Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MORN1	79906	hgsc.bcm.edu	hg19	1	2288951	2288951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MORN1	NM_024848	exon10	c.A956G	p.D319G	GGCACGTCGGCTT	.	174.0	38.0	253.0	0.0	.	38	.	.	Atlas-SNP
FAM213B	127281	hgsc.bcm.edu	hg19	1	2519820	2519820	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001195736	exon4	c.T456C	p.C152C	CTGGTGTCTTCGC	.	79.0	4.0	115.0	0.0	.	.	.	.	Atlas-SNP
CCDC27	148870	hgsc.bcm.edu	hg19	1	3683876	3683876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CCDC27	NM_152492	exon10	c.A1610G	p.Q537R	AGCTGCAGGAGCA	.	148.0	7.0	204.0	0.0	.	79	.	.	Atlas-SNP
C1orf174	339448	hgsc.bcm.edu	hg19	1	3807353	3807353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C1orf174	NM_207356	exon3	c.C398A	p.A133E	GTCTTTGCTAAGC	.	99.0	4.0	138.0	0.0	.	20	.	.	Atlas-SNP
TMEM201	199953	hgsc.bcm.edu	hg19	1	9669927	9669927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM201	NM_001130924	exon8	c.C1423T	p.P475S	AGCCGCCCACCAT	.	80.0	4.0	133.0	0.0	.	63	.	.	Atlas-SNP
KIF1B	23095	hgsc.bcm.edu	hg19	1	10425293	10425293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIF1B	NM_015074	exon40	c.T4364C	p.L1455P	TGGAGCTCCTACA	.	118.0	5.0	185.0	0.0	.	242	.	.	Atlas-SNP
C1orf127	148345	hgsc.bcm.edu	hg19	1	11009710	11009710	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C1orf127	NM_001170754	exon11	c.C1261T	p.L421L	GGTGCAGGAGGTC	.	132.0	26.0	133.0	0.0	.	134	.	.	Atlas-SNP
MTHFR	4524	hgsc.bcm.edu	hg19	1	11854524	11854524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTHFR	NM_005957	exon8	c.C1238T	p.P413L	TCCTTGGGGGACT	.	125.0	5.0	159.0	0.0	.	65	.	.	Atlas-SNP
TNFRSF8	943	hgsc.bcm.edu	hg19	1	12202458	12202458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TNFRSF8	NM_001243	exon15	c.A1658G	p.E553G	AGCTGGAGGCGGA	.	158.0	7.0	268.0	0.0	.	70	.	.	Atlas-SNP
HNRNPCL1	343069	hgsc.bcm.edu	hg19	1	12907747	12907747	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HNRNPCL1	NM_001013631	exon2	c.T396C	p.P132P	AGGAGGAGGAGGT	.	173.0	8.0	311.0	0.0	.	68	.	.	Atlas-SNP
PLEKHM2	23207	hgsc.bcm.edu	hg19	1	16051847	16051847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLEKHM2	NM_015164	exon8	c.T748C	p.S250P	CCCCGCTCCACAG	.	113.0	5.0	164.0	0.0	.	94	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16257506	16257506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPEN	NM_015001	exon11	c.A4771G	p.T1591A	GAGCTCACACGGA	.	68.0	4.0	88.0	0.0	.	374	.	.	Atlas-SNP
KLHDC7A	127707	hgsc.bcm.edu	hg19	1	18808601	18808601	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHDC7A	NM_152375	exon1	c.C1126T	p.Q376X	GAGCTGCAGCTGC	.	42.0	4.0	74.0	0.0	.	60	.	.	Atlas-SNP
OTUD3	23252	hgsc.bcm.edu	hg19	1	20224100	20224100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OTUD3	NM_015207	exon4	c.A551G	p.D184G	ACTACGACAGTGT	.	75.0	4.0	89.0	0.0	.	25	.	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	hg19	1	22182319	22182319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HSPG2	NM_005529	exon45	c.A5662G	p.S1888G	TGGCGCTGCAGCG	.	90.0	5.0	151.0	0.0	.	311	.	.	Atlas-SNP
KDM1A	23028	hgsc.bcm.edu	hg19	1	23403758	23403758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KDM1A	NM_001009999	exon16	c.T1772A	p.V591E	TGACAGTAAGGAA	.	79.0	5.0	126.0	0.0	.	49	.	.	Atlas-SNP
ZNF436	80818	hgsc.bcm.edu	hg19	1	23689249	23689249	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF436	NM_001077195	exon4	c.T626C	p.L209P	TGAATCAGGTGAG	.	168.0	8.0	241.0	0.0	.	49	.	.	Atlas-SNP
MAN1C1	57134	hgsc.bcm.edu	hg19	1	26080014	26080014	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAN1C1	NM_020379	exon5	c.C874T	p.L292L	AAGCTCCTGCCGG	.	102.0	5.0	158.0	0.0	.	48	.	.	Atlas-SNP
EXTL1	2134	hgsc.bcm.edu	hg19	1	26356101	26356101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EXTL1	NM_004455	exon3	c.T884C	p.I295T	GCTGCATCCCAGT	.	95.0	4.0	120.0	0.0	.	61	.	.	Atlas-SNP
ARID1A	8289	hgsc.bcm.edu	hg19	1	27094372	27094372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARID1A	NM_006015	exon11	c.A3080G	p.Y1027C	ACCGTTATCTGGC	.	223.0	62.0	348.0	0.0	.	842	.	.	Atlas-SNP
NR0B2	8431	hgsc.bcm.edu	hg19	1	27240242	27240242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NR0B2	NM_021969	exon1	c.G190T	p.A64S	TCTTGGCCAGAAC	.	41.0	4.0	66.0	0.0	.	14	.	.	Atlas-SNP
STX12	23673	hgsc.bcm.edu	hg19	1	28136791	28136791	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STX12	NM_177424	exon5	c.C461A	p.S154X	TGGTCTCATTTGA	.	87.0	4.0	132.0	0.0	.	26	.	.	Atlas-SNP
COL16A1	1307	hgsc.bcm.edu	hg19	1	32149324	32149324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	COL16A1,NS,carcinoma,0,1	COL16A1	NM_001856	exon34	c.G2363A	p.G788E	TGGACTCCCCTTC	.	74.0	4.0	111.0	0.0	.	137	.	.	Atlas-SNP
EIF3I	8668	hgsc.bcm.edu	hg19	1	32696740	32696740	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EIF3I	NM_003757	exon11	c.T921C	p.G307G	AGATGGTTACGTC	.	84.0	4.0	117.0	0.0	.	38	.	.	Atlas-SNP
ZBTB8B	728116	hgsc.bcm.edu	hg19	1	32950817	32950817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZBTB8B	NM_001145720	exon4	c.A1286G	p.D429G	TTACAGACACACC	.	78.0	5.0	104.0	0.0	.	28	.	.	Atlas-SNP
PHC2	1912	hgsc.bcm.edu	hg19	1	33794700	33794700	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PHC2	NM_198040	exon13	c.A2193G	p.T731T	GCTGTGTGTTAGC	.	78.0	4.0	88.0	0.0	.	78	.	.	Atlas-SNP
ZSCAN20	7579	hgsc.bcm.edu	hg19	1	33955141	33955141	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZSCAN20	NM_145238	exon5	c.T705C	p.H235H	CAAACATGCTGAG	.	58.0	4.0	82.0	0.0	.	107	.	.	Atlas-SNP
ZMYM4	9202	hgsc.bcm.edu	hg19	1	35846860	35846860	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZMYM4	NM_005095	exon8	c.A1182G	p.K394K	TTTTAGAGACATT	.	82.0	4.0	89.0	0.0	.	143	.	.	Atlas-SNP
AGO1	26523	hgsc.bcm.edu	hg19	1	36367622	36367622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	EIF2C1,colon,carcinoma,0,1	.	NM_012199	exon10	c.A1214G	p.E405G	TGACGGAGGTGAC	.	121.0	5.0	204.0	0.0	.	.	.	.	Atlas-SNP
STK40	83931	hgsc.bcm.edu	hg19	1	36814368	36814368	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STK40	NM_032017	exon8	c.G672T	p.V224V	CTCGCTCACCAGA	.	114.0	5.0	154.0	0.0	.	53	.	.	Atlas-SNP
ZC3H12A	80149	hgsc.bcm.edu	hg19	1	37945926	37945926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZC3H12A	NM_025079	exon3	c.T479C	p.I160T	GGGGCATCCTGCT	.	119.0	5.0	202.0	0.0	.	58	.	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39757653	39757653	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MACF1	NM_012090	exon17	c.C1872T	p.H624H	GCAGCACATCCAT	.	84.0	4.0	109.0	0.0	.	909	.	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39818713	39818713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MACF1	NM_012090	exon40	c.A5048G	p.K1683R	ACAAGAAGAAGAT	.	80.0	4.0	128.0	0.0	.	909	.	.	Atlas-SNP
PPIE	10450	hgsc.bcm.edu	hg19	1	40218656	40218656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PPIE	NM_006112	exon9	c.T769C	p.W257R	ACAGACTGGCTGG	.	99.0	5.0	153.0	0.0	.	33	.	.	Atlas-SNP
RLF	6018	hgsc.bcm.edu	hg19	1	40705226	40705226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RLF	NM_012421	exon8	c.T4852C	p.C1618R	AGAAGCTGTGAAT	.	146.0	6.0	233.0	0.0	.	152	.	.	Atlas-SNP
HIVEP3	59269	hgsc.bcm.edu	hg19	1	42046720	42046720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HIVEP3	NM_024503	exon4	c.T3749C	p.L1250P	CCAGGGAGCTGAA	.	70.0	4.0	102.0	0.0	.	235	.	.	Atlas-SNP
FOXJ3	22887	hgsc.bcm.edu	hg19	1	42730811	42730811	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FOXJ3	NM_001198852	exon4	c.C419G	p.P140R	GATCGAGGCACTT	.	80.0	4.0	85.0	0.0	.	59	.	.	Atlas-SNP
MPL	4352	hgsc.bcm.edu	hg19	1	43812146	43812146	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MPL	NM_005373	exon7	c.A1011G	p.E337E	AGAGGAAGAGAAA	.	103.0	5.0	156.0	0.0	.	651	.	.	Atlas-SNP
ERI3	79033	hgsc.bcm.edu	hg19	1	44818544	44818544	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ERI3	NM_024066	exon2	c.T189C	p.L63L	GATGCCAAGACCG	.	92.0	5.0	169.0	0.0	.	39	.	.	Atlas-SNP
PTCH2	8643	hgsc.bcm.edu	hg19	1	45294290	45294290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PTCH2	NM_001166292	exon12	c.A1478G	p.E493G	AGACACTCGCCCA	.	101.0	5.0	135.0	0.0	.	96	.	.	Atlas-SNP
HECTD3	79654	hgsc.bcm.edu	hg19	1	45473144	45473144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HECTD3	NM_024602	exon10	c.A1444G	p.M482V	GTTCCATGGCAAG	.	119.0	5.0	163.0	0.0	.	158	.	.	Atlas-SNP
MUTYH	4595	hgsc.bcm.edu	hg19	1	45800076	45800076	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MUTYH	NM_012222	exon2	c.T144C	p.P48P	GGCAGAAGGCTTG	.	80.0	4.0	109.0	0.0	.	38	.	.	Atlas-SNP
CC2D1B	200014	hgsc.bcm.edu	hg19	1	52825005	52825005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CC2D1B	NM_032449	exon10	c.A1043G	p.Q348R	GGAGCCTGAGAAG	.	92.0	4.0	157.0	0.0	.	73	.	.	Atlas-SNP
TCEANC2	127428	hgsc.bcm.edu	hg19	1	54520126	54520126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TCEANC2	NM_153035	exon2	c.A31G	p.I11V	CCTAGAATCCAGA	.	112.0	5.0	138.0	0.0	.	17	.	.	Atlas-SNP
C8A	731	hgsc.bcm.edu	hg19	1	57378098	57378098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C8A	NM_000562	exon10	c.T1403C	p.L468P	AGGTGCTGCGGCA	.	79.0	4.0	104.0	0.0	.	103	.	.	Atlas-SNP
C1orf87	127795	hgsc.bcm.edu	hg19	1	60491090	60491090	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C1orf87	NM_152377	exon8	c.T1110C	p.G370G	TTGGTAACCCAAA	.	92.0	5.0	156.0	0.0	.	55	.	.	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62593719	62593719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INADL	NM_176877	exon40	c.G5119T	p.A1707S	TTTATTGCCATGA	.	95.0	4.0	194.0	0.0	.	179	.	.	Atlas-SNP
JAK1	3716	hgsc.bcm.edu	hg19	1	65310560	65310560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	JAK1	NM_002227	exon16	c.C2128A	p.L710M	GGACCAGGTCTTT	.	122.0	5.0	197.0	0.0	.	209	.	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	hg19	1	70460299	70460299	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRC7	NM_020794	exon9	c.A873G	p.L291L	AATGCTACCCAAT	.	70.0	4.0	109.0	0.0	.	400	.	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	hg19	1	70505146	70505146	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRC7	NM_020794	exon19	c.A3525G	p.E1175E	AGATGAACACCCT	.	93.0	4.0	98.0	0.0	.	400	.	.	Atlas-SNP
LHX8	431707	hgsc.bcm.edu	hg19	1	75602350	75602350	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LHX8	NM_001001933	exon3	c.C81T	p.R27R	GACTCGCAAAGGC	.	93.0	20.0	163.0	0.0	.	73	.	.	Atlas-SNP
FUBP1	8880	hgsc.bcm.edu	hg19	1	78432758	78432758	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FUBP1	NM_003902	exon5	c.A318G	p.K106K	TGGAACTTTGTAT	.	77.0	4.0	140.0	0.0	.	112	.	.	Atlas-SNP
MCOLN2	255231	hgsc.bcm.edu	hg19	1	85431253	85431253	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MCOLN2	NM_153259	exon2	c.G216C	p.K72N	GACTATCTTCAAA	.	127.0	23.0	186.0	0.0	.	60	.	.	Atlas-SNP
BARHL2	343472	hgsc.bcm.edu	hg19	1	91182635	91182635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BARHL2	NM_020063	exon1	c.A118G	p.T40A	CCGCGGTCCTGGC	.	98.0	5.0	129.0	0.0	.	62	.	.	Atlas-SNP
RPAP2	79871	hgsc.bcm.edu	hg19	1	92789692	92789692	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RPAP2	NM_024813	exon8	c.A1215G	p.E405E	TAAAGAAGAACTT	.	98.0	4.0	151.0	0.0	.	48	.	.	Atlas-SNP
RPAP2	79871	hgsc.bcm.edu	hg19	1	92789911	92789911	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RPAP2	NM_024813	exon8	c.C1434T	p.T478T	AACCACCAAATCA	.	89.0	4.0	136.0	0.0	.	48	.	.	Atlas-SNP
FAM69A	388650	hgsc.bcm.edu	hg19	1	93309606	93309606	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM69A	NM_001006605	exon5	c.G621A	p.V207V	AAGTATCACCATG	.	97.0	4.0	165.0	0.0	.	30	.	.	Atlas-SNP
DNTTIP2	30836	hgsc.bcm.edu	hg19	1	94342288	94342288	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DNTTIP2	NM_014597	exon2	c.A1203G	p.E401E	GGACTCTTCTTCA	.	547.0	135.0	851.0	0.0	.	59	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94520726	94520726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCA4	NM_000350	exon16	c.T2528C	p.M843T	AGGAGCATCATCT	.	102.0	5.0	138.0	0.0	.	275	.	.	Atlas-SNP
EXTL2	2135	hgsc.bcm.edu	hg19	1	101339876	101339876	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EXTL2	NM_001261441	exon6	c.T639C	p.G213G	CTGGTCACCATTT	.	125.0	5.0	164.0	0.0	.	57	.	.	Atlas-SNP
SLC30A7	148867	hgsc.bcm.edu	hg19	1	101379339	101379339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC30A7	NM_133496	exon6	c.G632T	p.G211V	CTCATGGACATGG	.	84.0	4.0	123.0	0.0	.	33	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103428283	103428283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COL11A1	NM_080629	exon39	c.C2986T	p.R996C	GCCCACGTTCCCC	.	166.0	7.0	273.0	0.0	.	972	.	.	Atlas-SNP
FAM212B	55924	hgsc.bcm.edu	hg19	1	112270030	112270030	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	FAM212B,NS,carcinoma,0,2	FAM212B	NM_019099	exon2	c.C454T	p.R152X	GCTGTCGATTCCG	.	57.0	4.0	96.0	0.0	.	17	.	.	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	hg19	1	117156433	117156433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IGSF3	NM_001542	exon4	c.G786T	p.M262I	TCGGGTCATAGCA	.	135.0	32.0	180.0	0.0	.	294	.	.	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	hg19	1	152192435	152192435	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	HRNR,right_upper_lobe,carcinoma,0,1	HRNR	NM_001009931	exon3	c.G1670C	p.S557T	CCATAGCTGGAAG	.	291.0	27.0	255.0	0.0	.	403	.	.	Atlas-SNP
TMEM79	84283	hgsc.bcm.edu	hg19	1	156255196	156255196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM79	NM_032323	exon2	c.A179G	p.E60G	CCATAGAGGGGGC	.	88.0	5.0	95.0	0.0	.	43	.	.	Atlas-SNP
APOA1BP	128240	hgsc.bcm.edu	hg19	1	156563722	156563722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	APOA1BP	NM_144772	exon6	c.T713C	p.L238P	ACTTGCTCATATC	.	143.0	6.0	135.0	0.0	.	16	.	.	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	hg19	1	156954223	156954223	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARHGEF11	NM_014784	exon3	c.T131C	p.V44A	CGTTGAACGAGAC	.	100.0	4.0	87.0	0.0	.	168	.	.	Atlas-SNP
FCRL5	83416	hgsc.bcm.edu	hg19	1	157497528	157497528	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FCRL5	NM_031281	exon9	c.C1839T	p.P613P	TCCAGAGGGGGCT	.	218.0	140.0	222.0	0.0	.	177	.	.	Atlas-SNP
DCAF8	50717	hgsc.bcm.edu	hg19	1	160192562	160192562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DCAF8	NM_015726	exon11	c.T1319C	p.V440A	AAATTGACGCCTT	.	118.0	5.0	99.0	0.0	.	64	.	.	Atlas-SNP
USP21	27005	hgsc.bcm.edu	hg19	1	161134677	161134677	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP21	NM_012475	exon11	c.T1437C	p.G479G	AGTAGGTGTAGAC	.	199.0	9.0	205.0	0.0	.	63	.	.	Atlas-SNP
RGSL1	353299	hgsc.bcm.edu	hg19	1	182443271	182443271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RGSL1	NM_001137669	exon6	c.T1025C	p.L342P	CCCACCTGAGGAC	.	137.0	6.0	121.0	0.0	.	111	.	.	Atlas-SNP
SHCBP1L	81626	hgsc.bcm.edu	hg19	1	182921997	182921997	+	Missense_Mutation	SNP	T	T	C	rs199811188	bycluster	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SHCBP1L	NM_030933	exon1	c.A272G	p.E91G	AGGGGCTCCTCCG	.	36.0	4.0	32.0	0.0	.	64	.	.	Atlas-SNP
KIF21B	23046	hgsc.bcm.edu	hg19	1	200978024	200978024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIF21B	NM_017596	exon3	c.A320G	p.E107G	TCCTCCTCCGACG	.	100.0	6.0	101.0	0.0	.	208	.	.	Atlas-SNP
KLHL12	59349	hgsc.bcm.edu	hg19	1	202887515	202887515	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHL12	NM_021633	exon4	c.T351C	p.G117G	TTTCACACCTAGG	.	95.0	5.0	88.0	0.0	.	50	.	.	Atlas-SNP
ANGEL2	90806	hgsc.bcm.edu	hg19	1	213178764	213178764	+	Missense_Mutation	SNP	T	T	C	rs144576191	bycluster	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANGEL2	NM_144567	exon5	c.A745G	p.R249G	GTTTCCTTCCTGT	.	91.0	4.0	60.0	0.0	.	45	.	T|1.000;C|0.000	Atlas-SNP
EXOC8	149371	hgsc.bcm.edu	hg19	1	231472089	231472089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EXOC8	NM_175876	exon1	c.T1403C	p.L468P	GTCTCGAGAAGGC	.	93.0	5.0	103.0	0.0	.	42	.	.	Atlas-SNP
NID1	4811	hgsc.bcm.edu	hg19	1	236228260	236228260	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NID1	NM_002508	exon1	c.A120G	p.G40G	CCCCTGTCCGGGG	.	118.0	9.0	83.0	0.0	.	196	.	.	Atlas-SNP
HEATR1	55127	hgsc.bcm.edu	hg19	1	236715301	236715301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEATR1	NM_018072	exon44	c.A6344G	p.E2115G	TTACCTTCCATCA	.	116.0	6.0	97.0	0.0	.	197	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237666628	237666628	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RYR2	NM_001035	exon22	c.A2436T	p.K812N	ATTCAAATTTCTT	.	204.0	31.0	175.0	0.0	.	1273	.	.	Atlas-SNP
OR6F1	343169	hgsc.bcm.edu	hg19	1	247875696	247875696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	OR6F1,NS,carcinoma,0,1	OR6F1	NM_001005286	exon1	c.A362G	p.D121G	CAGCGGTCATAAG	.	100.0	4.0	101.0	0.0	.	88	.	.	Atlas-SNP
TPO	7173	hgsc.bcm.edu	hg19	2	1440149	1440149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TPO	NM_175719	exon5	c.A475G	p.N159D	GCTTGCAACAACA	.	94.0	4.0	195.0	0.0	.	224	.	.	Atlas-SNP
MYT1L	23040	hgsc.bcm.edu	hg19	2	1915833	1915833	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYT1L	NM_015025	exon12	c.G1662T	p.T554T	GCGCCCCGTGCAG	.	75.0	4.0	110.0	0.0	.	241	.	.	Atlas-SNP
KIDINS220	57498	hgsc.bcm.edu	hg19	2	8931198	8931198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIDINS220	NM_020738	exon13	c.A1433G	p.K478R	TCTAGTTTCTTGA	.	98.0	4.0	190.0	0.0	.	136	.	.	Atlas-SNP
ODC1	4953	hgsc.bcm.edu	hg19	2	10582278	10582278	+	Missense_Mutation	SNP	G	G	T	rs375952999	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	ODC1,NS,carcinoma,+1,1	ODC1	NM_002539	exon9	c.C773A	p.A258E	TCCAACGCTGGGT	.	116.0	5.0	177.0	1.0	.	40	.	.	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	hg19	2	11770126	11770126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GREB1	NM_014668	exon26	c.A4502G	p.E1501G	TAGGAGAGGAGAT	.	116.0	7.0	206.0	0.0	.	308	.	.	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15613387	15613387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NBAS	NM_015909	exon16	c.A1684G	p.R562G	ACTTCCTCCACTG	.	90.0	5.0	145.0	0.0	.	246	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21247880	21247880	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	APOB,NS,carcinoma,-1,1	APOB	NM_000384	exon16	c.C2361A	p.A787A	GAGACTGGCAAAA	.	53.0	3.0	79.0	0.0	.	761	.	.	Atlas-SNP
CCDC164	92749	hgsc.bcm.edu	hg19	2	26652560	26652560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CCDC164	NM_145038	exon5	c.T605C	p.L202P	TCTGCCTGCTTCT	.	94.0	4.0	137.0	0.0	.	84	.	.	Atlas-SNP
AGBL5	60509	hgsc.bcm.edu	hg19	2	27276891	27276891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AGBL5	NM_021831	exon4	c.A515G	p.D172G	AGCTAGACCAGCG	.	89.0	5.0	140.0	0.0	.	126	.	.	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	hg19	2	28843759	28843759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLB1	NM_153021	exon49	c.G3441T	p.K1147N	GAAGAAGTTCAAC	.	57.0	4.0	124.0	0.0	.	255	.	.	Atlas-SNP
CRIM1	51232	hgsc.bcm.edu	hg19	2	36771541	36771541	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CRIM1	NM_016441	exon15	c.C2646A	p.T882T	ACCAACCAATATA	.	90.0	5.0	119.0	0.0	.	88	.	.	Atlas-SNP
HEATR5B	54497	hgsc.bcm.edu	hg19	2	37227915	37227915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEATR5B	NM_019024	exon33	c.A5359G	p.R1787G	ATATTCTTGCAAT	.	100.0	4.0	174.0	0.0	.	185	.	.	Atlas-SNP
DHX57	90957	hgsc.bcm.edu	hg19	2	39042772	39042772	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DHX57	NM_198963	exon20	c.T3497A	p.F1166Y	TCCGTGAATTGTC	.	95.0	14.0	159.0	0.0	.	127	.	.	Atlas-SNP
CAMKMT	79823	hgsc.bcm.edu	hg19	2	44931461	44931461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CAMKMT	NM_024766	exon4	c.T416C	p.L139P	ACTGCCTCAAGCA	.	85.0	4.0	104.0	0.0	.	20	.	.	Atlas-SNP
EPCAM	4072	hgsc.bcm.edu	hg19	2	47600664	47600664	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EPCAM	NM_002354	exon2	c.C139T	p.Q47X	CAATGCCAGTGTA	.	94.0	4.0	135.0	0.0	.	27	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54871648	54871648	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPTBN1	NM_003128	exon20	c.C4194A	p.G1398G	GCACGGCCTGGAG	.	91.0	4.0	201.0	0.0	.	378	.	.	Atlas-SNP
SMEK2	57223	hgsc.bcm.edu	hg19	2	55844327	55844327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMEK2	NM_001122964	exon1	c.T95C	p.V32A	TCCTCCACGTAAG	.	122.0	5.0	175.0	0.0	.	86	.	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61505341	61505341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP34	NM_014709	exon41	c.G5392A	p.V1798I	GTTTAACAACACT	.	85.0	4.0	131.0	0.0	.	334	.	.	Atlas-SNP
CYP26B1	56603	hgsc.bcm.edu	hg19	2	72359670	72359670	+	Missense_Mutation	SNP	C	C	T	rs370211150		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYP26B1	NM_019885	exon6	c.G1225A	p.V409M	CGTTCACGTCTTT	.	119.0	5.0	206.0	0.0	.	73	.	.	Atlas-SNP
SMYD5	10322	hgsc.bcm.edu	hg19	2	73446019	73446019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMYD5	NM_006062	exon2	c.C127T	p.R43W	CTCATCCGGAAGG	.	124.0	6.0	224.0	0.0	.	58	.	.	Atlas-SNP
TET3	200424	hgsc.bcm.edu	hg19	2	74274104	74274104	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TET3	NM_144993	exon1	c.T655C	p.L219L	ATCAGCTTGCAGA	.	112.0	5.0	157.0	0.0	.	101	.	.	Atlas-SNP
TET3	200424	hgsc.bcm.edu	hg19	2	74328880	74328880	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	TET3,NS,carcinoma,0,1	TET3	NM_144993	exon9	c.C4560T	p.A1520A	CGTGGCCGTGGCC	.	42.0	2.0	61.0	0.0	.	101	.	.	Atlas-SNP
TTC31	64427	hgsc.bcm.edu	hg19	2	74719856	74719856	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTC31	NM_022492	exon12	c.C1245A	p.C415X	CTCTTGCCTTCTC	.	63.0	4.0	158.0	0.0	.	23	.	.	Atlas-SNP
LOXL3	84695	hgsc.bcm.edu	hg19	2	74761507	74761507	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LOXL3	NM_032603	exon11	c.T1875C	p.N625N	GGTGCCATTTGGG	.	287.0	64.0	435.0	0.0	.	73	.	.	Atlas-SNP
LRRTM4	80059	hgsc.bcm.edu	hg19	2	77746328	77746328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	LRRTM4_ENST00000409093,NS,carcinoma,0,2	LRRTM4	NM_024993	exon3	c.G667T	p.A223S	AATGAGCAAAGTT	.	76.0	4.0	89.0	0.0	.	334	.	.	Atlas-SNP
TCF7L1	83439	hgsc.bcm.edu	hg19	2	85533589	85533589	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TCF7L1	NM_031283	exon10	c.T1164C	p.S388S	CCTGTCTCGAGAA	.	95.0	4.0	124.0	0.0	.	44	.	.	Atlas-SNP
POLR1A	25885	hgsc.bcm.edu	hg19	2	86332884	86332884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POLR1A	NM_015425	exon1	c.A16G	p.N6D	GCATGTTCTTGGA	.	88.0	4.0	140.0	0.0	.	137	.	.	Atlas-SNP
KANSL3	55683	hgsc.bcm.edu	hg19	2	97276523	97276523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001115016	exon11	c.G1259T	p.R420L	TTCTCCCGGAAGT	.	69.0	4.0	93.0	0.0	.	.	.	.	Atlas-SNP
COX5B	1329	hgsc.bcm.edu	hg19	2	98262581	98262581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COX5B	NM_001862	exon1	c.C32T	p.T11M	CTGGAACGCTGGC	.	44.0	4.0	51.0	0.0	.	9	.	.	Atlas-SNP
AFF3	3899	hgsc.bcm.edu	hg19	2	100209828	100209828	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AFF3	NM_001025108	exon14	c.T2370C	p.S790S	CCAGAGAGACCTG	.	70.0	4.0	136.0	0.0	.	164	.	.	Atlas-SNP
SLC9A4	389015	hgsc.bcm.edu	hg19	2	103095346	103095346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC9A4	NM_001011552	exon2	c.T305C	p.L102P	GCTGCCTCCTCAT	.	64.0	4.0	112.0	0.0	.	115	.	.	Atlas-SNP
ST6GAL2	84620	hgsc.bcm.edu	hg19	2	107459506	107459506	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ST6GAL2	NM_032528	exon2	c.T928C	p.L310L	CGCCCAAGGAAGA	.	93.0	4.0	176.0	0.0	.	159	.	.	Atlas-SNP
SULT1C2	6819	hgsc.bcm.edu	hg19	2	108910710	108910710	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SULT1C2	NM_001056	exon3	c.G177T	p.V59V	AATTGTGGATATG	.	93.0	5.0	73.0	0.0	.	82	.	.	Atlas-SNP
SULT1C2	6819	hgsc.bcm.edu	hg19	2	108910807	108910807	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SULT1C2	NM_001056	exon3	c.T274A	p.S92T	CAACCTTCTGGTG	.	92.0	4.0	113.0	0.0	.	82	.	.	Atlas-SNP
NPHP1	4867	hgsc.bcm.edu	hg19	2	110926056	110926056	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NPHP1	NM_207181	exon6	c.A597G	p.E199E	AAGACCTTCATTT	.	68.0	20.0	119.0	0.0	.	68	.	.	Atlas-SNP
C1QL2	165257	hgsc.bcm.edu	hg19	2	119915747	119915747	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	C1QL2,colon,carcinoma,0,1	C1QL2	NM_182528	exon1	c.C99T	p.C33C	AGGGTCGCAGATC	.	33.0	2.0	22.0	0.0	.	25	.	.	Atlas-SNP
MYO7B	4648	hgsc.bcm.edu	hg19	2	128335802	128335802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYO7B	NM_001080527	exon9	c.G944T	p.S315I	CCGAGAGCTGGGA	.	116.0	5.0	169.0	0.0	.	359	.	.	Atlas-SNP
IMP4	92856	hgsc.bcm.edu	hg19	2	131104030	131104030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IMP4	NM_033416	exon9	c.A865G	p.S289G	TTCCTGAGCACCG	.	74.0	5.0	105.0	0.0	.	35	.	.	Atlas-SNP
GPR148	344561	hgsc.bcm.edu	hg19	2	131487678	131487678	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR148	NM_207364	exon1	c.C954T	p.Y318Y	CACATACCTGTAC	.	81.0	5.0	91.0	0.0	.	54	.	.	Atlas-SNP
MMADHC	27249	hgsc.bcm.edu	hg19	2	150435986	150435986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MMADHC	NM_015702	exon4	c.A331G	p.R111G	CATGTCTTTCACT	.	95.0	4.0	139.0	0.0	.	20	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152402893	152402893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NEB	NM_001271208	exon134	c.A20432G	p.D6811G	ACCATGTCAGGAG	.	99.0	4.0	130.0	0.0	.	1697	.	.	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160242972	160242972	+	Silent	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAZ2B	NM_013450	exon22	c.T3363G	p.L1121L	CTCTTGAAGAACA	.	153.0	34.0	255.0	0.0	.	196	.	.	Atlas-SNP
