Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm SH3GLB1 51100 hgsc.bcm.edu hg19 1 87170595 87170595 + Missense_Mutation SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . SH3GLB1 NM_001206652 exon1 c.G13A p.D5N ATCATGGACTTCA . 13.0 8.0 4.0 0.0 . 57 . . Atlas-SNP FLG2 388698 hgsc.bcm.edu hg19 1 152327575 152327575 + Missense_Mutation SNP C C T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b .,1 FLG2 NM_001014342 exon3 c.G2687A p.G896D CCAAAGCCACTGG . 162.0 30.0 152.0 0.0 . 431 . . Atlas-SNP S100A7 6278 hgsc.bcm.edu hg19 1 153430321 153430321 + Missense_Mutation SNP C C A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . S100A7 NM_002963 exon3 c.G267T p.Q89H ATGGCTCTGCTTG . 199.0 35.0 199.0 0.0 . 23 . . Atlas-SNP DUSP27 92235 hgsc.bcm.edu hg19 1 167096333 167096333 + Silent SNP G G C novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . DUSP27 NM_001080426 exon5 c.G1965C p.G655G CAGCGGGAGCATT . 92.0 17.0 69.0 0.0 . 235 . . Atlas-SNP FAIM3 9214 hgsc.bcm.edu hg19 1 207083133 207083133 + Missense_Mutation SNP G G T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . FAIM3 NM_005449 exon6 c.C922A p.P308T AGCGCGGTCGCGG . 8.0 7.0 0.0 0.0 . 36 . . Atlas-SNP USH2A 7399 hgsc.bcm.edu hg19 1 215932017 215932017 + Nonsense_Mutation SNP G G C novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . USH2A NM_206933 exon58 c.C11309G p.S3770X GGTGTTGACATAG . 82.0 12.0 94.0 0.0 . 1168 . . Atlas-SNP USH2A 7399 hgsc.bcm.edu hg19 1 216495239 216495239 + Missense_Mutation SNP T T C novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . USH2A NM_007123 exon9 c.A1630G p.T544A CTTCAGTGAAGCT . 121.0 92.0 172.0 0.0 . 1168 . . Atlas-SNP SMC6 79677 hgsc.bcm.edu hg19 2 17877588 17877588 + Nonsense_Mutation SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . SMC6 NM_001142286 exon22 c.C2500T p.R834X GTTCTCGTTTCTT . 111.0 18.0 139.0 0.0 . 102 . . Atlas-SNP DPYSL5 56896 hgsc.bcm.edu hg19 2 27156166 27156166 + Missense_Mutation SNP C C T rs372829541 TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b DPYSL5,NS,carcinoma,0,1 DPYSL5 NM_001253724 exon7 c.C755T p.S252L GTATCTCGGCTGG . 118.0 55.0 119.0 0.0 . 69 . . Atlas-SNP PLB1 151056 hgsc.bcm.edu hg19 2 28825786 28825786 + Silent SNP C C T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . PLB1 NM_153021 exon39 c.C2772T p.A924A GCAGGCCAGGTAG . 29.0 11.0 30.0 0.0 . 255 . . Atlas-SNP THADA 63892 hgsc.bcm.edu hg19 2 43458154 43458154 + Missense_Mutation SNP A A C novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . THADA NM_001083953 exon38 c.T5795G p.L1932R ACACTGAGAACTA . 132.0 65.0 104.0 0.0 . 131 . . Atlas-SNP CLEC4F 165530 hgsc.bcm.edu hg19 2 71043685 71043685 + Silent SNP A A G novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . CLEC4F NM_173535 exon4 c.T828C p.N276N CAAACTATTTCTT . 208.0 110.0 250.0 0.0 . 95 . . Atlas-SNP DYSF 8291 hgsc.bcm.edu hg19 2 71892431 71892431 + Missense_Mutation SNP A A G novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . DYSF NM_001130987 exon47 c.A5314G p.I1772V GAAGAGATAGGTG . 