Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm MMEL1 79258 hgsc.bcm.edu hg19 1 2537745 2537745 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MMEL1 NM_033467 exon8 c.T692C p.V231A ATGAGGACGCGCC . 95.0 4.0 130.0 0.0 . 64 . . Atlas-SNP MEGF6 1953 hgsc.bcm.edu hg19 1 3414980 3414980 + Missense_Mutation SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MEGF6 NM_001409 exon26 c.C3307T p.R1103C GGCAGCGGCCCGT . 46.0 6.0 27.0 0.0 . 91 . . Atlas-SNP ZNF684 127396 hgsc.bcm.edu hg19 1 41012332 41012332 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZNF684 NM_152373 exon5 c.A337G p.M113V CTGACTATGGAGA . 76.0 32.0 88.0 0.0 . 37 . . Atlas-SNP ZMYND12 84217 hgsc.bcm.edu hg19 1 42914250 42914250 + Silent SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZMYND12 NM_032257 exon3 c.C312T p.H104H ATCTTCGTGTTTC . 151.0 50.0 167.0 0.0 . 35 . . Atlas-SNP SZT2 23334 hgsc.bcm.edu hg19 1 43869391 43869391 + Silent SNP T T G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SZT2 NM_015284 exon3 c.T273G p.A91A CCTGGCTTGGCAG . 121.0 40.0 127.0 0.0 . 383 . . Atlas-SNP SZT2 23334 hgsc.bcm.edu hg19 1 43896222 43896222 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SZT2 NM_015284 exon31 c.A4365G p.E1455E GGTAGAATACCGG . 76.0 4.0 78.0 0.0 . 383 . . Atlas-SNP FAF1 11124 hgsc.bcm.edu hg19 1 51210403 51210403 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FAF1 NM_007051 exon5 c.T412C p.S138P TTTTGGACACAGG . 66.0 4.0 58.0 0.0 . 64 . . Atlas-SNP NRD1 4898 hgsc.bcm.edu hg19 1 52306079 52306079 + Missense_Mutation SNP T T A rs62648104 bycluster TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NRD1 NM_001101662 exon2 c.A449T p.E150V TCTTCCTCCACCT . 205.0 19.0 216.0 0.0 . 89 . T|0.024;A|0.976 Atlas-SNP USP24 23358 hgsc.bcm.edu hg19 1 55603294 55603294 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . USP24 NM_015306 exon28 c.T3095C p.V1032A GTCTTCACTGTAA . 60.0 4.0 61.0 0.0 . 323 . . Atlas-SNP C1orf168 199920 hgsc.bcm.edu hg19 1 57207872 57207872 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 C1orf168,NS,carcinoma,0,1 C1orf168 NM_001004303 exon12 c.A1566G p.E522E GACATCTTCATAC . 46.0 2.0 58.0 0.0 . 102 . . Atlas-SNP LRRC7 57554 hgsc.bcm.edu hg19 1 70509692 70509692 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . LRRC7 NM_020794 exon20 c.T3911C p.I1304T GAGGTATTTCAGC . 97.0 4.0 102.0 0.0 . 400 . . Atlas-SNP ACADM 34 hgsc.bcm.edu hg19 1 76198378 76198378 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ACADM NM_001127328 exon3 c.C180T p.A60A ATTTGCCAGAGAG . 122.0 35.0 154.0 0.0 . 50 . . Atlas-SNP COL24A1 255631 hgsc.bcm.edu hg19 1 86340381 86340381 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . COL24A1 NM_152890 exon35 c.A3089G p.D1030G CCAACATCTCCCT . 102.0 6.0 115.0 0.0 . 202 . . Atlas-SNP KCNA10 3744 hgsc.bcm.edu hg19 1 111060286 111060286 + Nonsense_Mutation SNP A A T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . KCNA10 NM_005549 exon1 c.T1124A p.L375X AACCCCAACTCCC . 133.0 30.0 166.0 0.0 . 92 . . Atlas-SNP RAP1A 5906 hgsc.bcm.edu hg19 1 112247050 112247050 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RAP1A NM_001010935 exon7 c.A410G p.Q137R CAAGACAGTGGTG . 69.0 4.0 62.0 0.0 . 14 . . Atlas-SNP CD58 965 hgsc.bcm.edu hg19 1 117087065 117087065 + Nonsense_Mutation SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CD58 NM_001144822 exon2 c.A232T p.K78X TATTTTTAAAAGA . 183.0 68.0 163.0 0.0 . 40 . . Atlas-SNP HIST2H2AB 317772 hgsc.bcm.edu hg19 1 149859298 149859298 + Nonsense_Mutation SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 HIST2H2AB,NS,carcinoma,0,1 HIST2H2AB NM_175065 exon1 c.G169T p.E57X GGTACTCGAGGAC . 349.0 73.0 208.0 0.0 . 49 . . Atlas-SNP TARS2 80222 hgsc.bcm.edu hg19 1 150471707 150471707 + Missense_Mutation SNP C C G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TARS2 NM_025150 exon13 c.C1555G p.L519V CAGGCCCTGAAGG . 116.0 54.0 78.0 0.0 . 91 . . Atlas-SNP DENND4B 9909 hgsc.bcm.edu hg19 1 153907287 153907287 + Missense_Mutation SNP G G C rs199597671 TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DENND4B NM_014856 exon18 c.C2722G p.Q908E GCTGCTGCTGCTG . 122.0 18.0 48.0 0.0 . 210 . . Atlas-SNP ATP8B2 57198 hgsc.bcm.edu hg19 1 154319146 154319146 + Missense_Mutation SNP G G T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ATP8B2 NM_020452 exon26 c.G3174T p.W1058C CATCTGGGGAAGC . 518.0 157.0 347.0 0.0 . 158 . . Atlas-SNP TRIM46 80128 hgsc.bcm.edu hg19 1 155148089 155148089 + Silent SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TRIM46 NM_025058 exon2 c.C291A p.P97P TCTCCCCAAGCCA . 84.0 31.0 56.0 0.0 . 79 . . Atlas-SNP THBS3 7059 hgsc.bcm.edu hg19 1 155167450 155167450 + Missense_Mutation SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . THBS3 NM_007112 exon20 c.G2303T p.G768V GTGTATCCTGGGG . 156.0 18.0 107.0 0.0 . 70 . . Atlas-SNP THBS3 7059 hgsc.bcm.edu hg19 1 155167451 155167451 + Splice_Site SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . THBS3 NM_007112 exon21 c.2303-1G>A . TGTATCCTGGGGT . 158.0 18.0 110.0 0.0 . 70 . . Atlas-SNP GON4L 54856 hgsc.bcm.edu hg19 1 155734765 155734765 + Missense_Mutation SNP A A G rs199671178 by1000genomes;alternate_allele TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GON4L NM_032292 exon21 c.T4499C p.V1500A CGAAATACTTGAG . 377.0 63.0 259.0 0.0 . 392 . A|1.000;T|0.000 Atlas-SNP FCRL5 83416 hgsc.bcm.edu hg19 1 157514336 157514336 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FCRL5 NM_031281 exon5 c.A560G p.E187G AATGGCTCTAGAG . 110.0 57.0 61.0 0.0 . 177 . . Atlas-SNP MAEL 84944 hgsc.bcm.edu hg19 1 166958707 166958707 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MAEL NM_032858 exon1 c.T118C p.S40P TACTGCTCCTCAG . 120.0 7.0 62.0 0.0 . 95 . . Atlas-SNP FMO3 2328 hgsc.bcm.edu hg19 1 171072961 171072961 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FMO3 NM_006894 exon3 c.A168G p.K56K TTACAAATCAGTC . 288.0 153.0 169.0 0.0 . 73 . . Atlas-SNP PRRC2C 23215 hgsc.bcm.edu hg19 1 171511217 171511217 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . . NM_015172 exon16 c.A4606G p.R1536G CCAAAGAGGGAAA . 96.0 4.0 65.0 0.0 . . . . Atlas-SNP SUCO 51430 hgsc.bcm.edu hg19 1 172525148 172525148 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . . NM_014283 exon4 c.C428T p.P143L TCACTCCAATCTC . 96.0 4.0 54.0 0.0 . . . . Atlas-SNP TNR 7143 hgsc.bcm.edu hg19 1 175348689 175348689 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TNR NM_003285 exon9 c.A1962G p.T654T CTCACCTGTCAGG . 169.0 24.0 95.0 0.0 . 399 . . Atlas-SNP AXDND1 126859 hgsc.bcm.edu hg19 1 179504037 179504037 + Missense_Mutation SNP G G C rs6425573 bycluster;by2hit2allele;byhapmap TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . AXDND1 NM_144696 exon25 c.G2971C p.E991Q GAAGAAGAACAAC . 242.0 10.0 193.0 0.0 . 142 . G|1.000;|0.000 Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181765974 181765974 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CACNA1E NM_001205293 exon47 c.T6379C p.S2127P GGCAGGTCACAGA . 171.0 7.0 110.0 0.0 . 778 . . Atlas-SNP LAMC2 3918 hgsc.bcm.edu hg19 1 183192335 183192335 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . LAMC2 NM_005562 exon7 c.A829G p.R277G GTGGACAGAGGAG . 200.0 8.0 159.0 0.0 . 113 . . Atlas-SNP IVNS1ABP 10625 hgsc.bcm.edu hg19 1 185267396 185267396 + Missense_Mutation SNP A A T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . IVNS1ABP NM_006469 exon15 c.T1700A p.F567Y CCATCAAAGCCAC . 170.0 97.0 153.0 0.0 . 80 . . Atlas-SNP IVNS1ABP 10625 hgsc.bcm.edu hg19 1 185267406 185267406 + Missense_Mutation SNP A A C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . IVNS1ABP NM_006469 exon15 c.T1690G p.C564G CACCACATACAAA . 141.0 81.0 140.0 0.0 . 80 . . Atlas-SNP FAM5C 339479 hgsc.bcm.edu hg19 1 190067205 190067205 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FAM5C NM_199051 exon8 c.G2244A p.A748A ATTAAACGCCTGC . 192.0 24.0 131.0 0.0 . 