RBMS1	5937	hgsc.bcm.edu	hg19	2	161133886	161133886	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RBMS1	NM_016836	exon12	c.T1071C	p.P357P	CGTTGCAGGCATG	.	95.0	6.0	146.0	0.0	.	34	.	.	Atlas-SNP
TBR1	10716	hgsc.bcm.edu	hg19	2	162275531	162275531	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBR1	NM_006593	exon4	c.C1098T	p.F366F	TCAGTTCATCGCC	.	89.0	5.0	122.0	0.0	.	59	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170136002	170136002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRP2	NM_004525	exon12	c.A1445G	p.Y482C	ACTAGATAGATTT	.	144.0	45.0	201.0	0.0	.	751	.	.	Atlas-SNP
UBR3	130507	hgsc.bcm.edu	hg19	2	170806434	170806434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UBR3	NM_172070	exon23	c.T3404C	p.V1135A	CTGCCGTGGAAAG	.	87.0	4.0	156.0	0.0	.	182	.	.	Atlas-SNP
UBR3	130507	hgsc.bcm.edu	hg19	2	170897404	170897404	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UBR3	NM_172070	exon32	c.A4569G	p.E1523E	ATATGAAGAACAA	.	93.0	4.0	151.0	0.0	.	182	.	.	Atlas-SNP
SCRN3	79634	hgsc.bcm.edu	hg19	2	175269041	175269041	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SCRN3	NM_024583	exon5	c.A752C	p.K251T	AGCACAAAGGTAA	.	76.0	21.0	107.0	0.0	.	76	.	.	Atlas-SNP
EVX2	344191	hgsc.bcm.edu	hg19	2	176948503	176948503	+	Missense_Mutation	SNP	A	A	G	rs375658297		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EVX2	NM_001080458	exon1	c.T2C	p.M1T	TCCATCATCTCAG	.	83.0	4.0	179.0	0.0	.	51	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179393915	179393915	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon360	c.T106563C	p.S35521S	TTGTGTAGAGACT	.	63.0	4.0	99.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179396537	179396537	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon358	c.T104805C	p.P34935P	TGTGAAAGGCTGC	.	144.0	43.0	242.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179458397	179458397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon298	c.C58630A	p.L19544I	CAAGTAGTTTAGA	.	201.0	56.0	269.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179605820	179605820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon48	c.A12140G	p.E4047G	GGAGCCTCTGGTG	.	59.0	4.0	81.0	0.0	.	18412	.	.	Atlas-SNP
COL5A2	1290	hgsc.bcm.edu	hg19	2	189950498	189950498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COL5A2	NM_000393	exon10	c.G691A	p.G231S	CACCACCCTACAG	.	55.0	4.0	56.0	0.0	.	230	.	.	Atlas-SNP
AOX1	316	hgsc.bcm.edu	hg19	2	201502979	201502979	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AOX1	NM_001159	exon23	c.A2522G	p.D841G	GAGAAGACATGTT	.	91.0	4.0	141.0	0.0	.	152	.	.	Atlas-SNP
ALS2CR8	79800	hgsc.bcm.edu	hg19	2	203817314	203817314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ALS2CR8	NM_024744	exon6	c.G339T	p.Q113H	TGGACAGGTACTT	.	61.0	5.0	114.0	0.0	.	56	.	.	Atlas-SNP
INO80D	54891	hgsc.bcm.edu	hg19	2	206893049	206893049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INO80D	NM_017759	exon6	c.G1084A	p.D362N	CATCATCATCATC	.	59.0	4.0	61.0	0.0	.	134	.	.	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	hg19	2	207175357	207175357	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZDBF2	NM_020923	exon5	c.G6105A	p.W2035X	TAGTTGGGATAAT	.	73.0	5.0	119.0	0.0	.	531	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215807647	215807647	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCA12	NM_015657	exon43	c.6482+2T>C	.	TTCTTCACCTGCT	.	85.0	4.0	114.0	0.0	.	368	.	.	Atlas-SNP
TNS1	7145	hgsc.bcm.edu	hg19	2	218712293	218712293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TNS1	NM_022648	exon17	c.T2572C	p.S858P	TCCGGGAGGGGTC	.	107.0	5.0	135.0	0.0	.	251	.	.	Atlas-SNP
ARPC2	10109	hgsc.bcm.edu	hg19	2	219114132	219114132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARPC2	NM_005731	exon8	c.T722C	p.I241T	ACACCATCAACCT	.	110.0	5.0	129.0	0.0	.	25	.	.	Atlas-SNP
GPBAR1	151306	hgsc.bcm.edu	hg19	2	219127978	219127978	+	Silent	SNP	C	C	T	rs200360810	bycluster	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPBAR1	NM_170699	exon2	c.C531T	p.A177A	GCCCGCCGTGGGT	.	89.0	4.0	108.0	0.0	.	22	.	.	Atlas-SNP
SLC11A1	6556	hgsc.bcm.edu	hg19	2	219251389	219251389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC11A1	NM_000578	exon5	c.A425G	p.E142G	CCATCGAGCTAGC	.	24.0	4.0	43.0	0.0	.	41	.	.	Atlas-SNP
CYP27A1	1593	hgsc.bcm.edu	hg19	2	219674345	219674345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYP27A1	NM_000784	exon2	c.G301A	p.G101R	TACTTAGGGCCTC	.	75.0	20.0	70.0	0.0	.	52	.	.	Atlas-SNP
ATG9A	79065	hgsc.bcm.edu	hg19	2	220088702	220088702	+	Missense_Mutation	SNP	C	C	A	rs186498321	by1000genomes;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATG9A	NM_001077198	exon9	c.G1308T	p.Q436H	GAGCAGCTGCTCA	.	101.0	5.0	159.0	0.0	.	50	.	C|0.999;T|0.001	Atlas-SNP
ANKZF1	55139	hgsc.bcm.edu	hg19	2	220097005	220097005	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANKZF1	NM_001042410	exon4	c.G285A	p.W95X	TGACTGGCATCGG	.	101.0	5.0	156.0	0.0	.	45	.	.	Atlas-SNP
DNPEP	23549	hgsc.bcm.edu	hg19	2	220251108	220251108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DNPEP	NM_012100	exon5	c.A359G	p.Q120R	CCCACCTGGCTGC	.	66.0	4.0	116.0	0.0	.	40	.	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230683119	230683119	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRIP12	NM_004238	exon8	c.A1416G	p.T472T	TCCCAGTGTCTCC	.	171.0	7.0	285.0	0.0	.	207	.	.	Atlas-SNP
SP140	11262	hgsc.bcm.edu	hg19	2	231103553	231103553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	SP140,caecum,carcinoma,0,1	SP140	NM_001005176	exon4	c.G484T	p.A162S	AGCCTAGCACATA	.	80.0	4.0	120.0	0.0	.	121	.	.	Atlas-SNP
CXCR7	57007	hgsc.bcm.edu	hg19	2	237489260	237489260	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CXCR7	NM_020311	exon2	c.A152T	p.Y51F	TCATTTACATTTT	.	74.0	5.0	140.0	0.0	.	72	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238270467	238270467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COL6A3	NM_004369	exon15	c.T6071C	p.I2024T	TCGGCAATGTTGT	.	73.0	4.0	116.0	0.0	.	608	.	.	Atlas-SNP
PRLH	51052	hgsc.bcm.edu	hg19	2	238475761	238475761	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRLH	NM_015893	exon2	c.A207G	p.R69R	CCTGCGACCCCGG	.	121.0	5.0	237.0	0.0	.	8	.	.	Atlas-SNP
GPR35	2859	hgsc.bcm.edu	hg19	2	241570144	241570144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR35	NM_001195382	exon6	c.T868C	p.Y290H	GCCCTGTACATAA	.	127.0	6.0	209.0	0.0	.	43	.	.	Atlas-SNP
PASK	23178	hgsc.bcm.edu	hg19	2	242063478	242063478	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PASK	NM_015148	exon11	c.A2790G	p.K930K	GAGGTCTTTCACC	.	110.0	5.0	165.0	0.0	.	230	.	.	Atlas-SNP
MTMR14	64419	hgsc.bcm.edu	hg19	3	9714391	9714391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTMR14	NM_022485	exon7	c.G700T	p.D234Y	AAGGTGGACAAAG	.	86.0	4.0	148.0	0.0	.	43	.	.	Atlas-SNP
BRPF1	7862	hgsc.bcm.edu	hg19	3	9788027	9788027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	BRPF1,NS,carcinoma,0,1	BRPF1	NM_001003694	exon13	c.G3368T	p.G1123V	ACCATGGGGTTCC	.	68.0	3.0	105.0	0.0	.	104	.	.	Atlas-SNP
VHL	7428	hgsc.bcm.edu	hg19	3	10191490	10191490	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	VHL,NS,carcinoma,+1,1	VHL	NM_000551	exon3	c.A483G	p.R161R	AGAGCGATGCCTC	.	40.0	2.0	66.0	0.0	.	2192	.	.	Atlas-SNP
FBLN2	2199	hgsc.bcm.edu	hg19	3	13678012	13678012	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBLN2	NM_001004019	exon17	c.T3282C	p.G1094G	CCAGGGTAGCTTC	.	122.0	5.0	144.0	0.0	.	137	.	.	Atlas-SNP
FGD5	152273	hgsc.bcm.edu	hg19	3	14861366	14861366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FGD5	NM_152536	exon1	c.A788G	p.Q263R	GGGTCCAGGAGGC	.	90.0	4.0	101.0	0.0	.	248	.	.	Atlas-SNP
TOP2B	7155	hgsc.bcm.edu	hg19	3	25671863	25671863	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TOP2B	NM_001068	exon12	c.A1488G	p.R496R	TCCGTATCTGTCT	.	121.0	5.0	226.0	0.0	.	98	.	.	Atlas-SNP
TRANK1	9881	hgsc.bcm.edu	hg19	3	36875346	36875346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRANK1	NM_014831	exon21	c.T5596C	p.F1866L	AGTAAAACTGACT	.	110.0	5.0	189.0	0.0	.	398	.	.	Atlas-SNP
CTDSPL	10217	hgsc.bcm.edu	hg19	3	38022326	38022326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CTDSPL	NM_001008392	exon8	c.T799C	p.Y267H	GACGTGTACAGCA	.	71.0	4.0	123.0	0.0	.	17	.	.	Atlas-SNP
VILL	50853	hgsc.bcm.edu	hg19	3	38038608	38038608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VILL	NM_015873	exon5	c.T491C	p.F164S	ACATCTTCCTGCT	.	94.0	4.0	148.0	0.0	.	61	.	.	Atlas-SNP
CSRNP1	64651	hgsc.bcm.edu	hg19	3	39184689	39184689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CSRNP1	NM_033027	exon5	c.T1627C	p.S543P	GTGGAGACAGGCC	.	77.0	4.0	130.0	0.0	.	59	.	.	Atlas-SNP
MOBP	4336	hgsc.bcm.edu	hg19	3	39554906	39554906	+	Missense_Mutation	SNP	A	A	G	rs369235076		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MOBP	NM_182935	exon4	c.A239G	p.K80R	CAAAGAAGAAGTG	.	69.0	4.0	134.0	0.0	.	10	.	.	Atlas-SNP
MYRIP	25924	hgsc.bcm.edu	hg19	3	40231439	40231439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYRIP	NM_015460	exon10	c.T1150C	p.S384P	GTGGCCTCCAGTG	.	140.0	6.0	228.0	0.0	.	98	.	.	Atlas-SNP
ENTPD3	956	hgsc.bcm.edu	hg19	3	40433587	40433587	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ENTPD3	NM_001248	exon3	c.G114A	p.V38V	ACTTGTGAGTATC	.	101.0	5.0	158.0	0.0	.	48	.	.	Atlas-SNP
ZDHHC3	51304	hgsc.bcm.edu	hg19	3	44975411	44975411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZDHHC3	NM_016598	exon4	c.A497G	p.E166G	TTGTTCTCGCCTA	.	99.0	4.0	147.0	0.0	.	25	.	.	Atlas-SNP
ALS2CL	259173	hgsc.bcm.edu	hg19	3	46713386	46713386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	ALS2CL,NS,adenocarcinoma,0,1	ALS2CL	NM_001190707	exon24	c.T2672C	p.V891A	CGCGACACCACGT	.	65.0	4.0	104.0	1.0	.	78	.	.	Atlas-SNP
NBEAL2	23218	hgsc.bcm.edu	hg19	3	47040568	47040568	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NBEAL2	NM_015175	exon24	c.G3504T	p.R1168R	AGTGCGGCCAGGG	.	69.0	4.0	116.0	0.0	.	267	.	.	Atlas-SNP
QRICH1	54870	hgsc.bcm.edu	hg19	3	49094779	49094779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	QRICH1	NM_198880	exon3	c.A854G	p.D285G	AGTAAGTCTGGCC	.	174.0	7.0	193.0	0.0	.	48	.	.	Atlas-SNP
LAMB2	3913	hgsc.bcm.edu	hg19	3	49162736	49162736	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LAMB2	NM_002292	exon19	c.A2670G	p.T890T	AGCGCCTGTGTGG	.	72.0	4.0	119.0	0.0	.	156	.	.	Atlas-SNP
VPRBP	9730	hgsc.bcm.edu	hg19	3	51456190	51456190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VPRBP	NM_014703	exon15	c.A3218G	p.Q1073R	TCCTCCTGTCCAC	.	74.0	4.0	125.0	0.0	.	107	.	.	Atlas-SNP
WDR82	80335	hgsc.bcm.edu	hg19	3	52293863	52293863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WDR82	NM_025222	exon6	c.A569G	p.Q190R	TCATACTGCATCT	.	35.0	5.0	47.0	0.0	.	19	.	.	Atlas-SNP
NEK4	6787	hgsc.bcm.edu	hg19	3	52800369	52800369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NEK4	NM_003157	exon3	c.T383C	p.L128P	CGATGAAGGATGT	.	97.0	4.0	117.0	0.0	.	51	.	.	Atlas-SNP
ITIH3	3699	hgsc.bcm.edu	hg19	3	52831920	52831920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ITIH3	NM_002217	exon6	c.C637A	p.L213I	AGCGCCCTCACCA	.	75.0	4.0	113.0	0.0	.	132	.	.	Atlas-SNP
TKT	7086	hgsc.bcm.edu	hg19	3	53263137	53263137	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TKT	NM_001258028	exon11	c.C1305T	p.S435S	CATCTGGGAGGGC	.	86.0	4.0	111.0	0.0	.	38	.	.	Atlas-SNP
FAM107A	11170	hgsc.bcm.edu	hg19	3	58553082	58553082	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM107A	NM_001076778	exon3	c.T180C	p.G60G	GTCCACACCAAGG	.	112.0	5.0	154.0	0.0	.	33	.	.	Atlas-SNP
PSMD6	9861	hgsc.bcm.edu	hg19	3	64005066	64005066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PSMD6	NM_001271779	exon4	c.G562T	p.G188C	GGTGACCCAGGGC	.	94.0	4.0	152.0	0.0	.	30	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77612404	77612404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ROBO2	NM_002942	exon11	c.A1606G	p.N536D	ACTAAGAACAGTG	.	117.0	6.0	179.0	0.0	.	527	.	.	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	hg19	3	96706219	96706219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	EPHA6_ENST00000389672,caecum,carcinoma,0,3	EPHA6	NM_001080448	exon3	c.A496G	p.T166A	ATTCACACATACC	.	91.0	4.0	117.0	0.0	.	439	.	.	Atlas-SNP
NIT2	56954	hgsc.bcm.edu	hg19	3	100073624	100073624	+	Missense_Mutation	SNP	T	T	C	rs17851799		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NIT2	NM_020202	exon9	c.T692C	p.V231A	GGGAGGTTCTAGC	.	89.0	4.0	136.0	0.0	.	35	.	T|1.000;|0.000	Atlas-SNP
IMPG2	50939	hgsc.bcm.edu	hg19	3	100976517	100976517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IMPG2	NM_016247	exon10	c.G1009A	p.G337S	CAAGGCCATGGTT	.	80.0	4.0	144.0	0.0	.	164	.	.	Atlas-SNP
SIDT1	54847	hgsc.bcm.edu	hg19	3	113300279	113300279	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIDT1	NM_017699	exon6	c.C735A	p.A245A	AGCTGCCATCACG	.	89.0	4.0	136.0	0.0	.	99	.	.	Atlas-SNP
ADPRH	141	hgsc.bcm.edu	hg19	3	119301263	119301263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADPRH	NM_001125	exon3	c.C247A	p.L83I	TACCTCCTTGCTA	.	72.0	4.0	137.0	0.0	.	33	.	.	Atlas-SNP
PLA1A	51365	hgsc.bcm.edu	hg19	3	119334916	119334916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLA1A	NM_015900	exon6	c.A722G	p.D241G	GCCAAGACCAACC	.	84.0	4.0	128.0	0.0	.	65	.	.	Atlas-SNP
UROC1	131669	hgsc.bcm.edu	hg19	3	126220121	126220121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UROC1	NM_001165974	exon11	c.A1085G	p.E362G	CTTGCTTCCCTGG	.	50.0	4.0	83.0	0.0	.	150	.	.	Atlas-SNP
KBTBD12	166348	hgsc.bcm.edu	hg19	3	127646843	127646843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KBTBD12	NM_207335	exon2	c.A1307G	p.N436S	TGAATAATAAACT	.	68.0	4.0	118.0	0.0	.	41	.	.	Atlas-SNP
NEK11	79858	hgsc.bcm.edu	hg19	3	130881262	130881262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NEK11	NM_024800	exon11	c.A973G	p.I325V	AAAAGGATCCACC	.	146.0	6.0	194.0	0.0	.	76	.	.	Atlas-SNP
PCOLCE2	26577	hgsc.bcm.edu	hg19	3	142607734	142607734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCOLCE2	NM_013363	exon1	c.G5A	p.R2K	GCGCCCCTCATGG	.	89.0	4.0	85.0	0.0	.	63	.	.	Atlas-SNP
HPS3	84343	hgsc.bcm.edu	hg19	3	148847621	148847621	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HPS3	NM_032383	exon1	c.G111T	p.A37A	GGCGGCGGGCTGC	.	68.0	4.0	92.0	0.0	.	104	.	.	Atlas-SNP
WWTR1	25937	hgsc.bcm.edu	hg19	3	149375035	149375035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WWTR1	NM_001168278	exon3	c.T59C	p.V20A	TGCGTGACGTGGA	.	88.0	4.0	133.0	0.0	.	42	.	.	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	hg19	3	150834201	150834201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MED12L	NM_053002	exon2	c.C176T	p.A59V	GCTCAGCCAGAAA	.	93.0	5.0	138.0	0.0	.	271	.	.	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	hg19	3	150911344	150911344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MED12L	NM_053002	exon14	c.T2036C	p.V679A	TGTCAGTTAATTG	.	122.0	5.0	148.0	0.0	.	271	.	.	Atlas-SNP
ARHGEF26	26084	hgsc.bcm.edu	hg19	3	153840493	153840493	+	Missense_Mutation	SNP	A	A	G	rs376185280		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARHGEF26	NM_001251962	exon2	c.A712G	p.N238D	AGTACAAACAGCC	.	56.0	4.0	64.0	0.0	.	158	.	.	Atlas-SNP
PLCH1	23007	hgsc.bcm.edu	hg19	3	155200108	155200108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLCH1	NM_001130960	exon23	c.A3731G	p.K1244R	TTTCCCTTGCAAA	.	83.0	4.0	127.0	0.0	.	406	.	.	Atlas-SNP
CCNL1	57018	hgsc.bcm.edu	hg19	3	156877742	156877742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CCNL1	NM_020307	exon1	c.T142C	p.S48P	CTTCCGAGTACAG	.	163.0	7.0	230.0	0.0	.	53	.	.	Atlas-SNP
TRIM59	286827	hgsc.bcm.edu	hg19	3	160156325	160156325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRIM59	NM_173084	exon3	c.A647G	p.Q216R	TATTCTTGATTAA	.	122.0	5.0	212.0	0.0	.	42	.	.	Atlas-SNP
SLC2A2	6514	hgsc.bcm.edu	hg19	3	170732421	170732421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC2A2	NM_000340	exon3	c.A208C	p.I70L	ATGAGATTGTGGG	.	481.0	135.0	698.0	0.0	.	71	.	.	Atlas-SNP
CHRD	8646	hgsc.bcm.edu	hg19	3	184104453	184104453	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	CHRD_ENST00000342610,lower_third,carcinoma,0,2	CHRD	NM_003741	exon16	c.C2106T	p.P702P	AGACCCCAACACA	.	49.0	2.0	75.0	0.0	.	149	.	.	Atlas-SNP
DGKG	1608	hgsc.bcm.edu	hg19	3	185970912	185970912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DGKG	NM_001346	exon18	c.G1570A	p.D524N	CAAGGTCATTTCC	.	69.0	7.0	111.0	0.0	.	98	.	.	Atlas-SNP
TBCCD1	55171	hgsc.bcm.edu	hg19	3	186272247	186272247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBCCD1	NM_001134415	exon6	c.T1340C	p.V447A	CACACAACCATTG	.	98.0	4.0	159.0	0.0	.	42	.	.	Atlas-SNP
APOD	347	hgsc.bcm.edu	hg19	3	195306237	195306237	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	APOD	NM_001647	exon2	c.G96T	p.P32P	CTGCACCGGAGGA	.	45.0	4.0	89.0	0.0	.	28	.	.	Atlas-SNP
MUC20	200958	hgsc.bcm.edu	hg19	3	195453275	195453275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MUC20	NM_152673	exon3	c.C1288A	p.P430T	CCCTTCCCCACCA	.	86.0	4.0	118.0	0.0	.	84	.	.	Atlas-SNP
SLC26A1	10861	hgsc.bcm.edu	hg19	4	983570	983570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC26A1	NM_022042	exon3	c.T1157C	p.L386P	GCGGGTAGCACGT	.	111.0	5.0	129.0	0.0	.	44	.	.	Atlas-SNP
SLC26A1	10861	hgsc.bcm.edu	hg19	4	983816	983816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC26A1	NM_022042	exon3	c.T911C	p.L304P	GACACGAGTGTGG	.	72.0	5.0	78.0	0.0	.	44	.	.	Atlas-SNP
TNIP2	79155	hgsc.bcm.edu	hg19	4	2749527	2749527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TNIP2	NM_024309	exon2	c.A422G	p.D141G	AGGACGTCACTGG	.	87.0	4.0	111.0	0.0	.	28	.	.	Atlas-SNP
JAKMIP1	152789	hgsc.bcm.edu	hg19	4	6087245	6087245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	JAKMIP1	NM_001099433	exon4	c.C736A	p.Q246K	CCAGCTGCTCATC	.	90.0	5.0	151.0	0.0	.	250	.	.	Atlas-SNP
ACOX3	8310	hgsc.bcm.edu	hg19	4	8375349	8375349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACOX3	NM_003501	exon16	c.A1835T	p.Y612F	GAGAAGTATCCTC	.	84.0	4.0	123.0	0.0	.	70	.	.	Atlas-SNP
HS3ST1	9957	hgsc.bcm.edu	hg19	4	11401109	11401109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HS3ST1	NM_005114	exon2	c.T521C	p.I174T	TCCTCGATGGACG	.	96.0	4.0	115.0	0.0	.	41	.	.	Atlas-SNP
CC2D2A	57545	hgsc.bcm.edu	hg19	4	15572065	15572065	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CC2D2A	NM_001080522	exon29	c.A3540G	p.R1180R	TGAGAGACACTGG	.	99.0	4.0	194.0	0.0	.	158	.	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	hg19	4	30725244	30725244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCDH7	NM_032457	exon1	c.G2200T	p.D734Y	GTGATGGATGAAA	.	141.0	35.0	238.0	0.0	.	215	.	.	Atlas-SNP
PGM2	55276	hgsc.bcm.edu	hg19	4	37831602	37831602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PGM2	NM_018290	exon2	c.A98G	p.E33G	CTTTGGAGGCAGT	.	124.0	5.0	161.0	0.0	.	45	.	.	Atlas-SNP
KLB	152831	hgsc.bcm.edu	hg19	4	39435941	39435941	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLB	NM_175737	exon2	c.A937T	p.T313S	GAAAACACGATGG	.	197.0	55.0	317.0	0.0	.	95	.	.	Atlas-SNP
UGT2A1	10941	hgsc.bcm.edu	hg19	4	70504997	70504997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UGT2A1	NM_001252274	exon3	c.G965A	p.G322E	AGTTTTCCTAGTT	.	120.0	7.0	212.0	0.0	.	131	.	.	Atlas-SNP
CDKL2	8999	hgsc.bcm.edu	hg19	4	76507088	76507088	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CDKL2	NM_003948	exon11	c.A1437G	p.S479S	ATCATCTGACAGG	.	87.0	4.0	144.0	0.0	.	58	.	.	Atlas-SNP
SCD5	79966	hgsc.bcm.edu	hg19	4	83602015	83602015	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SCD5	NM_024906	exon3	c.A414G	p.S138S	CGTCTCTGAGTAC	.	85.0	4.0	133.0	0.0	.	58	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87687669	87687669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PTPN13	NM_080685	exon27	c.A4343G	p.Q1448R	CAGGACAGGTAAC	.	79.0	4.0	119.0	0.0	.	203	.	.	Atlas-SNP
HERC5	51191	hgsc.bcm.edu	hg19	4	89397168	89397168	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HERC5	NM_016323	exon12	c.T1569C	p.S523S	CCAGTCTTCACTG	.	124.0	5.0	190.0	0.0	.	114	.	.	Atlas-SNP
RAP1GDS1	5910	hgsc.bcm.edu	hg19	4	99300176	99300176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RAP1GDS1	NM_001100426	exon5	c.A373G	p.R125G	GAGGGCAGAAGTG	.	65.0	15.0	129.0	0.0	.	61	.	.	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	hg19	4	104116362	104116362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CENPE	NM_001813	exon5	c.T386C	p.V129A	TAAGATACACGTA	.	128.0	6.0	155.0	0.0	.	253	.	.	Atlas-SNP
LRIT3	345193	hgsc.bcm.edu	hg19	4	110791336	110791336	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRIT3	NM_198506	exon4	c.A1431G	p.Q477Q	GGATCAAACAATG	.	124.0	5.0	214.0	0.0	.	107	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126240414	126240414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAT4	NM_024582	exon1	c.A2848G	p.S950G	ACTATTAGTCTGC	.	100.0	4.0	143.0	0.0	.	1752	.	.	Atlas-SNP
HSPA4L	22824	hgsc.bcm.edu	hg19	4	128716923	128716923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HSPA4L	NM_014278	exon3	c.A166G	p.I56V	CAACAGATAGTCA	.	117.0	5.0	198.0	0.0	.	82	.	.	Atlas-SNP
SMARCA5	8467	hgsc.bcm.edu	hg19	4	144464786	144464786	+	Silent	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMARCA5	NM_003601	exon15	c.T2028A	p.G676G	CGATGGTATTTTG	.	97.0	4.0	150.0	0.0	.	73	.	.	Atlas-SNP
PRMT10	90826	hgsc.bcm.edu	hg19	4	148589795	148589795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRMT10	NM_138364	exon6	c.C848T	p.T283I	CCTTTGGTCTAAA	.	98.0	5.0	122.0	0.0	.	68	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155180908	155180908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DCHS2	NM_017639	exon20	c.G5213A	p.G1738E	AGTTGTCCTATTT	.	61.0	4.0	98.0	0.0	.	594	.	.	Atlas-SNP
GUCY1A3	2982	hgsc.bcm.edu	hg19	4	156631936	156631936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GUCY1A3	NM_001130687	exon6	c.C619T	p.P207S	TTCTTCCCTAAGA	.	96.0	27.0	138.0	0.0	.	133	.	.	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183651371	183651371	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001080477	exon14	c.A2604G	p.R868R	CATCAGAGGCCAA	.	142.0	6.0	209.0	0.0	.	.	.	.	Atlas-SNP
PDLIM3	27295	hgsc.bcm.edu	hg19	4	186446276	186446276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PDLIM3	NM_001257962	exon2	c.T143C	p.V48A	AGGATGACATCTC	.	75.0	4.0	107.0	0.0	.	49	.	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187584675	187584675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAT1	NM_005245	exon3	c.T3358C	p.S1120P	ACGATGAAAGAGG	.	89.0	5.0	144.0	0.0	.	500	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13820548	13820548	+	Nonsense_Mutation	SNP	C	C	A	rs201285946	bycluster;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	DNAH5,colon,carcinoma,0,1	DNAH5	NM_001369	exon41	c.G6748T	p.E2250X	GCGTTTCGAATAG	.	44.0	2.0	66.0	0.0	.	868	.	.	Atlas-SNP
PDZD2	23037	hgsc.bcm.edu	hg19	5	32037370	32037370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	PDZD2,caecum,carcinoma,0,1	PDZD2	NM_178140	exon6	c.G1441T	p.G481C	GTGTGCGGTGCTG	.	65.0	4.0	77.0	1.0	.	306	.	.	Atlas-SNP
NADKD1	133686	hgsc.bcm.edu	hg19	5	36207278	36207278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NADKD1	NM_001085411	exon8	c.A950G	p.K317R	CAGGCCTTTGATC	.	104.0	5.0	116.0	0.0	.	47	.	.	Atlas-SNP
IL6ST	3572	hgsc.bcm.edu	hg19	5	55259292	55259292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IL6ST	NM_175767	exon7	c.A701G	p.E234G	AGTTCCTCTGAGT	.	95.0	4.0	119.0	0.0	.	75	.	.	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	hg19	5	60835544	60835544	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZSWIM6	NM_020928	exon12	c.A2661G	p.P887P	TTTGCCAGACATC	.	98.0	5.0	139.0	0.0	.	51	.	.	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	hg19	5	60839556	60839556	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZSWIM6	NM_020928	exon14	c.T3060C	p.A1020A	CGACGCTGCTACG	.	60.0	4.0	70.0	0.0	.	51	.	.	Atlas-SNP
CRHBP	1393	hgsc.bcm.edu	hg19	5	76249911	76249911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CRHBP	NM_001882	exon3	c.A233G	p.Q78R	GGCCGCAGCTGCA	.	99.0	5.0	190.0	0.0	.	46	.	.	Atlas-SNP
FAM151B	167555	hgsc.bcm.edu	hg19	5	79809580	79809580	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM151B	NM_205548	exon3	c.T309C	p.D103D	GCTGGATTTCAAA	.	89.0	4.0	108.0	0.0	.	25	.	.	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82833999	82833999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VCAN	NM_004385	exon8	c.A5177G	p.K1726R	AAAGGAAGGAGGA	.	71.0	4.0	48.0	0.0	.	498	.	.	Atlas-SNP
DCP2	167227	hgsc.bcm.edu	hg19	5	112349076	112349076	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DCP2	NM_152624	exon11	c.A1158G	p.G386G	TGAGGGACAGCCC	.	71.0	4.0	125.0	0.0	.	34	.	.	Atlas-SNP
PRRC1	133619	hgsc.bcm.edu	hg19	5	126866068	126866068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRRC1	NM_130809	exon5	c.C737A	p.P246H	TGGACCCTGGCAT	.	59.0	4.0	79.0	0.0	.	22	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127800501	127800501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBN2	NM_001999	exon6	c.G742A	p.G248S	GATGGCCCCACGC	.	93.0	4.0	110.0	0.0	.	858	.	.	Atlas-SNP