59.0 33.0 48.0 0.0 . 536 . . Atlas-SNP HK2 3099 hgsc.bcm.edu hg19 2 75113781 75113781 + Missense_Mutation SNP C C T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . HK2 NM_000189 exon15 c.C2200T p.L734F CTTTCACTCAACC . 51.0 27.0 49.0 0.0 . 85 . . Atlas-SNP TGFBRAP1 9392 hgsc.bcm.edu hg19 2 105885897 105885897 + Silent SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . TGFBRAP1 NM_004257 exon11 c.C2238T p.T746T AAATTCGGTGGCG . 110.0 40.0 90.0 0.0 . 70 . . Atlas-SNP CDCA7 83879 hgsc.bcm.edu hg19 2 174231134 174231134 + Missense_Mutation SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . CDCA7 NM_031942 exon8 c.G1159A p.E387K GGTGAAGAGGTCA . 94.0 28.0 88.0 0.0 . 48 . . Atlas-SNP PBRM1 55193 hgsc.bcm.edu hg19 3 52584506 52584506 + Missense_Mutation SNP A A G novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . PBRM1 NM_018313 exon29 c.T4507C p.Y1503H TCAGGTAGGCCTC . 35.0 28.0 49.0 0.0 . 1252 . . Atlas-SNP FILIP1L 11259 hgsc.bcm.edu hg19 3 99643072 99643072 + Splice_Site SNP A A G novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . FILIP1L NM_182909 exon5 c.605+2T>C . AGCCTTACCTTTC . 192.0 37.0 189.0 0.0 . 154 . . Atlas-SNP SLCO2A1 6578 hgsc.bcm.edu hg19 3 133654650 133654650 + Silent SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . SLCO2A1 NM_005630 exon13 c.C1782T p.C594C GTAGGCGCAGGCC . 118.0 33.0 115.0 0.0 . 72 . . Atlas-SNP MRFAP1 93621 hgsc.bcm.edu hg19 4 6642727 6642727 + Silent SNP C C T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . MRFAP1 NM_001272053 exon2 c.C138T p.H46H CGAGCACGGGCGG . 118.0 89.0 98.0 0.0 . 10 . . Atlas-SNP LAP3 51056 hgsc.bcm.edu hg19 4 17579110 17579110 + Missense_Mutation SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . LAP3 NM_015907 exon1 c.G22A p.A8T CTTCCGGCTGCGG . 76.0 13.0 17.0 0.0 . 50 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79366872 79366872 + Missense_Mutation SNP G G C novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . FRAS1 NM_001166133 exon42 c.G5862C p.K1954N GGTAAAGACTTTG . 148.0 21.0 148.0 0.0 . 779 . . Atlas-SNP FHDC1 85462 hgsc.bcm.edu hg19 4 153896719 153896719 + Missense_Mutation SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . FHDC1 NM_033393 exon11 c.G2276A p.S759N TGGGTAGCAGCGA . 78.0 17.0 67.0 0.0 . 102 . . Atlas-SNP ASIC5 51802 hgsc.bcm.edu hg19 4 156784657 156784657 + Missense_Mutation SNP T T A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . . NM_017419 exon2 c.A290T p.E97V TGAACCTCAATGG . 104.0 19.0 99.0 0.0 . . . . Atlas-SNP PRKAA1 5562 hgsc.bcm.edu hg19 5 40777637 40777637 + Missense_Mutation SNP C C T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . PRKAA1 NM_006251 exon2 c.G179A p.R60Q TTCTGTCGATTGA . 271.0 28.0 198.0 0.0 . 27 . . Atlas-SNP ABCC10 89845 hgsc.bcm.edu hg19 6 43406411 43406411 + Missense_Mutation SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . ABCC10 NM_001198934 exon8 c.G2005A p.A669T GGCCTGGCCACCC . 