343 . . Atlas-SNP LAD1 3898 hgsc.bcm.edu hg19 1 201356005 201356005 + Missense_Mutation SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 LAD1,trunk,malignant_melanoma,0,1 LAD1 NM_005558 exon3 c.G484T p.V162L TGCCCACCAAGCT . 55.0 3.0 75.0 0.0 . 42 . . Atlas-SNP DISP1 84976 hgsc.bcm.edu hg19 1 223179204 223179204 + Missense_Mutation SNP G G C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DISP1 NM_032890 exon10 c.G4465C p.V1489L GTGAGAGTGAAGT . 290.0 43.0 215.0 0.0 . 145 . . Atlas-SNP GUK1 2987 hgsc.bcm.edu hg19 1 228336428 228336428 + Missense_Mutation SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GUK1 NM_001242840 exon7 c.C601A p.P201T CCCGGGCCCATAC . 80.0 26.0 45.0 0.0 . 34 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228564922 228564922 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . OBSCN NM_001271223 exon112 c.A26080G p.S8694G TACCTCAGCCCCC . 79.0 4.0 34.0 0.0 . 2142 . . Atlas-SNP OR2W3 343171 hgsc.bcm.edu hg19 1 248059354 248059354 + Missense_Mutation SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . OR2W3 NM_001001957 exon1 c.T466A p.S156T GCCAACTCCTTGG . 152.0 11.0 126.0 0.0 . 113 . . Atlas-SNP OR2W3 343171 hgsc.bcm.edu hg19 1 248059355 248059355 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 OR2W3,scalp,carcinoma,0,6 OR2W3 NM_001001957 exon1 c.C467T p.S156F CCAACTCCTTGGC . 145.0 16.0 123.0 0.0 . 113 . . Atlas-SNP OR2T33 391195 hgsc.bcm.edu hg19 1 248436937 248436937 + Silent SNP G G T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . OR2T33 NM_001004695 exon1 c.C180A p.L60L GCTCAGGAGGAAG . 1030.0 456.0 640.0 0.0 . 133 . . Atlas-SNP FAM150B 285016 hgsc.bcm.edu hg19 2 286308 286308 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FAM150B NM_001002919 exon3 c.T289C p.F97L TTAGAAACTTGTC . 110.0 5.0 134.0 0.0 . 12 . . Atlas-SNP GREB1 9687 hgsc.bcm.edu hg19 2 11750977 11750977 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GREB1 NM_014668 exon18 c.T2830C p.C944R TGCCCCTGCGGCC . 100.0 4.0 98.0 0.0 . 308 . . Atlas-SNP NBAS 51594 hgsc.bcm.edu hg19 2 15614223 15614223 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NBAS NM_015909 exon15 c.T1567C p.S523P TCGTGGAGCGCAA . 93.0 4.0 109.0 0.0 . 246 . . Atlas-SNP ASXL2 55252 hgsc.bcm.edu hg19 2 25967273 25967273 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ASXL2 NM_018263 exon12 c.T1933C p.S645P TGATGGAGACTGG . 84.0 4.0 87.0 0.0 . 217 . . Atlas-SNP NRBP1 29959 hgsc.bcm.edu hg19 2 27656275 27656275 + Missense_Mutation SNP A A T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NRBP1 NM_013392 exon2 c.A135T p.E45D AGAGGAAGAAGAA . 115.0 40.0 141.0 0.0 . 40 . . Atlas-SNP SPAST 6683 hgsc.bcm.edu hg19 2 32379552 32379552 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SPAST NM_014946 exon17 c.A1838G p.D613G TTGGAGATACCAC . 85.0 4.0 59.0 0.0 . 61 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32660588 32660588 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . BIRC6 NM_016252 exon14 c.A3434G p.N1145S AACAAAATGGGAA . 72.0 4.0 83.0 0.0 . 838 . . Atlas-SNP OXER1 165140 hgsc.bcm.edu hg19 2 42991186 42991186 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . OXER1 NM_148962 exon1 c.T134C p.L45P GAGCTCAGGTTAT . 98.0 4.0 121.0 0.0 . 33 . . Atlas-SNP KIAA1841 84542 hgsc.bcm.edu hg19 2 61304085 61304085 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . KIAA1841 NM_032506 exon6 c.A462G p.E154E TGATGAAGCAAAA . 97.0 4.0 137.0 0.0 . 95 . . Atlas-SNP ETAA1 54465 hgsc.bcm.edu hg19 2 67630454 67630454 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ETAA1 NM_019002 exon5 c.A640G p.R214G AACAAGAGGAATT . 70.0 4.0 81.0 0.0 . 88 . . Atlas-SNP AAK1 22848 hgsc.bcm.edu hg19 2 69741744 69741744 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . AAK1 NM_014911 exon13 c.A1635G p.Q545Q CAGCTGTTGCTGT . 98.0 5.0 80.0 0.0 . 121 . . Atlas-SNP AAK1 22848 hgsc.bcm.edu hg19 2 69741753 69741753 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . AAK1 NM_014911 exon13 c.G1626A p.Q542Q CTGTTGCTGTTGT . 100.0 8.0 74.0 0.0 . 121 . . Atlas-SNP DYSF 8291 hgsc.bcm.edu hg19 2 71708030 71708030 + Nonsense_Mutation SNP A A T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DYSF NM_001130984 exon2 c.A109T p.K37X AGAACCAAAGTCA . 224.0 85.0 272.0 0.0 . 536 . . Atlas-SNP SMYD5 10322 hgsc.bcm.edu hg19 2 73449933 73449933 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SMYD5 NM_006062 exon7 c.A693G p.E231E TGAGGAAGCAGTC . 119.0 6.0 83.0 0.0 . 58 . . Atlas-SNP C2orf78 388960 hgsc.bcm.edu hg19 2 74043271 74043271 + Missense_Mutation SNP G G T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . C2orf78 NM_001080474 exon3 c.G1921T p.G641W GCACTCGGGAAAA . 53.0 4.0 64.0 0.0 . 150 . . Atlas-SNP ZC3H8 84524 hgsc.bcm.edu hg19 2 112989436 112989436 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZC3H8 NM_032494 exon7 c.A822G p.E274E TTGTGTTTCAGGA . 41.0 4.0 43.0 0.0 . 17 . . Atlas-SNP GCA 25801 hgsc.bcm.edu hg19 2 163216022 163216022 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GCA NM_012198 exon7 c.A587G p.D196G AAAGAGACCACTT . 93.0 4.0 105.0 0.0 . 15 . . Atlas-SNP GRB14 2888 hgsc.bcm.edu hg19 2 165383605 165383605 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GRB14 NM_004490 exon4 c.A522G p.L174L GTTGGATAGCACT . 84.0 4.0 64.0 0.0 . 73 . . Atlas-SNP SCN1A 6323 hgsc.bcm.edu hg19 2 166911151 166911151 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SCN1A NM_001165964 exon4 c.T599C p.F200S TACGCAAATGTAA . 76.0 4.0 83.0 0.0 . 641 . . Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 170013995 170013995 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . LRP2 NM_004525 exon64 c.A11905G p.T3969A CACATGTTCTTTC . 66.0 4.0 124.0 0.0 . 751 . . Atlas-SNP PPIG 9360 hgsc.bcm.edu hg19 2 170487422 170487422 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PPIG NM_004792 exon10 c.A686G p.K229R CAAAGAAAAGAAA . 95.0 4.0 133.0 0.0 . 100 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179399440 179399440 + Missense_Mutation SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TTN NM_001267550 exon358 c.C101902T p.P33968S CCCCTGGTTTCAG . 90.0 4.0 77.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179585665 179585665 + Missense_Mutation SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TTN NM_001267550 exon79 c.C23081T p.T7694I AACGCTGTGCTGC . 99.0 4.0 98.0 0.0 . 18412 . . Atlas-SNP SSFA2 6744 hgsc.bcm.edu hg19 2 182780346 182780346 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SSFA2 NM_001130445 exon11 c.A1979G p.H660R CCACACACCATAT . 106.0 6.0 108.0 0.0 . 130 . . Atlas-SNP ZNF804A 91752 hgsc.bcm.edu hg19 2 185802216 185802216 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZNF804A NM_194250 exon4 c.T2093C p.I698T ACACAATACTTTT . 47.0 5.0 37.0 0.0 . 322 . . Atlas-SNP ITGAV 3685 hgsc.bcm.edu hg19 2 187531442 187531442 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ITGAV NM_002210 exon22 c.T2178C p.G726G AGCTGGTCTTCGT . 76.0 4.0 73.0 0.0 . 124 . . Atlas-SNP HSPE1-MOB4 0 hgsc.bcm.edu hg19 2 198405093 198405093 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . . NM_001202485 exon6 c.A394G p.T132A CCAGATACTTGCA . 99.0 4.0 131.0 0.0 . . . . Atlas-SNP CFLAR 8837 hgsc.bcm.edu hg19 2 202025503 202025503 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CFLAR NM_003879 exon9 c.A1142G p.K381R CGATGAAGAATGT . 89.0 4.0 101.0 0.0 . 37 . . Atlas-SNP CDK5R2 8941 hgsc.bcm.edu hg19 2 219825610 219825610 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 CDK5R2,right_lower_lobe,carcinoma,0,1 CDK5R2 NM_003936 exon1 c.C1068T p.A356A CGCGGCCGGAACC . 25.0 2.0 13.0 0.0 . 17 . . Atlas-SNP CCDC140 151278 hgsc.bcm.edu hg19 2 223169002 223169002 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CCDC140 NM_153038 exon2 c.T381C p.T127T ACGTACTCTCCCG . 84.0 4.0 92.0 0.0 . 20 . . Atlas-SNP SP110 3431 hgsc.bcm.edu hg19 2 231048350 231048350 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SP110 NM_001185015 exon13 c.A1304G p.K435R TCCTTTTTCTTTT . 76.0 4.0 102.0 0.0 . 