PROB1	389333	hgsc.bcm.edu	hg19	5	138730638	138730638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001161546	exon1	c.G133A	p.D45N	CAACGTCCGGGGG	.	95.0	4.0	114.0	0.0	.	.	.	.	Atlas-SNP
PCDHB2	56133	hgsc.bcm.edu	hg19	5	140475117	140475117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCDHB2	NM_018936	exon1	c.T743C	p.L248P	AGCTGCTCTATGA	.	83.0	4.0	82.0	0.0	.	163	.	.	Atlas-SNP
PCDHGA10	56106	hgsc.bcm.edu	hg19	5	140793433	140793433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	PCDHGA10,colon,carcinoma,0,1	PCDHGA10	NM_032090	exon1	c.C691T	p.L231F	ACTGTCCTTGTCA	.	53.0	3.0	28.0	0.0	.	114	.	.	Atlas-SNP
DIAPH1	1729	hgsc.bcm.edu	hg19	5	140908052	140908052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DIAPH1	NM_005219	exon23	c.A3116G	p.D1039G	AGCTCGTCTGGAA	.	99.0	4.0	134.0	0.0	.	64	.	.	Atlas-SNP
DPYSL3	1809	hgsc.bcm.edu	hg19	5	146773671	146773671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DPYSL3	NM_001197294	exon14	c.A1982G	p.E661G	ACCCCCTCATCCA	.	113.0	6.0	94.0	0.0	.	58	.	.	Atlas-SNP
CSF1R	1436	hgsc.bcm.edu	hg19	5	149434853	149434853	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CSF1R	NM_005211	exon20	c.A2601G	p.K867K	CACCAGTTTATAG	.	89.0	4.0	101.0	0.0	.	250	.	.	Atlas-SNP
CSF1R	1436	hgsc.bcm.edu	hg19	5	149459693	149459693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CSF1R	NM_005211	exon4	c.A514G	p.S172G	CCTGGCTCTGAAT	.	80.0	4.0	80.0	0.0	.	250	.	.	Atlas-SNP
SYNPO	11346	hgsc.bcm.edu	hg19	5	150029768	150029768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYNPO	NM_001166209	exon3	c.A2663G	p.D888G	GCGGTGACATCTC	.	142.0	6.0	140.0	0.0	.	147	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150946265	150946265	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAT2	NM_001447	exon1	c.A2228T	p.D743V	CCAGCATCAGGGT	.	65.0	6.0	121.0	0.0	.	465	.	.	Atlas-SNP
FAM71B	153745	hgsc.bcm.edu	hg19	5	156590132	156590132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM71B	NM_130899	exon2	c.A1144G	p.T382A	TGCTGGTCGTAAT	.	67.0	4.0	71.0	0.0	.	145	.	.	Atlas-SNP
FABP6	2172	hgsc.bcm.edu	hg19	5	159626128	159626128	+	Silent	SNP	G	G	T	rs146032989	bycluster;by1000genomes;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FABP6	NM_001130958	exon2	c.G15T	p.T5T	AGTGACGATGATG	.	45.0	4.0	73.0	0.0	.	37	.	G|1.000;A|0.000	Atlas-SNP
GABRA1	2554	hgsc.bcm.edu	hg19	5	161292754	161292754	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GABRA1	NM_001127643	exon5	c.T215A	p.I72N	CTGATATCTTCGT	.	207.0	12.0	225.0	0.0	.	132	.	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	hg19	5	167489113	167489113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001122679	exon7	c.T1358C	p.V453A	CAGAAGTTGGTCG	.	89.0	4.0	91.0	0.0	.	.	.	.	Atlas-SNP
WWC1	23286	hgsc.bcm.edu	hg19	5	167835651	167835651	+	Nonsense_Mutation	SNP	C	C	A	rs377343643	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WWC1	NM_015238	exon7	c.C860A	p.S287X	ACATCTCGGGAAG	.	66.0	4.0	66.0	0.0	.	98	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169508908	169508908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DOCK2	NM_004946	exon51	c.A5350G	p.S1784G	CGCCTCAGCCAGA	.	95.0	30.0	126.0	0.0	.	389	.	.	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	hg19	5	176721162	176721162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NSD1	NM_022455	exon23	c.T6793C	p.S2265P	TCGCTCTCCAAAA	.	54.0	4.0	92.0	0.0	.	416	.	.	Atlas-SNP
PDLIM7	9260	hgsc.bcm.edu	hg19	5	176916442	176916442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PDLIM7	NM_005451	exon9	c.G821A	p.S274N	TTGTTGCTGCCCC	.	125.0	5.0	149.0	0.0	.	32	.	.	Atlas-SNP
TBC1D9B	23061	hgsc.bcm.edu	hg19	5	179298474	179298474	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D9B	NM_198868	exon15	c.C2472T	p.Y824Y	CACCATGTAAAGG	.	112.0	18.0	159.0	0.0	.	157	.	.	Atlas-SNP
OR2V1	26693	hgsc.bcm.edu	hg19	5	180552260	180552260	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR2V1	NM_001258283	exon1	c.C45A	p.L15L	GCCCAAGAGGAAG	.	89.0	4.0	92.0	0.0	.	20	.	.	Atlas-SNP
TRIM41	90933	hgsc.bcm.edu	hg19	5	180662368	180662368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRIM41	NM_201627	exon8	c.A1546G	p.S516G	GAATTTAGCTTCA	.	254.0	55.0	264.0	0.0	.	96	.	.	Atlas-SNP
CAGE1	285782	hgsc.bcm.edu	hg19	6	7379230	7379230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CAGE1	NM_001170693	exon4	c.A307G	p.T103A	CATTCGTTGAGTA	.	54.0	4.0	79.0	0.0	.	165	.	.	Atlas-SNP
TFAP2A	7020	hgsc.bcm.edu	hg19	6	10410201	10410201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TFAP2A	NM_003220	exon2	c.A413G	p.H138R	AGCGCGTGTGGGC	.	89.0	4.0	153.0	0.0	.	129	.	.	Atlas-SNP
RANBP9	10048	hgsc.bcm.edu	hg19	6	13642722	13642722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RANBP9	NM_005493	exon7	c.A1214G	p.K405R	CTATTCTTAATGG	.	64.0	4.0	76.0	0.0	.	42	.	.	Atlas-SNP
MYLIP	29116	hgsc.bcm.edu	hg19	6	16144041	16144041	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYLIP	NM_013262	exon5	c.C774T	p.T258T	CAGCACCAGGGCG	.	90.0	4.0	132.0	0.0	.	44	.	.	Atlas-SNP
KIF13A	63971	hgsc.bcm.edu	hg19	6	17794586	17794586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIF13A	NM_001105567	exon25	c.A3116G	p.Q1039R	GAATGCTGCACAG	.	95.0	4.0	110.0	0.0	.	276	.	.	Atlas-SNP
MRS2	57380	hgsc.bcm.edu	hg19	6	24418379	24418379	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MRS2	NM_020662	exon8	c.T904C	p.L302L	TACCGATTGGCTG	.	139.0	6.0	234.0	0.0	.	31	.	.	Atlas-SNP
HIST1H3A	8350	hgsc.bcm.edu	hg19	6	26020867	26020867	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HIST1H3A	NM_003529	exon1	c.C150A	p.R50R	TCTGCGCGAGATC	.	73.0	4.0	96.0	0.0	.	14	.	.	Atlas-SNP
BTN3A1	11119	hgsc.bcm.edu	hg19	6	26413697	26413697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BTN3A1	NM_007048	exon10	c.A1319C	p.K440T	GGAATAAGTATCG	.	60.0	15.0	109.0	0.0	.	80	.	.	Atlas-SNP
BTN3A1	11119	hgsc.bcm.edu	hg19	6	26413707	26413707	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BTN3A1	NM_007048	exon10	c.T1329C	p.T443T	TCGGACTCTAACT	.	65.0	4.0	132.0	0.0	.	80	.	.	Atlas-SNP
ZNF165	7718	hgsc.bcm.edu	hg19	6	28057118	28057118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF165	NM_003447	exon4	c.T1328A	p.L443H	CACATCTTATTCG	.	89.0	4.0	139.0	0.0	.	48	.	.	Atlas-SNP
SCAND3	114821	hgsc.bcm.edu	hg19	6	28540398	28540398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SCAND3	NM_052923	exon4	c.T3268C	p.S1090P	GTTGGGACCACAT	.	123.0	5.0	126.0	0.0	.	156	.	.	Atlas-SNP
OR2B3	442184	hgsc.bcm.edu	hg19	6	29054341	29054341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR2B3	NM_001005226	exon1	c.A685G	p.R229G	CTGACCTGATTTT	.	84.0	4.0	107.0	0.0	.	44	.	.	Atlas-SNP
SFTA2	389376	hgsc.bcm.edu	hg19	6	30899268	30899268	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SFTA2	NM_205854	exon3	c.A234G	p.T78T	CTGTCATGTGTTG	.	79.0	4.0	137.0	0.0	.	6	.	.	Atlas-SNP
CDSN	1041	hgsc.bcm.edu	hg19	6	31084099	31084099	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CDSN	NM_001264	exon2	c.C1293T	p.F431F	GCTGCTGAAGGAG	.	82.0	5.0	132.0	0.0	.	48	.	.	Atlas-SNP
CCHCR1	54535	hgsc.bcm.edu	hg19	6	31125311	31125311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CCHCR1	NM_001105563	exon1	c.A67G	p.M23V	AGGCCATGACTCT	.	97.0	4.0	133.0	0.0	.	68	.	.	Atlas-SNP
EHMT2	10919	hgsc.bcm.edu	hg19	6	31848833	31848833	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EHMT2	NM_006709	exon26	c.T3234C	p.D1078D	TCTCACATCAGCC	.	90.0	4.0	118.0	0.0	.	45	.	.	Atlas-SNP
RXRB	6257	hgsc.bcm.edu	hg19	6	33162736	33162736	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RXRB	NM_001270401	exon9	c.T1452C	p.P484P	CTGCTCAGGGTAC	.	171.0	8.0	294.0	0.0	.	34	.	.	Atlas-SNP
MAPK14	1432	hgsc.bcm.edu	hg19	6	36027094	36027094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAPK14	NM_139012	exon3	c.C275T	p.P92L	TTACACCTGCAAG	.	86.0	4.0	162.0	0.0	.	75	.	.	Atlas-SNP
PXT1	222659	hgsc.bcm.edu	hg19	6	36359651	36359651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	PXT1,NS,malignant_melanoma,0,1	PXT1	NM_152990	exon5	c.G301A	p.D101N	GAAGATCCTATTT	.	35.0	2.0	57.0	1.0	.	6	.	.	Atlas-SNP
MTCH1	23787	hgsc.bcm.edu	hg19	6	36946282	36946282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTCH1	NM_014341	exon3	c.A512G	p.K171R	CTCACCTTCTTCA	.	100.0	4.0	123.0	0.0	.	24	.	.	Atlas-SNP
LRFN2	57497	hgsc.bcm.edu	hg19	6	40360061	40360061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRFN2	NM_020737	exon3	c.A1991G	p.D664G	TTGAGGTCCAGGG	.	102.0	5.0	185.0	0.0	.	133	.	.	Atlas-SNP
TBCC	6903	hgsc.bcm.edu	hg19	6	42713354	42713354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBCC	NM_003192	exon1	c.A458G	p.D153G	GCCGCGTCTACTT	.	94.0	4.0	91.0	0.0	.	31	.	.	Atlas-SNP
DLK2	65989	hgsc.bcm.edu	hg19	6	43419708	43419708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DLK2	NM_023932	exon5	c.A386G	p.E129G	TTGCGCTCGCAGT	.	49.0	4.0	83.0	0.0	.	22	.	.	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	hg19	6	46657993	46657993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TDRD6	NM_001168359	exon1	c.G2128A	p.A710T	CAGAAAGCCAAGA	.	197.0	60.0	272.0	0.0	.	205	.	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	72968750	72968750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RIMS1	NM_014989	exon18	c.T2989C	p.S997P	GATGCCTCCCGAA	.	80.0	4.0	138.0	0.0	.	278	.	.	Atlas-SNP
C6orf165	154313	hgsc.bcm.edu	hg19	6	88123541	88123541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	C6orf165_ENST00000369562,caecum,carcinoma,0,2	C6orf165	NM_001031743	exon4	c.G206T	p.R69L	TGACTCGGCTATT	.	102.0	5.0	135.0	1.0	.	116	.	.	Atlas-SNP
CNR1	1268	hgsc.bcm.edu	hg19	6	88854629	88854629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CNR1	NM_001160258	exon4	c.T365C	p.L122P	AGGGACAGGACTG	.	73.0	5.0	107.0	0.0	.	91	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90438701	90438701	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MDN1	NM_014611	exon36	c.A5298G	p.L1766L	CTTTGCTAATGCT	.	99.0	4.0	170.0	0.0	.	478	.	.	Atlas-SNP
NR2E1	7101	hgsc.bcm.edu	hg19	6	108497813	108497813	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	NR2E1,NS,carcinoma,+1,1	NR2E1	NM_003269	exon4	c.G366A	p.S122S	TCCCTCGGCGGCG	.	52.0	3.0	91.0	0.0	.	57	.	.	Atlas-SNP
AKD1	221264	hgsc.bcm.edu	hg19	6	109837261	109837261	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKD1	NM_001145128	exon31	c.T3864C	p.Y1288Y	TATCAAATACCTC	.	95.0	4.0	184.0	0.0	.	223	.	.	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	hg19	6	111697828	111697828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	REV3L	NM_002912	exon13	c.T1730C	p.F577S	CACTGAAAGGTAA	.	67.0	4.0	96.0	0.0	.	386	.	.	Atlas-SNP
DSE	29940	hgsc.bcm.edu	hg19	6	116757735	116757735	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DSE	NM_001080976	exon6	c.G2104T	p.E702X	ACAGGTGAGGCCA	.	60.0	4.0	56.0	0.0	.	98	.	.	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	hg19	6	117114093	117114093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPRC6A	NM_148963	exon6	c.A1993G	p.M665V	CAAACATTGTCTG	.	90.0	5.0	159.0	0.0	.	152	.	.	Atlas-SNP
RFX6	222546	hgsc.bcm.edu	hg19	6	117198575	117198575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RFX6	NM_173560	exon1	c.A137G	p.Y46C	CAGTGTACCTGGC	.	79.0	4.0	147.0	0.0	.	141	.	.	Atlas-SNP
MCM9	254394	hgsc.bcm.edu	hg19	6	119147383	119147383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MCM9	NM_017696	exon11	c.A1888G	p.R630G	ACTGTCTCTGGTA	.	105.0	5.0	150.0	0.0	.	73	.	.	Atlas-SNP
RNF146	81847	hgsc.bcm.edu	hg19	6	127608496	127608496	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNF146	NM_001242850	exon3	c.T738C	p.S246S	AGACTCTTTTGCT	.	91.0	4.0	142.0	0.0	.	31	.	.	Atlas-SNP
ARHGAP18	93663	hgsc.bcm.edu	hg19	6	129937450	129937450	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARHGAP18	NM_033515	exon8	c.953-2A>G	.	AGAATCTGCAAGA	.	86.0	4.0	167.0	0.0	.	52	.	.	Atlas-SNP
TMEM200A	114801	hgsc.bcm.edu	hg19	6	130762627	130762627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM200A	NM_001258277	exon3	c.T1060C	p.S354P	GGGGAGTCGTTGT	.	148.0	6.0	191.0	0.0	.	108	.	.	Atlas-SNP
EYA4	2070	hgsc.bcm.edu	hg19	6	133767825	133767825	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	EYA4_ENST00000355167,right_lower_lobe,carcinoma,0,2	EYA4	NM_172105	exon4	c.T141C	p.T47T	TGATACTCCAGGT	.	93.0	4.0	115.0	0.0	.	196	.	.	Atlas-SNP
MYB	4602	hgsc.bcm.edu	hg19	6	135516923	135516923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYB	NM_001161659	exon9	c.G986A	p.S329N	GGCACAGCACCAC	.	77.0	4.0	120.0	0.0	.	137	.	.	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138655204	138655204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1244	NM_020340	exon33	c.T5221C	p.S1741P	GGCCCCTCTCCTG	.	70.0	4.0	115.0	0.0	.	236	.	.	Atlas-SNP
TXLNB	167838	hgsc.bcm.edu	hg19	6	139564133	139564133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TXLNB	NM_153235	exon10	c.A1585T	p.S529C	GAGAACTGCCTAT	.	174.0	47.0	267.0	0.0	.	96	.	.	Atlas-SNP
GPR126	57211	hgsc.bcm.edu	hg19	6	142764487	142764487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR126	NM_020455	exon26	c.G3634A	p.G1212R	TTCCATGGACAAG	.	82.0	4.0	105.0	0.0	.	192	.	.	Atlas-SNP
HIVEP2	3097	hgsc.bcm.edu	hg19	6	143094773	143094773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HIVEP2	NM_006734	exon5	c.A1103G	p.K368R	GCAAGTTTCTGTT	.	115.0	6.0	201.0	0.0	.	225	.	.	Atlas-SNP
UTRN	7402	hgsc.bcm.edu	hg19	6	144801076	144801076	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UTRN	NM_007124	exon25	c.C3465T	p.Y1155Y	TGAGTACAAGTCA	.	97.0	4.0	129.0	0.0	.	327	.	.	Atlas-SNP
GRM1	2911	hgsc.bcm.edu	hg19	6	146755356	146755356	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GRM1	NM_000838	exon9	c.C3009T	p.F1003F	CCTCTTCCTGGCC	.	83.0	4.0	148.0	0.0	.	419	.	.	Atlas-SNP
C6orf211	79624	hgsc.bcm.edu	hg19	6	151789989	151789989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C6orf211	NM_024573	exon5	c.A1070G	p.Q357R	AACTACAGAAGGC	.	79.0	4.0	130.0	0.0	.	30	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152660387	152660387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYNE1	NM_182961	exon75	c.A12340G	p.T4114A	GCTCTGTTTGTTG	.	83.0	4.0	136.0	0.0	.	3227	.	.	Atlas-SNP
CNKSR3	154043	hgsc.bcm.edu	hg19	6	154762454	154762454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CNKSR3	NM_173515	exon4	c.G479A	p.C160Y	TCCAAGCAAAGCT	.	87.0	4.0	123.0	0.0	.	56	.	.	Atlas-SNP
ACAT2	39	hgsc.bcm.edu	hg19	6	160197213	160197213	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACAT2	NM_005891	exon6	c.T666C	p.P222P	GTTTCCTCGCCAT	.	109.0	7.0	160.0	0.0	.	32	.	.	Atlas-SNP
ACAT2	39	hgsc.bcm.edu	hg19	6	160197291	160197291	+	Silent	SNP	A	A	G	rs371174941	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACAT2	NM_005891	exon6	c.A744G	p.P248P	CACCCCAGCCAAT	.	98.0	4.0	137.0	0.0	.	32	.	.	Atlas-SNP
PDE10A	10846	hgsc.bcm.edu	hg19	6	165801824	165801824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PDE10A	NM_001130690	exon17	c.A1775G	p.E592G	TGCTGCTCCATGG	.	89.0	5.0	119.0	0.0	.	154	.	.	Atlas-SNP
T	6862	hgsc.bcm.edu	hg19	6	166579280	166579280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	T	NM_003181	exon4	c.A520G	p.R174G	CAACTCTCACTAT	.	99.0	6.0	157.0	0.0	.	77	.	.	Atlas-SNP
RPS6KA2	6196	hgsc.bcm.edu	hg19	6	166952273	166952273	+	Splice_Site	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	RPS6KA2_ENST00000503859,NS,carcinoma,0,2	RPS6KA2	NM_021135	exon3	c.100-1G>T	.	TTCTTCCTGCAAG	.	40.0	3.0	51.0	0.0	.	212	.	.	Atlas-SNP
MLLT4	4301	hgsc.bcm.edu	hg19	6	168307929	168307929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	MLLT4_ENST00000392108,NS,carcinoma,0,3	MLLT4	NM_001040000	exon13	c.A1729G	p.R577G	ATGATCAGAGTAG	.	140.0	6.0	209.0	0.0	.	351	.	.	Atlas-SNP
FAM120B	84498	hgsc.bcm.edu	hg19	6	170657249	170657249	+	Silent	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM120B	NM_032448	exon5	c.T2028A	p.P676P	AACGCCTAGTTTG	.	46.0	16.0	62.0	0.0	.	108	.	.	Atlas-SNP
INTS1	26173	hgsc.bcm.edu	hg19	7	1534513	1534513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INTS1	NM_001080453	exon14	c.T1849C	p.F617L	CTGTGAACAGCAC	.	85.0	4.0	116.0	0.0	.	145	.	.	Atlas-SNP
HDAC9	9734	hgsc.bcm.edu	hg19	7	18687567	18687567	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HDAC9	NM_178425	exon9	c.C1195T	p.L399L	GCTCTCCTGCAGC	.	57.0	18.0	83.0	0.0	.	560	.	.	Atlas-SNP
CDCA7L	55536	hgsc.bcm.edu	hg19	7	21946043	21946043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CDCA7L	NM_018719	exon6	c.A785G	p.E262G	TGTCCCTCCGAGA	.	66.0	4.0	78.0	0.0	.	56	.	.	Atlas-SNP
FAM188B	84182	hgsc.bcm.edu	hg19	7	30921896	30921896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM188B	NM_032222	exon16	c.A2072G	p.D691G	TGCGTGACTGGAG	.	142.0	6.0	192.0	0.0	.	62	.	.	Atlas-SNP
AVL9	23080	hgsc.bcm.edu	hg19	7	32598745	32598745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AVL9	NM_015060	exon10	c.A884G	p.E295G	CTGAGGAGCCTTT	.	85.0	5.0	90.0	0.0	.	66	.	.	Atlas-SNP
EEPD1	80820	hgsc.bcm.edu	hg19	7	36194099	36194099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EEPD1	NM_030636	exon2	c.G166A	p.V56M	CCTGGGGTGACGC	.	95.0	4.0	103.0	0.0	.	47	.	.	Atlas-SNP
AMPH	273	hgsc.bcm.edu	hg19	7	38457492	38457492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AMPH	NM_001635	exon17	c.T1331C	p.V444A	GGTGTGACAGCAG	.	168.0	8.0	245.0	0.0	.	157	.	.	Atlas-SNP
POU6F2	11281	hgsc.bcm.edu	hg19	7	39500146	39500146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POU6F2	NM_007252	exon10	c.A1403G	p.N468S	CCACAGATCCTCA	.	161.0	8.0	234.0	0.0	.	117	.	.	Atlas-SNP
NPC1L1	29881	hgsc.bcm.edu	hg19	7	44555532	44555532	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NPC1L1	NM_013389	exon19	c.T3747C	p.P1249P	GATGCCAGGCAGG	.	75.0	4.0	111.0	0.0	.	141	.	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	hg19	7	51111115	51111115	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COBL	NM_015198	exon8	c.G1371A	p.L457L	CTCCCACAAGGGG	.	87.0	4.0	167.0	0.0	.	167	.	.	Atlas-SNP
FZD9	8326	hgsc.bcm.edu	hg19	7	72849391	72849391	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FZD9	NM_003508	exon1	c.G1054T	p.E352X	GCCATCGAGGCCC	.	84.0	4.0	126.0	0.0	.	51	.	.	Atlas-SNP
WBSCR22	114049	hgsc.bcm.edu	hg19	7	73108372	73108372	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WBSCR22	NM_001202560	exon10	c.C693A	p.T231T	GTTCACCAATGAG	.	52.0	4.0	88.0	0.0	.	27	.	.	Atlas-SNP
HGF	3082	hgsc.bcm.edu	hg19	7	81335733	81335733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	HGF,colon,carcinoma,+2,1	HGF	NM_000601	exon15	c.G1627A	p.D543N	CATAATCTTTCAA	.	80.0	4.0	122.0	0.0	.	171	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82390784	82390784	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	PCLO_ENST00000333891,NS,carcinoma,0,2	PCLO	NM_033026	exon23	c.C15033A	p.I5011I	AATCTTGATTTCT	.	73.0	3.0	94.0	0.0	.	1506	.	.	Atlas-SNP
SEMA3A	10371	hgsc.bcm.edu	hg19	7	83640613	83640613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SEMA3A	NM_006080	exon8	c.A811G	p.N271D	AGTCATTCTGAAA	.	63.0	4.0	90.0	0.0	.	121	.	.	Atlas-SNP
KIAA1324L	222223	hgsc.bcm.edu	hg19	7	86574222	86574222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1324L	NM_001142749	exon4	c.A647G	p.E216G	AAGAACTCAAAGA	.	134.0	6.0	246.0	0.0	.	225	.	.	Atlas-SNP
HEPACAM2	253012	hgsc.bcm.edu	hg19	7	92825166	92825166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEPACAM2	NM_001039372	exon8	c.T1250C	p.F417S	TCTGGAAAAGCAA	.	89.0	5.0	113.0	0.0	.	132	.	.	Atlas-SNP
ACN9	57001	hgsc.bcm.edu	hg19	7	96810376	96810376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACN9	NM_020186	exon2	c.C227A	p.T76N	ATTCAACTGGAAA	.	386.0	131.0	649.0	0.0	.	19	.	.	Atlas-SNP
ZSCAN25	221785	hgsc.bcm.edu	hg19	7	99227239	99227239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_145115	exon8	c.A1231G	p.T411A	TGGAAAACCTTCA	.	55.0	4.0	73.0	0.0	.	.	.	.	Atlas-SNP
ZSCAN21	7589	hgsc.bcm.edu	hg19	7	99661625	99661625	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZSCAN21	NM_145914	exon4	c.A807G	p.K269K	TACTAAACCTACC	.	100.0	4.0	146.0	0.0	.	29	.	.	Atlas-SNP
AGFG2	3268	hgsc.bcm.edu	hg19	7	100161882	100161882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AGFG2	NM_006076	exon11	c.A1342G	p.R448G	GGGCAGAGGCCAC	.	81.0	4.0	120.0	0.0	.	44	.	.	Atlas-SNP
SERPINE1	5054	hgsc.bcm.edu	hg19	7	100773929	100773929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SERPINE1	NM_000602	exon3	c.A499G	p.T167A	ACACACACAAAAG	.	91.0	4.0	153.0	0.0	.	60	.	.	Atlas-SNP
LRWD1	222229	hgsc.bcm.edu	hg19	7	102110227	102110227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRWD1	NM_152892	exon11	c.G1340A	p.R447H	CCCTGCGCCTCTG	.	78.0	4.0	119.0	0.0	.	41	.	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103180823	103180823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RELN	NM_173054	exon44	c.T6751C	p.S2251P	TGAGAGAATACTG	.	47.0	4.0	83.0	0.0	.	593	.	.	Atlas-SNP
ORC5	5001	hgsc.bcm.edu	hg19	7	103808859	103808859	+	Silent	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ORC5	NM_181747	exon9	c.T939A	p.T313T	AACTTTAGTATCT	.	74.0	4.0	102.0	0.0	.	48	.	.	Atlas-SNP
MLL5	55904	hgsc.bcm.edu	hg19	7	104681461	104681461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MLL5	NM_018682	exon2	c.C62T	p.A21V	TGGCTGCAGGTTC	.	72.0	4.0	112.0	0.0	.	173	.	.	Atlas-SNP
ATXN7L1	222255	hgsc.bcm.edu	hg19	7	105260739	105260739	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATXN7L1	NM_020725	exon9	c.A1425G	p.G475G	CCCTCGTCCCATG	.	86.0	5.0	189.0	0.0	.	56	.	.	Atlas-SNP
LRRN3	54674	hgsc.bcm.edu	hg19	7	110764148	110764148	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRN3	NM_018334	exon2	c.T1320C	p.V440V	CTATGTTTCCTTT	.	50.0	4.0	82.0	0.0	.	132	.	.	Atlas-SNP
AASS	10157	hgsc.bcm.edu	hg19	7	121721604	121721604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AASS	NM_005763	exon20	c.A2230G	p.N744D	CTCTGTTTATAAG	.	67.0	4.0	110.0	0.0	.	123	.	.	Atlas-SNP
KLHDC10	23008	hgsc.bcm.edu	hg19	7	129761948	129761948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHDC10	NM_014997	exon5	c.A685G	p.I229V	GGCTATATTTACA	.	184.0	67.0	232.0	0.0	.	36	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	131865424	131865424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLXNA4	NM_020911	exon19	c.A3560G	p.E1187G	GGCTTCTCCCCAA	.	87.0	5.0	132.0	0.0	.	873	.	.	Atlas-SNP
EXOC4	60412	hgsc.bcm.edu	hg19	7	133692446	133692446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EXOC4	NM_021807	exon17	c.T2545C	p.S849P	CTGATCTCCTGCA	.	81.0	4.0	129.0	0.0	.	118	.	.	Atlas-SNP
DGKI	9162	hgsc.bcm.edu	hg19	7	137304620	137304620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DGKI	NM_004717	exon8	c.G943A	p.A315T	CAGCAGCATGAGC	.	80.0	5.0	126.0	0.0	.	335	.	.	Atlas-SNP
ZC3HAV1	56829	hgsc.bcm.edu	hg19	7	138749685	138749685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZC3HAV1	NM_024625	exon8	c.T1933C	p.C645R	TCGGACAGGATTG	.	93.0	4.0	154.0	0.0	.	75	.	.	Atlas-SNP
TPK1	27010	hgsc.bcm.edu	hg19	7	144288520	144288520	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TPK1	NM_022445	exon7	c.A497T	p.Q166L	ACTGGTTGGAGCA	.	83.0	4.0	134.0	0.0	.	41	.	.	Atlas-SNP
SLC4A2	6522	hgsc.bcm.edu	hg19	7	150761997	150761997	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC4A2	NM_003040	exon5	c.T522C	p.P174P	TTCCCCTGCACCA	.	75.0	4.0	104.0	0.0	.	98	.	.	Atlas-SNP
EN2	2020	hgsc.bcm.edu	hg19	7	155255188	155255188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EN2	NM_001427	exon2	c.A808G	p.T270A	TACCTGACGGAGC	.	73.0	4.0	138.0	0.0	.	14	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2824171	2824171	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CSMD1	NM_033225	exon58	c.A9021G	p.E3007E	GTAGCCTTCCCAG	.	63.0	4.0	138.0	0.0	.	1469	.	.	Atlas-SNP
CLDN23	137075	hgsc.bcm.edu	hg19	8	8560187	8560187	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CLDN23	NM_194284	exon1	c.G279T	p.L93L	GGTCCTGGGGCTT	.	17.0	6.0	17.0	0.0	.	5	.	.	Atlas-SNP
LONRF1	91694	hgsc.bcm.edu	hg19	8	12586494	12586494	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LONRF1	NM_152271	exon10	c.T1926C	p.V642V	TCCTCCAACTGTA	.	122.0	6.0	311.0	0.0	.	45	.	.	Atlas-SNP
FGF20	26281	hgsc.bcm.edu	hg19	8	16850684	16850684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FGF20	NM_019851	exon3	c.G533A	p.G178D	CTGGCGCCATCTC	.	80.0	4.0	180.0	0.0	.	16	.	.	Atlas-SNP
MTMR7	9108	hgsc.bcm.edu	hg19	8	17163419	17163419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTMR7	NM_004686	exon11	c.A1199G	p.D400G	AACTGGTCAATAA	.	91.0	4.0	173.0	0.0	.	75	.	.	Atlas-SNP
MTUS1	57509	hgsc.bcm.edu	hg19	8	17541870	17541870	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTUS1	NM_001001924	exon7	c.A2805G	p.A935A	TGTCAATGCCTCA	.	79.0	4.0	169.0	0.0	.	144	.	.	Atlas-SNP
PCM1	5108	hgsc.bcm.edu	hg19	8	17822267	17822267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCM1	NM_006197	exon18	c.A2845G	p.T949A	AAGGAAACTAAAA	.	94.0	4.0	183.0	0.0	.	120	.	.	Atlas-SNP
GFRA2	2675	hgsc.bcm.edu	hg19	8	21562513	21562513	+	Silent	SNP	G	G	T	rs375828964	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GFRA2	NM_001495	exon6	c.C1029A	p.T343T	GTTCTCGGTGAAG	.	94.0	4.0	160.0	0.0	.	23	.	.	Atlas-SNP
FAM160B2	64760	hgsc.bcm.edu	hg19	8	21955610	21955610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM160B2	NM_022749	exon6	c.G557T	p.C186F	AAGCATGCGGAGA	.	77.0	5.0	206.0	0.0	.	35	.	.	Atlas-SNP
