Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm HFE2 148738 hgsc.bcm.edu hg19 1 145414811 145414811 + Silent SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . HFE2 NM_213653 exon2 c.C30T p.P10P TAGTCCCAGGTCC . 80.0 22.0 60.0 0.0 . 48 . . Atlas-SNP CKS1B 1163 hgsc.bcm.edu hg19 1 154947279 154947279 + Nonsense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . CKS1B NM_001826 exon1 c.C58T p.R20X GAGTATCGGTTAG . 185.0 53.0 133.0 0.0 . 5 . . Atlas-SNP IFI16 3428 hgsc.bcm.edu hg19 1 158984635 158984635 + Missense_Mutation SNP G G C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . IFI16 NM_001206567 exon2 c.G165C p.K55N AGAAAAGTTCCGA . 271.0 64.0 258.0 0.0 . 111 . . Atlas-SNP RASAL2 9462 hgsc.bcm.edu hg19 1 178420786 178420786 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RASAL2 NM_170692 exon10 c.G1708A p.D570N CTGATAGACCATC . 54.0 19.0 66.0 0.0 . 334 . . Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21235442 21235442 + Nonsense_Mutation SNP G G T rs200708197 alternate_allele TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 APOB,NS,carcinoma,0,2 APOB NM_000384 exon26 c.C4298A p.S1433X ATATTCGAATCTA . 73.0 20.0 73.0 0.0 . 761 . G|0.999;A|0.001 Atlas-SNP MARCO 8685 hgsc.bcm.edu hg19 2 119739211 119739211 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MARCO NM_006770 exon10 c.C880T p.P294S GGTTTTCCTGGAG . 89.0 27.0 84.0 0.0 . 120 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179407524 179407524 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . TTN NM_001267550 exon348 c.G97057A p.V32353I CTGTGACACGCTC . 122.0 20.0 104.0 0.0 . 18412 . . Atlas-SNP MLPH 79083 hgsc.bcm.edu hg19 2 238434305 238434305 + Missense_Mutation SNP A A T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MLPH NM_001042467 exon7 c.A737T p.E246V TGGAGGAGGCTGA . 52.0 14.0 40.0 0.0 . 41 . . Atlas-SNP UCN2 90226 hgsc.bcm.edu hg19 3 48600437 48600437 + Nonsense_Mutation SNP G G A rs149022309 bycluster TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . UCN2 NM_033199 exon2 c.C121T p.R41X CAGGTCGGGGAGT . 71.0 17.0 74.0 0.0 . 4 . G|1.000;A|0.000 Atlas-SNP RNF123 63891 hgsc.bcm.edu hg19 3 49738928 49738928 + Missense_Mutation SNP G G T rs369164501 alternate_allele TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RNF123 NM_022064 exon16 c.G1282T p.D428Y AGCTTCGACGTGC . 37.0 12.0 32.0 0.0 . 100 . . Atlas-SNP C4orf51 646603 hgsc.bcm.edu hg19 4 146650321 146650321 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . C4orf51 NM_001080531 exon4 c.G367T p.A123S TTATAGGCACATC . 199.0 20.0 184.0 0.0 . 18 . . Atlas-SNP DAB2 1601 hgsc.bcm.edu hg19 5 39376177 39376177 + Silent SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . DAB2 NM_001343 exon13 c.C2169A p.S723S TGGCAGGGAAACT . 77.0 34.0 66.0 0.0 . 124 . . Atlas-SNP TMEM232 642987 hgsc.bcm.edu hg19 5 109941886 109941886 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . TMEM232 NM_001039763 exon9 c.C1005A p.S335R CATAATGCTTGAA . 143.0 22.0 129.0 0.0 . 57 . . Atlas-SNP RAPGEF6 51735 hgsc.bcm.edu hg19 5 130841171 130841171 + Missense_Mutation SNP A A T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RAPGEF6 NM_001164387 exon10 c.T987A p.S329R TGGATGACTGATT . 