105 . . Atlas-SNP EFHD1 80303 hgsc.bcm.edu hg19 2 233546307 233546307 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . EFHD1 NM_025202 exon4 c.T598C p.S200P GCCTTGTCATCGG . 112.0 5.0 97.0 0.0 . 28 . . Atlas-SNP USP40 55230 hgsc.bcm.edu hg19 2 234436105 234436105 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . USP40 NM_018218 exon12 c.T1706C p.L569S AAGGTCAAATCCC . 69.0 4.0 82.0 0.0 . 174 . . Atlas-SNP MTERFD2 130916 hgsc.bcm.edu hg19 2 242035461 242035461 + Missense_Mutation SNP G G C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 MTERFD2,NS,carcinoma,0,1 MTERFD2 NM_182501 exon4 c.C1098G p.D366E CGCCTCGTCGTCG . 111.0 10.0 86.0 0.0 . 33 . . Atlas-SNP ATP2B2 491 hgsc.bcm.edu hg19 3 10443863 10443863 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ATP2B2 NM_001683 exon4 c.A567G p.E189E TTTCTGTTCCTGC . 85.0 4.0 98.0 0.0 . 304 . . Atlas-SNP ANKRD28 23243 hgsc.bcm.edu hg19 3 15727529 15727529 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ANKRD28 NM_015199 exon20 c.A2059G p.R687G CTGTCCTTCCCCA . 99.0 4.0 99.0 0.0 . 121 . . Atlas-SNP SATB1 6304 hgsc.bcm.edu hg19 3 18438761 18438761 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SATB1 NM_002971 exon6 c.A661G p.N221D TACTGTTCACAAT . 96.0 5.0 112.0 0.0 . 96 . . Atlas-SNP SGOL1 151648 hgsc.bcm.edu hg19 3 20219761 20219761 + Splice_Site SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 SGOL1,NS,carcinoma,0,1 SGOL1 NM_001199254 exon5 c.416+2T>C . ATACTAACGGTAA . 49.0 2.0 44.0 0.0 . 55 . . Atlas-SNP OXSR1 9943 hgsc.bcm.edu hg19 3 38289195 38289195 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . OXSR1 NM_005109 exon14 c.A1294G p.I432V ACCAAGATCCCAA . 113.0 5.0 149.0 0.0 . 74 . . Atlas-SNP TMEM42 131616 hgsc.bcm.edu hg19 3 44906569 44906569 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TMEM42 NM_144638 exon3 c.A377G p.E126G GCCAGGAGGTCTT . 143.0 6.0 127.0 0.0 . 15 . . Atlas-SNP BSN 8927 hgsc.bcm.edu hg19 3 49693795 49693795 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . BSN NM_003458 exon5 c.T6806C p.I2269T TTCCCATTGCTTC . 85.0 4.0 111.0 0.0 . 272 . . Atlas-SNP ITIH1 3697 hgsc.bcm.edu hg19 3 52818435 52818435 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ITIH1 NM_002215 exon11 c.A1349G p.E450G CCATGGAGAACAA . 102.0 5.0 133.0 0.0 . 108 . . Atlas-SNP DCP1A 55802 hgsc.bcm.edu hg19 3 53324825 53324825 + Splice_Site SNP C C A rs147183966 TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DCP1A NM_018403 exon9 c.1444+1G>T . ATGGCACTGGCAC . 21.0 8.0 7.0 0.0 . 30 . . Atlas-SNP MAGI1 9223 hgsc.bcm.edu hg19 3 65376936 65376936 + Missense_Mutation SNP A A G rs201132775 bycluster;alternate_allele TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MAGI1 NM_001033057 exon14 c.T2297C p.V766A GGGAGCACCTGTG . 107.0 5.0 129.0 0.0 . 481 . A|0.999;C|0.001 Atlas-SNP ROBO1 6091 hgsc.bcm.edu hg19 3 78648068 78648068 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ROBO1 NM_002941 exon31 c.A4951G p.S1651G TTCAGCTTTCAGT . 95.0 4.0 129.0 0.0 . 833 . . Atlas-SNP OR5H1 26341 hgsc.bcm.edu hg19 3 97852336 97852336 + Silent SNP G G A rs138973744 TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . OR5H1 NM_001005338 exon1 c.G795A p.P265P ATCTCCGCAAGCA . 208.0 54.0 238.0 0.0 . 71 . G|1.000;A|0.000 Atlas-SNP ALCAM 214 hgsc.bcm.edu hg19 3 105268982 105268982 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ALCAM NM_001627 exon12 c.T1386C p.S462S GGAATCTCCTTAT . 71.0 4.0 71.0 0.0 . 71 . . Atlas-SNP PHLDB2 90102 hgsc.bcm.edu hg19 3 111671430 111671430 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PHLDB2 NM_001134439 exon11 c.T2643C p.S881S TAGAAGTCTGGAA . 50.0 4.0 47.0 0.0 . 449 . . Atlas-SNP TIGIT 201633 hgsc.bcm.edu hg19 3 114018526 114018526 + Silent SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TIGIT NM_173799 exon3 c.C474A p.I158I AGTCATCGTGGTG . 73.0 5.0 75.0 0.0 . 42 . . Atlas-SNP GOLGB1 2804 hgsc.bcm.edu hg19 3 121411031 121411031 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GOLGB1 NM_001256486 exon14 c.T7180C p.S2394P TGCCAGAAAGCAG . 80.0 4.0 107.0 0.0 . 319 . . Atlas-SNP SMC4 10051 hgsc.bcm.edu hg19 3 160148405 160148405 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SMC4 NM_005496 exon18 c.A2814G p.Q938Q GGCACAAGACTCT . 78.0 28.0 109.0 0.0 . 135 . . Atlas-SNP GOLIM4 27333 hgsc.bcm.edu hg19 3 167728183 167728183 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GOLIM4 NM_014498 exon16 c.A1965G p.G655G CTCTTCTCCATCA . 71.0 4.0 77.0 0.0 . 71 . . Atlas-SNP EHHADH 1962 hgsc.bcm.edu hg19 3 184910635 184910635 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . EHHADH NM_001966 exon7 c.A1551G p.G517G AAAAGGTCCCATT . 143.0 6.0 154.0 0.0 . 73 . . Atlas-SNP MAP3K13 9175 hgsc.bcm.edu hg19 3 185146486 185146486 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MAP3K13 NM_004721 exon2 c.T117C p.S39S CCCTTCTCCCAAG . 85.0 4.0 98.0 0.0 . 209 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195518119 195518119 + Missense_Mutation SNP A A T rs201789760 bycluster TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MUC4 NM_018406 exon2 c.T332A p.M111K GTCTCCATCACAT . 150.0 6.0 147.0 0.0 . 1505 . . Atlas-SNP ADD1 118 hgsc.bcm.edu hg19 4 2906529 2906529 + Silent SNP G G T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ADD1 NM_014190 exon10 c.G1200T p.L400L TGCTCTGAGAGAG . 188.0 40.0 174.0 0.0 . 56 . . Atlas-SNP ARAP2 116984 hgsc.bcm.edu hg19 4 36085011 36085011 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ARAP2 NM_015230 exon29 c.A4487G p.K1496R ATTTTCTTTTTCA . 95.0 4.0 111.0 0.0 . 210 . . Atlas-SNP UBE2K 3093 hgsc.bcm.edu hg19 4 39747379 39747379 + Missense_Mutation SNP A A T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . UBE2K NM_005339 exon3 c.A165T p.R55S AGGAAGATACCAA . 172.0 75.0 269.0 1.0 . 16 . . Atlas-SNP CWH43 80157 hgsc.bcm.edu hg19 4 48990546 48990546 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CWH43 NM_025087 exon2 c.T96C p.F32F TTACTTTCCTTTG . 91.0 4.0 66.0 0.0 . 101 . . Atlas-SNP CXCL5 6374 hgsc.bcm.edu hg19 4 74864222 74864222 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CXCL5 NM_002994 exon1 c.T77C p.L26P AGCAGCAGCAGCA . 144.0 30.0 94.0 0.0 . 15 . . Atlas-SNP BTC 685 hgsc.bcm.edu hg19 4 75673278 75673278 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . BTC NM_001729 exon5 c.A510G p.E170E AATATCTTCATTG . 94.0 4.0 93.0 0.0 . 23 . . Atlas-SNP RCHY1 25898 hgsc.bcm.edu hg19 4 76415820 76415820 + Missense_Mutation SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RCHY1 NM_015436 exon8 c.C628T p.P210S CTGATGGCATAGG . 155.0 70.0 185.0 0.0 . 17 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79387588 79387588 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FRAS1 NM_025074 exon50 c.A7256G p.E2419G GAAAAGAGGTGAG . 143.0 6.0 125.0 0.0 . 779 . . Atlas-SNP SMARCAD1 56916 hgsc.bcm.edu hg19 4 95197544 95197544 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SMARCAD1 NM_001128429 exon15 c.A1863G p.K621K GCTGAAACTTAAT . 73.0 5.0 87.0 0.0 . 97 . . Atlas-SNP USP53 54532 hgsc.bcm.edu hg19 4 120188512 120188512 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . USP53 NM_019050 exon12 c.T1010C p.I337T AATGCATTCGATG . 97.0 4.0 110.0 0.0 . 69 . . Atlas-SNP ADAD1 132612 hgsc.bcm.edu hg19 4 123332460 123332460 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 ADAD1,NS,carcinoma,0,2 ADAD1 NM_139243 exon9 c.C932T p.S311F CAACTTCTAATCT . 287.0 35.0 344.0 0.0 . 94 . . Atlas-SNP PRSS48 345062 hgsc.bcm.edu hg19 4 152201018 152201018 + Missense_Mutation SNP G G T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PRSS48 NM_183375 exon2 c.G123T p.W41C GCCTTGGCAGGTC . 135.0 7.0 128.0 0.0 . 91 . . Atlas-SNP PRSS48 345062 hgsc.bcm.edu hg19 4 152212524 152212524 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PRSS48 NM_183375 exon5 c.A906G p.R302R ACACAGAGTAGGC . 149.0 6.0 175.0 0.0 . 91 . . Atlas-SNP PET112 5188 hgsc.bcm.edu hg19 4 152593987 152593987 + Missense_Mutation SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PET112 NM_004564 exon12 c.A1472T p.Q491L TCAAGCTGCTTTT . 