HR	55806	hgsc.bcm.edu	hg19	8	21986470	21986470	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HR	NM_018411	exon2	c.A214C	p.M72L	GGAGCATGTCCTT	.	60.0	20.0	83.0	0.0	.	71	.	.	Atlas-SNP
CDCA2	157313	hgsc.bcm.edu	hg19	8	25327485	25327485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CDCA2	NM_152562	exon7	c.A809G	p.E270G	TCACAGAGACTTC	.	82.0	4.0	180.0	0.0	.	78	.	.	Atlas-SNP
ELP3	55140	hgsc.bcm.edu	hg19	8	27964302	27964302	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ELP3	NM_018091	exon4	c.329+2T>A	.	TGTGTGTAAGTAT	.	111.0	5.0	251.0	0.0	.	36	.	.	Atlas-SNP
TTI2	80185	hgsc.bcm.edu	hg19	8	33357923	33357923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001265581	exon7	c.T1345C	p.S449P	TAACAGACTCAGG	.	53.0	5.0	93.0	0.0	.	.	.	.	Atlas-SNP
BAG4	9530	hgsc.bcm.edu	hg19	8	38067825	38067825	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAG4	NM_004874	exon5	c.A1188G	p.E396E	ACAAGAAGTAGAA	.	93.0	4.0	236.0	0.0	.	32	.	.	Atlas-SNP
IDO1	3620	hgsc.bcm.edu	hg19	8	39781035	39781035	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IDO1	NM_002164	exon7	c.T585C	p.T195T	GGACACTTTGCTA	.	92.0	4.0	152.0	0.0	.	43	.	.	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	hg19	8	41906387	41906387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001099412	exon3	c.T109C	p.S37P	ATGAAGACACAGC	.	92.0	4.0	219.0	0.0	.	.	.	.	Atlas-SNP
SNTG1	54212	hgsc.bcm.edu	hg19	8	51617305	51617305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SNTG1	NM_018967	exon16	c.G1184A	p.R395Q	TAGAACGGATACA	.	88.0	4.0	74.0	0.0	.	304	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52321593	52321593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	PXDNL_ENST00000356297,colon,carcinoma,-1,1	PXDNL	NM_144651	exon17	c.G2591A	p.R864H	CTGGAGCGCGCGA	.	65.0	3.0	45.0	0.0	.	414	.	.	Atlas-SNP
NSMAF	8439	hgsc.bcm.edu	hg19	8	59520364	59520364	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NSMAF	NM_001144772	exon11	c.C816A	p.R272R	GATGCGGCGGACA	.	122.0	5.0	88.0	0.0	.	156	.	.	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	hg19	8	61765123	61765123	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CHD7	NM_017780	exon30	c.T5961C	p.P1987P	TGACCCTGTGAAA	.	102.0	5.0	92.0	0.0	.	534	.	.	Atlas-SNP
NKAIN3	286183	hgsc.bcm.edu	hg19	8	63492103	63492103	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NKAIN3	NM_173688	exon2	c.A60G	p.S20S	GGTCTCAGCATTA	.	99.0	5.0	112.0	0.0	.	32	.	.	Atlas-SNP
MYBL1	4603	hgsc.bcm.edu	hg19	8	67492490	67492490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYBL1	NM_001080416	exon9	c.A979G	p.N327D	GCTGATTTTCATC	.	100.0	4.0	88.0	0.0	.	73	.	.	Atlas-SNP
NCOA2	10499	hgsc.bcm.edu	hg19	8	71074948	71074948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NCOA2	NM_006540	exon9	c.A974G	p.E325G	TTACCTTCATGAT	.	88.0	4.0	95.0	0.0	.	147	.	.	Atlas-SNP
LRRCC1	85444	hgsc.bcm.edu	hg19	8	86039024	86039024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRCC1	NM_033402	exon9	c.C1373T	p.A458V	AACATGCAAATGA	.	100.0	4.0	92.0	0.0	.	212	.	.	Atlas-SNP
OSGIN2	734	hgsc.bcm.edu	hg19	8	90921887	90921887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OSGIN2	NM_001126111	exon2	c.C137T	p.P46L	CGATGCCATTAGT	.	121.0	6.0	141.0	0.0	.	73	.	.	Atlas-SNP
GEM	2669	hgsc.bcm.edu	hg19	8	95262794	95262794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GEM	NM_181702	exon5	c.T635C	p.V212A	TCAAACACCACTG	.	89.0	4.0	76.0	0.0	.	40	.	.	Atlas-SNP
RAD54B	25788	hgsc.bcm.edu	hg19	8	95470643	95470643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RAD54B	NM_001205262	exon3	c.T157C	p.F53L	GGAGAAAGGTGTT	.	79.0	5.0	92.0	0.0	.	88	.	.	Atlas-SNP
STK3	6788	hgsc.bcm.edu	hg19	8	99779493	99779493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STK3	NM_001256312	exon5	c.T298C	p.S100P	TTATGGAAATTTC	.	84.0	4.0	85.0	0.0	.	47	.	.	Atlas-SNP
MTSS1	9788	hgsc.bcm.edu	hg19	8	125580779	125580779	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTSS1	NM_014751	exon8	c.461-2A>G	.	TCTCCCTGCAAAA	.	94.0	6.0	89.0	0.0	.	79	.	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	134125745	134125745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TG	NM_003235	exon44	c.A7652G	p.D2551G	GCGAGGACTCAGA	.	100.0	4.0	87.0	0.0	.	416	.	.	Atlas-SNP
ZFAT	57623	hgsc.bcm.edu	hg19	8	135545138	135545138	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZFAT	NM_020863	exon12	c.T3054C	p.P1018P	CTCATTAGGGTGC	.	59.0	4.0	80.0	0.0	.	265	.	.	Atlas-SNP
MROH6	642475	hgsc.bcm.edu	hg19	8	144652226	144652226	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001100878	exon7	c.G1053T	p.V351V	ATGTGCCACCATA	.	82.0	5.0	79.0	0.0	.	.	.	.	Atlas-SNP
ZNF707	286075	hgsc.bcm.edu	hg19	8	144773301	144773301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF707	NM_001100598	exon4	c.T74C	p.L25P	CGTGTCTGGAACC	.	143.0	7.0	160.0	0.0	.	21	.	.	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	hg19	8	144991777	144991777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLEC	NM_201380	exon32	c.T12623C	p.L4208P	TCGAAGAGGCCGC	.	144.0	6.0	127.0	0.0	.	1144	.	.	Atlas-SNP
GPT	2875	hgsc.bcm.edu	hg19	8	145731975	145731975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPT	NM_005309	exon9	c.T1223C	p.V408A	ACCCAGTGCAGGG	.	89.0	4.0	72.0	0.0	.	31	.	.	Atlas-SNP
COMMD5	28991	hgsc.bcm.edu	hg19	8	146076649	146076649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COMMD5	NM_001081004	exon2	c.G75T	p.L25F	GGCCCCCAAGAAA	.	69.0	11.0	91.0	0.0	.	18	.	.	Atlas-SNP
GLIS3	169792	hgsc.bcm.edu	hg19	9	4118024	4118024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GLIS3	NM_001042413	exon4	c.C1454T	p.A485V	AGGGTGGCCTGGG	.	31.0	4.0	46.0	0.0	.	152	.	.	Atlas-SNP
KIAA2026	158358	hgsc.bcm.edu	hg19	9	5921962	5921962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA2026	NM_001017969	exon8	c.T4034C	p.L1345P	GGTGAAAGACTAG	.	92.0	4.0	116.0	0.0	.	231	.	.	Atlas-SNP
CCDC171	203238	hgsc.bcm.edu	hg19	9	15784674	15784674	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_173550	exon21	c.T3249C	p.T1083T	CCAAACTCTTGGA	.	82.0	4.0	149.0	0.0	.	.	.	.	Atlas-SNP
ADAMTSL1	92949	hgsc.bcm.edu	hg19	9	18622358	18622358	+	Missense_Mutation	SNP	G	G	A	rs200455820	bycluster	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADAMTSL1	NM_052866	exon5	c.G592A	p.A198T	CTCTCCGCAACCA	.	100.0	4.0	154.0	0.0	.	306	.	.	Atlas-SNP
ADAMTSL1	92949	hgsc.bcm.edu	hg19	9	18681884	18681884	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADAMTSL1	NM_052866	exon12	c.A1416G	p.G472G	CACAGGAGGCTGT	.	86.0	4.0	192.0	0.0	.	306	.	.	Atlas-SNP
ACO1	48	hgsc.bcm.edu	hg19	9	32419134	32419134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACO1	NM_002197	exon7	c.C757A	p.P253T	CCCCACCCTCTGG	.	95.0	4.0	157.0	0.0	.	149	.	.	Atlas-SNP
TOPORS	10210	hgsc.bcm.edu	hg19	9	32541494	32541494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TOPORS	NM_005802	exon3	c.A3029G	p.N1010S	GGCTGGTTCTCCA	.	120.0	5.0	173.0	0.0	.	127	.	.	Atlas-SNP
IL11RA	3590	hgsc.bcm.edu	hg19	9	34659771	34659771	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IL11RA	NM_001142784	exon9	c.C826T	p.L276L	GCTGGACTGGAGG	.	77.0	4.0	134.0	0.0	.	34	.	.	Atlas-SNP
IL11RA	3590	hgsc.bcm.edu	hg19	9	34659894	34659894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IL11RA	NM_001142784	exon9	c.A949G	p.T317A	CCGAGCACTGGTG	.	51.0	4.0	94.0	0.0	.	34	.	.	Atlas-SNP
RECK	8434	hgsc.bcm.edu	hg19	9	36063817	36063817	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RECK	NM_021111	exon5	c.G297A	p.W99X	TGGCTGGGTTGGC	.	85.0	4.0	159.0	0.0	.	73	.	.	Atlas-SNP
DCAF10	79269	hgsc.bcm.edu	hg19	9	37860046	37860046	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DCAF10	NM_024345	exon6	c.A1167G	p.G389G	CTCAGGAGTTTCA	.	119.0	5.0	197.0	0.0	.	31	.	.	Atlas-SNP
TRPM3	80036	hgsc.bcm.edu	hg19	9	73399114	73399114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	TRPM3_ENST00000423814,colon,carcinoma,-1,4	TRPM3	NM_001007471	exon7	c.G1055A	p.R352Q	GTGTCTCGAAGGT	.	125.0	5.0	158.0	0.0	.	700	.	.	Atlas-SNP
FAM108B1	51104	hgsc.bcm.edu	hg19	9	74485072	74485072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM108B1	NM_016014	exon3	c.T574C	p.S192P	GAGGAGAATGAAG	.	94.0	4.0	184.0	0.0	.	24	.	.	Atlas-SNP
GDA	9615	hgsc.bcm.edu	hg19	9	74842881	74842881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GDA	NM_004293	exon9	c.A845G	p.Y282C	GCTGCTACCTCTC	.	65.0	4.0	104.0	0.0	.	113	.	.	Atlas-SNP
GAS1	2619	hgsc.bcm.edu	hg19	9	89561085	89561085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GAS1	NM_002048	exon1	c.C610T	p.R204C	CGGTGCGGCATTC	.	39.0	4.0	63.0	0.0	.	8	.	.	Atlas-SNP
IARS	3376	hgsc.bcm.edu	hg19	9	95012165	95012165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IARS	NM_013417	exon25	c.A2591G	p.K864R	AAAGACTTGATAT	.	78.0	4.0	144.0	0.0	.	74	.	.	Atlas-SNP
IPPK	64768	hgsc.bcm.edu	hg19	9	95411851	95411851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IPPK	NM_022755	exon5	c.C298A	p.R100S	CACAGCGAGACTC	.	67.0	4.0	98.0	0.0	.	34	.	.	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	hg19	9	96024258	96024258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WNK2	NM_006648	exon12	c.T3229C	p.S1077P	ACGGTGTCTGCCT	.	71.0	4.0	123.0	0.0	.	277	.	.	Atlas-SNP
HSD17B3	3293	hgsc.bcm.edu	hg19	9	99007625	99007625	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HSD17B3	NM_000197	exon9	c.606+2T>C	.	TCACTCACCTTGG	.	109.0	5.0	153.0	0.0	.	32	.	.	Atlas-SNP
SLC35D2	11046	hgsc.bcm.edu	hg19	9	99145784	99145784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC35D2	NM_007001	exon1	c.A133G	p.N45D	CCTTGTTGACAAG	.	26.0	4.0	43.0	0.0	.	20	.	.	Atlas-SNP
NCBP1	4686	hgsc.bcm.edu	hg19	9	100410502	100410502	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NCBP1	NM_002486	exon8	c.C894A	p.P298P	TGATCCCGAGGTA	.	54.0	4.0	104.0	0.0	.	64	.	.	Atlas-SNP
ALG2	85365	hgsc.bcm.edu	hg19	9	101980977	101980977	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	ALG2,NS,carcinoma,0,1	ALG2	NM_033087	exon2	c.G490T	p.E164X	TGTATTCCTCTAT	.	48.0	2.0	79.0	0.0	.	37	.	.	Atlas-SNP
ALG2	85365	hgsc.bcm.edu	hg19	9	101980978	101980978	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ALG2	NM_033087	exon2	c.G489A	p.E163E	GTATTCCTCTATC	.	47.0	4.0	79.0	0.0	.	37	.	.	Atlas-SNP
ZNF189	7743	hgsc.bcm.edu	hg19	9	104170939	104170939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF189	NM_003452	exon3	c.T889C	p.F297L	AAGAGCTTTAGTC	.	95.0	4.0	159.0	0.0	.	79	.	.	Atlas-SNP
ZNF189	7743	hgsc.bcm.edu	hg19	9	104171114	104171114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF189	NM_003452	exon3	c.G1064T	p.R355L	TCAGTCGGAGCTC	.	103.0	5.0	141.0	0.0	.	79	.	.	Atlas-SNP
CYLC2	1539	hgsc.bcm.edu	hg19	9	105767561	105767561	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYLC2	NM_001340	exon5	c.T648C	p.D216D	GAAAGATAGCAAA	.	724.0	183.0	1067.0	0.0	.	109	.	.	Atlas-SNP
ACTL7A	10881	hgsc.bcm.edu	hg19	9	111625693	111625693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACTL7A	NM_006687	exon1	c.G1091T	p.S364I	GGGGCAGCACGAT	.	75.0	4.0	123.0	0.0	.	34	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113169313	113169313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SVEP1	NM_153366	exon38	c.A8567G	p.E2856G	GTGTATTCAATCT	.	78.0	4.0	106.0	0.0	.	326	.	.	Atlas-SNP
OR2K2	26248	hgsc.bcm.edu	hg19	9	114090233	114090233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR2K2	NM_205859	exon1	c.A481G	p.S161G	CAAAACTGGTTTC	.	54.0	4.0	58.0	0.0	.	77	.	.	Atlas-SNP
KIAA1958	158405	hgsc.bcm.edu	hg19	9	115421704	115421704	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1958	NM_133465	exon4	c.C1506A	p.T502T	CAGCACCTTCAGC	.	73.0	4.0	82.0	0.0	.	52	.	.	Atlas-SNP
FKBP15	23307	hgsc.bcm.edu	hg19	9	115932080	115932080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FKBP15	NM_015258	exon26	c.C2909A	p.A970E	AGGGGTGCTTGAG	.	93.0	4.0	99.0	0.0	.	128	.	.	Atlas-SNP
POLE3	54107	hgsc.bcm.edu	hg19	9	116172342	116172342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POLE3	NM_017443	exon3	c.A145G	p.T49A	AGGATGTGGCGTA	.	43.0	4.0	67.0	0.0	.	8	.	.	Atlas-SNP
COL27A1	85301	hgsc.bcm.edu	hg19	9	116931466	116931466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COL27A1	NM_032888	exon3	c.A1631G	p.K544R	CAAAGAAAGCCGG	.	87.0	4.0	115.0	0.0	.	200	.	.	Atlas-SNP
ASTN2	23245	hgsc.bcm.edu	hg19	9	119858432	119858432	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ASTN2	NM_014010	exon5	c.1016-2A>T	.	TCCTCCTGTGAGT	.	81.0	25.0	134.0	0.0	.	307	.	.	Atlas-SNP
PHF19	26147	hgsc.bcm.edu	hg19	9	123631484	123631484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PHF19	NM_015651	exon6	c.A590G	p.Y197C	TAGCAGTAGCATT	.	75.0	4.0	118.0	0.0	.	47	.	.	Atlas-SNP
DAB2IP	153090	hgsc.bcm.edu	hg19	9	124522560	124522560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DAB2IP	NM_032552	exon6	c.A928G	p.T310A	ACCATCACCATCC	.	81.0	4.0	134.0	0.0	.	150	.	.	Atlas-SNP
DAB2IP	153090	hgsc.bcm.edu	hg19	9	124528986	124528986	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DAB2IP	NM_032552	exon9	c.C1590T	p.T530T	GGTCACCCAGAAC	.	97.0	4.0	165.0	0.0	.	150	.	.	Atlas-SNP
ZNF79	7633	hgsc.bcm.edu	hg19	9	130206630	130206630	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF79	NM_007135	exon5	c.A651G	p.G217G	CACTGGAGAGAAG	.	66.0	4.0	109.0	0.0	.	47	.	.	Atlas-SNP
FAM129B	64855	hgsc.bcm.edu	hg19	9	130279252	130279252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	FAM129B_ENST00000373314,NS,carcinoma,0,2	FAM129B	NM_022833	exon8	c.G857T	p.R286L	TCGAAGCGCGCCT	.	68.0	3.0	78.0	0.0	.	84	.	.	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	hg19	9	131344805	131344805	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPTAN1	NM_003127	exon13	c.A1620G	p.A540A	CTATGCAATGGAA	.	93.0	4.0	138.0	0.0	.	266	.	.	Atlas-SNP
ZER1	10444	hgsc.bcm.edu	hg19	9	131502396	131502396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZER1	NM_006336	exon13	c.A1856G	p.N619S	AACAGGTTGCTGC	.	100.0	4.0	186.0	0.0	.	49	.	.	Atlas-SNP
NUP188	23511	hgsc.bcm.edu	hg19	9	131750464	131750464	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NUP188	NM_015354	exon24	c.T2532C	p.H844H	ACAACATGGTATG	.	98.0	4.0	155.0	0.0	.	140	.	.	Atlas-SNP
IER5L	389792	hgsc.bcm.edu	hg19	9	131939318	131939318	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IER5L	NM_203434	exon1	c.C1014A	p.R338R	CTCGAAGCGGGCG	.	77.0	4.0	84.0	0.0	.	4	.	.	Atlas-SNP
ABL1	25	hgsc.bcm.edu	hg19	9	133761037	133761037	+	Silent	SNP	G	G	T	rs148391456	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABL1	NM_007313	exon11	c.G3417T	p.S1139S	CAGTTCGGTGAAG	.	76.0	4.0	121.0	0.0	.	1632	.	G|1.000;A|0.000	Atlas-SNP
RAPGEF1	2889	hgsc.bcm.edu	hg19	9	134471699	134471699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RAPGEF1	NM_198679	exon14	c.A2171G	p.E724G	TCAGTCTCAGTAG	.	113.0	5.0	162.0	0.0	.	126	.	.	Atlas-SNP
SETX	23064	hgsc.bcm.edu	hg19	9	135204839	135204839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SETX	NM_015046	exon10	c.A2146G	p.K716E	TCTCTTTTACAGA	.	93.0	4.0	99.0	0.0	.	234	.	.	Atlas-SNP
RPL7A	6130	hgsc.bcm.edu	hg19	9	136217542	136217542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RPL7A	NM_000972	exon6	c.A586G	p.R196G	GTCCACAGGAAGA	.	78.0	4.0	107.0	0.0	.	9	.	.	Atlas-SNP
SLC2A6	11182	hgsc.bcm.edu	hg19	9	136339170	136339170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC2A6	NM_017585	exon7	c.T968C	p.L323P	GACAGGAGCCGCA	.	95.0	4.0	143.0	0.0	.	31	.	.	Atlas-SNP
CAMSAP1	157922	hgsc.bcm.edu	hg19	9	138773507	138773507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CAMSAP1	NM_015447	exon3	c.A557G	p.E186G	GCATCCTCGAGGT	.	99.0	4.0	174.0	0.0	.	142	.	.	Atlas-SNP
NACC2	138151	hgsc.bcm.edu	hg19	9	138905769	138905769	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NACC2	NM_144653	exon4	c.G1098A	p.L366L	TGCACACAGGTGG	.	72.0	4.0	93.0	0.0	.	16	.	.	Atlas-SNP
INPP5E	56623	hgsc.bcm.edu	hg19	9	139327478	139327478	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INPP5E	NM_019892	exon5	c.C1209T	p.T403T	CCCCTTGGTCTTG	.	115.0	5.0	206.0	0.0	.	18	.	.	Atlas-SNP
ANAPC2	29882	hgsc.bcm.edu	hg19	9	140082406	140082406	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANAPC2	NM_013366	exon2	c.T267C	p.P89P	GAACTCAGGGGAG	.	98.0	4.0	166.0	0.0	.	57	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	hg19	9	140777329	140777329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CACNA1B	NM_001243812	exon3	c.T524C	p.L175P	TCGTCCTCACAGG	.	65.0	4.0	155.0	0.0	.	266	.	.	Atlas-SNP
PFKFB3	5209	hgsc.bcm.edu	hg19	10	6258145	6258145	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PFKFB3	NM_004566	exon4	c.A357G	p.G119G	AGGGGGACAAATT	.	60.0	4.0	67.0	0.0	.	82	.	.	Atlas-SNP
SFMBT2	57713	hgsc.bcm.edu	hg19	10	7247790	7247790	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SFMBT2	NM_001029880	exon12	c.A1431G	p.P477P	TTTGTGTGGTGCA	.	107.0	5.0	189.0	0.0	.	209	.	.	Atlas-SNP
DHTKD1	55526	hgsc.bcm.edu	hg19	10	12160885	12160885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DHTKD1	NM_018706	exon15	c.A2540G	p.Q847R	CTTTACAGCAAGA	.	74.0	4.0	106.0	0.0	.	104	.	.	Atlas-SNP
SPAG6	9576	hgsc.bcm.edu	hg19	10	22680689	22680689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPAG6	NM_172242	exon8	c.A1037G	p.E346G	TGTCAGAAGAACC	.	72.0	4.0	105.0	0.0	.	90	.	.	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	hg19	10	25887786	25887786	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR158	NM_020752	exon11	c.A3231T	p.Q1077H	GAGCCAAGGCCAG	.	108.0	5.0	175.0	0.0	.	255	.	.	Atlas-SNP
SYT15	83849	hgsc.bcm.edu	hg19	10	46968621	46968621	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	SYT15_ENST00000374321,NS,carcinoma,0,2	SYT15	NM_031912	exon3	c.G315A	p.P105P	TGATGCCGGGCAG	.	43.0	3.0	40.0	0.0	.	165	.	.	Atlas-SNP
DKK1	22943	hgsc.bcm.edu	hg19	10	54074421	54074421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DKK1	NM_012242	exon1	c.C227A	p.T76N	ACCAGACCATTGA	.	52.0	4.0	117.0	0.0	.	35	.	.	Atlas-SNP
ZNF365	22891	hgsc.bcm.edu	hg19	10	64415380	64415380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF365	NM_199452	exon4	c.T380C	p.V127A	CAGGAGTTTCAAT	.	34.0	4.0	42.0	0.0	.	174	.	.	Atlas-SNP
EIF4EBP2	1979	hgsc.bcm.edu	hg19	10	72164180	72164180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EIF4EBP2	NM_004096	exon1	c.G23T	p.G8V	GCAGCGGCCACCA	.	78.0	4.0	70.0	0.0	.	7	.	.	Atlas-SNP
C10orf54	64115	hgsc.bcm.edu	hg19	10	73511520	73511520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C10orf54	NM_022153	exon6	c.A803G	p.Q268R	TGCCGCTGGGCCA	.	76.0	4.0	88.0	0.0	.	29	.	.	Atlas-SNP
ANXA7	310	hgsc.bcm.edu	hg19	10	75156931	75156931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANXA7	NM_004034	exon4	c.C361A	p.P121T	GTAGTGGAACCTG	.	56.0	4.0	61.0	0.0	.	50	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	hg19	10	76739019	76739019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_012330	exon10	c.G2153A	p.R718Q	GTGGCCGGTACCC	.	85.0	4.0	143.0	0.0	.	.	.	.	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	hg19	10	85968520	85968520	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CDHR1	NM_001171971	exon12	c.A1203G	p.G401G	GGTGGGACCCAGG	.	100.0	4.0	169.0	0.0	.	122	.	.	Atlas-SNP
ATAD1	84896	hgsc.bcm.edu	hg19	10	89530707	89530707	+	Splice_Site	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATAD1	NM_032810	exon8	c.780+2T>A	.	CCACCTACAGGCT	.	98.0	4.0	118.0	0.0	.	32	.	.	Atlas-SNP
ACTA2	59	hgsc.bcm.edu	hg19	10	90708594	90708594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACTA2	NM_001141945	exon2	c.G94A	p.V32I	GGAAAACAGCCCT	.	78.0	4.0	119.0	0.0	.	33	.	.	Atlas-SNP
IFIT1	3434	hgsc.bcm.edu	hg19	10	91163429	91163429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IFIT1	NM_001270927	exon3	c.T1397C	p.L466P	TGAGACTGGCTGC	.	99.0	5.0	118.0	0.0	.	30	.	.	Atlas-SNP
MYOF	26509	hgsc.bcm.edu	hg19	10	95107502	95107502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYOF	NM_013451	exon37	c.T4121C	p.V1374A	TTGATCACCAGTG	.	85.0	5.0	133.0	0.0	.	177	.	.	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	hg19	10	99148093	99148093	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RRP12	NM_015179	exon8	c.G933T	p.L311L	GTCCTTCAGCAGC	.	71.0	4.0	93.0	0.0	.	97	.	.	Atlas-SNP
CWF19L1	55280	hgsc.bcm.edu	hg19	10	101997942	101997942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CWF19L1	NM_018294	exon11	c.T1091C	p.L364P	AGGATGAGGACAT	.	125.0	5.0	191.0	0.0	.	39	.	.	Atlas-SNP
MRPL43	84545	hgsc.bcm.edu	hg19	10	102739042	102739042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MRPL43	NM_176792	exon5	c.G616A	p.V206I	CAGGGACAATCGG	.	120.0	5.0	197.0	0.0	.	16	.	.	Atlas-SNP
FBXW4	6468	hgsc.bcm.edu	hg19	10	103372236	103372236	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBXW4	NM_022039	exon8	c.837-2A>G	.	GCCCACTGGGAAG	.	61.0	4.0	82.0	0.0	.	39	.	.	Atlas-SNP
GBF1	8729	hgsc.bcm.edu	hg19	10	104119157	104119157	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GBF1	NM_001199378	exon11	c.G1145C	p.R382P	ATCCCCGGGGCGT	.	76.0	4.0	114.0	0.0	.	142	.	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	hg19	10	106970970	106970970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SORCS3	NM_014978	exon17	c.G2337T	p.K779N	ATCAAAGGACTGC	.	145.0	32.0	205.0	0.0	.	282	.	.	Atlas-SNP
RBM20	282996	hgsc.bcm.edu	hg19	10	112595736	112595736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RBM20	NM_001134363	exon14	c.A3684G	p.X1228W	GCTCTGATGCTTC	.	71.0	4.0	125.0	0.0	.	50	.	.	Atlas-SNP
TCF7L2	6934	hgsc.bcm.edu	hg19	10	114849213	114849213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TCF7L2	NM_001146283	exon5	c.T538C	p.S180P	CCCCCCTCAGACT	.	68.0	4.0	96.0	0.0	.	298	.	.	Atlas-SNP
PLEKHS1	79949	hgsc.bcm.edu	hg19	10	115534677	115534677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLEKHS1	NM_024889	exon10	c.A872G	p.Q291R	ACCTGCAAGAACA	.	74.0	4.0	114.0	0.0	.	19	.	.	Atlas-SNP
FAM160B1	57700	hgsc.bcm.edu	hg19	10	116605950	116605950	+	Missense_Mutation	SNP	C	C	A	rs17853717		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM160B1	NM_020940	exon10	c.C1222A	p.L408I	GGTATTCTCACAT	.	119.0	5.0	178.0	0.0	.	107	.	C|1.000;|0.000	Atlas-SNP
ATRNL1	26033	hgsc.bcm.edu	hg19	10	117093838	117093838	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATRNL1	NM_207303	exon19	c.C3084T	p.C1028C	TGTGTGCGAACAG	.	100.0	4.0	132.0	0.0	.	219	.	.	Atlas-SNP
KIAA1598	57698	hgsc.bcm.edu	hg19	10	118713701	118713701	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1598	NM_001258299	exon5	c.G288A	p.T96T	TTTCAACGTTTTA	.	89.0	4.0	122.0	0.0	.	74	.	.	Atlas-SNP
EIF3A	8661	hgsc.bcm.edu	hg19	10	120801517	120801517	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EIF3A	NM_003750	exon19	c.T3515A	p.L1172X	TTGACTAATGGTC	.	94.0	4.0	115.0	0.0	.	142	.	.	Atlas-SNP
DHX32	55760	hgsc.bcm.edu	hg19	10	127527737	127527737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	DHX32,colon,carcinoma,0,1	DHX32	NM_018180	exon9	c.C1714T	p.R572C	AATCACGACACCA	.	75.0	3.0	115.0	0.0	.	67	.	.	Atlas-SNP
ODF3	113746	hgsc.bcm.edu	hg19	11	197590	197590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ODF3	NM_053280	exon3	c.C139A	p.R47S	AAGCTGCGTGCAC	.	71.0	10.0	85.0	0.0	.	27	.	.	Atlas-SNP
BET1L	51272	hgsc.bcm.edu	hg19	11	206034	206034	+	Missense_Mutation	SNP	G	G	T	rs199668338	bycluster;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BET1L	NM_001098787	exon2	c.C29A	p.P10Q	GCGCCCGGGCTCT	.	70.0	4.0	119.0	0.0	.	7	.	.	Atlas-SNP
ANO9	338440	hgsc.bcm.edu	hg19	11	420547	420547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANO9	NM_001012302	exon19	c.A1702G	p.S568G	GGTTGCTGAAGAG	.	80.0	4.0	142.0	0.0	.	61	.	.	Atlas-SNP
AP2A2	161	hgsc.bcm.edu	hg19	11	1009727	1009727	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AP2A2	NM_001242837	exon21	c.T2655C	p.N885N	TCCTAATCCTGCG	.	96.0	4.0	136.0	0.0	.	50	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1083289	1083289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MUC2	NM_002457	exon16	c.G2189T	p.G730V	AGGCGGGGGATGT	.	74.0	4.0	62.0	0.0	.	614	.	.	Atlas-SNP
TSPAN32	10077	hgsc.bcm.edu	hg19	11	2337500	2337500	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TSPAN32	NM_139022	exon7	c.G585A	p.Q195Q	ACACCAGCAGGTC	.	120.0	6.0	203.0	0.0	.	19	.	.	Atlas-SNP
ZNF195	7748	hgsc.bcm.edu	hg19	11	3392927	3392927	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF195	NM_001256825	exon3	c.T22C	p.L8L	ACGTCAACAGAGT	.	79.0	4.0	115.0	0.0	.	77	.	.	Atlas-SNP
STIM1	6786	hgsc.bcm.edu	hg19	11	4112725	4112725	+	Silent	SNP	G	G	T	rs201902860	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	STIM1,NS,carcinoma,0,1	STIM1	NM_003156	exon12	c.G1755T	p.A585A	ACTGGCGCTGAAC	.	65.0	3.0	92.0	0.0	.	55	.	.	Atlas-SNP
MMP26	56547	hgsc.bcm.edu	hg19	11	5013445	5013445	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MMP26	NM_021801	exon6	c.A759G	p.G253G	CATAGGAGAAAAA	.	98.0	4.0	187.0	0.0	.	49	.	.	Atlas-SNP
OR52N5	390075	hgsc.bcm.edu	hg19	11	5799494	5799494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR52N5	NM_001001922	exon1	c.T371C	p.L124P	AGCATGAGCACCC	.	107.0	5.0	170.0	0.0	.	58	.	.	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	hg19	11	6415247	6415247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMPD1	NM_000543	exon5	c.A1462G	p.T488A	AGTGCAACTACCT	.	113.0	5.0	158.0	0.0	.	108	.	.	Atlas-SNP
