT . 172.0 139.0 119.0 0.0 . 797 . . Atlas-SNP KCNH1 3756 hgsc.bcm.edu hg19 1 210856666 210856666 + Missense_Mutation SNP G G T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 KCNH1,NS,carcinoma,0,1 KCNH1 NM_172362 exon11 c.C2927A p.P976Q GACTGTGGCCTCG . 130.0 15.0 85.0 0.0 . 199 . . Atlas-SNP PARP1 142 hgsc.bcm.edu hg19 1 226590006 226590006 + Silent SNP C C T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . PARP1 NM_001618 exon2 c.G195A p.R65R AGGGTGCCGGATG . 40.0 31.0 26.0 0.0 . 100 . . Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21233705 21233705 + Missense_Mutation SNP C C T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 APOB,NS,malignant_melanoma,0,1 APOB NM_000384 exon26 c.G6035A p.R2012Q AGAGTTCGTCCAG . 194.0 57.0 217.0 0.0 . 761 . . Atlas-SNP ST6GAL2 84620 hgsc.bcm.edu hg19 2 107460245 107460245 + Silent SNP G G T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 ST6GAL2,NS,carcinoma,0,1 ST6GAL2 NM_032528 exon2 c.C189A p.G63G TGCGGCGCCCATG . 40.0 16.0 32.0 0.0 . 159 . . Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196891574 196891574 + Missense_Mutation SNP G G T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . DNAH7 NM_018897 exon7 c.C577A p.P193T GTTGTGGAACTAA . 89.0 26.0 105.0 0.0 . 512 . . Atlas-SNP MAP2 4133 hgsc.bcm.edu hg19 2 210561763 210561763 + Missense_Mutation SNP C C T rs369892280 alternate_allele TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . MAP2 NM_002374 exon9 c.C4510T p.R1504W GTTAAGCGGAAAA . 81.0 29.0 99.0 0.0 . 372 . . Atlas-SNP INHA 3623 hgsc.bcm.edu hg19 2 220439974 220439974 + Missense_Mutation SNP G G T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . INHA NM_002191 exon2 c.G827T p.W276L TGGGCTGGGAACG . 102.0 37.0 89.0 0.0 . 30 . . Atlas-SNP CUL3 8452 hgsc.bcm.edu hg19 2 225376243 225376243 + Silent SNP T T C novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . CUL3 NM_001257198 exon6 c.A729G p.V243V AGCTTCTACTTTC . 154.0 47.0 202.0 0.0 . 96 . . Atlas-SNP KAT2B 8850 hgsc.bcm.edu hg19 3 20181810 20181810 + Missense_Mutation SNP G G T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . KAT2B NM_003884 exon13 c.G1958T p.R653L ATCCACGGATCCC . 95.0 4.0 71.0 0.0 . 73 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266101 41266101 + Missense_Mutation SNP C C G rs121913400 bycluster TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 CTNNB1,gallbladder,other,0,359 CTNNB1 NM_001098209 exon3 c.C98G p.S33C TGGACTCTGGAAT . 149.0 16.0 215.0 1.0 . 4904 . . Atlas-SNP SLC9C1 285335 hgsc.bcm.edu hg19 3 111981884 111981884 + Missense_Mutation SNP G G A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . . NM_183061 exon10 c.C1084T p.R362C TCCAGCGCCAACT . 198.0 69.0 206.0 0.0 . . . . Atlas-SNP ARHGAP31 57514 hgsc.bcm.edu hg19 3 119133178 119133178 + Missense_Mutation SNP A A C novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . ARHGAP31 NM_020754 exon12 c.A2402C p.K801T TTTCAAAGGGCGG . 35.0 12.0 46.0 0.0 . 175 . . Atlas-SNP PTPN13 5783 hgsc.bcm.edu hg19 4 87683886 87683886 + Missense_Mutation SNP C C A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . PTPN13 NM_080683 exon24 c.C3560A p.S1187Y TGCCTTCTACTCC . 48.0 24.0 82.0 0.0 . 203 . . Atlas-SNP SEC24B 10427 hgsc.bcm.edu hg19 4 110384263 110384263 + Nonsense_Mutation SNP C C T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . SEC24B NM_006323 exon2 c.C340T p.Q114X GGAGCACAGCAGT . 37.0 21.0 88.0 0.0 . 