215.0 40.0 168.0 0.0 . 43 . . Atlas-SNP FGB 2244 hgsc.bcm.edu hg19 4 155490755 155490755 + Missense_Mutation SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FGB NM_005141 exon7 c.G1048A p.D350N AAAGGAGACAAAG . 94.0 5.0 91.0 0.0 . 71 . . Atlas-SNP TKTL2 84076 hgsc.bcm.edu hg19 4 164393283 164393283 + Missense_Mutation SNP A A T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TKTL2 NM_032136 exon1 c.T1604A p.V535D TCGATGACACGGA . 144.0 38.0 108.0 0.0 . 130 . . Atlas-SNP TRIM60 166655 hgsc.bcm.edu hg19 4 165962541 165962541 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 TRIM60,caecum,carcinoma,0,1 TRIM60 NM_001258025 exon4 c.T1317C p.T439T CTATACTTTTAAC . 49.0 2.0 60.0 0.0 . 73 . . Atlas-SNP NEK1 4750 hgsc.bcm.edu hg19 4 170502055 170502055 + Splice_Site SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NEK1 NM_001199397 exon12 c.808-2A>G . ATAAGCTGAGATT . 90.0 4.0 88.0 0.0 . 203 . . Atlas-SNP HPGD 3248 hgsc.bcm.edu hg19 4 175443546 175443546 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . HPGD NM_000860 exon1 c.A57G p.R19R AAAGGCTCTGCCT . 120.0 5.0 75.0 0.0 . 19 . . Atlas-SNP PLEKHG4B 153478 hgsc.bcm.edu hg19 5 155484 155484 + Missense_Mutation SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PLEKHG4B NM_052909 exon7 c.T1066A p.C356S GCAAACTGTGAAG . 168.0 68.0 170.0 0.0 . 167 . . Atlas-SNP PLEKHG4B 153478 hgsc.bcm.edu hg19 5 174118 174118 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PLEKHG4B NM_052909 exon16 c.A3239G p.D1080G CTCAGGACACCTA . 95.0 4.0 107.0 0.0 . 167 . . Atlas-SNP CDH18 1016 hgsc.bcm.edu hg19 5 19503117 19503117 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CDH18 NM_001167667 exon11 c.T1614C p.T538T CTTCAGAGTGAAG . 73.0 4.0 63.0 0.0 . 561 . . Atlas-SNP ADAMTS12 81792 hgsc.bcm.edu hg19 5 33684042 33684042 + Silent SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ADAMTS12 NM_030955 exon4 c.G753T p.L251L CACCACCAGTGTC . 127.0 70.0 84.0 0.0 . 464 . . Atlas-SNP GIN1 54826 hgsc.bcm.edu hg19 5 102444410 102444410 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GIN1 NM_017676 exon2 c.T2C p.M1T CGGACCATTGTGA . 61.0 4.0 58.0 0.0 . 53 . . Atlas-SNP SLC4A9 83697 hgsc.bcm.edu hg19 5 139739997 139739997 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SLC4A9 NM_001258428 exon1 c.A176G p.Q59R TCATTCAGCTGAA . 76.0 5.0 70.0 0.0 . 125 . . Atlas-SNP PCDHB10 56126 hgsc.bcm.edu hg19 5 140572961 140572961 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PCDHB10 NM_018930 exon1 c.A836G p.Y279C TATCCTATTCATT . 80.0 6.0 82.0 0.0 . 177 . . Atlas-SNP PCDHGC3 5098 hgsc.bcm.edu hg19 5 140857641 140857641 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PCDHGC3 NM_032402 exon1 c.A1958G p.E653G ATGGGGAGCCTTC . 71.0 4.0 64.0 0.0 . 173 . . Atlas-SNP FBXO38 81545 hgsc.bcm.edu hg19 5 147788757 147788757 + Nonsense_Mutation SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FBXO38 NM_001271723 exon8 c.C939A p.Y313X TGGTTACCTCATC . 276.0 70.0 242.0 0.0 . 115 . . Atlas-SNP AFAP1L1 134265 hgsc.bcm.edu hg19 5 148699221 148699221 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 AFAP1L1,NS,carcinoma,0,1 AFAP1L1 NM_001146337 exon13 c.C1556T p.A519V CGGAGGCGCTGCA . 111.0 25.0 88.0 0.0 . 86 . . Atlas-SNP NMUR2 56923 hgsc.bcm.edu hg19 5 151784407 151784407 + Missense_Mutation SNP A A T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NMUR2 NM_020167 exon1 c.T268A p.S90T GGTCAGAGACCGC . 109.0 56.0 100.0 0.0 . 111 . . Atlas-SNP SH3PXD2B 285590 hgsc.bcm.edu hg19 5 171780994 171780994 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SH3PXD2B NM_001017995 exon9 c.T683C p.V228A TAGATGACTGTGT . 108.0 5.0 65.0 0.0 . 91 . . Atlas-SNP ZNF354C 30832 hgsc.bcm.edu hg19 5 178506491 178506491 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZNF354C NM_014594 exon5 c.A1058G p.E353G CAGGTGAGAAACC . 82.0 4.0 48.0 0.0 . 77 . . Atlas-SNP CNOT6 57472 hgsc.bcm.edu hg19 5 179956371 179956371 + Missense_Mutation SNP C C G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CNOT6 NM_015455 exon2 c.C95G p.A32G ACTGGGCAGAGCT . 179.0 39.0 202.0 0.0 . 47 . . Atlas-SNP RIOK1 83732 hgsc.bcm.edu hg19 6 7405545 7405545 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RIOK1 NM_031480 exon12 c.A1160G p.D387G TCACAGATCCATC . 93.0 4.0 92.0 0.0 . 36 . . Atlas-SNP PRSS16 10279 hgsc.bcm.edu hg19 6 27220676 27220676 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PRSS16 NM_005865 exon9 c.T1098C p.S366S ACTGTCTGGTGTG . 215.0 83.0 201.0 0.0 . 66 . . Atlas-SNP GTF2H4 2968 hgsc.bcm.edu hg19 6 30880224 30880224 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GTF2H4 NM_001517 exon11 c.A1078G p.T360A GGCATCACAGCCC . 85.0 4.0 82.0 0.0 . 38 . . Atlas-SNP DPCR1 135656 hgsc.bcm.edu hg19 6 30917315 30917315 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DPCR1 NM_080870 exon2 c.A1074G p.P358P ATTCCCAGCAGAG . 98.0 4.0 108.0 0.0 . 99 . . Atlas-SNP CDSN 1041 hgsc.bcm.edu hg19 6 31084902 31084902 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CDSN NM_001264 exon2 c.A490G p.S164G TGCTGCTGAACTG . 98.0 4.0 74.0 0.0 . 48 . . Atlas-SNP FGD2 221472 hgsc.bcm.edu hg19 6 36982465 36982465 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FGD2 NM_173558 exon7 c.A867G p.A289A CAATGCAGCCATC . 94.0 4.0 102.0 0.0 . 65 . . Atlas-SNP KIF6 221458 hgsc.bcm.edu hg19 6 39513359 39513359 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . KIF6 NM_145027 exon11 c.G1287A p.K429K GTTTACCTTTAAA . 54.0 21.0 81.0 0.0 . 233 . . Atlas-SNP XPO5 57510 hgsc.bcm.edu hg19 6 43530011 43530011 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . XPO5 NM_020750 exon9 c.G984A p.A328A GCCCAGCGCACAC . 96.0 4.0 98.0 0.0 . 79 . . Atlas-SNP PAQR8 85315 hgsc.bcm.edu hg19 6 52268756 52268756 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PAQR8 NM_133367 exon2 c.A745G p.T249A TACCACACCCTCC . 126.0 6.0 105.0 0.0 . 31 . . Atlas-SNP COL12A1 1303 hgsc.bcm.edu hg19 6 75893787 75893787 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . COL12A1 NM_004370 exon9 c.T1071C p.S357S ACTAGGAGATGGA . 90.0 4.0 125.0 0.0 . 385 . . Atlas-SNP SENP6 26054 hgsc.bcm.edu hg19 6 76380428 76380428 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 SENP6_ENST00000447266,caecum,carcinoma,0,2 SENP6 NM_015571 exon11 c.C1384T p.P462S ATAGAGCCTGTAA . 29.0 3.0 28.0 0.0 . 189 . . Atlas-SNP ASCC3 10973 hgsc.bcm.edu hg19 6 101095306 101095306 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 ASCC3,NS,carcinoma,0,1 ASCC3 NM_006828 exon21 c.G3274A p.A1092T AAAGAGCACGGAC . 64.0 3.0 71.0 0.0 . 205 . . Atlas-SNP AIM1 202 hgsc.bcm.edu hg19 6 106967638 106967638 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . AIM1 NM_001624 exon2 c.T1331C p.M444T CGGCCATGCCAAA . 92.0 4.0 80.0 0.0 . 161 . . Atlas-SNP REV3L 5980 hgsc.bcm.edu hg19 6 111711382 111711382 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . REV3L NM_002912 exon6 c.T664C p.S222P TTAAAGAGCTGCA . 104.0 6.0 134.0 0.0 . 386 . . Atlas-SNP VNN1 8876 hgsc.bcm.edu hg19 6 133035128 133035128 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . VNN1 NM_004666 exon1 c.T47C p.V16A CTTGAGACATAGA . 48.0 4.0 80.0 0.0 . 69 . . Atlas-SNP BCLAF1 9774 hgsc.bcm.edu hg19 6 136599813 136599813 + Missense_Mutation SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 BCLAF1_ENST00000531224,colon,carcinoma,0,1 BCLAF1 NM_014739 exon4 c.G206T p.R69L TAAGGTCGTCTCA . 106.0 25.0 149.0 0.0 . 203 . . Atlas-SNP C6orf211 79624 hgsc.bcm.edu hg19 6 151775692 151775692 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 C6orf211,NS,carcinoma,0,1 C6orf211 NM_024573 exon2 c.A51G p.A17A ATTTGCATATCTT . 85.0 4.0 100.0 0.0 . 30 . . Atlas-SNP CCDC170 80129 hgsc.bcm.edu hg19 6 151917535 151917535 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . . NM_025059 exon9 c.A1533G p.I511M GAAAATAGCCCAG . 51.0 4.0 80.0 0.0 . . . . Atlas-SNP PLG 5340 hgsc.bcm.edu hg19 6 161158038 161158038 + Silent SNP A A C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PLG NM_000301 exon14 c.A1801C p.R601R AGAACAAGGTAAG . 