ST5	6764	hgsc.bcm.edu	hg19	11	8717087	8717087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ST5	NM_005418	exon22	c.A3302G	p.E1101G	CGCTGCTCAAAAA	.	60.0	4.0	78.0	0.0	.	85	.	.	Atlas-SNP
SWAP70	23075	hgsc.bcm.edu	hg19	11	9715709	9715709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SWAP70	NM_015055	exon2	c.T116C	p.L39P	ATAACCTGTGCAC	.	108.0	5.0	144.0	0.0	.	40	.	.	Atlas-SNP
AMPD3	272	hgsc.bcm.edu	hg19	11	10514945	10514945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AMPD3	NM_000480	exon7	c.T1016C	p.L339P	ATCTGCTGCGCTT	.	85.0	4.0	147.0	0.0	.	68	.	.	Atlas-SNP
DKK3	27122	hgsc.bcm.edu	hg19	11	12020311	12020311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DKK3	NM_001018057	exon3	c.A367G	p.T123A	GTCCAGTCTGGTT	.	114.0	5.0	159.0	0.0	.	35	.	.	Atlas-SNP
MICAL2	9645	hgsc.bcm.edu	hg19	11	12278379	12278379	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MICAL2	NM_014632	exon24	c.G3003A	p.T1001T	CGACACGTGTTAC	.	69.0	4.0	104.0	0.0	.	114	.	.	Atlas-SNP
CYP2R1	120227	hgsc.bcm.edu	hg19	11	14902277	14902277	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYP2R1	NM_024514	exon3	c.T405C	p.D135D	TCTGTGATCAACC	.	99.0	4.0	167.0	0.0	.	41	.	.	Atlas-SNP
UEVLD	55293	hgsc.bcm.edu	hg19	11	18557968	18557968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UEVLD	NM_001040697	exon10	c.T1109C	p.V370A	AGCTGCACTTGAG	.	85.0	4.0	145.0	0.0	.	58	.	.	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	hg19	11	20077344	20077344	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NAV2	NM_001244963	exon20	c.T4741C	p.L1581L	ATGAGCTTGTCCA	.	73.0	4.0	112.0	0.0	.	255	.	.	Atlas-SNP
SLC5A12	159963	hgsc.bcm.edu	hg19	11	26700317	26700317	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC5A12	NM_178498	exon13	c.C1521T	p.Y507Y	TGCACTGTAGTAA	.	93.0	4.0	139.0	0.0	.	134	.	.	Atlas-SNP
QSER1	79832	hgsc.bcm.edu	hg19	11	32956867	32956867	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	QSER1	NM_001076786	exon4	c.T3676C	p.L1226L	GAACATTTATCTT	.	54.0	4.0	52.0	0.0	.	153	.	.	Atlas-SNP
TSPAN18	90139	hgsc.bcm.edu	hg19	11	44940765	44940765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TSPAN18	NM_130783	exon6	c.C334T	p.L112F	CCCCAGCTCACCC	.	92.0	4.0	122.0	0.0	.	38	.	.	Atlas-SNP
CKAP5	9793	hgsc.bcm.edu	hg19	11	46797922	46797922	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CKAP5	NM_001008938	exon24	c.A2874G	p.R958R	AGCAGCTCGAACA	.	98.0	4.0	127.0	0.0	.	134	.	.	Atlas-SNP
MADD	8567	hgsc.bcm.edu	hg19	11	47298398	47298398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MADD	NM_130474	exon5	c.T1079C	p.M360T	CCTGCATGGCATC	.	83.0	4.0	105.0	0.0	.	172	.	.	Atlas-SNP
OR4S1	256148	hgsc.bcm.edu	hg19	11	48328087	48328087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR4S1	NM_001004725	exon1	c.T313C	p.F105L	CACTTCTTTGGTG	.	81.0	4.0	135.0	0.0	.	52	.	.	Atlas-SNP
OR8I2	120586	hgsc.bcm.edu	hg19	11	55861280	55861280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.,5	OR8I2	NM_001003750	exon1	c.T497C	p.L166S	GCAGTTTGGCGTT	.	79.0	4.0	132.0	0.0	.	119	.	.	Atlas-SNP
OR5A2	219981	hgsc.bcm.edu	hg19	11	59189652	59189652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR5A2	NM_001001954	exon1	c.A775G	p.M259V	TGTACATGAAGAA	.	89.0	4.0	120.0	0.0	.	35	.	.	Atlas-SNP
CD5	921	hgsc.bcm.edu	hg19	11	60890419	60890419	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CD5	NM_014207	exon7	c.G1140A	p.V380V	CACGGTGGCAAGC	.	96.0	4.0	144.0	0.0	.	52	.	.	Atlas-SNP
VWCE	220001	hgsc.bcm.edu	hg19	11	61042033	61042033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VWCE	NM_152718	exon12	c.T1519C	p.W507R	CGTACCACCGGCC	.	69.0	4.0	96.0	0.0	.	84	.	.	Atlas-SNP
PPP1R32	220004	hgsc.bcm.edu	hg19	11	61249330	61249330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001170753	exon2	c.A49G	p.S17G	AAGATGAGTTCGG	.	44.0	4.0	50.0	0.0	.	.	.	.	Atlas-SNP
MTA2	9219	hgsc.bcm.edu	hg19	11	62364251	62364251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTA2	NM_004739	exon9	c.A740G	p.K247R	ATGGCCTTAGCCA	.	66.0	4.0	94.0	0.0	.	54	.	.	Atlas-SNP
EML3	256364	hgsc.bcm.edu	hg19	11	62375693	62375693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EML3	NM_153265	exon10	c.A1186G	p.M396V	GCTTCATTCCCCG	.	59.0	4.0	104.0	0.0	.	61	.	.	Atlas-SNP
STIP1	10963	hgsc.bcm.edu	hg19	11	63970927	63970927	+	Silent	SNP	G	G	T	rs144539134	bycluster;by1000genomes;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STIP1	NM_006819	exon13	c.G1392T	p.A464A	GGAGGCGGCAGAC	.	67.0	4.0	94.0	0.0	.	63	.	G|1.000;A|0.000	Atlas-SNP
TM7SF2	7108	hgsc.bcm.edu	hg19	11	64880311	64880311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TM7SF2	NM_003273	exon3	c.A278G	p.K93R	AGGACAAGAGTCG	.	75.0	4.0	105.0	0.0	.	30	.	.	Atlas-SNP
EHBP1L1	254102	hgsc.bcm.edu	hg19	11	65349836	65349836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EHBP1L1	NM_001099409	exon9	c.G1693A	p.G565R	GAAGCTGGGGGTT	.	39.0	9.0	50.0	0.0	.	64	.	.	Atlas-SNP
RELA	5970	hgsc.bcm.edu	hg19	11	65422122	65422122	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RELA	NM_021975	exon11	c.T1383C	p.A461A	GAACACAGCTGGG	.	91.0	4.0	132.0	0.0	.	44	.	.	Atlas-SNP
RBM14	10432	hgsc.bcm.edu	hg19	11	66392365	66392365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RBM14	NM_006328	exon2	c.T1018C	p.S340P	CTTGCCTCCTATG	.	90.0	4.0	152.0	0.0	.	59	.	.	Atlas-SNP
ANKRD13D	338692	hgsc.bcm.edu	hg19	11	67068507	67068507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANKRD13D	NM_207354	exon11	c.G1120A	p.G374S	TCCCTGGGTGACC	.	100.0	4.0	137.0	0.0	.	71	.	.	Atlas-SNP
TBX10	347853	hgsc.bcm.edu	hg19	11	67406938	67406938	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBX10	NM_005995	exon1	c.A6G	p.A2A	CCTACCTGCCATG	.	66.0	4.0	99.0	0.0	.	25	.	.	Atlas-SNP
IGHMBP2	3508	hgsc.bcm.edu	hg19	11	68682309	68682309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IGHMBP2	NM_002180	exon6	c.T730C	p.S244P	GCCCCCTCCAACA	.	77.0	4.0	102.0	0.0	.	83	.	.	Atlas-SNP
NUMA1	4926	hgsc.bcm.edu	hg19	11	71717144	71717144	+	Missense_Mutation	SNP	G	G	T	rs148430833	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	NUMA1,NS,carcinoma,0,1	NUMA1	NM_006185	exon22	c.C5629A	p.R1877S	TGGGGCGGTAGCC	.	65.0	3.0	137.0	1.0	.	142	.	G|1.000;A|0.000	Atlas-SNP
GDPD5	81544	hgsc.bcm.edu	hg19	11	75152777	75152777	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GDPD5	NM_030792	exon13	c.C1239T	p.G413G	CTTGGAGCCTGAT	.	60.0	4.0	112.0	0.0	.	49	.	.	Atlas-SNP
SERPINH1	871	hgsc.bcm.edu	hg19	11	75279838	75279838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SERPINH1	NM_001235	exon3	c.T685C	p.S229P	ACTCGGTCCTATA	.	121.0	5.0	237.0	0.0	.	33	.	.	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	hg19	11	76922240	76922240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYO7A	NM_000260	exon45	c.A6095G	p.E2032G	CGCGGGAGGAGGT	.	99.0	6.0	96.0	0.0	.	164	.	.	Atlas-SNP
ALG8	79053	hgsc.bcm.edu	hg19	11	77832116	77832116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ALG8	NM_024079	exon4	c.T473C	p.V158A	CGGTCCACAATTA	.	98.0	5.0	148.0	0.0	.	54	.	.	Atlas-SNP
CCDC90B	60492	hgsc.bcm.edu	hg19	11	82985021	82985021	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CCDC90B	NM_021825	exon5	c.A441G	p.E147E	GTCTAATTCAATT	.	99.0	4.0	182.0	0.0	.	20	.	.	Atlas-SNP
MRE11A	4361	hgsc.bcm.edu	hg19	11	94180593	94180593	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	MRE11A_ENST00000323929,right_upper_lobe,carcinoma,0,2	MRE11A	NM_005591	exon15	c.G1575A	p.R525R	TCTGGCCCTGGTC	.	51.0	3.0	96.0	0.0	.	145	.	.	Atlas-SNP
FAM76B	143684	hgsc.bcm.edu	hg19	11	95516268	95516268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM76B	NM_144664	exon5	c.A524G	p.H175R	TGATGATGGTGGT	.	315.0	80.0	443.0	1.0	.	10	.	.	Atlas-SNP
YAP1	10413	hgsc.bcm.edu	hg19	11	101984899	101984899	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	YAP1	NM_001130145	exon2	c.G346T	p.G116X	ACTGCAGGAGCCC	.	64.0	4.0	132.0	0.0	.	45	.	.	Atlas-SNP
EXPH5	23086	hgsc.bcm.edu	hg19	11	108409913	108409913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EXPH5	NM_015065	exon3	c.A281G	p.D94G	ATCGGATCTAGAA	.	91.0	4.0	144.0	0.0	.	193	.	.	Atlas-SNP
ANKK1	255239	hgsc.bcm.edu	hg19	11	113267990	113267990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	ANKK1,NS,carcinoma,0,1	ANKK1	NM_178510	exon6	c.C883T	p.R295C	CAGAGTCGTGTGG	.	55.0	3.0	82.0	0.0	.	83	.	.	Atlas-SNP
DDX6	1656	hgsc.bcm.edu	hg19	11	118626140	118626140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DDX6	NM_004397	exon12	c.A1247G	p.E416G	TAGGTCTCTGCCA	.	86.0	5.0	142.0	0.0	.	64	.	.	Atlas-SNP
HYOU1	10525	hgsc.bcm.edu	hg19	11	118917336	118917336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HYOU1	NM_006389	exon23	c.G2774T	p.R925L	TCTGCCCGGGTCC	.	94.0	4.0	199.0	0.0	.	88	.	.	Atlas-SNP
FOXRED1	55572	hgsc.bcm.edu	hg19	11	126147548	126147548	+	Silent	SNP	C	C	T	rs150932515		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FOXRED1	NM_017547	exon11	c.C1425T	p.Y475Y	CTTTTACTTGGGA	.	64.0	4.0	85.0	0.0	.	38	.	C|1.000;T|0.000	Atlas-SNP
B4GALNT3	283358	hgsc.bcm.edu	hg19	12	662900	662900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	B4GALNT3	NM_173593	exon14	c.A1811G	p.E604G	AAGTGGAGGGAGA	.	121.0	5.0	147.0	0.0	.	64	.	.	Atlas-SNP
FBXL14	144699	hgsc.bcm.edu	hg19	12	1702156	1702156	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBXL14	NM_152441	exon1	c.C1077T	p.T359T	TATGCCGGTGAGT	.	68.0	4.0	135.0	0.0	.	19	.	.	Atlas-SNP
TEAD4	7004	hgsc.bcm.edu	hg19	12	3121364	3121364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TEAD4	NM_003213	exon5	c.G320T	p.R107L	TGGCTCGTCGCAA	.	82.0	4.0	101.0	0.0	.	45	.	.	Atlas-SNP
KCNA1	3736	hgsc.bcm.edu	hg19	12	5020815	5020815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	KCNA1,lower_third,carcinoma,0,1	KCNA1	NM_000217	exon2	c.G271T	p.A91S	TTCGACGCCATCC	.	60.0	3.0	94.0	0.0	.	112	.	.	Atlas-SNP
NOP2	4839	hgsc.bcm.edu	hg19	12	6669315	6669315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NOP2	NM_001258309	exon16	c.T1837C	p.F613L	CAATGAAGAACCC	.	67.0	4.0	128.0	0.0	.	44	.	.	Atlas-SNP
GPR162	27239	hgsc.bcm.edu	hg19	12	6935396	6935396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR162	NM_019858	exon4	c.T1093C	p.C365R	CGAGTTTGCAAAG	.	75.0	4.0	78.0	0.0	.	55	.	.	Atlas-SNP
PZP	5858	hgsc.bcm.edu	hg19	12	9315205	9315205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PZP	NM_002864	exon22	c.A2776G	p.T926A	CACAGGTCATAGA	.	73.0	4.0	142.0	0.0	.	422	.	.	Atlas-SNP
CSDA	8531	hgsc.bcm.edu	hg19	12	10862602	10862602	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	CSDA,NS,carcinoma,0,1	CSDA	NM_003651	exon6	c.C685G	p.R229G	GAGGGCGATACTG	.	60.0	3.0	100.0	0.0	.	35	.	.	Atlas-SNP
KCNJ8	3764	hgsc.bcm.edu	hg19	12	21918966	21918966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KCNJ8	NM_004982	exon3	c.C966A	p.H322Q	AAAGCGGTGGCCC	.	98.0	4.0	121.0	0.0	.	59	.	.	Atlas-SNP
TSPAN11	441631	hgsc.bcm.edu	hg19	12	31132605	31132605	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TSPAN11	NM_001080509	exon5	c.T456C	p.D152D	GCAGGATGTAAGC	.	97.0	4.0	129.0	0.0	.	30	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43846211	43846211	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	ADAMTS20_ENST00000389420,NS,carcinoma,0,2	ADAMTS20	NM_025003	exon14	c.G1945C	p.G649R	TTGTGCCAACTGT	.	44.0	3.0	72.0	0.0	.	635	.	.	Atlas-SNP
PFKM	5213	hgsc.bcm.edu	hg19	12	48526741	48526741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PFKM	NM_001166686	exon7	c.A541G	p.I181V	CGTGGGATCACCA	.	143.0	6.0	255.0	0.0	.	117	.	.	Atlas-SNP
RHEBL1	121268	hgsc.bcm.edu	hg19	12	49459212	49459212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RHEBL1	NM_144593	exon7	c.A383G	p.E128G	TGTACCTCTCTGG	.	75.0	4.0	113.0	0.0	.	12	.	.	Atlas-SNP
PRPF40B	25766	hgsc.bcm.edu	hg19	12	50029645	50029645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	PRPF40B,colon,carcinoma,0,2	PRPF40B	NM_001031698	exon15	c.G1295A	p.R432Q	AGCTCCGGCGCCG	.	49.0	2.0	74.0	0.0	.	83	.	.	Atlas-SNP
FMNL3	91010	hgsc.bcm.edu	hg19	12	50040685	50040685	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FMNL3	NM_175736	exon25	c.C2979A	p.I993I	GTCCTCGATGGTA	.	150.0	6.0	252.0	0.0	.	137	.	.	Atlas-SNP
C12orf44	60673	hgsc.bcm.edu	hg19	12	52470974	52470974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C12orf44	NM_001098673	exon4	c.A657G	p.X219W	CCTCTGAGCGTCG	.	71.0	4.0	111.0	0.0	.	14	.	.	Atlas-SNP
KRT85	3891	hgsc.bcm.edu	hg19	12	52758122	52758122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KRT85	NM_002283	exon3	c.A658G	p.T220A	CTGCTGTGGCTCT	.	98.0	4.0	193.0	0.0	.	78	.	.	Atlas-SNP
TENC1	23371	hgsc.bcm.edu	hg19	12	53455989	53455989	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TENC1	NM_015319	exon23	c.A3657G	p.K1219K	GCCCAAAGGGGTG	.	66.0	5.0	103.0	0.0	.	148	.	.	Atlas-SNP
ZNF740	283337	hgsc.bcm.edu	hg19	12	53579803	53579803	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF740	NM_001004304	exon5	c.C315T	p.H105H	TGAACACTGCTTT	.	109.0	5.0	173.0	0.0	.	15	.	.	Atlas-SNP
HOXC12	3228	hgsc.bcm.edu	hg19	12	54350171	54350171	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HOXC12	NM_173860	exon2	c.T670C	p.L224L	TCGAAGTTGCAAC	.	98.0	4.0	124.0	0.0	.	19	.	.	Atlas-SNP
GPR84	53831	hgsc.bcm.edu	hg19	12	54757018	54757018	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR84	NM_020370	exon2	c.A618G	p.K206K	TGCTCGTTTGACC	.	51.0	5.0	76.0	0.0	.	38	.	.	Atlas-SNP
ITGA5	3678	hgsc.bcm.edu	hg19	12	54797978	54797978	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ITGA5	NM_002205	exon15	c.T1516A	p.F506I	GGTTGAACATGGC	.	98.0	4.0	102.0	0.0	.	99	.	.	Atlas-SNP
DCD	117159	hgsc.bcm.edu	hg19	12	55042049	55042049	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DCD	NM_053283	exon1	c.A39G	p.A13A	GGCTCCTGCCAGA	.	72.0	4.0	109.0	0.0	.	20	.	.	Atlas-SNP
NEUROD4	58158	hgsc.bcm.edu	hg19	12	55420695	55420695	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	NEUROD4,caecum,carcinoma,0,1	NEUROD4	NM_021191	exon2	c.C472T	p.L158L	GAGATGCTGTGTA	.	48.0	2.0	62.0	0.0	.	87	.	.	Atlas-SNP
PMEL	6490	hgsc.bcm.edu	hg19	12	56351868	56351868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PMEL	NM_001200054	exon5	c.G470A	p.G157D	TATTGGCCTGAAG	.	34.0	4.0	62.0	0.0	.	60	.	.	Atlas-SNP
PAN2	9924	hgsc.bcm.edu	hg19	12	56722129	56722129	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PAN2	NM_014871	exon4	c.G466T	p.E156X	TATCCTCATTCTC	.	83.0	4.0	157.0	0.0	.	107	.	.	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	hg19	12	56998513	56998513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAZ2A	NM_013449	exon15	c.G2825A	p.R942H	AAGCAGCGCAGGA	.	85.0	4.0	142.0	0.0	.	263	.	.	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	hg19	12	56999021	56999021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAZ2A	NM_013449	exon14	c.T2590C	p.F864L	TGCCAAAGCTATG	.	97.0	4.0	183.0	0.0	.	263	.	.	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	hg19	12	57005366	57005366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAZ2A	NM_013449	exon7	c.T1667C	p.L556P	TGTTGGAGGGGAA	.	117.0	5.0	209.0	0.0	.	263	.	.	Atlas-SNP
GPR182	11318	hgsc.bcm.edu	hg19	12	57389925	57389925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR182	NM_007264	exon2	c.T932C	p.L311P	CCATGCTGCACTG	.	83.0	4.0	139.0	0.0	.	35	.	.	Atlas-SNP
PIP4K2C	79837	hgsc.bcm.edu	hg19	12	57989718	57989718	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIP4K2C	NM_001146258	exon4	c.T417C	p.G139G	TGATGGTCGCTTC	.	87.0	4.0	146.0	0.0	.	50	.	.	Atlas-SNP
AVIL	10677	hgsc.bcm.edu	hg19	12	58191678	58191678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AVIL	NM_006576	exon19	c.A2447G	p.K816R	AGCCCCTTTTCTT	.	84.0	4.0	99.0	0.0	.	60	.	.	Atlas-SNP
IL22	50616	hgsc.bcm.edu	hg19	12	68646556	68646556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IL22	NM_020525	exon2	c.C240A	p.F80L	TCCGTGGAACAGT	.	73.0	4.0	119.0	0.0	.	21	.	.	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	hg19	12	78401192	78401192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	NAV3,right_lower_lobe,carcinoma,0,1	NAV3	NM_014903	exon8	c.C1874A	p.P625Q	GCCACCCGAATAC	.	36.0	2.0	50.0	0.0	.	506	.	.	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	hg19	12	78598913	78598913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NAV3	NM_014903	exon38	c.C6967A	p.P2323T	GGAGATCCCCTGG	.	58.0	4.0	69.0	0.0	.	506	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	80998862	80998862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PTPRQ	NM_001145026	exon24	c.T4118C	p.V1373A	AAAATGTTCATGT	.	86.0	4.0	132.0	0.0	.	119	.	.	Atlas-SNP
TMTC3	160418	hgsc.bcm.edu	hg19	12	88566387	88566387	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMTC3	NM_181783	exon8	c.T1064A	p.M355K	GTTTAATGGCATT	.	76.0	4.0	132.0	0.0	.	75	.	.	Atlas-SNP
METAP2	10988	hgsc.bcm.edu	hg19	12	95888769	95888769	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	METAP2	NM_006838	exon6	c.A627G	p.K209K	AATAAAAGAGAAT	.	91.0	4.0	180.0	0.0	.	28	.	.	Atlas-SNP
USP44	84101	hgsc.bcm.edu	hg19	12	95922582	95922582	+	Splice_Site	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP44	NM_032147	exon4	c.1624+1G>A	.	TACTCACAGTTAC	.	100.0	5.0	176.0	0.0	.	83	.	.	Atlas-SNP
NR1H4	9971	hgsc.bcm.edu	hg19	12	100955731	100955731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NR1H4	NM_001206993	exon8	c.C1177A	p.Q393K	ATGACTCAAGAGG	.	90.0	5.0	181.0	0.0	.	145	.	.	Atlas-SNP
GAS2L3	283431	hgsc.bcm.edu	hg19	12	101016162	101016162	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	GAS2L3,colon,carcinoma,0,1	GAS2L3	NM_174942	exon9	c.756+2T>A	.	TAAGAGTAAGTCC	.	59.0	3.0	95.0	0.0	.	76	.	.	Atlas-SNP
SLC5A8	160728	hgsc.bcm.edu	hg19	12	101581168	101581168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC5A8	NM_145913	exon7	c.A959G	p.D320G	ACCTGGTCTGGTG	.	97.0	4.0	109.0	0.0	.	102	.	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	hg19	12	101683948	101683948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UTP20	NM_014503	exon7	c.T631C	p.F211L	TTAATGTTTCTTG	.	120.0	5.0	230.0	0.0	.	222	.	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	hg19	12	101685546	101685546	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UTP20	NM_014503	exon9	c.A918G	p.K306K	CACAAAAGTAACA	.	96.0	4.0	127.0	0.0	.	222	.	.	Atlas-SNP
GLT8D2	83468	hgsc.bcm.edu	hg19	12	104393207	104393207	+	Missense_Mutation	SNP	G	G	A	rs199929846	bycluster	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GLT8D2	NM_031302	exon6	c.C370T	p.P124S	AGTCTGGTCTGAT	.	92.0	4.0	190.0	0.0	.	40	.	.	Atlas-SNP
KIAA1033	23325	hgsc.bcm.edu	hg19	12	105515979	105515979	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1033	NM_015275	exon10	c.A749G	p.K250R	TGCTGAAGCTAGA	.	99.0	4.0	130.0	0.0	.	83	.	.	Atlas-SNP
PRDM4	11108	hgsc.bcm.edu	hg19	12	108140127	108140127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRDM4	NM_012406	exon6	c.C1201A	p.P401T	CTATTGGAGTGTC	.	89.0	4.0	157.0	0.0	.	64	.	.	Atlas-SNP
CUX2	23316	hgsc.bcm.edu	hg19	12	111655742	111655742	+	Splice_Site	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	CUX2,bladder,carcinoma,0,1	CUX2	NM_015267	exon3	c.222+1G>A	.	GCCGAGGTAAGAC	.	90.0	4.0	113.0	0.0	.	145	.	.	Atlas-SNP
CIT	11113	hgsc.bcm.edu	hg19	12	120214542	120214542	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CIT	NM_001206999	exon14	c.A1770G	p.R590R	AGACTCTCTCAGC	.	69.0	4.0	108.0	0.0	.	535	.	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120582132	120582132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GCN1L1	NM_006836	exon42	c.T5473C	p.F1825L	CATCAAAGAGGCC	.	115.0	6.0	190.0	0.0	.	207	.	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120591048	120591048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GCN1L1	NM_006836	exon33	c.T4031C	p.L1344P	GCGATGAGCTTGG	.	110.0	5.0	188.0	0.0	.	207	.	.	Atlas-SNP
SIRT4	23409	hgsc.bcm.edu	hg19	12	120741675	120741675	+	Missense_Mutation	SNP	G	G	T	rs201393186	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	SIRT4,colon,carcinoma,0,1	SIRT4	NM_012240	exon2	c.G311T	p.R104L	GCCAGCGGTACTG	.	51.0	3.0	109.0	0.0	.	29	.	.	Atlas-SNP
ANAPC5	51433	hgsc.bcm.edu	hg19	12	121746389	121746389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANAPC5	NM_016237	exon17	c.A2162G	p.Y721C	GTATGGTAGAGTC	.	108.0	5.0	131.0	0.0	.	60	.	.	Atlas-SNP
KDM2B	84678	hgsc.bcm.edu	hg19	12	121868167	121868167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KDM2B	NM_032590	exon23	c.A3935G	p.E1312G	AACTGCTCACAGC	.	102.0	5.0	149.0	0.0	.	218	.	.	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	hg19	12	122247600	122247600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SETD1B	NM_015048	exon5	c.C749A	p.T250K	GTGGGACACCCTT	.	57.0	7.0	71.0	0.0	.	105	.	.	Atlas-SNP
ZNF664	144348	hgsc.bcm.edu	hg19	12	124497322	124497322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF664	NM_152437	exon5	c.A631G	p.S211G	AGTCAGAGTTCGA	.	60.0	4.0	95.0	0.0	.	27	.	.	Atlas-SNP
TMEM132B	114795	hgsc.bcm.edu	hg19	12	126136985	126136985	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM132B	NM_052907	exon8	c.1900-2A>G	.	CTTTTCAGGTCCT	.	69.0	4.0	97.0	0.0	.	207	.	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	hg19	12	130184852	130184852	+	Silent	SNP	G	G	A	rs139627769		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	TMEM132D,NS,carcinoma,0,2	TMEM132D	NM_133448	exon2	c.C471T	p.D157D	GCGGTCGTCCCAG	.	108.0	5.0	124.0	0.0	.	299	.	G|1.000;A|0.000	Atlas-SNP
P2RX2	22953	hgsc.bcm.edu	hg19	12	133197680	133197680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	P2RX2	NM_170683	exon8	c.C868T	p.P290S	CTTGACCCCAAGC	.	80.0	4.0	94.0	0.0	.	49	.	.	Atlas-SNP
GJB6	10804	hgsc.bcm.edu	hg19	13	20797362	20797362	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GJB6	NM_001110220	exon4	c.C258A	p.T86T	CGCTGGGGTGGAG	.	49.0	9.0	91.0	0.0	.	33	.	.	Atlas-SNP
XPO4	64328	hgsc.bcm.edu	hg19	13	21442736	21442736	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	XPO4_ENST00000255305,NS,carcinoma,0,2	XPO4	NM_022459	exon2	c.G174A	p.L58L	CTTACCCAAAATA	.	100.0	4.0	146.0	0.0	.	153	.	.	Atlas-SNP
SPATA13	221178	hgsc.bcm.edu	hg19	13	24797715	24797715	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPATA13	NM_001166271	exon2	c.T648A	p.D216E	GCTGGATGCGCCC	.	35.0	4.0	49.0	0.0	.	92	.	.	Atlas-SNP
SPATA13	221178	hgsc.bcm.edu	hg19	13	24798393	24798393	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPATA13	NM_001166271	exon2	c.A1326G	p.K442K	GAGCAAAGACTCC	.	96.0	4.0	181.0	0.0	.	92	.	.	Atlas-SNP
RNF17	56163	hgsc.bcm.edu	hg19	13	25442834	25442834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNF17	NM_031277	exon31	c.C4258T	p.H1420Y	GTTAAGCACGTTG	.	125.0	5.0	185.0	0.0	.	259	.	.	Atlas-SNP
ATP8A2	51761	hgsc.bcm.edu	hg19	13	26273338	26273338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	ATP8A2,bladder,carcinoma,0,1	ATP8A2	NM_016529	exon25	c.T2239C	p.C747R	CAGCACTGCACTG	.	43.0	2.0	98.0	0.0	.	181	.	.	Atlas-SNP
USPL1	10208	hgsc.bcm.edu	hg19	13	31232538	31232538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USPL1	NM_005800	exon9	c.T2324C	p.V775A	TCTGTGTTTCAGC	.	83.0	5.0	123.0	0.0	.	82	.	.	Atlas-SNP
STARD13	90627	hgsc.bcm.edu	hg19	13	33700281	33700281	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STARD13	NM_178006	exon7	c.A2019G	p.G673G	GGGCTGTCCCGTT	.	96.0	5.0	182.0	0.0	.	100	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	36046571	36046571	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	NBEA,lower_third,carcinoma,0,1	NBEA	NM_015678	exon41	c.C6483A	p.I2161I	GCTCATCGCTCCC	.	40.0	2.0	51.0	0.0	.	340	.	.	Atlas-SNP
DGKH	160851	hgsc.bcm.edu	hg19	13	42793388	42793388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DGKH	NM_001204504	exon28	c.A3236G	p.E1079G	ATGAAGAGCGAGT	.	80.0	4.0	130.0	0.0	.	106	.	.	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	hg19	13	42891711	42891711	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP11	NM_016248	exon12	c.G5452T	p.E1818X	GACATGGAGCCAT	.	85.0	4.0	153.0	0.0	.	146	.	.	Atlas-SNP
KIAA1704	55425	hgsc.bcm.edu	hg19	13	45589705	45589705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1704	NM_018559	exon6	c.C679T	p.P227S	GATACTCCAGCTG	.	98.0	4.0	136.0	0.0	.	36	.	.	Atlas-SNP
FAM124A	220108	hgsc.bcm.edu	hg19	13	51825706	51825706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM124A	NM_145019	exon4	c.T311C	p.V104A	ACAACGTCCTGGC	.	84.0	4.0	124.0	0.0	.	61	.	.	Atlas-SNP
PCDH17	27253	hgsc.bcm.edu	hg19	13	58209048	58209048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCDH17	NM_001040429	exon1	c.T2368C	p.S790P	AGCCCCTCCCTGG	.	67.0	7.0	108.0	0.0	.	304	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77672359	77672359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYCBP2	NM_015057	exon56	c.A8930G	p.K2977R	TCATCTTTCAGTG	.	96.0	4.0	188.0	0.0	.	1029	.	.	Atlas-SNP
SPRY2	10253	hgsc.bcm.edu	hg19	13	80911489	80911489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPRY2	NM_005842	exon2	c.T352C	p.S118P	TCCGCGACCCTGA	.	71.0	4.0	103.0	0.0	.	28	.	.	Atlas-SNP
GPC6	10082	hgsc.bcm.edu	hg19	13	94482742	94482742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPC6	NM_005708	exon3	c.A655G	p.R219G	GCTGCCAGGACCT	.	92.0	4.0	175.0	0.0	.	102	.	.	Atlas-SNP
UGGT2	55757	hgsc.bcm.edu	hg19	13	96530059	96530059	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UGGT2	NM_020121	exon28	c.G3280T	p.G1094X	ATTGTCCTTCCAG	.	62.0	4.0	82.0	0.0	.	127	.	.	Atlas-SNP