186 . . Atlas-SNP IRX1 79192 hgsc.bcm.edu hg19 5 3599650 3599650 + Silent SNP C C A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . IRX1 NM_024337 exon2 c.C588A p.R196R AGCGCGCAGCAAG . 68.0 31.0 60.0 0.0 . 106 . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90484380 90484380 + Missense_Mutation SNP G G A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 MDN1,caecum,carcinoma,0,1 MDN1 NM_014611 exon13 c.C1894T p.R632W GAAGCCGCACTCG . 148.0 10.0 163.0 0.0 . 478 . . Atlas-SNP WISP3 8838 hgsc.bcm.edu hg19 6 112375575 112375575 + Silent SNP C C A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . WISP3 NM_198239 exon1 c.C69A p.L23L GCTCCTCTTCTCC . 75.0 13.0 62.0 0.0 . 33 . . Atlas-SNP PIK3CG 5294 hgsc.bcm.edu hg19 7 106545719 106545719 + Nonsense_Mutation SNP A A T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . PIK3CG NM_002649 exon11 c.A3196T p.K1066X GCTAAAAAGTATT . 123.0 37.0 160.0 0.0 . 279 . . Atlas-SNP INSIG1 3638 hgsc.bcm.edu hg19 7 155094008 155094008 + Silent SNP C C T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . INSIG1 NM_005542 exon4 c.C585T p.A195A AGCAGCCCTATCT . 221.0 67.0 239.0 0.0 . 20 . . Atlas-SNP SPAG1 6674 hgsc.bcm.edu hg19 8 101237520 101237520 + Missense_Mutation SNP C C T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . SPAG1 NM_003114 exon14 c.C1808T p.S603L TGATCTCAAAACA . 65.0 12.0 66.0 0.0 . 80 . . Atlas-SNP ADAMTSL1 92949 hgsc.bcm.edu hg19 9 18777646 18777646 + Missense_Mutation SNP G G A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . ADAMTSL1 NM_001040272 exon19 c.G3419A p.G1140D TGTCTGGCTTCAG . 28.0 14.0 39.0 0.0 . 306 . . Atlas-SNP IFNA13 3447 hgsc.bcm.edu hg19 9 21367937 21367937 + Missense_Mutation SNP A A C novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . IFNA13 NM_006900 exon1 c.T73G p.C25G GATCACAGCCCAG . 86.0 11.0 120.0 0.0 . 19 . . Atlas-SNP CDKN2A 1029 hgsc.bcm.edu hg19 9 21971111 21971111 + Missense_Mutation SNP G G C rs121913385 alternate_allele TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 CDKN2A_ENST00000498124,NS,carcinoma,0,37 CDKN2A NM_058195 exon2 c.C290G p.A97G CGTCGTGCACGGG . 35.0 17.0 71.0 0.0 . 4810 . . Atlas-SNP C9orf135 138255 hgsc.bcm.edu hg19 9 72459518 72459518 + Nonsense_Mutation SNP C C T rs372154813 TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . C9orf135 NM_001010940 exon2 c.C238T p.R80X TATCGGCGACTGG . 43.0 13.0 76.0 0.0 . 25 . . Atlas-SNP FFAR4 338557 hgsc.bcm.edu hg19 10 95326941 95326941 + Missense_Mutation SNP G G T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . . NM_001195755 exon1 c.G464T p.R155L GGGCGCGGGCAGT . 48.0 17.0 58.0 0.0 . . . . Atlas-SNP ZNF195 7748 hgsc.bcm.edu hg19 11 3380429 3380429 + Missense_Mutation SNP C C A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 ZNF195_ENST00000399602,NS,carcinoma,0,2 ZNF195 NM_001130520 exon6 c.G1809T p.E603D GGGTTTCTCTCCA . 83.0 35.0 100.0 1.0 . 77 . . Atlas-SNP CFL1 1072 hgsc.bcm.edu hg19 11 65623665 65623665 + Missense_Mutation SNP T T A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . CFL1 NM_005507 exon2 c.A52T p.M18L CCTTCATGTCGTT . 62.0 23.0 79.0 0.0 . 15 . . Atlas-SNP C11orf54 28970 hgsc.bcm.edu hg19 11 93494680 93494680 + Splice_Site SNP G G A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . C11orf54 NM_014039 exon8 c.625-1G>A . ATCTTAGGGGTTT . 140.0 40.0 129.0 0.0 . 23 . . Atlas-SNP CASP4 837 hgsc.bcm.edu hg19 11 104819259 104819259 + Splice_Site SNP C C A rs144482787 bycluster;alternate_allele TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . CASP4 NM_033306 exon7 c.757+1G>T . TACATACGTGGCG . 