103.0 19.0 41.0 0.0 . 118 . . Atlas-SNP SESN1 27244 hgsc.bcm.edu hg19 6 109315748 109315748 + Missense_Mutation SNP C C A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . SESN1 NM_014454 exon6 c.G1037T p.R346L TCATCTCGACATT . 54.0 17.0 85.0 0.0 . 29 . . Atlas-SNP SNX8 29886 hgsc.bcm.edu hg19 7 2302995 2302995 + Missense_Mutation SNP G G T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . SNX8 NM_013321 exon7 c.C785A p.A262E CCTATTGCACTGA . 36.0 16.0 41.0 0.0 . 46 . . Atlas-SNP SP4 6671 hgsc.bcm.edu hg19 7 21470288 21470288 + Missense_Mutation SNP G G C novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . SP4 NM_003112 exon3 c.G1505C p.S502T CTTCAAGTGGTGG . 172.0 94.0 143.0 0.0 . 91 . . Atlas-SNP ZNF777 27153 hgsc.bcm.edu hg19 7 149152627 149152627 + Missense_Mutation SNP C C G novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . ZNF777 NM_015694 exon2 c.G487C p.D163H GGGTGTCCTTTTG . 72.0 31.0 60.0 0.0 . 63 . . Atlas-SNP CPA6 57094 hgsc.bcm.edu hg19 8 68658311 68658311 + Nonsense_Mutation SNP G G T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . CPA6 NM_020361 exon1 c.C54A p.C18X GAGCCAGCAAAGA . 75.0 28.0 88.0 0.0 . 69 . . Atlas-SNP DCSTAMP 81501 hgsc.bcm.edu hg19 8 105361092 105361092 + Silent SNP G G T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . . NM_001257317 exon2 c.G312T p.G104G CACAGGGATCGTC . 155.0 25.0 121.0 0.0 . . . . Atlas-SNP PKHD1L1 93035 hgsc.bcm.edu hg19 8 110495324 110495324 + Missense_Mutation SNP T T A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . PKHD1L1 NM_177531 exon57 c.T9566A p.V3189E ATGCTGTGGATTG . 134.0 35.0 102.0 0.0 . 522 . . Atlas-SNP ATAD2 29028 hgsc.bcm.edu hg19 8 124361670 124361670 + Missense_Mutation SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . ATAD2 NM_014109 exon14 c.C1661T p.T554I AGCAGGGTGGAAA . 59.0 31.0 51.0 0.0 . 160 . . Atlas-SNP DGAT1 8694 hgsc.bcm.edu hg19 8 145540267 145540267 + Missense_Mutation SNP C C T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . DGAT1 NM_012079 exon17 c.G1417A p.V473I CGTGGACGTACAT . 69.0 40.0 37.0 0.0 . 26 . . Atlas-SNP MPDZ 8777 hgsc.bcm.edu hg19 9 13109010 13109010 + Missense_Mutation SNP T T A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . MPDZ NM_003829 exon45 c.A5904T p.L1968F GAAGCCTAAGCCA . 59.0 31.0 51.0 0.0 . 324 . . Atlas-SNP ABCA1 19 hgsc.bcm.edu hg19 9 107547843 107547843 + Missense_Mutation SNP C C G novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . ABCA1 NM_005502 exon49 c.G6479C p.G2160A GCAAGTCCAAAGA . 60.0 7.0 84.0 0.0 . 244 . . Atlas-SNP SEC16A 9919 hgsc.bcm.edu hg19 9 139370175 139370175 + Silent SNP C C A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . SEC16A NM_014866 exon3 c.G1893T p.V631V ACCAACCACGTTG . 45.0 33.0 66.0 0.0 . 249 . . Atlas-SNP ANKRD30A 91074 hgsc.bcm.edu hg19 10 37506693 37506693 + Silent SNP T T C novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . ANKRD30A NM_052997 exon33 c.T2986C p.L996L GAAGAATTAGGAA . 217.0 46.0 279.0 0.0 . 