OR4K13	390433	hgsc.bcm.edu	hg19	14	20502875	20502875	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	OR4K13,NS,carcinoma,0,1	OR4K13	NM_001004714	exon1	c.T43C	p.L15L	GTCCCAACAAAAT	.	98.0	4.0	139.0	0.0	.	68	.	.	Atlas-SNP
OR10G2	26534	hgsc.bcm.edu	hg19	14	22102803	22102803	+	Missense_Mutation	SNP	T	T	C	rs370971403	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR10G2	NM_001005466	exon1	c.A196G	p.I66V	GAAGAATGTACAT	.	290.0	71.0	447.0	0.0	.	35	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	hg19	14	23540644	23540644	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACIN1	NM_001164816	exon1	c.G108T	p.R36R	CAAACCCCGAGTT	.	78.0	4.0	138.0	0.0	.	147	.	.	Atlas-SNP
AP1G2	8906	hgsc.bcm.edu	hg19	14	24035857	24035857	+	Silent	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AP1G2	NM_003917	exon3	c.A243T	p.T81T	CTTGTCTGTGAAT	.	77.0	4.0	97.0	0.0	.	75	.	.	Atlas-SNP
RNF31	55072	hgsc.bcm.edu	hg19	14	24617329	24617329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNF31	NM_017999	exon2	c.C337A	p.Q113K	GCTGTGCAGGTGA	.	83.0	5.0	82.0	0.0	.	95	.	.	Atlas-SNP
ADCY4	196883	hgsc.bcm.edu	hg19	14	24791372	24791372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADCY4	NM_001198592	exon21	c.A2486G	p.E829G	GTCTCCTCCCTCT	.	93.0	5.0	115.0	0.0	.	86	.	.	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	hg19	14	24868547	24868547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NYNRIN	NM_025081	exon2	c.A95G	p.Q32R	AAGTGCAGCGCAT	.	105.0	6.0	137.0	0.0	.	120	.	.	Atlas-SNP
FOXG1	2290	hgsc.bcm.edu	hg19	14	29237531	29237531	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	FOXG1,NS,carcinoma,0,1	FOXG1	NM_005249	exon1	c.C1046A	p.S349X	AGAACTCGCTGGG	.	67.0	3.0	98.0	0.0	.	92	.	.	Atlas-SNP
AKAP6	9472	hgsc.bcm.edu	hg19	14	33014622	33014622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP6	NM_004274	exon4	c.T763C	p.S255P	TTTGACTCTTGGA	.	100.0	4.0	173.0	0.0	.	308	.	.	Atlas-SNP
AKAP6	9472	hgsc.bcm.edu	hg19	14	33201661	33201661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP6	NM_004274	exon10	c.G3002T	p.R1001L	TTTAGCGATACAG	.	83.0	4.0	89.0	0.0	.	308	.	.	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	hg19	14	42356737	42356737	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRFN5	NM_152447	exon3	c.G909A	p.R303R	ACAAAGGGCAACA	.	93.0	4.0	140.0	0.0	.	269	.	.	Atlas-SNP
KLHL28	54813	hgsc.bcm.edu	hg19	14	45414503	45414503	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHL28	NM_017658	exon2	c.T629A	p.V210E	TCTTGTACATCAT	.	148.0	6.0	186.0	0.0	.	53	.	.	Atlas-SNP
FAM179B	23116	hgsc.bcm.edu	hg19	14	45464958	45464958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM179B	NM_015091	exon2	c.T2056C	p.Y686H	TCAACATATGATT	.	65.0	4.0	107.0	0.0	.	115	.	.	Atlas-SNP
FAM179B	23116	hgsc.bcm.edu	hg19	14	45535808	45535808	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM179B	NM_015091	exon16	c.C4428T	p.T1476T	AGTCACCAGAAAA	.	81.0	4.0	167.0	0.0	.	115	.	.	Atlas-SNP
LGALS3	3958	hgsc.bcm.edu	hg19	14	55611952	55611952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LGALS3	NM_002306	exon6	c.A716G	p.D239G	CTGGTGACATAGA	.	93.0	4.0	185.0	0.0	.	10	.	.	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	hg19	14	65241212	65241212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPTB	NM_001024858	exon23	c.C4876T	p.H1626Y	GCAAATGTCGCTT	.	81.0	4.0	129.0	0.0	.	378	.	.	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	hg19	14	65249225	65249225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPTB	NM_001024858	exon19	c.T4049C	p.V1350A	TGGGACACCAGGG	.	48.0	4.0	81.0	0.0	.	378	.	.	Atlas-SNP
ARG2	384	hgsc.bcm.edu	hg19	14	68086759	68086759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARG2	NM_001172	exon1	c.C65A	p.S22Y	AGAAATCCGTCCA	.	86.0	4.0	103.0	0.0	.	20	.	.	Atlas-SNP
SIPA1L1	26037	hgsc.bcm.edu	hg19	14	72090842	72090842	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIPA1L1	NM_015556	exon4	c.T1707C	p.P569P	CCTGCCTCTCAAA	.	75.0	4.0	90.0	0.0	.	219	.	.	Atlas-SNP
VSX2	338917	hgsc.bcm.edu	hg19	14	74706312	74706312	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VSX2	NM_182894	exon1	c.A48G	p.T16T	CGAGACAGTGGCC	.	96.0	4.0	143.0	0.0	.	32	.	.	Atlas-SNP
PROX2	283571	hgsc.bcm.edu	hg19	14	75330181	75330181	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PROX2	NM_001080408	exon1	c.T357C	p.P119P	CCAGGCAGGGGCT	.	89.0	5.0	118.0	0.0	.	44	.	.	Atlas-SNP
TTLL5	23093	hgsc.bcm.edu	hg19	14	76156612	76156612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTLL5	NM_015072	exon6	c.T449C	p.F150S	AGGCTTTTCACAT	.	124.0	5.0	157.0	0.0	.	102	.	.	Atlas-SNP
C14orf159	80017	hgsc.bcm.edu	hg19	14	91639751	91639751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C14orf159	NM_001102368	exon6	c.A575G	p.E192G	GAGGTGAGCAGGG	.	90.0	4.0	96.0	0.0	.	57	.	.	Atlas-SNP
IFI27L1	122509	hgsc.bcm.edu	hg19	14	94568204	94568204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IFI27L1	NM_145249	exon4	c.T106C	p.F36L	ATGGGCTTCACCT	.	99.0	6.0	157.0	0.0	.	11	.	.	Atlas-SNP
PPP4R4	57718	hgsc.bcm.edu	hg19	14	94716580	94716580	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	PPP4R4,NS,carcinoma,0,1	PPP4R4	NM_058237	exon15	c.A1683G	p.E561E	ACAAGAACAGAGA	.	66.0	4.0	118.0	0.0	.	107	.	.	Atlas-SNP
SERPINA10	51156	hgsc.bcm.edu	hg19	14	94750485	94750485	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SERPINA10	NM_001100607	exon5	c.A1152G	p.Q384Q	TGTTCTTTGTAAA	.	62.0	4.0	91.0	0.0	.	83	.	.	Atlas-SNP
SERPINA1	5265	hgsc.bcm.edu	hg19	14	94845816	94845816	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SERPINA1	NM_001127701	exon6	c.C1050T	p.P350P	CTTCAGGGGTGCC	.	53.0	6.0	79.0	0.0	.	51	.	.	Atlas-SNP
AK7	122481	hgsc.bcm.edu	hg19	14	96917876	96917876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AK7	NM_152327	exon10	c.T1067C	p.L356P	CTATCCTCAAGGA	.	88.0	4.0	105.0	0.0	.	69	.	.	Atlas-SNP
C14orf177	283598	hgsc.bcm.edu	hg19	14	99183503	99183503	+	Silent	SNP	G	G	T	rs149397774	byfrequency;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C14orf177	NM_182560	exon4	c.G270T	p.G90G	TCCAGGGTCATGT	.	112.0	5.0	198.0	0.0	.	37	.	G|1.000;A|0.000	Atlas-SNP
HSP90AA1	3320	hgsc.bcm.edu	hg19	14	102548723	102548723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HSP90AA1	NM_001017963	exon11	c.G2180T	p.G727V	GTCCAGCCATATG	.	99.0	5.0	136.0	0.0	.	65	.	.	Atlas-SNP
BAG5	9529	hgsc.bcm.edu	hg19	14	104026246	104026246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAG5	NM_001015049	exon2	c.A1379G	p.K460R	TTACACTTCTCTT	.	88.0	4.0	148.0	0.0	.	47	.	.	Atlas-SNP
CEP170B	283638	hgsc.bcm.edu	hg19	14	105349493	105349493	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001112726	exon8	c.C699T	p.T233T	GGAGACCCCGCAG	.	70.0	4.0	105.0	0.0	.	.	.	.	Atlas-SNP
FAN1	22909	hgsc.bcm.edu	hg19	15	31221547	31221547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAN1	NM_014967	exon12	c.A2734G	p.R912G	GAAGGCAGAGTGG	.	100.0	26.0	133.0	0.0	.	77	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	34040731	34040731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RYR3	NM_001243996	exon55	c.G8199T	p.Q2733H	GCTCCAGGTCAGT	.	75.0	4.0	71.0	0.0	.	760	.	.	Atlas-SNP
SLC12A6	9990	hgsc.bcm.edu	hg19	15	34547554	34547554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC12A6	NM_133647	exon7	c.C785A	p.P262Q	AACTCTGGGCCCA	.	69.0	4.0	108.0	0.0	.	205	.	.	Atlas-SNP
RPUSD2	27079	hgsc.bcm.edu	hg19	15	40865856	40865856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RPUSD2	NM_152260	exon3	c.A1034G	p.E345G	CCTGTGAGACAGT	.	92.0	4.0	118.0	0.0	.	28	.	.	Atlas-SNP
CASC5	57082	hgsc.bcm.edu	hg19	15	40914165	40914165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CASC5	NM_170589	exon11	c.C1781T	p.S594L	TCTTATCAGGTGA	.	95.0	5.0	130.0	0.0	.	269	.	.	Atlas-SNP
VPS18	57617	hgsc.bcm.edu	hg19	15	41191112	41191112	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VPS18	NM_020857	exon3	c.T241C	p.L81L	ATTGACTTGGGCA	.	75.0	4.0	100.0	0.0	.	67	.	.	Atlas-SNP
INO80	54617	hgsc.bcm.edu	hg19	15	41339666	41339666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INO80	NM_017553	exon23	c.G2675T	p.R892L	ATAAAGCGAAGGA	.	60.0	4.0	89.0	0.0	.	122	.	.	Atlas-SNP
MAPKBP1	23005	hgsc.bcm.edu	hg19	15	42104835	42104835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAPKBP1	NM_001128608	exon7	c.A620G	p.D207G	TCGATGACAGCAA	.	61.0	4.0	110.0	0.0	.	120	.	.	Atlas-SNP
MAPKBP1	23005	hgsc.bcm.edu	hg19	15	42107824	42107824	+	Silent	SNP	C	C	T	rs200313290	by1000genomes;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	MAPKBP1,brain,glioma,0,1	MAPKBP1	NM_001128608	exon13	c.C1338T	p.D446D	CTAGGACCTCATT	.	25.0	2.0	47.0	0.0	.	120	.	C|1.000;A|0.000	Atlas-SNP
GANC	2595	hgsc.bcm.edu	hg19	15	42621587	42621587	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GANC	NM_198141	exon14	c.T1584C	p.N528N	GAAGAATGCCATT	.	46.0	4.0	69.0	0.0	.	57	.	.	Atlas-SNP
LRRC57	255252	hgsc.bcm.edu	hg19	15	42839716	42839716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRC57	NM_153260	exon4	c.G235T	p.D79Y	TCTCATCAGGCAG	.	115.0	5.0	207.0	0.0	.	20	.	.	Atlas-SNP
TGM5	9333	hgsc.bcm.edu	hg19	15	43548802	43548802	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TGM5	NM_201631	exon4	c.G519A	p.K173K	CCAGTTCTTGCTG	.	119.0	6.0	163.0	0.0	.	88	.	.	Atlas-SNP
TUBGCP4	27229	hgsc.bcm.edu	hg19	15	43689513	43689513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TUBGCP4	NM_014444	exon12	c.C1273T	p.H425Y	AAGGAGCACAAAG	.	70.0	4.0	134.0	0.0	.	48	.	.	Atlas-SNP
SPG11	80208	hgsc.bcm.edu	hg19	15	44859730	44859730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPG11	NM_025137	exon36	c.G6646A	p.E2216K	GCTTTTCACTGTC	.	73.0	4.0	142.0	0.0	.	207	.	.	Atlas-SNP
SPG11	80208	hgsc.bcm.edu	hg19	15	44903081	44903081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPG11	NM_025137	exon18	c.T3248C	p.L1083P	AGGGCCAGGAGGG	.	95.0	5.0	116.0	0.0	.	207	.	.	Atlas-SNP
DUOXA2	405753	hgsc.bcm.edu	hg19	15	45408394	45408394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DUOXA2	NM_207581	exon3	c.C278T	p.A93V	GCGCAGCGCGCGT	.	76.0	4.0	97.0	0.0	.	38	.	.	Atlas-SNP
SLC24A5	283652	hgsc.bcm.edu	hg19	15	48413333	48413333	+	Missense_Mutation	SNP	C	C	A	rs201294244	bycluster;by1000genomes;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC24A5	NM_205850	exon1	c.C92A	p.S31Y	GGACCTCCCTGCC	.	55.0	4.0	60.0	0.0	.	64	.	C|0.999;T|0.001	Atlas-SNP
DMXL2	23312	hgsc.bcm.edu	hg19	15	51766616	51766616	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	DMXL2,colon,carcinoma,+1,1	DMXL2	NM_001174116	exon28	c.C7138A	p.R2380R	ACATTCGATTATT	.	84.0	4.0	125.0	2.0	.	262	.	.	Atlas-SNP
MYO5C	55930	hgsc.bcm.edu	hg19	15	52540902	52540902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYO5C	NM_018728	exon14	c.A1741G	p.S581G	CCTTGCTTGCTCT	.	94.0	6.0	179.0	0.0	.	162	.	.	Atlas-SNP
WDR72	256764	hgsc.bcm.edu	hg19	15	54003136	54003136	+	Missense_Mutation	SNP	C	C	T	rs374482757		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WDR72	NM_182758	exon9	c.G872A	p.S291N	TATATGCTTTTTG	.	52.0	4.0	47.0	0.0	.	177	.	.	Atlas-SNP
CCNB2	9133	hgsc.bcm.edu	hg19	15	59409529	59409529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CCNB2	NM_004701	exon7	c.T937C	p.S313P	GCTGCTTCCTGCT	.	64.0	4.0	111.0	0.0	.	23	.	.	Atlas-SNP
NARG2	79664	hgsc.bcm.edu	hg19	15	60720770	60720770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NARG2	NM_024611	exon15	c.G2678A	p.C893Y	AGGCCGCAATGTG	.	96.0	4.0	155.0	0.0	.	82	.	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	hg19	15	62352482	62352482	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VPS13C	NM_020821	exon1	c.T92G	p.I31S	CCCCAGATGCCCA	.	50.0	15.0	84.0	0.0	.	506	.	.	Atlas-SNP
USP3	9960	hgsc.bcm.edu	hg19	15	63850378	63850378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP3	NM_006537	exon6	c.A524G	p.Q175R	TCCTTCAGTCACT	.	56.0	4.0	119.0	0.0	.	37	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	64047472	64047472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HERC1	NM_003922	exon6	c.A1586G	p.D529G	TCCCCATCCTCTG	.	75.0	4.0	149.0	0.0	.	624	.	.	Atlas-SNP
CILP	8483	hgsc.bcm.edu	hg19	15	65490900	65490900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CILP	NM_003613	exon9	c.A1724G	p.K575R	ATGGGCTTTTTCC	.	77.0	4.0	126.0	0.0	.	124	.	.	Atlas-SNP
ZWILCH	55055	hgsc.bcm.edu	hg19	15	66820213	66820213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZWILCH	NM_017975	exon10	c.G932T	p.G311V	TGGATGGATTTGG	.	122.0	5.0	183.0	0.0	.	46	.	.	Atlas-SNP
HEXA	3073	hgsc.bcm.edu	hg19	15	72643538	72643538	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEXA	NM_000520	exon6	c.G608A	p.W203X	AGATGCCAGTGGA	.	82.0	4.0	108.0	0.0	.	48	.	.	Atlas-SNP
NEO1	4756	hgsc.bcm.edu	hg19	15	73418904	73418904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NEO1	NM_001172623	exon4	c.A871G	p.T291A	CTTGACACAGAAA	.	96.0	4.0	128.0	0.0	.	102	.	.	Atlas-SNP
LOXL1	4016	hgsc.bcm.edu	hg19	15	74239486	74239486	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LOXL1	NM_005576	exon4	c.C1428T	p.H476H	GGGCCACAAGGCC	.	81.0	4.0	128.0	0.0	.	25	.	.	Atlas-SNP
ISLR	3671	hgsc.bcm.edu	hg19	15	74467702	74467702	+	Missense_Mutation	SNP	C	C	T	rs371808969		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	ISLR,colon,carcinoma,0,1	ISLR	NM_201526	exon2	c.C503T	p.P168L	TCACCCCGCTCAC	.	40.0	3.0	52.0	0.0	.	49	.	.	Atlas-SNP
SEMA7A	8482	hgsc.bcm.edu	hg19	15	74710280	74710280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SEMA7A	NM_003612	exon4	c.A403G	p.R135G	TCCGCCTCTCCAG	.	74.0	4.0	110.0	0.0	.	58	.	.	Atlas-SNP
FBXO22	26263	hgsc.bcm.edu	hg19	15	76206465	76206465	+	Missense_Mutation	SNP	A	A	G	rs375440844		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBXO22	NM_012170	exon4	c.A382G	p.S128G	AGAACTAGTATGG	.	92.0	4.0	154.0	0.0	.	60	.	.	Atlas-SNP
TBC1D2B	23102	hgsc.bcm.edu	hg19	15	78301403	78301403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D2B	NM_144572	exon10	c.T2324C	p.L775P	GTAACGAGACACC	.	36.0	4.0	95.0	0.0	.	104	.	.	Atlas-SNP
TBC1D2B	23102	hgsc.bcm.edu	hg19	15	78308988	78308988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D2B	NM_144572	exon8	c.G1675A	p.G559R	TGGGCCCCTGGTC	.	75.0	4.0	105.0	0.0	.	104	.	.	Atlas-SNP
ACSBG1	23205	hgsc.bcm.edu	hg19	15	78485849	78485849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACSBG1	NM_015162	exon5	c.A662G	p.K221R	CAAACCTTCAGGA	.	76.0	5.0	134.0	0.0	.	79	.	.	Atlas-SNP
RASGRF1	5923	hgsc.bcm.edu	hg19	15	79339198	79339198	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RASGRF1	NM_001145648	exon5	c.G768T	p.V256V	CTGCTGCACGTAC	.	74.0	4.0	133.0	0.0	.	168	.	.	Atlas-SNP
KIAA1024	23251	hgsc.bcm.edu	hg19	15	79748703	79748703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1024	NM_015206	exon2	c.A214G	p.T72A	AAATGCACTGTGA	.	130.0	6.0	165.0	0.0	.	146	.	.	Atlas-SNP
AP3B2	8120	hgsc.bcm.edu	hg19	15	83331514	83331514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AP3B2	NM_004644	exon22	c.T2708C	p.I903T	CCCTTGATGGGGG	.	69.0	4.0	156.0	0.0	.	103	.	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86273745	86273745	+	Silent	SNP	A	A	G	rs116261620	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP13	NM_006738	exon30	c.A7101G	p.E2367E	TGCAGAACAACTT	.	56.0	4.0	60.0	0.0	.	394	.	A|0.998;C|0.002	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86273922	86273922	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	AKAP13,colon,carcinoma,0,1	AKAP13	NM_006738	exon30	c.A7278G	p.K2426K	AATGAAAAGTGCA	.	40.0	2.0	68.0	1.0	.	394	.	.	Atlas-SNP
RHCG	51458	hgsc.bcm.edu	hg19	15	90023578	90023578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RHCG	NM_016321	exon4	c.T584C	p.V195A	CGGGTCACTGTGA	.	125.0	5.0	177.0	0.0	.	49	.	.	Atlas-SNP
TTLL13	440307	hgsc.bcm.edu	hg19	15	90793872	90793872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTLL13	NM_001029964	exon2	c.A10G	p.S4G	GAGCCGAGTACCT	.	97.0	4.0	170.0	0.0	.	44	.	.	Atlas-SNP
SV2B	9899	hgsc.bcm.edu	hg19	15	91809826	91809826	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SV2B	NM_014848	exon8	c.A1023G	p.K341K	CATCAAAACTCCC	.	78.0	4.0	75.0	0.0	.	98	.	.	Atlas-SNP
LUC7L	55692	hgsc.bcm.edu	hg19	16	242959	242959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LUC7L	NM_201412	exon7	c.A743G	p.E248G	CTCTCCTCTCTCC	.	76.0	5.0	111.0	0.0	.	46	.	.	Atlas-SNP
MSLN	10232	hgsc.bcm.edu	hg19	16	815776	815776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MSLN	NM_005823	exon11	c.G881T	p.R294L	GGTTCCGGCGGGA	.	60.0	4.0	88.0	0.0	.	109	.	.	Atlas-SNP
CHTF18	63922	hgsc.bcm.edu	hg19	16	843038	843038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CHTF18	NM_022092	exon13	c.A1645G	p.I549V	AATGACATCCGGG	.	103.0	5.0	97.0	0.0	.	52	.	.	Atlas-SNP
BAIAP3	8938	hgsc.bcm.edu	hg19	16	1388575	1388575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAIAP3	NM_003933	exon2	c.A130G	p.S44G	ATTAAGAGCAGCG	.	178.0	8.0	286.0	0.0	.	88	.	.	Atlas-SNP
GFER	2671	hgsc.bcm.edu	hg19	16	2034924	2034924	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GFER	NM_005262	exon2	c.T435C	p.C145C	GGAGTGTGCTGAA	.	89.0	4.0	118.0	0.0	.	8	.	.	Atlas-SNP
RAB26	25837	hgsc.bcm.edu	hg19	16	2203391	2203391	+	Missense_Mutation	SNP	A	A	G	rs199768285	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RAB26	NM_014353	exon9	c.A740G	p.E247G	AGAGGGAGGGTCG	.	78.0	5.0	115.0	0.0	.	9	.	A|0.999;C|0.001	Atlas-SNP
CASKIN1	57524	hgsc.bcm.edu	hg19	16	2233896	2233896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CASKIN1	NM_020764	exon15	c.T1463C	p.L488P	GCGTAGAGCTGCA	.	72.0	5.0	103.0	0.0	.	130	.	.	Atlas-SNP
RNPS1	10921	hgsc.bcm.edu	hg19	16	2305610	2305610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNPS1	NM_006711	exon7	c.G794T	p.R265M	GGAGACCTGCGCC	.	91.0	4.0	175.0	0.0	.	18	.	.	Atlas-SNP
ABCA3	21	hgsc.bcm.edu	hg19	16	2358552	2358552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCA3	NM_001089	exon11	c.G1184T	p.R395L	TTGTACCGAGGGG	.	85.0	4.0	153.0	0.0	.	176	.	.	Atlas-SNP
PRSS33	260429	hgsc.bcm.edu	hg19	16	2834720	2834720	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRSS33	NM_152891	exon6	c.C768A	p.A256A	GGGCAGGGCACAA	.	99.0	4.0	143.0	0.0	.	7	.	.	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	hg19	16	3788625	3788625	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CREBBP	NM_004380	exon26	c.T4329C	p.R1443R	GAGGCAACGTGGC	.	89.0	4.0	102.0	0.0	.	546	.	.	Atlas-SNP
C16orf96	342346	hgsc.bcm.edu	hg19	16	4606555	4606555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C16orf96	NM_001145011	exon1	c.A65G	p.N22S	TGCTGAACTTCAA	.	84.0	4.0	94.0	0.0	.	28	.	.	Atlas-SNP
C16orf71	146562	hgsc.bcm.edu	hg19	16	4793096	4793096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C16orf71	NM_139170	exon5	c.A836G	p.E279G	GACAAGAAGACAA	.	86.0	4.0	126.0	0.0	.	46	.	.	Atlas-SNP
C16orf71	146562	hgsc.bcm.edu	hg19	16	4793141	4793141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	C16orf71,mucosal,malignant_melanoma,0,1	C16orf71	NM_139170	exon5	c.C881A	p.A294D	GGGCAGCTGACCA	.	49.0	4.0	65.0	0.0	.	46	.	.	Atlas-SNP
ZNF500	26048	hgsc.bcm.edu	hg19	16	4802991	4802991	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF500	NM_021646	exon6	c.C829A	p.R277R	GCACTCGGTACCA	.	40.0	4.0	57.0	0.0	.	45	.	.	Atlas-SNP
CLEC16A	23274	hgsc.bcm.edu	hg19	16	11114058	11114058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CLEC16A	NM_015226	exon11	c.A1312G	p.M438V	ATCGAGATGGTGA	.	85.0	4.0	137.0	0.0	.	101	.	.	Atlas-SNP
PDXDC1	23042	hgsc.bcm.edu	hg19	16	15128199	15128199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PDXDC1	NM_015027	exon20	c.G1869T	p.E623D	AGTGGAGCTGCAG	.	73.0	4.0	97.0	0.0	.	59	.	.	Atlas-SNP
XYLT1	64131	hgsc.bcm.edu	hg19	16	17235219	17235219	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	XYLT1,NS,carcinoma,0,1	XYLT1	NM_022166	exon7	c.C1378A	p.R460R	GCTTCCGAATGAA	.	27.0	2.0	39.0	0.0	.	147	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	20974803	20974803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DNAH3	NM_017539	exon53	c.A10403G	p.Q3468R	AATCCTTGAGAGA	.	78.0	4.0	99.0	0.0	.	1142	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	21008757	21008757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DNAH3	NM_017539	exon44	c.T6449C	p.V2150A	CCATACACCTCTT	.	104.0	5.0	150.0	0.0	.	1142	.	.	Atlas-SNP
GGA2	23062	hgsc.bcm.edu	hg19	16	23489698	23489698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GGA2	NM_015044	exon13	c.C1283A	p.P428Q	GGGCACGGAGCTG	.	87.0	4.0	146.0	0.0	.	49	.	.	Atlas-SNP
KIAA0556	23247	hgsc.bcm.edu	hg19	16	27640026	27640026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA0556	NM_015202	exon4	c.T185C	p.L62P	TGAGGCTGGAGCA	.	91.0	4.0	159.0	0.0	.	348	.	.	Atlas-SNP
CLN3	1201	hgsc.bcm.edu	hg19	16	28489132	28489132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CLN3	NM_001042432	exon15	c.T1123C	p.F375L	TCAGGAAGACGAG	.	71.0	4.0	113.0	0.0	.	33	.	.	Atlas-SNP
SH2B1	25970	hgsc.bcm.edu	hg19	16	28883910	28883910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SH2B1	NM_001145796	exon8	c.T1781C	p.F594S	TGTGGTTCCAGTC	.	161.0	7.0	219.0	0.0	.	160	.	.	Atlas-SNP
ZNF688	146542	hgsc.bcm.edu	hg19	16	30582420	30582420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF688	NM_145271	exon2	c.T221C	p.L74P	GAGATGAGGGCTG	.	64.0	4.0	94.0	0.0	.	37	.	.	Atlas-SNP
PRSS8	5652	hgsc.bcm.edu	hg19	16	31143805	31143805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRSS8	NM_002773	exon5	c.T650C	p.V217A	TCTTGGACAAAGT	.	92.0	7.0	121.0	0.0	.	24	.	.	Atlas-SNP
PRSS36	146547	hgsc.bcm.edu	hg19	16	31151659	31151659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRSS36	NM_173502	exon14	c.A2245G	p.T749A	AGAGGGTTCCAGG	.	98.0	4.0	162.0	0.0	.	50	.	.	Atlas-SNP
ZNF267	10308	hgsc.bcm.edu	hg19	16	31926790	31926790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF267	NM_003414	exon4	c.C1220A	p.P407Q	AGAAACCATACAA	.	49.0	4.0	100.0	0.0	.	94	.	.	Atlas-SNP
PHKB	5257	hgsc.bcm.edu	hg19	16	47698853	47698853	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PHKB	NM_000293	exon25	c.A2394G	p.P798P	AGCCCCACACATT	.	88.0	4.0	124.0	0.0	.	298	.	.	Atlas-SNP
N4BP1	9683	hgsc.bcm.edu	hg19	16	48595790	48595790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	N4BP1	NM_153029	exon2	c.T764C	p.L255P	CTAGAAAGGACTG	.	137.0	6.0	227.0	0.0	.	121	.	.	Atlas-SNP
ZNF423	23090	hgsc.bcm.edu	hg19	16	49671524	49671524	+	Silent	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF423	NM_015069	exon4	c.T1539A	p.G513G	ATTATTACCGTCA	.	54.0	4.0	80.0	0.0	.	463	.	.	Atlas-SNP
HEATR3	55027	hgsc.bcm.edu	hg19	16	50120179	50120179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEATR3	NM_182922	exon11	c.T1427C	p.L476P	TGTCCCTCCTGGA	.	108.0	5.0	180.0	0.0	.	59	.	.	Atlas-SNP
ADCY7	113	hgsc.bcm.edu	hg19	16	50346835	50346835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADCY7	NM_001114	exon21	c.T2639C	p.V880A	TCTGTGTCATGTT	.	51.0	4.0	83.0	0.0	.	90	.	.	Atlas-SNP
NOD2	64127	hgsc.bcm.edu	hg19	16	50745876	50745876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NOD2	NM_022162	exon4	c.A2054G	p.E685G	CCCGGGAGCACTG	.	90.0	4.0	113.0	0.0	.	118	.	.	Atlas-SNP
SLC12A3	6559	hgsc.bcm.edu	hg19	16	56906359	56906359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	SLC12A3,NS,carcinoma,0,1	SLC12A3	NM_001126108	exon7	c.T949C	p.F317L	AAAGGCTTCTTCA	.	51.0	3.0	68.0	0.0	.	99	.	.	Atlas-SNP
CPNE2	221184	hgsc.bcm.edu	hg19	16	57153527	57153527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CPNE2	NM_152727	exon7	c.T646C	p.S216P	TTGGTGTCCCTGT	.	123.0	5.0	213.0	0.0	.	48	.	.	Atlas-SNP
CNGB1	1258	hgsc.bcm.edu	hg19	16	57954321	57954321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CNGB1	NM_001297	exon19	c.G1771T	p.V591F	AGGTGACGTCAGG	.	77.0	4.0	111.0	0.0	.	105	.	.	Atlas-SNP
C16orf80	29105	hgsc.bcm.edu	hg19	16	58148804	58148804	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C16orf80	NM_013242	exon5	c.C486A	p.I162I	CCGTCGGATGCGA	.	70.0	4.0	110.0	0.0	.	17	.	.	Atlas-SNP
CSNK2A2	1459	hgsc.bcm.edu	hg19	16	58198047	58198047	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CSNK2A2	NM_001896	exon11	c.T981C	p.P327P	CACCACAGGGTCT	.	71.0	4.0	87.0	0.0	.	25	.	.	Atlas-SNP
CNOT1	23019	hgsc.bcm.edu	hg19	16	58620483	58620483	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CNOT1	NM_206999	exon7	c.A603G	p.E201E	TATCTGTTCTTGT	.	95.0	4.0	194.0	0.0	.	359	.	.	Atlas-SNP
B3GNT9	84752	hgsc.bcm.edu	hg19	16	67183637	67183637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	B3GNT9	NM_033309	exon2	c.A752G	p.D251G	AGCAGGTCTTGCG	.	86.0	4.0	147.0	0.0	.	25	.	.	Atlas-SNP
ELMO3	79767	hgsc.bcm.edu	hg19	16	67235697	67235697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ELMO3	NM_024712	exon11	c.G1130T	p.G377V	TGGAGGGGGAGTC	.	100.0	4.0	113.0	0.0	.	41	.	.	Atlas-SNP
KCTD19	146212	hgsc.bcm.edu	hg19	16	67331487	67331487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KCTD19	NM_001100915	exon7	c.A1066G	p.R356G	TGTCCCTTTTGTC	.	126.0	6.0	148.0	0.0	.	82	.	.	Atlas-SNP
NFATC3	4775	hgsc.bcm.edu	hg19	16	68156472	68156472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NFATC3	NM_173163	exon2	c.A686G	p.Y229C	AACAGTATGGACT	.	74.0	4.0	106.0	0.0	.	190	.	.	Atlas-SNP
HAS3	3038	hgsc.bcm.edu	hg19	16	69143389	69143389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HAS3	NM_138612	exon2	c.A91G	p.T31A	TATGTGACGGGCT	.	86.0	4.0	114.0	0.0	.	61	.	.	Atlas-SNP