46.0 15.0 70.0 0.0 . 57 . C|1.000;T|0.000 Atlas-SNP ARCN1 372 hgsc.bcm.edu hg19 11 118452209 118452209 + Silent SNP G G A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . ARCN1 NM_001655 exon2 c.G252A p.R84R CCTAAGGCTCTTC . 56.0 25.0 70.0 0.0 . 33 . . Atlas-SNP KDM5A 5927 hgsc.bcm.edu hg19 12 443421 443421 + Missense_Mutation SNP G G C novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . KDM5A NM_001042603 exon11 c.C1476G p.I492M GTAGTTGATGGAA . 86.0 39.0 148.0 0.0 . 307 . . Atlas-SNP LARP4 113251 hgsc.bcm.edu hg19 12 50869602 50869602 + Silent SNP A A G novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . LARP4 NM_052879 exon16 c.A2130G p.R710R GACTCGACGTAAT . 91.0 20.0 141.0 0.0 . 58 . . Atlas-SNP COL4A2 1284 hgsc.bcm.edu hg19 13 111141810 111141810 + Missense_Mutation SNP G G C novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . COL4A2 NM_001846 exon35 c.G3226C p.G1076R GCCCCAGGGAGAG . 66.0 15.0 107.0 0.0 . 178 . . Atlas-SNP SLC7A7 9056 hgsc.bcm.edu hg19 14 23242904 23242904 + Missense_Mutation SNP T T G novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . SLC7A7 NM_001126105 exon11 c.A1451C p.Q484P AGGACCTGGAGGT . 52.0 17.0 78.0 0.0 . 36 . . Atlas-SNP ACIN1 22985 hgsc.bcm.edu hg19 14 23549881 23549881 + Silent SNP C C T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . ACIN1 NM_001164814 exon6 c.G837A p.E279E TTCTTCCTCCTCC . 114.0 12.0 89.0 0.0 . 147 . . Atlas-SNP RALGAPA1 253959 hgsc.bcm.edu hg19 14 36008806 36008806 + Missense_Mutation SNP C C T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . RALGAPA1 NM_194301 exon40 c.G6194A p.S2065N CTTTTGCTAGTTC . 64.0 18.0 65.0 0.0 . 289 . . Atlas-SNP FLRT2 23768 hgsc.bcm.edu hg19 14 86089754 86089754 + Silent SNP G G A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . FLRT2 NM_013231 exon2 c.G1896A p.G632G AAATGGGGGCATT . 55.0 26.0 81.0 0.0 . 168 . . Atlas-SNP C16orf70 80262 hgsc.bcm.edu hg19 16 67159932 67159932 + Missense_Mutation SNP A A G novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . C16orf70 NM_025187 exon3 c.A218G p.N73S CTTTCAATCAGAG . 30.0 9.0 36.0 0.0 . 38 . . Atlas-SNP PSMB10 5699 hgsc.bcm.edu hg19 16 67968561 67968561 + Missense_Mutation SNP G G A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . PSMB10 NM_002801 exon8 c.C724T p.H242Y CAAAGTGGTAGCG . 53.0 22.0 62.0 0.0 . 19 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577534 7577534 + Missense_Mutation SNP C C A rs28934571 bycluster TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 TP53_ENST00000455263,right_lower_lobe,carcinoma,-2,1 TP53 NM_000546 exon7 c.G747T p.R249S GATGGGCCTCCGG . 48.0 27.0 94.0 0.0 . 33396 . . Atlas-SNP RNF43 54894 hgsc.bcm.edu hg19 17 56435197 56435197 + Missense_Mutation SNP A A T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . RNF43 NM_017763 exon9 c.T1940A p.L647H GCAGAGAGGCTGG . 82.0 7.0 89.0 0.0 . 157 . . Atlas-SNP C17orf47 284083 hgsc.bcm.edu hg19 17 56620718 56620718 + Missense_Mutation SNP A A G novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . C17orf47 NM_001038704 exon1 c.T830C p.V277A TTAAGGACAGAGA . 130.0 50.0 107.0 0.0 . 59 . . Atlas-SNP SLC26A11 284129 hgsc.bcm.edu hg19 17 78196581 78196581 + Missense_Mutation SNP C C T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . SLC26A11 NM_173626 exon4 c.C362T p.A121V AGCCCGCCTACGC . 93.0 47.0 86.0 0.0 . 