448 . . Atlas-SNP HERC4 26091 hgsc.bcm.edu hg19 10 69797855 69797855 + Missense_Mutation SNP G G C novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . HERC4 NM_022079 exon5 c.C458G p.S153C CCTTTAGAAAGTG . 125.0 27.0 158.0 0.0 . 78 . . Atlas-SNP FGFR2 2263 hgsc.bcm.edu hg19 10 123325033 123325033 + Missense_Mutation SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . FGFR2 NM_022970 exon3 c.C295T p.P99S CTCTAGGCGTGGC . 78.0 44.0 75.0 0.0 . 758 . . Atlas-SNP TACC2 10579 hgsc.bcm.edu hg19 10 123843951 123843951 + Missense_Mutation SNP G G T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . TACC2 NM_206862 exon4 c.G1936T p.G646W ACGGACGGGCCCC . 30.0 16.0 32.0 0.0 . 271 . . Atlas-SNP MUC5B 727897 hgsc.bcm.edu hg19 11 1277989 1277989 + Missense_Mutation SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . MUC5B NM_002458 exon39 c.G16225A p.V5409M ATCTGCGTGCAGG . 39.0 10.0 23.0 0.0 . 473 . . Atlas-SNP STIM1 6786 hgsc.bcm.edu hg19 11 4076832 4076832 + Missense_Mutation SNP C C A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . STIM1 NM_003156 exon4 c.C462A p.F154L GACCTTCCGGAAG . 123.0 17.0 112.0 0.0 . 55 . . Atlas-SNP APBB1 322 hgsc.bcm.edu hg19 11 6422643 6422643 + Missense_Mutation SNP C C G rs142613637 TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . APBB1 NM_001164 exon10 c.G1520C p.R507P GCATTACGCCGTT . 38.0 16.0 48.0 0.0 . 73 . C|1.000;G|0.000 Atlas-SNP OR2D3 120775 hgsc.bcm.edu hg19 11 6942827 6942827 + Missense_Mutation SNP G G T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . OR2D3 NM_001004684 exon1 c.G595T p.A199S CCTCCTGCCCTCC . 264.0 135.0 249.0 0.0 . 51 . . Atlas-SNP HPS5 11234 hgsc.bcm.edu hg19 11 18333521 18333521 + Silent SNP T T C novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . HPS5 NM_181507 exon3 c.A159G p.G53G TCCTCCTCCTGAA . 59.0 12.0 57.0 0.0 . 70 . . Atlas-SNP SLC35C1 55343 hgsc.bcm.edu hg19 11 45832329 45832329 + Missense_Mutation SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . SLC35C1 NM_018389 exon2 c.G538A p.G180S GCAGGGGGCTTCT . 54.0 17.0 30.0 0.0 . 23 . . Atlas-SNP SUV420H1 51111 hgsc.bcm.edu hg19 11 67925241 67925241 + Missense_Mutation SNP A A C novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . SUV420H1 NM_017635 exon11 c.T2572G p.L858V ACCTCAAGCGCTT . 178.0 101.0 135.0 0.0 . 125 . . Atlas-SNP RARG 5916 hgsc.bcm.edu hg19 12 53607025 53607025 + Missense_Mutation SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b RARG,NS,carcinoma,0,1 RARG NM_000966 exon9 c.C1021T p.R341C CCATGCGGTCTAT . 67.0 35.0 36.0 0.0 . 53 . . Atlas-SNP PIWIL1 9271 hgsc.bcm.edu hg19 12 130827612 130827612 + Missense_Mutation SNP G G C novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . PIWIL1 NM_004764 exon3 c.G156C p.Q52H ACGGCAGAGAGGA . 218.0 35.0 167.0 0.0 . 157 . . Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103392139 103392139 + Missense_Mutation SNP G G T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . . NM_001146197 exon4 c.C10908A p.F3636L CAATTTGAAGTGA . 