FUK	197258	hgsc.bcm.edu	hg19	16	70502753	70502753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FUK	NM_145059	exon9	c.T665C	p.V222A	TCCAGGTCTCTGG	.	85.0	5.0	170.0	0.0	.	72	.	.	Atlas-SNP
HYDIN	54768	hgsc.bcm.edu	hg19	16	71163592	71163592	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HYDIN	NM_001198542	exon9	c.A1259G	p.Q420R	TCTCCCTGCACCA	.	80.0	4.0	121.0	0.0	.	788	.	.	Atlas-SNP
MARVELD3	91862	hgsc.bcm.edu	hg19	16	71660407	71660407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.,2	MARVELD3	NM_001017967	exon1	c.A275G	p.D92G	GCCGGGACACACA	.	65.0	3.0	86.0	0.0	.	63	.	.	Atlas-SNP
ZNF821	55565	hgsc.bcm.edu	hg19	16	71895749	71895749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF821	NM_001201553	exon6	c.C514A	p.H172N	CCGAGTGGATTAA	.	67.0	4.0	137.0	0.0	.	25	.	.	Atlas-SNP
MON1B	22879	hgsc.bcm.edu	hg19	16	77227387	77227387	+	Missense_Mutation	SNP	C	C	A	rs374424902	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	MON1B,NS,carcinoma,0,1	MON1B	NM_014940	exon3	c.C188A	p.P63Q	CACCACCGCCCCA	.	95.0	4.0	157.0	0.0	.	55	.	.	Atlas-SNP
PKD1L2	114780	hgsc.bcm.edu	hg19	16	81219117	81219117	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PKD1L2	NM_001076780	exon11	c.G1977A	p.W659X	GAGTTCCCAGGGC	.	96.0	5.0	87.0	0.0	.	361	.	.	Atlas-SNP
TAF1C	9013	hgsc.bcm.edu	hg19	16	84214784	84214784	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TAF1C	NM_005679	exon11	c.G1251A	p.P417P	ACAGCCCGGCGGG	.	99.0	4.0	190.0	0.0	.	60	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88503720	88503720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF469	NM_001127464	exon2	c.A9758G	p.N3253S	CCAGCAACCCAGA	.	115.0	5.0	119.0	0.0	.	121	.	.	Atlas-SNP
MVD	4597	hgsc.bcm.edu	hg19	16	88724396	88724396	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MVD	NM_002461	exon3	c.C183A	p.T61T	GTCCTCGGTGAAG	.	115.0	5.0	169.0	0.0	.	27	.	.	Atlas-SNP
CBFA2T3	863	hgsc.bcm.edu	hg19	16	88958364	88958364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CBFA2T3	NM_005187	exon5	c.A637G	p.I213V	CCTCGATCGTCAA	.	63.0	4.0	77.0	0.0	.	47	.	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89346917	89346917	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANKRD11	NM_001256183	exon9	c.G6033A	p.S2011S	CGCCTCCGAGGCG	.	44.0	4.0	58.0	0.0	.	195	.	.	Atlas-SNP
CPNE7	27132	hgsc.bcm.edu	hg19	16	89651220	89651220	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CPNE7	NM_014427	exon7	c.C771T	p.Y257Y	GCTCTACAGGGTC	.	54.0	5.0	69.0	0.0	.	56	.	.	Atlas-SNP
CLUH	23277	hgsc.bcm.edu	hg19	17	2605026	2605026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_015229	exon5	c.G511A	p.G171R	GCTTCCCGCTGTC	.	79.0	4.0	95.0	0.0	.	.	.	.	Atlas-SNP
PELP1	27043	hgsc.bcm.edu	hg19	17	4607242	4607242	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PELP1	NM_014389	exon1	c.G165A	p.P55P	ATGCACCGGAGCA	.	80.0	4.0	138.0	0.0	.	102	.	.	Atlas-SNP
NLRP1	22861	hgsc.bcm.edu	hg19	17	5425083	5425083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NLRP1	NM_001033053	exon13	c.T3556C	p.F1186L	TTTGGAACAGGGA	.	51.0	4.0	61.0	0.0	.	358	.	.	Atlas-SNP
FBXO39	162517	hgsc.bcm.edu	hg19	17	6683348	6683348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBXO39	NM_153230	exon2	c.A161G	p.E54G	CTGCTGAGCTCTG	.	137.0	6.0	225.0	0.0	.	50	.	.	Atlas-SNP
ACAP1	9744	hgsc.bcm.edu	hg19	17	7249578	7249578	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACAP1	NM_014716	exon11	c.T870C	p.I290I	CACCATTCAGAGC	.	109.0	5.0	189.0	0.0	.	66	.	.	Atlas-SNP
CHRNB1	1140	hgsc.bcm.edu	hg19	17	7359909	7359909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CHRNB1	NM_000747	exon11	c.A1373G	p.E458G	TGAAGGAGGACTG	.	78.0	4.0	121.0	0.0	.	46	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577602	7577602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	TP53_ENST00000545858,colon,carcinoma,0,1	TP53	NM_000546	exon7	c.T679C	p.S227P	AGTCAGAGCCAAC	.	149.0	6.0	208.0	2.0	.	33396	.	.	Atlas-SNP
WDR16	146845	hgsc.bcm.edu	hg19	17	9490134	9490134	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WDR16	NM_145054	exon3	c.A390G	p.G130G	ACTAGGAGGCCCA	.	80.0	4.0	175.0	0.0	.	67	.	.	Atlas-SNP
CDRT4	284040	hgsc.bcm.edu	hg19	17	15341250	15341250	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CDRT4	NM_001204477	exon4	c.C299A	p.S100X	CACATTGATAACG	.	121.0	5.0	172.0	0.0	.	11	.	.	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	hg19	17	18024955	18024955	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYO15A	NM_016239	exon2	c.A2841G	p.A947A	AGGTGCAGGCAGC	.	105.0	5.0	167.0	0.0	.	268	.	.	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	hg19	17	18055165	18055165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYO15A	NM_016239	exon40	c.A7793G	p.D2598G	GGAAGGATGGCGG	.	85.0	4.0	137.0	0.0	.	268	.	.	Atlas-SNP
USP22	23326	hgsc.bcm.edu	hg19	17	20914512	20914512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP22	NM_015276	exon8	c.G1055T	p.G352V	CTTTCCCCGTTTA	.	92.0	4.0	95.0	0.0	.	45	.	.	Atlas-SNP
PIGS	94005	hgsc.bcm.edu	hg19	17	26888474	26888474	+	Missense_Mutation	SNP	G	G	T	rs116094938	bycluster;by1000genomes;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIGS	NM_033198	exon6	c.C642A	p.S214R	CTCAGCGCTCCAC	.	82.0	5.0	141.0	0.0	.	42	.	G|1.000;A|0.000	Atlas-SNP
PHF12	57649	hgsc.bcm.edu	hg19	17	27251158	27251158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PHF12	NM_020889	exon4	c.A484G	p.S162G	GCCTGCTGGCTCT	.	186.0	8.0	275.0	0.0	.	69	.	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	hg19	17	29490211	29490211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NF1	NM_001128147	exon4	c.A296G	p.K99R	AACCAAAGGACAC	.	100.0	4.0	111.0	0.0	.	1586	.	.	Atlas-SNP
MYO19	80179	hgsc.bcm.edu	hg19	17	34884035	34884035	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYO19	NM_025109	exon6	c.13-2A>G	.	TTGACCTGGAAGA	.	50.0	4.0	75.0	0.0	.	130	.	.	Atlas-SNP
ACACA	31	hgsc.bcm.edu	hg19	17	35598872	35598872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACACA	NM_198834	exon23	c.A3029G	p.Q1010R	TACCTCTGTACCA	.	121.0	5.0	224.0	0.0	.	395	.	.	Atlas-SNP
PIP4K2B	8396	hgsc.bcm.edu	hg19	17	36934625	36934625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIP4K2B	NM_003559	exon6	c.G655A	p.G219S	TAGAACCCTGAAA	.	55.0	4.0	71.0	0.0	.	35	.	.	Atlas-SNP
MED24	9862	hgsc.bcm.edu	hg19	17	38187435	38187435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MED24	NM_014815	exon12	c.C1131A	p.S377R	GTTGACGCTGGCC	.	107.0	5.0	163.0	0.0	.	89	.	.	Atlas-SNP
KRTAP4-9	100132386	hgsc.bcm.edu	hg19	17	39261994	39261994	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	KRTAP4-9_ENST00000377734,NS,carcinoma,0,2	KRTAP4-9	NM_001146041	exon1	c.G354A	p.R118R	CCCTAGGTGCTGC	.	56.0	3.0	86.0	1.0	.	110	.	.	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	hg19	17	39274140	39274140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KRTAP4-11	NM_033059	exon1	c.G428T	p.S143I	CAGCAGCTGGAGA	.	97.0	18.0	148.0	0.0	.	94	.	.	Atlas-SNP
KRT15	3866	hgsc.bcm.edu	hg19	17	39673092	39673092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KRT15	NM_002275	exon3	c.G706A	p.E236K	CTAGCTCCTCATT	.	98.0	4.0	198.0	0.0	.	60	.	.	Atlas-SNP
HAP1	9001	hgsc.bcm.edu	hg19	17	39889015	39889015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HAP1	NM_177977	exon2	c.A505G	p.I169V	GGGTGATCTTTTT	.	130.0	6.0	250.0	0.0	.	48	.	.	Atlas-SNP
FKBP10	60681	hgsc.bcm.edu	hg19	17	39976640	39976640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FKBP10	NM_021939	exon7	c.A1183G	p.T395A	AATGAGACCACCA	.	140.0	6.0	221.0	0.0	.	57	.	.	Atlas-SNP
KAT2A	2648	hgsc.bcm.edu	hg19	17	40266531	40266531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KAT2A	NM_021078	exon14	c.C2111A	p.P704H	TCCACAGGGATCT	.	68.0	4.0	104.0	0.0	.	54	.	.	Atlas-SNP
EZH1	2145	hgsc.bcm.edu	hg19	17	40870506	40870506	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EZH1	NM_001991	exon9	c.C897A	p.C299X	GCGCCGGCAAAAA	.	72.0	4.0	130.0	0.0	.	62	.	.	Atlas-SNP
RUNDC1	146923	hgsc.bcm.edu	hg19	17	41142394	41142394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RUNDC1	NM_173079	exon4	c.A917G	p.K306R	GTGGGAAGACAGG	.	98.0	4.0	155.0	0.0	.	25	.	.	Atlas-SNP
BRCA1	672	hgsc.bcm.edu	hg19	17	41246557	41246557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BRCA1	NM_007300	exon10	c.A991G	p.R331G	TCCGCCTATCATT	.	116.0	5.0	154.0	0.0	.	304	.	.	Atlas-SNP
TMEM106A	113277	hgsc.bcm.edu	hg19	17	41365155	41365155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM106A	NM_145041	exon3	c.A95G	p.N32S	CTGTCAACTACTC	.	86.0	4.0	109.0	0.0	.	20	.	.	Atlas-SNP
FAM171A2	284069	hgsc.bcm.edu	hg19	17	42433683	42433683	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM171A2	NM_198475	exon5	c.T636C	p.A212A	GCTCACAGCAGTC	.	80.0	4.0	89.0	0.0	.	13	.	.	Atlas-SNP
ITGA2B	3674	hgsc.bcm.edu	hg19	17	42461045	42461045	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ITGA2B	NM_000419	exon12	c.A1026G	p.P342P	ATACAGTGGAGCG	.	94.0	4.0	146.0	0.0	.	88	.	.	Atlas-SNP
MAPT	4137	hgsc.bcm.edu	hg19	17	44049223	44049223	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAPT	NM_001123066	exon3	c.134-2A>G	.	TGTTCCAGAATCT	.	57.0	4.0	85.0	0.0	.	135	.	.	Atlas-SNP
EFCAB13	124989	hgsc.bcm.edu	hg19	17	45451912	45451912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_152347	exon12	c.A952C	p.K318Q	TATCTAAAATATA	.	160.0	45.0	303.0	0.0	.	.	.	.	Atlas-SNP
KPNB1	3837	hgsc.bcm.edu	hg19	17	45742517	45742517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KPNB1	NM_002265	exon9	c.C992T	p.S331F	CACTAACTAAACA	.	67.0	4.0	64.0	0.0	.	58	.	.	Atlas-SNP
OSBPL7	114881	hgsc.bcm.edu	hg19	17	45894019	45894019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OSBPL7	NM_145798	exon10	c.C838A	p.L280M	ACTCCAGGTAGCG	.	63.0	14.0	94.0	0.0	.	65	.	.	Atlas-SNP
SNF8	11267	hgsc.bcm.edu	hg19	17	47022064	47022064	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SNF8	NM_007241	exon1	c.C33A	p.I11I	CTTGGCGATGGCG	.	41.0	4.0	58.0	0.0	.	15	.	.	Atlas-SNP
TOB1	10140	hgsc.bcm.edu	hg19	17	48941375	48941375	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TOB1	NM_005749	exon2	c.C4T	p.Q2X	CAAGCTGCATAGC	.	45.0	4.0	68.0	0.0	.	40	.	.	Atlas-SNP
ERN1	2081	hgsc.bcm.edu	hg19	17	62132159	62132159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	ERN1_ENST00000433197,NS,carcinoma,0,2	ERN1	NM_001433	exon14	c.A1702G	p.K568E	AAATTTTCCCAAC	.	44.0	3.0	72.0	0.0	.	102	.	.	Atlas-SNP
AXIN2	8313	hgsc.bcm.edu	hg19	17	63534322	63534322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AXIN2	NM_004655	exon5	c.A1199G	p.E400G	ATTACCTCTCGGA	.	99.0	4.0	132.0	0.0	.	92	.	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	hg19	17	65850816	65850816	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BPTF	NM_004459	exon2	c.T1374C	p.H458H	TCGACATGAACCT	.	94.0	4.0	134.0	0.0	.	415	.	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	hg19	17	65942113	65942113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BPTF	NM_182641	exon21	c.C7289T	p.P2430L	CACAGCCCCAAGT	.	149.0	31.0	198.0	0.0	.	415	.	.	Atlas-SNP
ABCA6	23460	hgsc.bcm.edu	hg19	17	67111077	67111077	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCA6	NM_080284	exon13	c.A1608G	p.G536G	AACTGATCCTAAG	.	46.0	5.0	52.0	0.0	.	210	.	.	Atlas-SNP
TMEM104	54868	hgsc.bcm.edu	hg19	17	72784959	72784959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM104	NM_017728	exon4	c.A199G	p.M67V	GAGGCCATGGCTG	.	42.0	4.0	48.0	0.0	.	49	.	.	Atlas-SNP
SLC25A19	60386	hgsc.bcm.edu	hg19	17	73279599	73279599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC25A19	NM_001126122	exon4	c.T364C	p.F122L	ATACAAAGTGCAC	.	80.0	4.0	105.0	0.0	.	25	.	.	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	hg19	17	73926112	73926112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBF1	NM_001080542	exon6	c.A203G	p.E68G	TCTGCCTCTGAGA	.	40.0	4.0	58.0	0.0	.	48	.	.	Atlas-SNP
EVPL	2125	hgsc.bcm.edu	hg19	17	74014678	74014678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EVPL	NM_001988	exon12	c.C1288A	p.Q430K	GCAGCTGCACCTG	.	140.0	41.0	199.0	0.0	.	155	.	.	Atlas-SNP
MGAT5B	146664	hgsc.bcm.edu	hg19	17	74898718	74898718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MGAT5B	NM_198955	exon3	c.G444T	p.Q148H	GGACCAGATCCTG	.	117.0	23.0	207.0	0.0	.	98	.	.	Atlas-SNP
MGAT5B	146664	hgsc.bcm.edu	hg19	17	74944796	74944796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MGAT5B	NM_198955	exon16	c.A2282G	p.E761G	GCCAGGAGTGCTA	.	107.0	5.0	147.0	0.0	.	98	.	.	Atlas-SNP
SEPT9	10801	hgsc.bcm.edu	hg19	17	75471676	75471676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SEPT9	NM_001113495	exon1	c.T76C	p.S26P	CTGGATTCAGGGG	.	81.0	4.0	153.0	0.0	.	105	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76450568	76450568	+	Missense_Mutation	SNP	G	G	T	rs371338775	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DNAH17	NM_173628	exon64	c.C10390A	p.R3464S	CCAGGCGGATGGC	.	101.0	5.0	150.0	0.0	.	347	.	.	Atlas-SNP
CYTH1	9267	hgsc.bcm.edu	hg19	17	76695035	76695035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYTH1	NM_017456	exon8	c.T566C	p.L189P	AAGGAGAGGACGT	.	157.0	7.0	220.0	0.0	.	36	.	.	Atlas-SNP
USP36	57602	hgsc.bcm.edu	hg19	17	76799931	76799931	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP36	NM_025090	exon16	c.G2346T	p.T782T	CAGCGCCGTCGAG	.	68.0	19.0	107.0	0.0	.	243	.	.	Atlas-SNP
C1QTNF1	114897	hgsc.bcm.edu	hg19	17	77043987	77043987	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C1QTNF1	NM_030968	exon4	c.G663A	p.L221L	GATCTTGTTCGCG	.	95.0	4.0	155.0	0.0	.	62	.	.	Atlas-SNP
PYCR1	5831	hgsc.bcm.edu	hg19	17	79892251	79892251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PYCR1	NM_153824	exon6	c.T748C	p.F250L	AGCGGAAGCCCCC	.	56.0	4.0	127.0	0.0	.	44	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80041462	80041462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FASN	NM_004104	exon31	c.A5272G	p.R1758G	AGCACCTCACGCT	.	64.0	5.0	83.0	0.0	.	154	.	.	Atlas-SNP
HEXDC	284004	hgsc.bcm.edu	hg19	17	80399134	80399134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEXDC	NM_173620	exon10	c.G1244T	p.R415M	GCTGGAGGGCAAC	.	101.0	5.0	208.0	0.0	.	43	.	.	Atlas-SNP
FN3K	64122	hgsc.bcm.edu	hg19	17	80699230	80699230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FN3K	NM_022158	exon4	c.C429A	p.F143L	CAAGTTCGGCTTC	.	87.0	4.0	114.0	0.0	.	17	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2726476	2726476	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMCHD1	NM_015295	exon22	c.T2727C	p.P909P	TCTGCCTGGCTTA	.	67.0	4.0	118.0	0.0	.	88	.	.	Atlas-SNP
L3MBTL4	91133	hgsc.bcm.edu	hg19	18	6138235	6138235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	L3MBTL4	NM_173464	exon14	c.G1157A	p.G386E	CCTATTCCTCGGC	.	66.0	4.0	67.0	0.0	.	87	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	6955406	6955406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LAMA1	NM_005559	exon57	c.T8153C	p.L2718P	TGTGTGAGACCAA	.	142.0	6.0	178.0	0.0	.	458	.	.	Atlas-SNP
SPIRE1	56907	hgsc.bcm.edu	hg19	18	12535544	12535544	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPIRE1	NM_020148	exon4	c.A660G	p.V220V	ACGACATACTGCC	.	94.0	4.0	183.0	0.0	.	120	.	.	Atlas-SNP
CABLES1	91768	hgsc.bcm.edu	hg19	18	20774473	20774473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CABLES1	NM_001100619	exon3	c.A979G	p.N327D	ATCAAGAACATGC	.	94.0	4.0	146.0	0.0	.	32	.	.	Atlas-SNP
ANKRD29	147463	hgsc.bcm.edu	hg19	18	21218861	21218861	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANKRD29	NM_173505	exon4	c.C282A	p.V94V	TCTCACGACATCA	.	98.0	4.0	145.0	0.0	.	24	.	.	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21451567	21451567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LAMA3	NM_001127717	exon38	c.T4940C	p.I1647T	GGCGCATAGCACT	.	99.0	4.0	144.0	0.0	.	397	.	.	Atlas-SNP
PSMA8	143471	hgsc.bcm.edu	hg19	18	23713973	23713973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PSMA8	NM_001025096	exon1	c.A44G	p.D15G	CCCCAGACGGACA	.	122.0	5.0	200.0	0.0	.	36	.	.	Atlas-SNP
DSG4	147409	hgsc.bcm.edu	hg19	18	28968861	28968861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DSG4	NM_001134453	exon5	c.C397T	p.R133W	AATTCACGGGGTG	.	117.0	5.0	160.0	0.0	.	343	.	.	Atlas-SNP
B4GALT6	9331	hgsc.bcm.edu	hg19	18	29207086	29207086	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	B4GALT6,NS,carcinoma,0,1	B4GALT6	NM_004775	exon8	c.777-2A>G	.	GAAGACTAGAAAA	.	50.0	4.0	83.0	1.0	.	44	.	.	Atlas-SNP
MEP1B	4225	hgsc.bcm.edu	hg19	18	29800206	29800206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MEP1B	NM_005925	exon15	c.T2104C	p.X702R	GCTTTTTGAAGAT	.	86.0	4.0	122.0	0.0	.	54	.	.	Atlas-SNP
NOL4	8715	hgsc.bcm.edu	hg19	18	31673528	31673528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NOL4	NM_003787	exon5	c.A673G	p.M225V	CACTCATGTCAAA	.	72.0	4.0	103.0	0.0	.	139	.	.	Atlas-SNP
SIGLEC15	284266	hgsc.bcm.edu	hg19	18	43417043	43417043	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIGLEC15	NM_213602	exon2	c.A102G	p.T34T	CAACACAGAGGTG	.	71.0	4.0	77.0	0.0	.	10	.	.	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	hg19	18	43528527	43528527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EPG5	NM_020964	exon6	c.A1513G	p.N505D	ATGGGTTATGCAA	.	46.0	10.0	75.0	0.0	.	199	.	.	Atlas-SNP
C18orf25	147339	hgsc.bcm.edu	hg19	18	43795775	43795775	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C18orf25	.	.	.	.	TTGTACAGGTTGC	.	48.0	4.0	70.0	0.0	.	27	.	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	hg19	18	44181373	44181373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	LOXHD1_ENST00000398722,scalp,malignant_melanoma,0,2	LOXHD1	NM_144612	exon8	c.C941A	p.S314Y	ATTTTGGATTTGG	.	51.0	3.0	73.0	1.0	.	367	.	.	Atlas-SNP
MBD2	8932	hgsc.bcm.edu	hg19	18	51690975	51690975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MBD2	NM_003927	exon5	c.G1027A	p.A343T	CCACAGCAGCGGA	.	94.0	4.0	132.0	0.0	.	28	.	.	Atlas-SNP
SERPINB8	5271	hgsc.bcm.edu	hg19	18	61654208	61654208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	SERPINB8,NS,carcinoma,0,1	SERPINB8	NM_198833	exon7	c.A821G	p.E274G	AGCTGGAGGAGAG	.	96.0	5.0	155.0	0.0	.	42	.	.	Atlas-SNP
TXNL4A	10907	hgsc.bcm.edu	hg19	18	77748286	77748286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TXNL4A	NM_006701	exon1	c.C107A	p.P36H	CACGTAGGATCCC	.	67.0	5.0	122.0	0.0	.	6	.	.	Atlas-SNP
MIER2	54531	hgsc.bcm.edu	hg19	19	311933	311933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MIER2	NM_017550	exon10	c.T896C	p.L299P	GCACAGAGCCCAT	.	89.0	4.0	163.0	0.0	.	51	.	.	Atlas-SNP
TPGS1	91978	hgsc.bcm.edu	hg19	19	507710	507710	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_033513	exon1	c.T204C	p.A68A	CCTGGCTCACTAC	.	111.0	6.0	136.0	0.0	.	.	.	.	Atlas-SNP
ELANE	1991	hgsc.bcm.edu	hg19	19	855736	855736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ELANE	NM_001972	exon4	c.T539C	p.L180P	CGTCCCTCTGCCG	.	87.0	4.0	126.0	0.0	.	27	.	.	Atlas-SNP
MED16	10025	hgsc.bcm.edu	hg19	19	890977	890977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MED16	NM_005481	exon2	c.G155A	p.R52H	TCGCTGCGCAGGT	.	52.0	12.0	82.0	0.0	.	61	.	.	Atlas-SNP
MIDN	90007	hgsc.bcm.edu	hg19	19	1255586	1255586	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	MIDN,NS,carcinoma,0,1	MIDN	NM_177401	exon7	c.C1022G	p.P341R	CCTCACCGGCCCC	.	66.0	3.0	63.0	0.0	.	34	.	.	Atlas-SNP
C19orf25	148223	hgsc.bcm.edu	hg19	19	1478838	1478838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C19orf25	NM_152482	exon2	c.A65G	p.Q22R	AGGATCTGCTCCA	.	79.0	4.0	157.0	0.0	.	3	.	.	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	hg19	19	2396594	2396594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMPRSS9	NM_182973	exon2	c.G200T	p.R67L	GAATCCGGTGGAC	.	89.0	5.0	131.0	0.0	.	79	.	.	Atlas-SNP
SLC39A3	29985	hgsc.bcm.edu	hg19	19	2733301	2733301	+	Silent	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC39A3	NM_144564	exon3	c.G393C	p.S131S	ATACTCCGAGTCG	.	68.0	4.0	110.0	0.0	.	20	.	.	Atlas-SNP
ZNF77	58492	hgsc.bcm.edu	hg19	19	2933802	2933802	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF77	NM_021217	exon4	c.T1323C	p.C441C	TTTCCCACAATGC	.	65.0	4.0	117.0	0.0	.	47	.	.	Atlas-SNP
TLE2	7089	hgsc.bcm.edu	hg19	19	3006425	3006425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TLE2	NM_001144761	exon16	c.A1535G	p.D512G	AGGCAGTCGAGCT	.	110.0	5.0	113.0	0.0	.	35	.	.	Atlas-SNP
NFIC	4782	hgsc.bcm.edu	hg19	19	3381967	3381967	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NFIC	NM_001245004	exon2	c.C288T	p.I96I	GAGCATCACCGGC	.	74.0	4.0	89.0	0.0	.	36	.	.	Atlas-SNP
FSD1	79187	hgsc.bcm.edu	hg19	19	4323608	4323608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FSD1	NM_024333	exon13	c.G1459A	p.A487T	GGCAGTGCTACCA	.	111.0	5.0	197.0	0.0	.	51	.	.	Atlas-SNP
VAV1	7409	hgsc.bcm.edu	hg19	19	6828673	6828673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VAV1	NM_005428	exon12	c.A1133G	p.E378G	ACAACGAGACACT	.	98.0	4.0	144.0	0.0	.	140	.	.	Atlas-SNP
INSR	3643	hgsc.bcm.edu	hg19	19	7132201	7132201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INSR	NM_000208	exon14	c.C2810T	p.T937M	GGTTCCGTCCAAG	.	87.0	4.0	120.0	0.0	.	265	.	.	Atlas-SNP
ZNF558	148156	hgsc.bcm.edu	hg19	19	8922642	8922642	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF558	NM_144693	exon6	c.C524G	p.T175S	TCTCCAGTATGAA	.	79.0	4.0	134.0	0.0	.	43	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	8976277	8976277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MUC16	NM_024690	exon75	c.A42551G	p.D14184G	AGGCTATCCCTGT	.	98.0	5.0	95.0	0.0	.	4315	.	.	Atlas-SNP
ZNF177	7730	hgsc.bcm.edu	hg19	19	9491942	9491942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF177	NM_001172651	exon6	c.A935G	p.Y312C	AGCCTTATGAGTG	.	91.0	4.0	165.0	0.0	.	57	.	.	Atlas-SNP
S1PR5	53637	hgsc.bcm.edu	hg19	19	10624905	10624905	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	S1PR5	NM_030760	exon2	c.G783T	p.V261V	ACATGCCACAAAG	.	78.0	5.0	96.0	0.0	.	33	.	.	Atlas-SNP
C19orf80	55908	hgsc.bcm.edu	hg19	19	11352157	11352157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C19orf80	NM_018687	exon3	c.C496T	p.L166F	TGGGCCCTCACAG	.	72.0	18.0	130.0	0.0	.	8	.	.	Atlas-SNP
FBXW9	84261	hgsc.bcm.edu	hg19	19	12805705	12805705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBXW9	NM_032301	exon2	c.C457A	p.L153M	GGGACAGGTGCTG	.	82.0	4.0	118.0	0.0	.	30	.	.	Atlas-SNP
NDUFB7	4713	hgsc.bcm.edu	hg19	19	14677715	14677715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NDUFB7	NM_004146	exon2	c.A143G	p.D48G	TGCGCGTCCATCA	.	79.0	4.0	113.0	0.0	.	14	.	.	Atlas-SNP
AKAP8	10270	hgsc.bcm.edu	hg19	19	15485443	15485443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP8	NM_005858	exon3	c.C62T	p.A21V	CCATATGCACCTT	.	94.0	5.0	177.0	0.0	.	68	.	.	Atlas-SNP
MRPL34	64981	hgsc.bcm.edu	hg19	19	17416718	17416718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MRPL34	NM_023937	exon1	c.G17T	p.G6V	TGGCTGGATCCCT	.	93.0	4.0	169.0	0.0	.	5	.	.	Atlas-SNP
KIAA1683	80726	hgsc.bcm.edu	hg19	19	18376583	18376583	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1683	NM_001145304	exon3	c.A1767G	p.G589G	CCCAGTTCCCGGA	.	79.0	5.0	101.0	0.0	.	190	.	.	Atlas-SNP
SUGP2	10147	hgsc.bcm.edu	hg19	19	19129923	19129923	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SUGP2	NM_014884	exon4	c.T1845C	p.A615A	CCAGTAAGCAGGG	.	83.0	4.0	139.0	0.0	.	107	.	.	Atlas-SNP
ZNF90	7643	hgsc.bcm.edu	hg19	19	20229869	20229869	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	ZNF90_ENST00000418063,NS,carcinoma,0,1	ZNF90	NM_007138	exon4	c.T1506C	p.I502I	GATAATTCACAGT	.	56.0	4.0	74.0	0.0	.	93	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22157552	22157552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF208	NM_007153	exon4	c.T284C	p.F95S	TTTTGGAAAGAAT	.	123.0	6.0	198.0	0.0	.	817	.	.	Atlas-SNP
ZNF728	388523	hgsc.bcm.edu	hg19	19	23159603	23159603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001267716	exon4	c.T536C	p.V179A	GATCTGACATATT	.	133.0	6.0	198.0	0.0	.	.	.	.	Atlas-SNP
WDR88	126248	hgsc.bcm.edu	hg19	19	33623281	33623281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WDR88	NM_173479	exon1	c.C206T	p.P69L	CACCACCGCATCT	.	82.0	4.0	105.0	0.0	.	50	.	.	Atlas-SNP
LSR	51599	hgsc.bcm.edu	hg19	19	35758316	35758316	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LSR	NM_205834	exon9	c.G1593A	p.R531R	CAGCCGGGACGAC	.	44.0	4.0	55.0	0.0	.	60	.	.	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	hg19	19	36002356	36002356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.,2	DMKN	NM_001126058	exon5	c.A875G	p.N292S	CCACTGTTGCCAC	.	73.0	4.0	92.0	1.0	.	116	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36222960	36222960	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MLL4	NM_014727	exon27	c.T5589C	p.A1863A	GGGGGCTCGAATC	.	45.0	4.0	59.0	0.0	.	229	.	.	Atlas-SNP
APLP1	333	hgsc.bcm.edu	hg19	19	36368656	36368656	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	APLP1	NM_005166	exon12	c.A1481T	p.E494V	CCAGTGAATTGGA	.	75.0	4.0	68.0	0.0	.	77	.	.	Atlas-SNP
ZFP14	57677	hgsc.bcm.edu	hg19	19	36853129	36853129	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	ZFP14,NS,carcinoma,0,1	ZFP14	NM_020917	exon3	c.A21G	p.T7T	CCTGAATGTCACT	.	66.0	4.0	123.0	0.0	.	68	.	.	Atlas-SNP
ZNF567	163081	hgsc.bcm.edu	hg19	19	37210227	37210227	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF567	NM_152603	exon4	c.C508T	p.Q170X	CAGTATCAGAAAA	.	78.0	4.0	136.0	0.0	.	61	.	.	Atlas-SNP