60.0 45.0 89.0 0.0 . 150 . . Atlas-SNP GPNMB 10457 hgsc.bcm.edu hg19 7 23313776 23313776 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GPNMB NM_001005340 exon11 c.T1652C p.V551A AAGCCGTGTTCTT . 117.0 5.0 98.0 0.0 . 88 . . Atlas-SNP UPP1 7378 hgsc.bcm.edu hg19 7 48147063 48147063 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . UPP1 NM_003364 exon8 c.C752T p.S251F TGGAGTCCTCGGT . 143.0 31.0 102.0 0.0 . 35 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48317894 48317894 + Missense_Mutation SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ABCA13 NM_152701 exon18 c.C7103A p.A2368D TTAATGCCCTTCT . 70.0 29.0 86.0 0.0 . 1192 . . Atlas-SNP COBL 23242 hgsc.bcm.edu hg19 7 51097117 51097117 + Missense_Mutation SNP T T C rs376884962 TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . COBL NM_015198 exon10 c.A1676G p.N559S TTTCTATTGGAAA . 142.0 30.0 102.0 0.0 . 167 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82581498 82581498 + Missense_Mutation SNP A A T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 Q9Y6V0-3,colon,carcinoma,-1,3 PCLO NM_014510 exon5 c.T8771A p.I2924K TCTTCTATTATTT . 69.0 4.0 44.0 0.0 . 1506 . . Atlas-SNP CCDC132 55610 hgsc.bcm.edu hg19 7 92888896 92888896 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CCDC132 NM_024553 exon9 c.T611C p.L204P TGTGCCTTGAATG . 65.0 4.0 56.0 0.0 . 136 . . Atlas-SNP CASD1 64921 hgsc.bcm.edu hg19 7 94167114 94167114 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CASD1 NM_022900 exon9 c.A1174G p.K392E TTCATGAAGGAAA . 76.0 4.0 68.0 0.0 . 70 . . Atlas-SNP ATP5J2-PTCD1 100526740 hgsc.bcm.edu hg19 7 99021532 99021532 + Missense_Mutation SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . . NM_001198879 exon8 c.G1933T p.A645S TGGCCGCGTTGAT . 304.0 132.0 216.0 0.0 . . . . Atlas-SNP CNPY4 245812 hgsc.bcm.edu hg19 7 99722198 99722198 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CNPY4 NM_152755 exon5 c.A527G p.E176G ATCAGGAGCAGCC . 99.0 5.0 99.0 0.0 . 18 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100684024 100684024 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MUC17 NM_001040105 exon3 c.T9327C p.G3109G AACAGGTGTGCCT . 87.0 4.0 77.0 0.0 . 804 . . Atlas-SNP LRRC17 10234 hgsc.bcm.edu hg19 7 102575002 102575002 + Missense_Mutation SNP A A T rs77576273 TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . LRRC17 NM_005824 exon2 c.A642T p.E214D TAATGAAGAAGAA . 9.0 4.0 3.0 0.0 . 45 . . Atlas-SNP ING3 54556 hgsc.bcm.edu hg19 7 120607679 120607679 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ING3 NM_019071 exon7 c.A533G p.D178G CGTCAGATGCCTC . 73.0 4.0 87.0 0.0 . 36 . . Atlas-SNP GPR37 2861 hgsc.bcm.edu hg19 7 124387043 124387043 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GPR37 NM_005302 exon2 c.A1378G p.T460A AGCAGGTGATGGT . 92.0 4.0 59.0 0.0 . 89 . . Atlas-SNP CCDC136 64753 hgsc.bcm.edu hg19 7 128445480 128445480 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CCDC136 NM_001201372 exon7 c.A964G p.T322A TCTCAGACTTCAG . 87.0 5.0 65.0 0.0 . 170 . . Atlas-SNP DGKI 9162 hgsc.bcm.edu hg19 7 137154364 137154364 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DGKI NM_004717 exon25 c.A2429G p.D810G TCATGGTCCTGGA . 91.0 4.0 57.0 0.0 . 335 . . Atlas-SNP SVOPL 136306 hgsc.bcm.edu hg19 7 138329500 138329500 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SVOPL NM_001139456 exon8 c.T751C p.S251P TGACCGAGCGGTT . 85.0 4.0 59.0 0.0 . 111 . . Atlas-SNP UBN2 254048 hgsc.bcm.edu hg19 7 138954250 138954250 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . UBN2 NM_173569 exon8 c.A1577G p.K526R TGAAGAAGTTACA . 80.0 4.0 52.0 0.0 . 90 . . Atlas-SNP ZNF786 136051 hgsc.bcm.edu hg19 7 148768069 148768069 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZNF786 NM_152411 exon4 c.A1795G p.N599D TCCTGTTGCACTC . 99.0 4.0 86.0 0.0 . 69 . . Atlas-SNP SSPO 23145 hgsc.bcm.edu hg19 7 149523267 149523267 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 NM_198455_2,lower_third,carcinoma,0,1 . NM_198455 exon101 c.A14350G p.M4784V GGCACTATGGAGC . 71.0 3.0 49.0 0.0 . . . . Atlas-SNP FBXO25 26260 hgsc.bcm.edu hg19 8 408474 408474 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FBXO25 NM_183420 exon8 c.A766G p.T256A CAGGTGACCCCCA . 103.0 5.0 154.0 0.0 . 25 . . Atlas-SNP XKR5 389610 hgsc.bcm.edu hg19 8 6681155 6681155 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 XKR5,caecum,carcinoma,0,1 XKR5 NM_207411 exon4 c.A525G p.P175P GGCCCATGGCATG . 71.0 3.0 103.0 0.0 . 20 . . Atlas-SNP TUSC3 7991 hgsc.bcm.edu hg19 8 15605922 15605922 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 TUSC3,caecum,carcinoma,0,1 TUSC3 NM_178234 exon9 c.T976C p.F326L TTCTTCTTCAGTT . 81.0 4.0 145.0 0.0 . 98 . . Atlas-SNP ASAH1 427 hgsc.bcm.edu hg19 8 17920692 17920692 + Splice_Site SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ASAH1 NM_004315 exon8 c.551+2T>C . TTACTTACCCAAG . 82.0 4.0 147.0 0.0 . 71 . . Atlas-SNP KIF13B 23303 hgsc.bcm.edu hg19 8 28980143 28980143 + Missense_Mutation SNP T T C rs370420261 TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 KIF13B_ENST00000524189,colon,carcinoma,0,1 KIF13B NM_015254 exon29 c.A3500G p.E1167G TGTGTCTCCATCC . 74.0 3.0 136.0 0.0 . 192 . . Atlas-SNP TEX15 56154 hgsc.bcm.edu hg19 8 30705230 30705230 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TEX15 NM_031271 exon1 c.A1304G p.E435G ATGTTCTCTAATG . 81.0 4.0 109.0 0.0 . 350 . . Atlas-SNP WRN 7486 hgsc.bcm.edu hg19 8 30938674 30938674 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . WRN NM_000553 exon9 c.A1131G p.G377G AGATGGAGTAGAA . 95.0 4.0 153.0 0.0 . 116 . . Atlas-SNP HOOK3 84376 hgsc.bcm.edu hg19 8 42812266 42812266 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . HOOK3 NM_032410 exon7 c.T498C p.A166A CTCTGCTGGAAAT . 84.0 4.0 83.0 0.0 . 71 . . Atlas-SNP PXDNL 137902 hgsc.bcm.edu hg19 8 52321315 52321315 + Missense_Mutation SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PXDNL NM_144651 exon17 c.G2869T p.G957W GGTCCCCGGCCAG . 166.0 32.0 118.0 0.0 . 414 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77690642 77690642 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZFHX4 NM_024721 exon4 c.T3292C p.F1098L GAGATCTTTTTTG . 146.0 6.0 82.0 0.0 . 878 . . Atlas-SNP NBN 4683 hgsc.bcm.edu hg19 8 90960118 90960118 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NBN NM_002485 exon12 c.A1848G p.Q616Q ATTTTCTTGCTAA . 83.0 4.0 85.0 0.0 . 86 . . Atlas-SNP RGS22 26166 hgsc.bcm.edu hg19 8 101016167 101016167 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RGS22 NM_015668 exon17 c.A2614G p.T872A AATGAGTCTCAAG . 79.0 6.0 65.0 0.0 . 319 . . Atlas-SNP GRHL2 79977 hgsc.bcm.edu hg19 8 102589654 102589654 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GRHL2 NM_024915 exon7 c.T910C p.F304L GTGGTCTTCAGTG . 77.0 4.0 47.0 0.0 . 68 . . Atlas-SNP ZFPM2 23414 hgsc.bcm.edu hg19 8 106456547 106456547 + Missense_Mutation SNP G G A rs374450510 alternate_allele TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZFPM2 NM_012082 exon3 c.G239A p.G80E CAGATGGGGACAC . 84.0 4.0 61.0 0.0 . 219 . . Atlas-SNP COL22A1 169044 hgsc.bcm.edu hg19 8 139890424 139890424 + Missense_Mutation SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . COL22A1 NM_152888 exon3 c.G227T p.R76L CCCACACGGGTGC . 73.0 22.0 44.0 0.0 . 390 . . Atlas-SNP TSNARE1 203062 hgsc.bcm.edu hg19 8 143399967 143399967 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TSNARE1 NM_145003 exon7 c.A922G p.T308A CAATGGTCTTGTT . 64.0 4.0 65.0 0.0 . 59 . . Atlas-SNP ZNF7 7553 hgsc.bcm.edu hg19 8 146067567 146067567 + Missense_Mutation SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 ZNF7,NS,carcinoma,-2,1 ZNF7 NM_003416 exon5 c.G1075A p.E359K ACTGGGGAGAGGC . 39.0 2.0 59.0 0.0 . 62 . . Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2039821 2039821 + Silent SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 SMARCA2_ENST00000349721,caecum,carcinoma,0,2 SMARCA2 NM_139045 exon4 c.G711A p.Q237Q GCAACAGCAGCCG . 