192.0 76.0 177.0 0.0 . . . . Atlas-SNP KTN1 3895 hgsc.bcm.edu hg19 14 56079097 56079097 + Missense_Mutation SNP G G T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . KTN1 NM_004986 exon2 c.G331T p.V111F AGTAGTGTTAGGG . 157.0 49.0 119.0 0.0 . 147 . . Atlas-SNP RIN3 79890 hgsc.bcm.edu hg19 14 93118817 93118817 + Missense_Mutation SNP C C T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . RIN3 NM_024832 exon6 c.C1423T p.P475S ACCCTCCCAGCTC . 28.0 23.0 57.0 0.0 . 81 . . Atlas-SNP OR4N4 283694 hgsc.bcm.edu hg19 15 22382912 22382912 + Missense_Mutation SNP C C T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b OR4N4,NS,carcinoma,0,1 OR4N4 NM_001005241 exon1 c.C440T p.A147V TGTTGGCTCTGTG . 393.0 26.0 352.0 1.0 . 108 . . Atlas-SNP TRIP4 9325 hgsc.bcm.edu hg19 15 64698610 64698610 + Missense_Mutation SNP A A G novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . TRIP4 NM_016213 exon6 c.A779G p.E260G GTCTGGAGAAGGC . 113.0 24.0 98.0 0.0 . 43 . . Atlas-SNP NLRC3 197358 hgsc.bcm.edu hg19 16 3613089 3613089 + Missense_Mutation SNP C C T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . NLRC3 NM_178844 exon5 c.G1849A p.E617K TGGCCTCCTGGGC . 58.0 40.0 21.0 0.0 . 103 . . Atlas-SNP STX4 6810 hgsc.bcm.edu hg19 16 31045531 31045531 + Silent SNP C C T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . STX4 NM_001272096 exon4 c.C111T p.L37L CCCTCTCGGTCAC . 60.0 32.0 75.0 0.0 . 28 . . Atlas-SNP N4BP1 9683 hgsc.bcm.edu hg19 16 48595690 48595690 + Silent SNP A A T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . N4BP1 NM_153029 exon2 c.T864A p.S288S AGAATCAGAAAAT . 67.0 44.0 98.0 0.0 . 121 . . Atlas-SNP MT1F 4494 hgsc.bcm.edu hg19 16 56692645 56692645 + Silent SNP C C T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . MT1F NM_005949 exon2 c.C87T p.C29C CTCCTGCAAGAAG . 42.0 25.0 54.0 0.0 . 3 . . Atlas-SNP KDM6B 23135 hgsc.bcm.edu hg19 17 7755291 7755291 + Silent SNP C C T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . KDM6B NM_001080424 exon18 c.C4188T p.F1396F CAACTTCTGCTCC . 89.0 14.0 79.0 0.0 . 95 . . Atlas-SNP ENTHD2 146705 hgsc.bcm.edu hg19 17 79203158 79203158 + Missense_Mutation SNP G G C novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . . NM_144679 exon12 c.C1148G p.P383R GGGAGAGGCACAG . 101.0 40.0 138.0 0.0 . . . . Atlas-SNP KCNN1 3780 hgsc.bcm.edu hg19 19 18092829 18092829 + Silent SNP G G A rs374014650 TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . KCNN1 NM_002248 exon5 c.G810A p.T270T CAACACGCGCTTC . 100.0 17.0 35.0 0.0 . 74 . . Atlas-SNP MED25 81857 hgsc.bcm.edu hg19 19 50331706 50331706 + Missense_Mutation SNP G G T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b MED25_ENST00000312881,NS,carcinoma,0,2 MED25 NM_030973 exon4 c.G306T p.K102N CTGCAGGTTCATG . 86.0 46.0 63.0 0.0 . 98 . . Atlas-SNP ZNF841 284371 hgsc.bcm.edu hg19 19 52570784 52570784 + Missense_Mutation SNP C C A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . ZNF841 NM_001136499 exon7 c.G351T p.M117I TTCCAACATCACT . 