ZNF790	388536	hgsc.bcm.edu	hg19	19	37309733	37309733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF790	NM_206894	exon5	c.C1513A	p.P505T	CATATGGCCTCTT	.	71.0	4.0	125.0	0.0	.	89	.	.	Atlas-SNP
ZNF420	147923	hgsc.bcm.edu	hg19	19	37619072	37619072	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF420	NM_144689	exon5	c.T1179A	p.C393X	TGAATGTAAGGAA	.	98.0	4.0	146.0	0.0	.	71	.	.	Atlas-SNP
ZNF569	148266	hgsc.bcm.edu	hg19	19	37905051	37905051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF569	NM_152484	exon6	c.C509A	p.P170H	TTCACAGGTTCAT	.	82.0	4.0	130.0	0.0	.	101	.	.	Atlas-SNP
SIPA1L3	23094	hgsc.bcm.edu	hg19	19	38633306	38633306	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIPA1L3	NM_015073	exon12	c.C3489T	p.T1163T	CTCCACCCCCGGT	.	69.0	4.0	87.0	0.0	.	150	.	.	Atlas-SNP
EIF3K	27335	hgsc.bcm.edu	hg19	19	39111009	39111009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EIF3K	NM_013234	exon2	c.G92T	p.R31L	TGGAGCGCTATGT	.	83.0	4.0	113.0	0.0	.	22	.	.	Atlas-SNP
ADCK4	79934	hgsc.bcm.edu	hg19	19	41220243	41220243	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADCK4	NM_001142555	exon3	c.G162A	p.L54L	CTCACCCAGGCCT	.	84.0	4.0	126.0	0.0	.	92	.	.	Atlas-SNP
AXL	558	hgsc.bcm.edu	hg19	19	41762466	41762466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AXL	NM_021913	exon18	c.A2146G	p.I716V	AAGTGGATTGCCA	.	121.0	5.0	192.0	0.0	.	126	.	.	Atlas-SNP
DEDD2	162989	hgsc.bcm.edu	hg19	19	42703669	42703669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DEDD2	NM_133328	exon5	c.A902G	p.E301G	TCAGCCTCATCCA	.	101.0	5.0	182.0	0.0	.	16	.	.	Atlas-SNP
XRCC1	7515	hgsc.bcm.edu	hg19	19	44048332	44048332	+	Missense_Mutation	SNP	C	C	A	rs2307167	bycluster;byfrequency;byhapmap;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	XRCC1	NM_006297	exon15	c.G1676T	p.R559L	TTCCGCCGCTCGT	.	92.0	4.0	104.0	0.0	.	47	.	C|0.999;T|0.001	Atlas-SNP
ZNF227	7770	hgsc.bcm.edu	hg19	19	44739253	44739253	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF227	NM_182490	exon6	c.A670C	p.K224Q	GAACCAAAACCCT	.	81.0	24.0	122.0	0.0	.	62	.	.	Atlas-SNP
ZNF227	7770	hgsc.bcm.edu	hg19	19	44740046	44740046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF227	NM_182490	exon6	c.G1463T	p.G488V	ACACGGGAGAGAA	.	83.0	4.0	134.0	0.0	.	62	.	.	Atlas-SNP
BCAM	4059	hgsc.bcm.edu	hg19	19	45322317	45322317	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	BCAM,NS,carcinoma,0,1	BCAM	NM_001013257	exon11	c.G1341T	p.S447S	AGGCTCGCCAGAG	.	59.0	4.0	130.0	1.0	.	53	.	.	Atlas-SNP
VASP	7408	hgsc.bcm.edu	hg19	19	46021235	46021235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VASP	NM_003370	exon3	c.A226G	p.T76A	CAGGCCACCCCCA	.	191.0	10.0	260.0	0.0	.	26	.	.	Atlas-SNP
NOVA2	4858	hgsc.bcm.edu	hg19	19	46444042	46444042	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	NOVA2,colon,carcinoma,0,1	NOVA2	NM_002516	exon4	c.C558T	p.P186P	CTGCTCGGGCTCG	.	49.0	2.0	97.0	0.0	.	38	.	.	Atlas-SNP
EHD2	30846	hgsc.bcm.edu	hg19	19	48219955	48219955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EHD2	NM_014601	exon2	c.A86G	p.Y29C	AGCTGTACCGCAC	.	80.0	4.0	118.0	0.0	.	59	.	.	Atlas-SNP
LIG1	3978	hgsc.bcm.edu	hg19	19	48636262	48636262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LIG1	NM_000234	exon18	c.A1702G	p.K568E	CATATTTGTATTC	.	96.0	4.0	145.0	0.0	.	151	.	.	Atlas-SNP
PIH1D1	55011	hgsc.bcm.edu	hg19	19	49950318	49950318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIH1D1	NM_017916	exon7	c.C650A	p.P217H	AGGTCGGGGGCTT	.	63.0	4.0	117.0	0.0	.	23	.	.	Atlas-SNP
AP2A1	160	hgsc.bcm.edu	hg19	19	50303262	50303262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AP2A1	NM_130787	exon11	c.T1310C	p.V437A	ACGCCGTGGACTA	.	98.0	4.0	163.0	0.0	.	108	.	.	Atlas-SNP
POLD1	5424	hgsc.bcm.edu	hg19	19	50921165	50921165	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POLD1	NM_002691	exon27	c.C3285T	p.L1095L	GCAGCTCCTGCGG	.	174.0	52.0	255.0	0.0	.	174	.	.	Atlas-SNP
ZNF808	388558	hgsc.bcm.edu	hg19	19	53057390	53057390	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF808	NM_001039886	exon5	c.T1221C	p.A407A	TAAGGCTTTTAAT	.	92.0	4.0	156.0	0.0	.	81	.	.	Atlas-SNP
ZNF611	81856	hgsc.bcm.edu	hg19	19	53208496	53208496	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF611	NM_030972	exon7	c.T1812C	p.S604S	CCTGCGACTGAAG	.	88.0	4.0	145.0	0.0	.	72	.	.	Atlas-SNP
ZNF665	79788	hgsc.bcm.edu	hg19	19	53667902	53667902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF665	NM_024733	exon4	c.C1841T	p.A614V	TGATTTGCAAGAT	.	98.0	6.0	139.0	0.0	.	136	.	.	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	hg19	19	53854926	53854926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF845	NM_138374	exon4	c.G998A	p.G333D	AATGTGGCAAGAC	.	67.0	4.0	156.0	0.0	.	101	.	.	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	hg19	19	53855322	53855322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	ZNF845,NS,carcinoma,0,1	ZNF845	NM_138374	exon4	c.A1394G	p.K465R	GAGAGAAACCTTA	.	68.0	4.0	120.0	0.0	.	101	.	.	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	hg19	19	55496563	55496563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NLRP2	NM_017852	exon7	c.A2179G	p.T727A	TCTGACACCTGTC	.	68.0	4.0	72.0	0.0	.	161	.	.	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	hg19	19	55497649	55497649	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NLRP2	NM_017852	exon8	c.T2332C	p.L778L	GAGGTCTTGAGAC	.	97.0	4.0	157.0	0.0	.	161	.	.	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	hg19	19	55708079	55708079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PTPRH	NM_002842	exon10	c.C2068A	p.Q690K	CTCCCTGGGGGCA	.	75.0	4.0	110.0	0.0	.	139	.	.	Atlas-SNP
NLRP11	204801	hgsc.bcm.edu	hg19	19	56320276	56320276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NLRP11	NM_145007	exon5	c.A1700G	p.E567G	GTAACCTCCATGA	.	100.0	4.0	212.0	0.0	.	139	.	.	Atlas-SNP
NLRP5	126206	hgsc.bcm.edu	hg19	19	56565058	56565058	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	NLRP5_ENST00000390649,NS,carcinoma,0,1	NLRP5	NM_153447	exon13	c.C3183A	p.I1061I	TGTGATCTCGAGG	.	89.0	20.0	148.0	0.0	.	217	.	.	Atlas-SNP
ZNF582	147948	hgsc.bcm.edu	hg19	19	56895790	56895790	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF582	NM_144690	exon5	c.T996C	p.V332V	AGTATGAACAGTC	.	84.0	4.0	126.0	0.0	.	56	.	.	Atlas-SNP
ZNF667	63934	hgsc.bcm.edu	hg19	19	56953574	56953574	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF667	NM_022103	exon5	c.C790T	p.Q264X	ACATCTGATTGAA	.	104.0	5.0	180.0	0.0	.	95	.	.	Atlas-SNP
ZIK1	284307	hgsc.bcm.edu	hg19	19	58102154	58102154	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZIK1	NM_001010879	exon4	c.T975C	p.C325C	TGAGTGTAGCCAG	.	76.0	4.0	115.0	0.0	.	94	.	.	Atlas-SNP
ZNF418	147686	hgsc.bcm.edu	hg19	19	58438293	58438293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF418	NM_133460	exon4	c.G1256A	p.G419D	GTGTGACCTCGCT	.	97.0	4.0	152.0	0.0	.	76	.	.	Atlas-SNP
ZNF418	147686	hgsc.bcm.edu	hg19	19	58438372	58438372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF418	NM_133460	exon4	c.A1177G	p.T393A	CTCTAGTGTGAAC	.	103.0	8.0	155.0	0.0	.	76	.	.	Atlas-SNP
ZNF606	80095	hgsc.bcm.edu	hg19	19	58491239	58491239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF606	NM_025027	exon7	c.T809C	p.V270A	TGATAAACAGTTT	.	57.0	4.0	104.0	0.0	.	155	.	.	Atlas-SNP
ZNF544	27300	hgsc.bcm.edu	hg19	19	58773098	58773098	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF544	NM_014480	exon7	c.G1126T	p.G376X	CACACTGGAGAAA	.	48.0	4.0	69.0	0.0	.	57	.	.	Atlas-SNP
C20orf96	140680	hgsc.bcm.edu	hg19	20	259904	259904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C20orf96	NM_153269	exon5	c.T374C	p.L125P	CGGTTGAGCTTGC	.	86.0	4.0	121.0	0.0	.	28	.	.	Atlas-SNP
TMC2	117532	hgsc.bcm.edu	hg19	20	2593953	2593953	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMC2	NM_080751	exon14	c.C1857G	p.D619E	CTGGGACTTGGAG	.	313.0	68.0	513.0	0.0	.	121	.	.	Atlas-SNP
SIGLEC1	6614	hgsc.bcm.edu	hg19	20	3677238	3677238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIGLEC1	NM_023068	exon10	c.T2678C	p.V893A	CCTCGGACCTGGA	.	89.0	4.0	155.0	0.0	.	210	.	.	Atlas-SNP
SIGLEC1	6614	hgsc.bcm.edu	hg19	20	3678483	3678483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIGLEC1	NM_023068	exon8	c.T2084C	p.L695P	TTGCCCAGGGCAT	.	69.0	4.0	101.0	0.0	.	210	.	.	Atlas-SNP
PLCB4	5332	hgsc.bcm.edu	hg19	20	9438138	9438138	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLCB4	NM_001172646	exon33	c.3072+2T>A	.	CTAAGGTAAGAAA	.	195.0	8.0	314.0	0.0	.	204	.	.	Atlas-SNP
MGME1	92667	hgsc.bcm.edu	hg19	20	17968897	17968897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_052865	exon4	c.G820A	p.A274T	GTTGTGGCATACA	.	97.0	4.0	151.0	0.0	.	.	.	.	Atlas-SNP
DZANK1	55184	hgsc.bcm.edu	hg19	20	18407716	18407716	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DZANK1	NM_001099407	exon10	c.C949T	p.Q317X	CCTCTTGTGATGA	.	75.0	18.0	98.0	0.0	.	65	.	.	Atlas-SNP
DZANK1	55184	hgsc.bcm.edu	hg19	20	18414338	18414338	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DZANK1	NM_001099407	exon9	c.T819C	p.P273P	AGCAAGAGGGGCC	.	87.0	4.0	142.0	0.0	.	65	.	.	Atlas-SNP
ABHD12	26090	hgsc.bcm.edu	hg19	20	25284191	25284191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABHD12	NM_001042472	exon11	c.A1024G	p.R342G	CCTTTCTGCCAAG	.	35.0	4.0	38.0	0.0	.	46	.	.	Atlas-SNP
CPNE1	8904	hgsc.bcm.edu	hg19	20	34215233	34215233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CPNE1	NM_003915	exon14	c.C1220T	p.A407V	TGGGCTGCAAACC	.	120.0	5.0	141.0	0.0	.	44	.	.	Atlas-SNP
EPB41L1	2036	hgsc.bcm.edu	hg19	20	34765929	34765929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EPB41L1	NM_001258329	exon5	c.T398C	p.L133P	ACCTCCTAGAGAA	.	94.0	4.0	102.0	0.0	.	111	.	.	Atlas-SNP
MAFB	9935	hgsc.bcm.edu	hg19	20	39316659	39316659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAFB	NM_005461	exon1	c.G832A	p.E278K	GCTGCTCCACCTG	.	94.0	4.0	124.0	0.0	.	13	.	.	Atlas-SNP
ADA	100	hgsc.bcm.edu	hg19	20	43257689	43257689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	ADA,NS,carcinoma,0,1	ADA	NM_000022	exon3	c.G217A	p.A73T	CTCACGCGATAGC	.	48.0	3.0	93.0	0.0	.	42	.	.	Atlas-SNP
PABPC1L	80336	hgsc.bcm.edu	hg19	20	43552887	43552887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PABPC1L	NM_001124756	exon7	c.C962T	p.T321I	TAATTACCAGTGC	.	44.0	4.0	63.0	0.0	.	59	.	.	Atlas-SNP
EPPIN-WFDC6	100526773	hgsc.bcm.edu	hg19	20	44171499	44171499	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	SPINLW1_ENST00000336443,NS,carcinoma,0,5	.	NM_001198986	exon3	c.C231A	p.C77X	CATTTCGCATACA	.	125.0	0.0	162.0	1.0	.	.	.	.	Atlas-SNP
STAU1	6780	hgsc.bcm.edu	hg19	20	47739657	47739657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STAU1	NM_017453	exon8	c.T938C	p.L313P	CGCGGGAGGCCTC	.	92.0	4.0	166.0	0.0	.	54	.	.	Atlas-SNP
NFATC2	4773	hgsc.bcm.edu	hg19	20	50071199	50071199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NFATC2	NM_012340	exon6	c.A1735G	p.M579V	CAACCATGGGCAG	.	98.0	5.0	120.0	0.0	.	112	.	.	Atlas-SNP
CASS4	57091	hgsc.bcm.edu	hg19	20	55027971	55027971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CASS4	NM_020356	exon5	c.T1739C	p.V580A	CCATTGTCATTGC	.	111.0	7.0	163.0	0.0	.	121	.	.	Atlas-SNP
BMP7	655	hgsc.bcm.edu	hg19	20	55758796	55758796	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BMP7	NM_001719	exon4	c.C940A	p.R314R	CCATCCGCAGGGC	.	48.0	4.0	70.0	0.0	.	60	.	.	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	hg19	20	60891820	60891820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LAMA5	NM_005560	exon57	c.C7663T	p.R2555W	CCTGCCGCACCAC	.	60.0	5.0	69.0	0.0	.	268	.	.	Atlas-SNP
YTHDF1	54915	hgsc.bcm.edu	hg19	20	61835053	61835053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	YTHDF1	NM_017798	exon4	c.A239G	p.D80G	GGAGGGTCCCCTG	.	115.0	5.0	170.0	0.0	.	66	.	.	Atlas-SNP
CHRNA4	1137	hgsc.bcm.edu	hg19	20	61981085	61981085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CHRNA4	NM_000744	exon5	c.C1678A	p.L560M	GCGACAGGGGCAG	.	87.0	4.0	61.0	0.0	.	98	.	.	Atlas-SNP
NRIP1	8204	hgsc.bcm.edu	hg19	21	16337049	16337049	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NRIP1	NM_003489	exon4	c.A3465G	p.K1155K	TGATTCTTTCTTT	.	85.0	4.0	110.0	0.0	.	103	.	.	Atlas-SNP
TIAM1	7074	hgsc.bcm.edu	hg19	21	32639207	32639207	+	Missense_Mutation	SNP	G	G	T	rs371962651	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TIAM1	NM_003253	exon5	c.C82A	p.R28S	GGGAGCGGGAAGT	.	70.0	4.0	91.0	0.0	.	522	.	.	Atlas-SNP
SYNJ1	8867	hgsc.bcm.edu	hg19	21	34056410	34056410	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYNJ1	NM_203446	exon10	c.C1255T	p.R419X	TTGTTCGAACTGT	.	95.0	4.0	158.0	0.0	.	253	.	.	Atlas-SNP
ITSN1	6453	hgsc.bcm.edu	hg19	21	35140133	35140133	+	Splice_Site	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ITSN1	NM_003024	exon11	c.1042+1G>T	.	TACCTGGTAAGGC	.	81.0	4.0	153.0	0.0	.	166	.	.	Atlas-SNP
ITSN1	6453	hgsc.bcm.edu	hg19	21	35255856	35255856	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ITSN1	NM_003024	exon36	c.T4557C	p.P1519P	CCAGCCTATTTTC	.	100.0	4.0	161.0	0.0	.	166	.	.	Atlas-SNP
PWP2	5822	hgsc.bcm.edu	hg19	21	45548277	45548277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PWP2	NM_005049	exon19	c.A2509G	p.R837G	AAGTCCAGGTAGA	.	89.0	4.0	120.0	0.0	.	64	.	.	Atlas-SNP
PFKL	5211	hgsc.bcm.edu	hg19	21	45744485	45744485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PFKL	NM_002626	exon17	c.G1762T	p.G588W	GCTGTGGGGGCCG	.	95.0	5.0	148.0	0.0	.	65	.	.	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	hg19	21	47704014	47704014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MCM3AP	NM_003906	exon1	c.A1187G	p.E396G	TCTTCCTCTTTAT	.	91.0	4.0	165.0	0.0	.	146	.	.	Atlas-SNP
MRPL40	64976	hgsc.bcm.edu	hg19	22	19423190	19423190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MRPL40	NM_003776	exon4	c.A326G	p.E109G	CCTTTGAGGAGAC	.	99.0	5.0	123.0	0.0	.	13	.	.	Atlas-SNP
PI4KA	5297	hgsc.bcm.edu	hg19	22	21159287	21159287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PI4KA	NM_058004	exon11	c.G1335T	p.M445I	CCACACCATGAGG	.	94.0	4.0	135.0	0.0	.	313	.	.	Atlas-SNP
IGLL1	3543	hgsc.bcm.edu	hg19	22	23922198	23922198	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IGLL1	NM_020070	exon1	c.G180A	p.R60R	GCTGGACCGGCTG	.	60.0	4.0	83.0	0.0	.	27	.	.	Atlas-SNP
CABIN1	23523	hgsc.bcm.edu	hg19	22	24455827	24455827	+	Splice_Site	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CABIN1	NM_001201429	exon10	c.1249+1G>A	.	AATCTGGTAGGAA	.	72.0	4.0	132.0	0.0	.	153	.	.	Atlas-SNP
FAM211B	388886	hgsc.bcm.edu	hg19	22	24981864	24981864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_207644	exon4	c.G938T	p.C313F	CTGGCACAGCAGG	.	64.0	4.0	59.0	0.0	.	.	.	.	Atlas-SNP
HORMAD2	150280	hgsc.bcm.edu	hg19	22	30517682	30517682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HORMAD2	NM_152510	exon9	c.G472T	p.V158F	GCCAGTGTTCTAC	.	225.0	60.0	301.0	0.0	.	12	.	.	Atlas-SNP
TBC1D10A	83874	hgsc.bcm.edu	hg19	22	30688656	30688656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D10A	NM_001204240	exon9	c.T1256C	p.L419P	AGGGGCAGGCGGA	.	76.0	4.0	94.0	0.0	.	49	.	.	Atlas-SNP
EIF4ENIF1	56478	hgsc.bcm.edu	hg19	22	31851919	31851919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EIF4ENIF1	NM_019843	exon8	c.T1018C	p.W340R	AGAACCACCTACT	.	104.0	5.0	129.0	0.0	.	80	.	.	Atlas-SNP
SFI1	9814	hgsc.bcm.edu	hg19	22	31927044	31927044	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SFI1	NM_001007467	exon4	c.A267G	p.R89R	TTTCAGATGCGTG	.	93.0	4.0	139.0	0.0	.	78	.	.	Atlas-SNP
MYH9	4627	hgsc.bcm.edu	hg19	22	36684860	36684860	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYH9	NM_002473	exon33	c.C4683T	p.N1561N	CTGCAGGTTGACC	.	81.0	4.0	136.0	0.0	.	225	.	.	Atlas-SNP
SUN2	25777	hgsc.bcm.edu	hg19	22	39136284	39136284	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SUN2	NM_001199579	exon12	c.C1407A	p.A469A	CCGCACGGCCTGG	.	87.0	4.0	140.0	0.0	.	59	.	.	Atlas-SNP
CBX6	23466	hgsc.bcm.edu	hg19	22	39268185	39268185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CBX6	NM_014292	exon1	c.C11A	p.S4Y	ACTGCAGACAGCT	.	78.0	4.0	102.0	0.0	.	26	.	.	Atlas-SNP
SYNGR1	9145	hgsc.bcm.edu	hg19	22	39760240	39760240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYNGR1	NM_145738	exon1	c.C41T	p.S14L	ATCCTTCATGGAT	.	97.0	4.0	183.0	0.0	.	19	.	.	Atlas-SNP
SYNGR1	9145	hgsc.bcm.edu	hg19	22	39772194	39772194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYNGR1	NM_145738	exon3	c.T478C	p.F160L	TCCATCTTCACCT	.	115.0	5.0	199.0	0.0	.	19	.	.	Atlas-SNP
MGAT3	4248	hgsc.bcm.edu	hg19	22	39883578	39883578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MGAT3	NM_002409	exon2	c.T226C	p.S76P	CTCTACTCCCACT	.	50.0	4.0	53.0	0.0	.	65	.	.	Atlas-SNP
CACNA1I	8911	hgsc.bcm.edu	hg19	22	40068952	40068952	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CACNA1I	NM_021096	exon28	c.4650-2A>G	.	CTGAGCAGATGGA	.	91.0	4.0	160.0	0.0	.	264	.	.	Atlas-SNP
FAM83F	113828	hgsc.bcm.edu	hg19	22	40417619	40417619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM83F	NM_138435	exon4	c.T1105C	p.W369R	TCGGCCTGGCGCC	.	29.0	4.0	36.0	0.0	.	29	.	.	Atlas-SNP
FAM83F	113828	hgsc.bcm.edu	hg19	22	40417665	40417665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM83F	NM_138435	exon4	c.T1151C	p.V384A	AGCAGGTGCTGCC	.	88.0	5.0	118.0	0.0	.	29	.	.	Atlas-SNP
SLC25A17	10478	hgsc.bcm.edu	hg19	22	41173121	41173121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC25A17	NM_006358	exon7	c.T616C	p.F206L	TGATGAACACATC	.	63.0	5.0	103.0	0.0	.	25	.	.	Atlas-SNP
PKDREJ	10343	hgsc.bcm.edu	hg19	22	46656423	46656423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PKDREJ	NM_006071	exon1	c.A2797G	p.M933V	CTGTCATTCTGAA	.	84.0	6.0	114.0	0.0	.	195	.	.	Atlas-SNP
GTSE1	51512	hgsc.bcm.edu	hg19	22	46704325	46704325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GTSE1	NM_016426	exon4	c.A247G	p.T83A	TTGCCCACATCTG	.	80.0	4.0	128.0	0.0	.	100	.	.	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	hg19	22	46860155	46860155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CELSR1	NM_014246	exon2	c.T3632C	p.L1211P	TTCTCCAGGCGGA	.	100.0	4.0	149.0	0.0	.	242	.	.	Atlas-SNP
BRD1	23774	hgsc.bcm.edu	hg19	22	50181097	50181097	+	Missense_Mutation	SNP	C	C	A	rs140147452	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	BRD1_ENST00000342989,colon,carcinoma,-1,2	BRD1	NM_014577	exon7	c.G2405T	p.R802L	GTGCTCCGCGACC	.	59.0	4.0	81.0	0.0	.	144	.	C|1.000;T|0.000	Atlas-SNP
TYMP	1890	hgsc.bcm.edu	hg19	22	50966131	50966131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TYMP	NM_001257989	exon5	c.G532T	p.D178Y	CCTGGTCCAGCAG	.	96.0	4.0	119.0	0.0	.	25	.	.	Atlas-SNP
TYMP	1890	hgsc.bcm.edu	hg19	22	50968110	50968110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TYMP	NM_001257989	exon2	c.G29T	p.G10V	GGGGCCCCGGTTC	.	99.0	4.0	174.0	0.0	.	25	.	.	Atlas-SNP
CPT1B	1375	hgsc.bcm.edu	hg19	22	51011460	51011460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CPT1B	NM_001145135	exon11	c.T1196C	p.F399S	CTAAAGAAGGCCT	.	42.0	4.0	62.0	0.0	.	61	.	.	Atlas-SNP
ARSA	410	hgsc.bcm.edu	hg19	22	51063861	51063861	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARSA	NM_001085426	exon9	c.T1242C	p.P414P	GCAGGCAGGGTCT	.	91.0	5.0	147.0	0.0	.	19	.	.	Atlas-SNP
P2RY8	286530	hgsc.bcm.edu	hg19	X	1585322	1585322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	P2RY8	NM_178129	exon2	c.T130C	p.S44P	ACAGAGAGAAGAG	.	100.0	4.0	94.0	0.0	.	53	.	.	Atlas-SNP
ARSD	414	hgsc.bcm.edu	hg19	X	2825611	2825611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARSD	NM_001669	exon10	c.T1483C	p.C495R	CGTAGCAGGCCCC	.	99.0	5.0	73.0	0.0	.	47	.	.	Atlas-SNP
AMELX	265	hgsc.bcm.edu	hg19	X	11316394	11316394	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AMELX	NM_182680	exon5	c.A183G	p.P61P	AAGGCCACCGGTA	.	77.0	4.0	103.0	0.0	.	31	.	.	Atlas-SNP
PCYT1B	9468	hgsc.bcm.edu	hg19	X	24605380	24605380	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCYT1B	NM_004845	exon5	c.T543C	p.V181V	CTTGTAAACATCA	.	90.0	4.0	101.0	0.0	.	88	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32509552	32509552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DMD	NM_004006	exon20	c.A2464G	p.R822G	TAAGTCTCTCACT	.	84.0	4.0	89.0	0.0	.	2127	.	.	Atlas-SNP
USP11	8237	hgsc.bcm.edu	hg19	X	47098823	47098823	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP11	NM_004651	exon3	c.G489A	p.W163X	TGCTTGGCATTAC	.	90.0	4.0	61.0	0.0	.	93	.	.	Atlas-SNP
ARAF	369	hgsc.bcm.edu	hg19	X	47426698	47426698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARAF	NM_001256196	exon10	c.A952G	p.R318G	CTGAAGAGGATCG	.	125.0	5.0	116.0	0.0	.	67	.	.	Atlas-SNP
SYN1	6853	hgsc.bcm.edu	hg19	X	47434132	47434132	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYN1	NM_006950	exon11	c.C1348T	p.Q450X	GCTGCTGGGAGGT	.	64.0	4.0	71.0	0.0	.	84	.	.	Atlas-SNP
GATA1	2623	hgsc.bcm.edu	hg19	X	48650745	48650745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GATA1	NM_002049	exon4	c.T614C	p.V205A	AGTGTGTGAACTG	.	113.0	5.0	113.0	0.0	.	342	.	.	Atlas-SNP
TFE3	7030	hgsc.bcm.edu	hg19	X	48896668	48896668	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TFE3	NM_006521	exon3	c.T498C	p.R166R	GGGTGGACGGCTC	.	147.0	6.0	181.0	0.0	.	93	.	.	Atlas-SNP
CACNA1F	778	hgsc.bcm.edu	hg19	X	49061725	49061725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CACNA1F	NM_005183	exon48	c.A5806G	p.M1936V	TGTCCATCTCATC	.	88.0	5.0	90.0	0.0	.	218	.	.	Atlas-SNP
TSPYL2	64061	hgsc.bcm.edu	hg19	X	53114011	53114011	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TSPYL2	NM_022117	exon3	c.C960T	p.N320N	CACAAACATGGTG	.	91.0	4.0	128.0	0.0	.	53	.	.	Atlas-SNP
ARHGEF9	23229	hgsc.bcm.edu	hg19	X	62917040	62917040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARHGEF9	NM_015185	exon4	c.C526A	p.H176N	TGAGGTGGGGGTC	.	129.0	6.0	117.0	0.0	.	117	.	.	Atlas-SNP
STARD8	9754	hgsc.bcm.edu	hg19	X	67938076	67938076	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STARD8	NM_001142503	exon6	c.T1320C	p.A440A	TGAGGCTCTCAGC	.	118.0	5.0	143.0	0.0	.	282	.	.	Atlas-SNP
EDA	1896	hgsc.bcm.edu	hg19	X	69247861	69247861	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EDA	NM_001399	exon4	c.A681G	p.G227G	TCAAGGACCCCCT	.	82.0	4.0	66.0	0.0	.	61	.	.	Atlas-SNP
ERCC6L	54821	hgsc.bcm.edu	hg19	X	71426582	71426582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ERCC6L	NM_017669	exon2	c.A2035G	p.T679A	CACATGTGTACAT	.	85.0	4.0	79.0	0.0	.	98	.	.	Atlas-SNP
PHKA1	5255	hgsc.bcm.edu	hg19	X	71822975	71822975	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PHKA1	NM_002637	exon26	c.C2911T	p.R971X	CGCTTCGTTCCAC	.	71.0	4.0	79.0	0.0	.	129	.	.	Atlas-SNP
ATP7A	538	hgsc.bcm.edu	hg19	X	77258577	77258577	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATP7A	NM_000052	exon6	c.T1551C	p.Y517Y	AATATATTCTATA	.	82.0	4.0	113.0	0.0	.	248	.	.	Atlas-SNP
SRPX2	27286	hgsc.bcm.edu	hg19	X	99901349	99901349	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SRPX2	NM_014467	exon2	c.T30C	p.A10A	AGGAGCTCTCTTT	.	71.0	4.0	49.0	0.0	.	41	.	.	Atlas-SNP
PLS3	5358	hgsc.bcm.edu	hg19	X	114883870	114883870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLS3	NM_005032	exon16	c.A1882G	p.K628E	GGAATGAAGAGAG	.	100.0	4.0	103.0	0.0	.	60	.	.	Atlas-SNP
KLHL13	90293	hgsc.bcm.edu	hg19	X	117053532	117053532	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHL13	NM_001168299	exon5	c.A531G	p.L177L	AATCTGTAGGAAA	.	94.0	6.0	345.0	0.0	.	87	.	.	Atlas-SNP
THOC2	57187	hgsc.bcm.edu	hg19	X	122760485	122760485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	THOC2	NM_001081550	exon24	c.A2786G	p.E929G	CAGCGCTCCTTCT	.	98.0	4.0	90.0	0.0	.	310	.	.	Atlas-SNP
ZDHHC9	51114	hgsc.bcm.edu	hg19	X	128947657	128947657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZDHHC9	NM_001008222	exon6	c.G670A	p.G224R	ATGTTCCAGGAGT	.	72.0	4.0	62.0	0.0	.	41	.	.	Atlas-SNP
IGSF1	3547	hgsc.bcm.edu	hg19	X	130408626	130408626	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IGSF1	NM_001170961	exon18	c.A3713T	p.Y1238F	TCAGGGTAGGCCT	.	140.0	11.0	187.0	0.0	.	231	.	.	Atlas-SNP
HS6ST2	90161	hgsc.bcm.edu	hg19	X	131763092	131763092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HS6ST2	NM_001077188	exon6	c.A1097G	p.D366G	ACTGGGTCTCGGA	.	103.0	5.0	98.0	0.0	.	89	.	.	Atlas-SNP
PLXNA3	55558	hgsc.bcm.edu	hg19	X	153699869	153699869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLXNA3	NM_017514	exon32	c.A5408G	p.D1803G	TCAGCGACCAGGA	.	78.0	4.0	92.0	0.0	.	156	.	.	Atlas-SNP
IKBKG	8517	hgsc.bcm.edu	hg19	X	153770550	153770550	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IKBKG	NM_001099856	exon1	c.T72C	p.S24S	TCCCAGTCTCTTC	.	79.0	5.0	112.0	0.0	.	17	.	.	Atlas-SNP
KLHL13	90293	hgsc.bcm.edu	hg19	X	117053530	117053536	+	Frame_Shift_Del	DEL	TGTAGGA	TGTAGGA	-	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	TGTAGGA	TGTAGGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHL13	NM_001168299	exon5	c.528_534del	p.176_178del	.	.	165.0	69.0	342.0	0.0	.	87	.	.	Atlas-Indel,Pindel
COMMD5	28991	hgsc.bcm.edu	hg19	8	146076649	146076650	+	In_Frame_Ins	INS	-	-	AAGAAACTCACTCGGCCA	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COMMD5	NM_001081004	exon2	c.75_76insTGGCCGAGTGAGTTTCTT	p.L25delinsFGRVSFL	.	.	71.0	16.0	92.0	0.0	.	18	.	.	Pindel