77.0 7.0 76.0 2.0 . 313 . . Atlas-SNP CDC37L1 55664 hgsc.bcm.edu hg19 9 4688579 4688579 + Missense_Mutation SNP A A C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CDC37L1 NM_017913 exon3 c.A481C p.K161Q ATGCAAAAATATG . 160.0 53.0 176.0 0.0 . 19 . . Atlas-SNP KIAA1432 57589 hgsc.bcm.edu hg19 9 5756332 5756332 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . KIAA1432 NM_001135920 exon16 c.T1813C p.C605R GCAGACTGTTCAA . 88.0 4.0 82.0 0.0 . 97 . . Atlas-SNP KIAA1432 57589 hgsc.bcm.edu hg19 9 5772583 5772583 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . KIAA1432 NM_020829 exon24 c.T3636C p.G1212G TATTGGTTCAGCC . 92.0 4.0 103.0 0.0 . 97 . . Atlas-SNP TTC39B 158219 hgsc.bcm.edu hg19 9 15177727 15177727 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TTC39B NM_152574 exon18 c.A1809G p.Q603Q TTCAGCTTGCAAG . 80.0 4.0 111.0 0.0 . 83 . . Atlas-SNP CA9 768 hgsc.bcm.edu hg19 9 35674185 35674185 + Missense_Mutation SNP C C T rs113670057 TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CA9 NM_001216 exon1 c.C229T p.P77S GAGGATCCACCCG . 87.0 6.0 103.0 0.0 . 48 . C|0.500;T|0.500 Atlas-SNP CA9 768 hgsc.bcm.edu hg19 9 35674228 35674228 + Missense_Mutation SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 CA9,NS,carcinoma,0,2 CA9 NM_001216 exon1 c.G272A p.G91E TACCTGGAGAGGA . 82.0 7.0 95.0 0.0 . 48 . . Atlas-SNP ZCCHC7 84186 hgsc.bcm.edu hg19 9 37357124 37357124 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZCCHC7 NM_032226 exon9 c.T1491C p.R497R TCACCGTTCATCA . 95.0 4.0 152.0 0.0 . 56 . . Atlas-SNP FRMPD1 22844 hgsc.bcm.edu hg19 9 37740139 37740139 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FRMPD1 NM_014907 exon15 c.T1614C p.P538P CGAACCTCTCTCT . 99.0 5.0 83.0 0.0 . 237 . . Atlas-SNP TRPM6 140803 hgsc.bcm.edu hg19 9 77386643 77386643 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TRPM6 NM_017662 exon25 c.A3512G p.E1171G ATTCGTTCCTCAC . 88.0 4.0 80.0 0.0 . 377 . . Atlas-SNP GNAQ 2776 hgsc.bcm.edu hg19 9 80537112 80537112 + Missense_Mutation SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 GNAQ,NS,carcinoma,0,2 GNAQ NM_002072 exon2 c.A286T p.T96S TGAGTGTGTCCAT . 156.0 8.0 139.0 1.0 . 384 . . Atlas-SNP ZNF367 195828 hgsc.bcm.edu hg19 9 99180148 99180148 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZNF367 NM_153695 exon1 c.T167C p.L56P GGGATGAGCGGCG . 61.0 4.0 46.0 0.0 . 27 . . Atlas-SNP RAD23B 5887 hgsc.bcm.edu hg19 9 110064350 110064350 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RAD23B NM_002874 exon3 c.A183G p.E61E CAAAGAATATAAA . 87.0 4.0 118.0 0.0 . 31 . . Atlas-SNP CTNNAL1 8727 hgsc.bcm.edu hg19 9 111710491 111710491 + Missense_Mutation SNP G G C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 CTNNAL1,mucosal,malignant_melanoma,0,1 CTNNAL1 NM_003798 exon15 c.C1859G p.S620C TCCTGGGAAGTTT . 27.0 2.0 22.0 0.0 . 51 . . Atlas-SNP C9orf84 158401 hgsc.bcm.edu hg19 9 114454237 114454237 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 C9orf84_ENST00000374287,NS,carcinoma,-2,2 C9orf84 NM_173521 exon25 c.A3828G p.K1276K TACATCTTTATTT . 40.0 3.0 37.0 0.0 . 207 . . Atlas-SNP TTLL11 158135 hgsc.bcm.edu hg19 9 124855592 124855592 + Missense_Mutation SNP C C A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TTLL11 NM_001139442 exon1 c.G106T p.A36S TCACCGCATCGAG . 30.0 13.0 22.0 0.0 . 67 . . Atlas-SNP OR1B1 347169 hgsc.bcm.edu hg19 9 125391426 125391426 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . OR1B1 NM_001004450 exon1 c.A389G p.D130G AGGGGGTCACAGA . 75.0 4.0 48.0 0.0 . 48 . . Atlas-SNP PTGES2 80142 hgsc.bcm.edu hg19 9 130887595 130887595 + Silent SNP C C G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PTGES2 NM_025072 exon2 c.G405C p.V135V CCTGCGCACAGGG . 122.0 54.0 96.0 0.0 . 14 . . Atlas-SNP PTGES2 80142 hgsc.bcm.edu hg19 9 130887600 130887600 + Missense_Mutation SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PTGES2 NM_025072 exon2 c.C400T p.P134S GCACAGGGTTCAC . 123.0 55.0 95.0 0.0 . 14 . . Atlas-SNP SLC27A4 10999 hgsc.bcm.edu hg19 9 131105476 131105476 + Missense_Mutation SNP G G C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SLC27A4 NM_005094 exon2 c.G65C p.W22S TGCCCTGGACCCA . 337.0 163.0 256.0 1.0 . 41 . . Atlas-SNP LRRC8A 56262 hgsc.bcm.edu hg19 9 131670047 131670047 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . LRRC8A NM_001127244 exon3 c.A604G p.S202G ACCGTCAGTGAGG . 84.0 27.0 64.0 0.0 . 69 . . Atlas-SNP UBAC1 10422 hgsc.bcm.edu hg19 9 138836944 138836944 + Missense_Mutation SNP T T G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 .,1 UBAC1 NM_016172 exon7 c.A806C p.E269A CTGGCCTCCTCAT . 21.0 6.0 1.0 0.0 . 40 . . Atlas-SNP SEC16A 9919 hgsc.bcm.edu hg19 9 139368633 139368633 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SEC16A NM_014866 exon3 c.T3435C p.P1145P AAGTGCAGGCACT . 96.0 4.0 74.0 0.0 . 249 . . Atlas-SNP DPP7 29952 hgsc.bcm.edu hg19 9 140008791 140008791 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DPP7 NM_013379 exon3 c.T225C p.T75T GTTCCCAGTGTAG . 34.0 4.0 33.0 0.0 . 22 . . Atlas-SNP DNAJC1 64215 hgsc.bcm.edu hg19 10 22209794 22209794 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DNAJC1 NM_022365 exon4 c.T470C p.L157P AACAAGAGTAATG . 78.0 4.0 83.0 0.0 . 42 . . Atlas-SNP COMMD3-BMI1 0 hgsc.bcm.edu hg19 10 22618054 22618054 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . . NM_001204062 exon13 c.A1077G p.R359R CTGGAGAAGGGTA . 53.0 4.0 53.0 0.0 . . . . Atlas-SNP KIAA1217 56243 hgsc.bcm.edu hg19 10 24669829 24669829 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . KIAA1217 NM_019590 exon3 c.A386G p.Q129R GTCCTCAACCACC . 69.0 4.0 58.0 0.0 . 235 . . Atlas-SNP ANKRD26 22852 hgsc.bcm.edu hg19 10 27294602 27294602 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ANKRD26 NM_014915 exon34 c.G5050A p.D1684N ACTCATCAGTAGA . 91.0 4.0 114.0 0.0 . 179 . . Atlas-SNP RET 5979 hgsc.bcm.edu hg19 10 43610012 43610012 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RET NM_020630 exon11 c.T1964C p.F655S CTGCCTTCTGCAT . 95.0 4.0 101.0 0.0 . 916 . . Atlas-SNP SIRT1 23411 hgsc.bcm.edu hg19 10 69666641 69666641 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SIRT1 NM_012238 exon5 c.A1037G p.N346S CCCAGAACATAGA . 97.0 4.0 137.0 0.0 . 38 . . Atlas-SNP TYSND1 219743 hgsc.bcm.edu hg19 10 71905706 71905706 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TYSND1 NM_173555 exon1 c.G637A p.V213M TGGGCACGGCCCC . 95.0 4.0 44.0 0.0 . 20 . . Atlas-SNP FAM149B1 317662 hgsc.bcm.edu hg19 10 74992815 74992815 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FAM149B1 NM_173348 exon10 c.A1246G p.T416A CAGTCCACCAGGA . 99.0 4.0 101.0 0.0 . 26 . . Atlas-SNP TMEM254 80195 hgsc.bcm.edu hg19 10 81838495 81838495 + Missense_Mutation SNP A A C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TMEM254 NM_001270370 exon1 c.A40C p.S14R CGAGGCAGTCTGT . 36.0 10.0 39.0 0.0 . 1 . . Atlas-SNP CYP2C9 1559 hgsc.bcm.edu hg19 10 96707544 96707544 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CYP2C9 NM_000771 exon4 c.T490C p.C164R TCACCCTGTGATC . 91.0 4.0 122.0 0.0 . 82 . . Atlas-SNP BLNK 29760 hgsc.bcm.edu hg19 10 97966769 97966769 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . BLNK NM_013314 exon11 c.A815G p.E272G TTACCTTCACAAA . 80.0 4.0 114.0 0.0 . 46 . . Atlas-SNP SLIT1 6585 hgsc.bcm.edu hg19 10 98824597 98824597 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SLIT1 NM_003061 exon6 c.A522G p.E174E GGCCCCTTCCTCA . 77.0 4.0 70.0 0.0 . 154 . . Atlas-SNP WNT8B 7479 hgsc.bcm.edu hg19 10 102239648 102239648 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . WNT8B NM_003393 exon3 c.C120T p.S40S TTACTCCAGCAGT . 71.0 4.0 82.0 0.0 . 31 . . Atlas-SNP KCNIP2 30819 hgsc.bcm.edu hg19 10 103588904 103588904 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . KCNIP2 NM_014591 exon4 c.T321C p.G107G CTCCAGACCCTCA . 65.0 5.0 89.0 0.0 . 