273.0 40.0 235.0 0.0 . 183 . . Atlas-SNP ZNF578 147660 hgsc.bcm.edu hg19 19 53014990 53014990 + Missense_Mutation SNP G G T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b ENSG00000221895,caecum,carcinoma,0,1 . NM_001099694 exon6 c.G1356T p.E452D TGGAGAGAAATCT . 128.0 41.0 89.0 0.0 . . . . Atlas-SNP ZIM3 114026 hgsc.bcm.edu hg19 19 57646911 57646911 + Missense_Mutation SNP G G C novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b ZIM3,NS,carcinoma,0,1 ZIM3 NM_052882 exon5 c.C794G p.S265C ATGCAGGATGATT . 224.0 31.0 181.0 1.0 . 107 . . Atlas-SNP ZSCAN4 201516 hgsc.bcm.edu hg19 19 58187569 58187569 + Missense_Mutation SNP G G A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . ZSCAN4 NM_152677 exon3 c.G56A p.G19E ATCTTGGATCAGA . 158.0 88.0 109.0 0.0 . 72 . . Atlas-SNP ZNF551 90233 hgsc.bcm.edu hg19 19 58199625 58199625 + Missense_Mutation SNP A A G novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . ZNF551 NM_138347 exon3 c.A1982G p.H661R TTCGACATCGGAG . 71.0 14.0 50.0 0.0 . 65 . . Atlas-SNP SAMSN1 64092 hgsc.bcm.edu hg19 21 15858388 15858388 + Missense_Mutation SNP C C A novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . SAMSN1 NM_001256370 exon9 c.G1171T p.D391Y AGATGTCTGAGCT . 149.0 37.0 137.0 0.0 . 112 . . Atlas-SNP IGSF5 150084 hgsc.bcm.edu hg19 21 41137531 41137531 + Missense_Mutation SNP G G T rs372378189 bycluster;alternate_allele TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b IGSF5,rectum,carcinoma,0,1 IGSF5 NM_001080444 exon3 c.G170T p.R57L AGGCTCGCTTCAA . 62.0 23.0 49.0 0.0 . 62 . . Atlas-SNP DCAF8L2 347442 hgsc.bcm.edu hg19 X 27765469 27765469 + Missense_Mutation SNP C C T novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . DCAF8L2 NM_001136533 exon1 c.C457T p.P153S GCGGGTCCACAAG . 68.0 60.0 86.0 0.0 . 79 . . Atlas-SNP UTP20 27340 hgsc.bcm.edu hg19 12 101736252 101736253 + Frame_Shift_Ins INS - - AC novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . UTP20 NM_014503 exon33 c.4130_4131insAC p.V1377fs . . 111.0 52.0 81.0 0.0 . 222 . . Atlas-Indel,Pindel CMAS 55907 hgsc.bcm.edu hg19 12 22199469 22199479 + Frame_Shift_Del DEL GCGGCCCTGGA GCGGCCCTGGA - novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 GCGGCCCTGGA GCGGCCCTGGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . CMAS NM_018686 exon1 c.231_241del p.77_81del . . 79.0 39.0 24.0 0.0 . 45 . . Atlas-Indel,Pindel BAP1 8314 hgsc.bcm.edu hg19 3 52442000 52442062 + In_Frame_Del DEL CCTTCATGCGACTCAGGGTGGGTCCCAGGTCCACGCTGCTGCAGTTCAGGAGCACGCTCAGCA CCTTCATGCGACTCAGGGTGGGTCCCAGGTCCACGCTGCTGCAGTTCAGGAGCACGCTCAGCA - novel TCGA-FV-A3I0-01A-11D-A22F-10 TCGA-FV-A3I0-11A-11D-A22F-10 CCTTCATGCGACTCAGGGTGGGTCCCAGGTCCACGCTGCTGCAGTTCAGGAGCACGCTCAGCA CCTTCATGCGACTCAGGGTGGGTCCCAGGTCCACGCTGCTGCAGTTCAGGAGCACGCTCAGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5df489bc-6178-49e4-8a42-506f70300dff 741183d6-2363-4cbf-b5f9-4548e1cab32b . BAP1 NM_004656 exon5 c.288_350del p.96_117del . . 40.0 21.0 122.0 0.0 . 371 . . Pindel