60 . . Atlas-SNP AMH 268 hgsc.bcm.edu hg19 19 2249687 2249687 + Missense_Mutation SNP G G T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . AMH NM_000479 exon1 c.G356T p.G119V GGCTGGGGGCCTG . 41.0 16.0 32.0 0.0 . 12 . . Atlas-SNP IFI30 10437 hgsc.bcm.edu hg19 19 18284657 18284657 + Silent SNP C C T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 IFI30,NS,carcinoma,0,1 IFI30 NM_006332 exon1 c.C6T p.T2T GATGACCCTGTCG . 15.0 4.0 24.0 0.0 . 12 . . Atlas-SNP LILRA2 11027 hgsc.bcm.edu hg19 19 55086255 55086255 + Missense_Mutation SNP G G T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . LILRA2 NM_001130917 exon4 c.G410T p.G137V TAGGAGGGAACGT . 66.0 18.0 53.0 0.0 . 99 . . Atlas-SNP ZNF329 79673 hgsc.bcm.edu hg19 19 58639664 58639664 + Missense_Mutation SNP C C T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . ZNF329 NM_024620 exon4 c.G1207A p.E403K CACATTCTTTACA . 112.0 17.0 111.0 0.0 . 70 . . Atlas-SNP SGK2 10110 hgsc.bcm.edu hg19 20 42195738 42195738 + Missense_Mutation SNP G G C novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 SGK2,NS,carcinoma,0,1 SGK2 NM_016276 exon2 c.G247C p.G83R AACCTGGGGCCTT . 68.0 20.0 56.0 0.0 . 50 . . Atlas-SNP AURKA 6790 hgsc.bcm.edu hg19 20 54961384 54961384 + Missense_Mutation SNP C C T novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . AURKA NM_198437 exon3 c.G248A p.S83N GGTACACTGGTTG . 200.0 77.0 227.0 0.0 . 42 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 31496267 31496267 + Missense_Mutation SNP C C A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . DMD NM_004006 exon59 c.G8893T p.D2965Y GGAGATCGCCCAC . 104.0 30.0 111.0 0.0 . 2127 . . Atlas-SNP PRRG1 5638 hgsc.bcm.edu hg19 X 37285115 37285115 + Silent SNP C C A novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . PRRG1 NM_001173490 exon3 c.C33A p.A11A AAAAGCCAATTCC . 354.0 130.0 566.0 1.0 . 42 . . Atlas-SNP AMER1 139285 hgsc.bcm.edu hg19 X 63412194 63412194 + Silent SNP A A G novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . . NM_152424 exon2 c.T973C p.L325L CTGTCAATGAATC . 87.0 9.0 97.0 0.0 . . . . Atlas-SNP MYF5 4617 hgsc.bcm.edu hg19 12 81112792 81112792 + Frame_Shift_Del DEL G G - novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . MYF5 NM_005593 exon3 c.729delA p.P243fs . . 75.0 22.0 76.0 0.0 . 78 . . Atlas-Indel,Pindel TMEM44 93109 hgsc.bcm.edu hg19 3 194336377 194336377 + Frame_Shift_Del DEL C C - novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . TMEM44 NM_001166305 exon8 c.975delA p.G325fs . . 118.0 45.0 166.0 0.0 . 42 . . Atlas-Indel,Pindel COL9A1 1297 hgsc.bcm.edu hg19 6 71003965 71003965 + Frame_Shift_Del DEL T T - novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . COL9A1 NM_001851 exon5 c.602delT p.I201fs . . 113.0 45.0 120.0 0.0 . 228 . . Atlas-Indel,Pindel SEC22A 26984 hgsc.bcm.edu hg19 3 122978413 122978413 + Frame_Shift_Del DEL G G - novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . SEC22A NM_012430 exon6 c.699delT p.L233fs . . 335.0 113.0 370.0 0.0 . 29 . . Atlas-Indel,Pindel SLC30A1 7779 hgsc.bcm.edu hg19 1 211749034 211749047 + Frame_Shift_Del DEL AAAACGTCTTTAAT AAAACGTCTTTAAT - novel TCGA-ED-A7XP-01A-11D-A34Z-10 TCGA-ED-A7XP-10A-01D-A34Z-10 AAAACGTCTTTAAT AAAACGTCTTTAAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1041e66f-f2c8-4391-a397-b067e8d51acd dcbe4804-a5e8-4a45-bccb-c61bca357514 . SLC30A1 NM_021194 exon2 c.1208_1221del p.403_407del . . 80.0 65.0 75.0 0.0 . 27 . . Atlas-Indel,Pindel