45 . . Atlas-SNP MXI1 4601 hgsc.bcm.edu hg19 10 112038992 112038992 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MXI1 NM_130439 exon4 c.A492G p.G164G ACTAGGACCAGAC . 99.0 4.0 119.0 0.0 . 17 . . Atlas-SNP ATRNL1 26033 hgsc.bcm.edu hg19 10 117061550 117061550 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ATRNL1 NM_207303 exon17 c.T2815C p.S939P ACCTGCTCCCGTA . 67.0 4.0 75.0 0.0 . 219 . . Atlas-SNP EIF3A 8661 hgsc.bcm.edu hg19 10 120832562 120832562 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . EIF3A NM_003750 exon4 c.T381C p.V127V TAGGAGAACACTA . 42.0 4.0 47.0 0.0 . 142 . . Atlas-SNP MCMBP 79892 hgsc.bcm.edu hg19 10 121595143 121595143 + Nonsense_Mutation SNP G G C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MCMBP NM_024834 exon14 c.C1622G p.S541X ACCGCTGAGAGAA . 83.0 25.0 92.0 0.0 . 49 . . Atlas-SNP ADAM8 101 hgsc.bcm.edu hg19 10 135085698 135085698 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ADAM8 NM_001164489 exon10 c.A956G p.Q319R CTCACCTGGTTCA . 74.0 4.0 88.0 0.0 . 41 . . Atlas-SNP AP2A2 161 hgsc.bcm.edu hg19 11 992507 992507 + Missense_Mutation SNP T T G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . AP2A2 NM_001242837 exon11 c.T1277G p.L426R AGGTGCTGAAGGT . 100.0 4.0 81.0 0.0 . 50 . . Atlas-SNP AP2A2 161 hgsc.bcm.edu hg19 11 1000575 1000575 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . AP2A2 NM_001242837 exon15 c.T2103C p.P701P CGCTCCTGGCTCC . 20.0 4.0 20.0 0.0 . 50 . . Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1093299 1093299 + Silent SNP G G A rs113492997 alternate_allele TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MUC2 NM_002457 exon30 c.G5118A p.T1706T CACTACGGTGACC . 67.0 5.0 50.0 0.0 . 614 . . Atlas-SNP TRIM6-TRIM34 445372 hgsc.bcm.edu hg19 11 5664784 5664784 + Missense_Mutation SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TRIM6-TRIM34 NM_001003819 exon14 c.G2374A p.D792N TTCCTCGACTATG . 218.0 13.0 222.0 0.0 . 68 . . Atlas-SNP NAV2 89797 hgsc.bcm.edu hg19 11 20127228 20127228 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NAV2 NM_001244963 exon37 c.C6973T p.L2325F CATCACCTCAACC . 97.0 4.0 100.0 0.0 . 255 . . Atlas-SNP HIPK3 10114 hgsc.bcm.edu hg19 11 33308364 33308364 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . HIPK3 NM_001048200 exon2 c.A404G p.D135G AGTTGGATAATCA . 93.0 5.0 103.0 0.0 . 92 . . Atlas-SNP ALKBH3 221120 hgsc.bcm.edu hg19 11 43940662 43940662 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ALKBH3 NM_139178 exon9 c.A744G p.E248E CATGGAAGGAGCG . 67.0 4.0 66.0 0.0 . 33 . . Atlas-SNP PHF21A 51317 hgsc.bcm.edu hg19 11 45958088 45958088 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PHF21A NM_001101802 exon16 c.T1638C p.P546P AGTTCCAGGCCAT . 100.0 4.0 80.0 0.0 . 107 . . Atlas-SNP ARHGAP1 392 hgsc.bcm.edu hg19 11 46703710 46703710 + Missense_Mutation SNP G G C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ARHGAP1 NM_004308 exon5 c.C340G p.Q114E CGTACTGGTCCAG . 190.0 37.0 163.0 0.0 . 27 . . Atlas-SNP FAM111B 374393 hgsc.bcm.edu hg19 11 58893058 58893058 + Silent SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FAM111B NM_198947 exon4 c.G1488A p.V496V TATGGTGGGTAAA . 224.0 54.0 240.0 0.0 . 84 . . Atlas-SNP EML3 256364 hgsc.bcm.edu hg19 11 62370679 62370679 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . EML3 NM_153265 exon20 c.T2298C p.Y766Y GCTCTCATAGCGA . 84.0 4.0 58.0 0.0 . 61 . . Atlas-SNP ATL3 25923 hgsc.bcm.edu hg19 11 63398635 63398635 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ATL3 NM_015459 exon12 c.G1416A p.L472L GTTGAACAACTGG . 177.0 44.0 139.0 0.0 . 31 . . Atlas-SNP PLCB3 5331 hgsc.bcm.edu hg19 11 64023957 64023957 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PLCB3 NM_000932 exon9 c.T808C p.S270P CGGCCCTCCCAGG . 248.0 10.0 177.0 0.0 . 103 . . Atlas-SNP KCNK4 50801 hgsc.bcm.edu hg19 11 64060660 64060660 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . KCNK4 NM_033310 exon2 c.A170G p.E57G ACCAGGAGCTGGG . 148.0 6.0 106.0 0.0 . 22 . . Atlas-SNP RPS6KB2 6199 hgsc.bcm.edu hg19 11 67200857 67200857 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RPS6KB2 NM_003952 exon10 c.T845C p.I282T AGATCATCAGGGG . 90.0 4.0 54.0 0.0 . 92 . . Atlas-SNP KRTAP5-8 57830 hgsc.bcm.edu hg19 11 71249121 71249121 + Missense_Mutation SNP C C G rs200585722 bycluster TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . KRTAP5-8 NM_021046 exon1 c.C20G p.S7C GCTGCTCTGGAGG . 207.0 21.0 176.0 0.0 . 28 . . Atlas-SNP ARHGEF17 9828 hgsc.bcm.edu hg19 11 73020389 73020389 + Missense_Mutation SNP A A T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ARHGEF17 NM_014786 exon1 c.A706T p.I236F TCCTCCATCGCCG . 268.0 36.0 216.0 0.0 . 117 . . Atlas-SNP TENM4 26011 hgsc.bcm.edu hg19 11 78482151 78482151 + Nonsense_Mutation SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . . NM_001098816 exon18 c.A2425T p.R809X TACATCTGCCGTT . 175.0 35.0 111.0 0.0 . . . . Atlas-SNP C11orf82 220042 hgsc.bcm.edu hg19 11 82644461 82644461 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . C11orf82 NM_145018 exon6 c.C2081T p.T694I AGATTACCAAAAA . 72.0 34.0 80.0 0.0 . 71 . . Atlas-SNP CCDC67 159989 hgsc.bcm.edu hg19 11 93088638 93088638 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CCDC67 NM_181645 exon3 c.A131G p.E44G CTTTGGAGACACG . 149.0 6.0 106.0 0.0 . 57 . . Atlas-SNP MAML2 84441 hgsc.bcm.edu hg19 11 95825422 95825422 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MAML2 NM_032427 exon2 c.G1773A p.Q591Q TTGCTGCTGTTGC . 201.0 12.0 152.0 0.0 . 94 . . Atlas-SNP MMP3 4314 hgsc.bcm.edu hg19 11 102713260 102713260 + Missense_Mutation SNP A A T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MMP3 NM_002422 exon3 c.T401A p.V134D TTCTCAACAGCAG . 178.0 39.0 154.0 0.0 . 60 . . Atlas-SNP ALKBH8 91801 hgsc.bcm.edu hg19 11 107420510 107420510 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ALKBH8 NM_138775 exon7 c.A740G p.D247G ATCTCATCCTCAA . 91.0 4.0 59.0 0.0 . 88 . . Atlas-SNP POU2AF1 5450 hgsc.bcm.edu hg19 11 111224991 111224991 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . POU2AF1 NM_006235 exon5 c.T766C p.F256L CCTAAAAGCCTTC . 100.0 4.0 103.0 0.0 . 23 . . Atlas-SNP VWA5A 4013 hgsc.bcm.edu hg19 11 124013281 124013281 + Splice_Site SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . VWA5A NM_014622 exon16 c.2154+2T>A . CCGAGGTAAGATT . 69.0 4.0 49.0 0.0 . 102 . . Atlas-SNP OR8D2 283160 hgsc.bcm.edu hg19 11 124189739 124189739 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 OR8D2,NS,lymphoid_neoplasm,0,1 OR8D2 NM_001002918 exon1 c.G355A p.E119K CATATTCCATGGC . 45.0 22.0 55.0 0.0 . 65 . . Atlas-SNP PRDM10 56980 hgsc.bcm.edu hg19 11 129825426 129825426 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PRDM10 NM_020228 exon4 c.A275G p.Q92R GCATCCTGTTGGA . 97.0 4.0 105.0 0.0 . 120 . . Atlas-SNP NCAPD3 23310 hgsc.bcm.edu hg19 11 134072793 134072793 + Silent SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NCAPD3 NM_015261 exon13 c.C1533T p.S511S TTGGTAGGAAAAA . 80.0 8.0 109.0 0.0 . 141 . . Atlas-SNP CSDA 8531 hgsc.bcm.edu hg19 12 10853935 10853935 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CSDA NM_003651 exon9 c.A1071G p.A357A AGTTGGTGCTTCA . 102.0 5.0 86.0 0.0 . 35 . . Atlas-SNP WBP11 51729 hgsc.bcm.edu hg19 12 14954258 14954258 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . WBP11 NM_016312 exon2 c.A60G p.Q20Q ACGGGCTTGGTCT . 97.0 4.0 110.0 0.0 . 66 . . Atlas-SNP PLCZ1 89869 hgsc.bcm.edu hg19 12 18876412 18876412 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PLCZ1 NM_033123 exon4 c.T200C p.I67T TGCGTGATAATTC . 69.0 4.0 92.0 0.0 . 107 . . Atlas-SNP ITPR2 3709 hgsc.bcm.edu hg19 12 26647249 26647249 + Missense_Mutation SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ITPR2 NM_002223 exon39 c.A5207T p.D1736V ATCTTATCTGAAT . 64.0 19.0 54.0 0.0 . 270 . . Atlas-SNP BICD1 636 hgsc.bcm.edu hg19 12 32458899 32458899 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . BICD1 NM_001714 exon4 c.A848G p.D283G ATGATGACAAAAT . 