114.0 20.0 70.0 0.0 . 361 . . Atlas-SNP GRXCR2 643226 hgsc.bcm.edu hg19 5 145246178 145246178 + Missense_Mutation SNP C C G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . GRXCR2 NM_001080516 exon2 c.G450C p.E150D AGCCTCCTCTTCC . 131.0 30.0 91.0 0.0 . 32 . . Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 65300537 65300537 + Silent SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . EYS NM_001142800 exon26 c.T5223C p.D1741D AGAACTATCACTT . 125.0 21.0 128.0 0.0 . 527 . . Atlas-SNP UTRN 7402 hgsc.bcm.edu hg19 6 144783916 144783916 + Nonsense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . UTRN NM_007124 exon22 c.C2980T p.Q994X GATGTGCAAGGAA . 86.0 22.0 81.0 0.0 . 327 . . Atlas-SNP FSCN1 6624 hgsc.bcm.edu hg19 7 5645021 5645021 + Silent SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 FSCN1,caecum,carcinoma,0,1 FSCN1 NM_003088 exon5 c.C1398T p.G466G GGTGGGCGGGCGC . 50.0 12.0 55.0 0.0 . 29 . . Atlas-SNP METTL2B 55798 hgsc.bcm.edu hg19 7 128119304 128119304 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . METTL2B NM_018396 exon3 c.G295A p.E99K TTTACCGAATTCC . 250.0 41.0 238.0 0.0 . 34 . . Atlas-SNP TRAM1 23471 hgsc.bcm.edu hg19 8 71499196 71499196 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . TRAM1 NM_014294 exon8 c.A680G p.Y227C ACAAAATAATGTA . 114.0 22.0 102.0 0.0 . 33 . . Atlas-SNP ALDOB 229 hgsc.bcm.edu hg19 9 104192169 104192169 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . ALDOB NM_000035 exon3 c.C192A p.F64L CACAGAGAAGAGG . 134.0 33.0 126.0 0.0 . 69 . . Atlas-SNP HERC4 26091 hgsc.bcm.edu hg19 10 69726472 69726472 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . HERC4 NM_022079 exon16 c.A1894G p.I632V AGTTGATATAATC . 100.0 17.0 120.0 0.0 . 78 . . Atlas-SNP LRMP 4033 hgsc.bcm.edu hg19 12 25232338 25232338 + Nonsense_Mutation SNP T T A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 LRMP,NS,carcinoma,0,1 LRMP NM_001204126 exon6 c.T78A p.Y26X GGAATATTCCTCA . 123.0 22.0 109.0 0.0 . 51 . . Atlas-SNP KIAA1551 55196 hgsc.bcm.edu hg19 12 32135645 32135645 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . NM_018169 exon4 c.G1756A p.A586T CTTCTCGCTTTGC . 51.0 9.0 51.0 0.0 . . . . Atlas-SNP MAPKAPK5 8550 hgsc.bcm.edu hg19 12 112308091 112308091 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . MAPKAPK5 NM_139078 exon6 c.G410A p.R137Q CTCTGCGGCACTG . 151.0 27.0 149.0 0.0 . 56 . . Atlas-SNP NCOR2 9612 hgsc.bcm.edu hg19 12 124835268 124835268 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . NCOR2 NM_006312 exon30 c.G3709A p.V1237I ACAGGACGTCAGC . 32.0 10.0 14.0 0.0 . 475 . . Atlas-SNP ZIC5 85416 hgsc.bcm.edu hg19 13 100617641 100617641 + Missense_Mutation SNP G G A rs146570814 bycluster TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 ZIC5,NS,carcinoma,0,2 ZIC5 NM_033132 exon2 c.C1982T p.T661M TGTATCGTCCGCA . 63.0 13.0 60.0 0.0 . 38 . G|1.000;A|0.000 Atlas-SNP SEC23A 10484 hgsc.bcm.edu hg19 14 39524374 39524374 + Missense_Mutation SNP C C A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SEC23A NM_006364 exon14 c.G1632T p.R544S CAGCCACCTAAGC . 96.0 21.0 83.0 0.0 . 73 . . Atlas-SNP NEMF 9147 hgsc.bcm.edu hg19 14 50269987 50269987 + Missense_Mutation SNP T T C novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . NEMF NM_004713 exon20 c.A1883G p.E628G AAATATTCTCCAG . 105.0 32.0 105.0 0.0 . 79 . . Atlas-SNP TNRC6A 27327 hgsc.bcm.edu hg19 16 24802369 24802369 + Silent SNP G G A rs113829020 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . TNRC6A NM_014494 exon6 c.G2406A p.G802G CCAGGGGGGGTGG . 24.0 12.0 27.0 0.0 . 171 . G|0.997;C|0.003 Atlas-SNP RAB34 83871 hgsc.bcm.edu hg19 17 27041897 27041897 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . RAB34 NM_001144943 exon10 c.T797C p.F266S CGGAAGAAGAATT . 41.0 12.0 26.0 0.0 . 44 . . Atlas-SNP WDR7 23335 hgsc.bcm.edu hg19 18 54362254 54362254 + Missense_Mutation SNP A A G novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . WDR7 NM_052834 exon11 c.A1182G p.I394M AATTATAGATCAG . 130.0 29.0 130.0 0.0 . 166 . . Atlas-SNP SSC5D 284297 hgsc.bcm.edu hg19 19 56029520 56029520 + Missense_Mutation SNP C C T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . SSC5D NM_001144950 exon14 c.C3877T p.P1293S ACAACCCCTCACC . 245.0 33.0 287.0 0.0 . 65 . . Atlas-SNP FLRT3 23767 hgsc.bcm.edu hg19 20 14306475 14306475 + Missense_Mutation SNP A A T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . FLRT3 NM_013281 exon2 c.T1678A p.S560T TCCTTGAGAAGAG . 154.0 31.0 145.0 0.0 . 67 . . Atlas-SNP PASD1 139135 hgsc.bcm.edu hg19 X 150839639 150839639 + Missense_Mutation SNP G G T novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . PASD1 NM_173493 exon12 c.G1201T p.A401S CAGAATGCATTGG . 109.0 21.0 94.0 0.0 . 286 . . Atlas-SNP COX1 5742 hgsc.bcm.edu hg19 MT 6951 6951 + Missense_Mutation SNP G G A novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . ENST00000361624 exon1 c.G1048A p.V350M TTCACCGTAGGTG . 205.0 179.0 391.0 0.0 . . . . Atlas-SNP GSE1 23199 hgsc.bcm.edu hg19 16 85689985 85689997 + Frame_Shift_Del DEL GCGCGAGCGCGAG GCGCGAGCGCGAG - rs3833833 alternate_allele TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 GCGCGAGCGCGAG GCGCGAGCGCGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . . NM_014615 exon7 c.1025_1037del p.342_346del . . 39.0 13.0 21.0 0.0 . . . . Atlas-INDEL BEST1 7439 hgsc.bcm.edu hg19 11 61723374 61723376 + In_Frame_Del DEL CAC CAC - novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 CAC CAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . BEST1 NM_004183 exon4 c.431_433del p.144_145del . . 35.0 13.0 24.0 0.0 . 85 . . Atlas-INDEL REV1 51455 hgsc.bcm.edu hg19 2 100019252 100019253 + Frame_Shift_Del DEL AG AG - novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 AG AG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . REV1 NM_016316 exon21 c.3396_3397del p.1132_1133del . . 63.0 21.0 31.0 0.0 . 100 . . Atlas-Indel,Pindel GBE1 2632 hgsc.bcm.edu hg19 3 81548302 81548302 + Frame_Shift_Del DEL A A - novel TCGA-G3-A25W-01A-11D-A16V-10 TCGA-G3-A25W-11A-12D-A16V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8 fdc8e770-343e-4c4e-bc1d-99375ea94de4 . GBE1 NM_000158 exon15 c.2012delC p.S671fs . . 148.0 16.0 166.0 0.0 . 111 . . Pindel