70.0 4.0 77.0 0.0 . 89 . . Atlas-SNP DNAJC22 79962 hgsc.bcm.edu hg19 12 49743308 49743308 + Missense_Mutation SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DNAJC22 NM_024902 exon2 c.T653A p.F218Y GCTCCTTCTTGAA . 121.0 8.0 129.0 0.0 . 29 . . Atlas-SNP LARP4 113251 hgsc.bcm.edu hg19 12 50822863 50822863 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 LARP4,caecum,carcinoma,0,1 LARP4 NM_001170808 exon3 c.T312C p.Y104Y AATATATGATGTT . 33.0 2.0 52.0 0.0 . 58 . . Atlas-SNP KRT77 374454 hgsc.bcm.edu hg19 12 53086340 53086340 + Missense_Mutation SNP A A C rs200694410 TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 .,1 KRT77 NM_175078 exon7 c.T1292G p.L431R TCCTCCAGGTCCT . 49.0 5.0 48.0 0.0 . 58 . . Atlas-SNP SPRYD3 84926 hgsc.bcm.edu hg19 12 53462069 53462069 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SPRYD3 NM_032840 exon7 c.A713G p.K238R TTGCCCTTCCCTA . 73.0 4.0 82.0 0.0 . 29 . . Atlas-SNP MDM2 4193 hgsc.bcm.edu hg19 12 69207366 69207366 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 MDM2_ENST00000462284,bladder,carcinoma,0,2 MDM2 NM_002392 exon3 c.A132G p.L44L GTTATTAAAGTCT . 65.0 4.0 106.0 0.0 . 92 . . Atlas-SNP POC1B 282809 hgsc.bcm.edu hg19 12 89865461 89865461 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . POC1B NM_172240 exon6 c.T606C p.A202A TGCTGAAGCTATG . 90.0 4.0 83.0 0.0 . 41 . . Atlas-SNP POC1B 282809 hgsc.bcm.edu hg19 12 89885846 89885846 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . POC1B NM_172240 exon4 c.A319G p.S107G CTACACTTCGAAC . 82.0 4.0 89.0 0.0 . 41 . . Atlas-SNP PLXNC1 10154 hgsc.bcm.edu hg19 12 94697585 94697585 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PLXNC1 NM_005761 exon29 c.A4440G p.E1480E CAAAGAAGAAGTA . 81.0 4.0 87.0 0.0 . 135 . . Atlas-SNP APAF1 317 hgsc.bcm.edu hg19 12 99056329 99056329 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . APAF1 NM_181868 exon6 c.T806C p.V269A AGAGTGTTACAGA . 80.0 4.0 110.0 0.0 . 111 . . Atlas-SNP UHRF1BP1L 23074 hgsc.bcm.edu hg19 12 100497704 100497704 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . UHRF1BP1L NM_015054 exon3 c.A233G p.H78R ATGGGATGTGTTT . 91.0 4.0 149.0 0.0 . 144 . . Atlas-SNP TDG 6996 hgsc.bcm.edu hg19 12 104379508 104379508 + Splice_Site SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TDG NM_003211 exon9 c.1090+2T>C . GCTAAGTATGGTT . 93.0 27.0 129.0 0.0 . 43 . . Atlas-SNP RIC8B 55188 hgsc.bcm.edu hg19 12 107237670 107237670 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RIC8B NM_018157 exon6 c.T1106C p.L369S TCAGCTTATTAAC . 57.0 4.0 49.0 0.0 . 51 . . Atlas-SNP MTERFD3 80298 hgsc.bcm.edu hg19 12 107371779 107371779 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MTERFD3 NM_001033050 exon3 c.T714C p.G238G GGTGAAACCTTGC . 71.0 5.0 71.0 0.0 . 32 . . Atlas-SNP ATXN2 6311 hgsc.bcm.edu hg19 12 111926327 111926327 + Silent SNP T T C rs138912353 alternate_allele TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ATXN2 NM_002973 exon15 c.A2673G p.A891A TTTACATGCTGGG . 181.0 54.0 198.0 0.0 . 99 . T|1.000;G|0.000 Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112613662 112613662 + Silent SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . . NM_001109662 exon66 c.C11070T p.V3690V CTCAGGGACTGGT . 141.0 34.0 176.0 0.0 . . . . Atlas-SNP SETD1B 23067 hgsc.bcm.edu hg19 12 122252024 122252024 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SETD1B NM_015048 exon6 c.T1903C p.S635P CAGTCCTCAGGCG . 86.0 4.0 84.0 0.0 . 105 . . Atlas-SNP PIWIL1 9271 hgsc.bcm.edu hg19 12 130834496 130834496 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PIWIL1 NM_004764 exon9 c.T1028C p.L343S GCTTCTTAGAATA . 45.0 4.0 63.0 0.0 . 157 . . Atlas-SNP PARP4 143 hgsc.bcm.edu hg19 13 25044076 25044076 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PARP4 NM_006437 exon16 c.T2002C p.C668R AGCCACACACAGC . 91.0 4.0 75.0 0.0 . 142 . . Atlas-SNP RNF6 6049 hgsc.bcm.edu hg19 13 26788190 26788190 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RNF6 NM_183043 exon5 c.A1829G p.Q610R TCAATCTGCTCTT . 99.0 4.0 116.0 0.0 . 68 . . Atlas-SNP B3GALTL 145173 hgsc.bcm.edu hg19 13 31822032 31822032 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . B3GALTL NM_194318 exon6 c.T388C p.F130L ATTTTCTTCTGTG . 85.0 4.0 90.0 0.0 . 48 . . Atlas-SNP DCLK1 9201 hgsc.bcm.edu hg19 13 36348674 36348674 + Missense_Mutation SNP A A T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DCLK1 NM_001195416 exon13 c.T1300A p.X434K CTTATTAAAAGGG . 102.0 28.0 130.0 0.0 . 350 . . Atlas-SNP RCBTB2 1102 hgsc.bcm.edu hg19 13 49070340 49070340 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RCBTB2 NM_001268 exon14 c.A1502G p.K501R TCATACTTCACCG . 69.0 4.0 76.0 0.0 . 62 . . Atlas-SNP DIAPH3 81624 hgsc.bcm.edu hg19 13 60557952 60557952 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DIAPH3 NM_001042517 exon13 c.A1431G p.P477P GAAGTCTGGATCC . 65.0 4.0 86.0 0.0 . 139 . . Atlas-SNP ABCC4 10257 hgsc.bcm.edu hg19 13 95858953 95858953 + Missense_Mutation SNP C C T rs377022090 TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ABCC4 NM_005845 exon8 c.G994A p.V332M CAAACACGATGAT . 76.0 26.0 95.0 0.0 . 248 . . Atlas-SNP UGGT2 55757 hgsc.bcm.edu hg19 13 96642227 96642227 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . UGGT2 NM_020121 exon8 c.G931A p.D311N CTATACCTTGTAG . 76.0 23.0 54.0 0.0 . 127 . . Atlas-SNP IPO5 3843 hgsc.bcm.edu hg19 13 98645235 98645235 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . IPO5 NM_002271 exon10 c.T813C p.P271P GCGTCCTCACTTG . 80.0 4.0 97.0 0.0 . 90 . . Atlas-SNP MYO16 23026 hgsc.bcm.edu hg19 13 109661386 109661386 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 .,9 MYO16 NM_001198950 exon22 c.T2584C p.F862L TTGGACTTTTTTT . 28.0 2.0 42.0 0.0 . 285 . . Atlas-SNP OR11H2 79334 hgsc.bcm.edu hg19 14 20181616 20181616 + Missense_Mutation SNP G G T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . . NM_001197287 exon2 c.C460A p.H154N AGAGATGCCCAGT . 414.0 158.0 372.0 0.0 . . . . Atlas-SNP TEP1 7011 hgsc.bcm.edu hg19 14 20853228 20853228 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TEP1 NM_007110 exon21 c.A3023G p.E1008G ATCACCTCCATCT . 107.0 5.0 64.0 0.0 . 224 . . Atlas-SNP ARHGAP5 394 hgsc.bcm.edu hg19 14 32560165 32560165 + Missense_Mutation SNP A A T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ARHGAP5 NM_001173 exon2 c.A290T p.E97V AAACAGAGTTCAT . 68.0 16.0 89.0 0.0 . 166 . . Atlas-SNP SPTSSA 171546 hgsc.bcm.edu hg19 14 34931375 34931375 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . . NM_138288 exon1 c.G39A p.M13I CCAGGACATCTGC . 149.0 25.0 120.0 0.0 . . . . Atlas-SNP KTN1 3895 hgsc.bcm.edu hg19 14 56138558 56138558 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . KTN1 NM_001079521 exon37 c.A3494G p.K1165R AATGGAAAGTTAA . 99.0 4.0 132.0 0.0 . 147 . . Atlas-SNP PELI2 57161 hgsc.bcm.edu hg19 14 56645115 56645115 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PELI2 NM_021255 exon2 c.A140G p.K47R TCTACAAGCGGCC . 91.0 4.0 106.0 0.0 . 55 . . Atlas-SNP C14orf37 145407 hgsc.bcm.edu hg19 14 58605485 58605485 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . C14orf37 NM_001001872 exon2 c.G592A p.E198K CTCCTTCCTGACT . 94.0 4.0 116.0 0.0 . 87 . . Atlas-SNP PLEKHG3 26030 hgsc.bcm.edu hg19 14 65208191 65208191 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PLEKHG3 NM_015549 exon14 c.C1788T p.A596A CCTGGCCCGGCAT . 61.0 31.0 58.0 0.0 . 89 . . Atlas-SNP GPHN 10243 hgsc.bcm.edu hg19 14 67243210 67243210 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GPHN NM_001024218 exon3 c.A172G p.I58V TACAAGATAGTAC . 85.0 4.0 108.0 0.0 . 79 . . Atlas-SNP ZFYVE26 23503 hgsc.bcm.edu hg19 14 68241773 68241773 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZFYVE26 NM_015346 exon27 c.T5280C p.P1760P TGATCTAGGGAGG . 79.0 4.0 65.0 0.0 . 223 . . Atlas-SNP ELMSAN1 91748 hgsc.bcm.edu hg19 14 74196575 74196575 + Silent SNP A A C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . . NM_194278 exon4 c.T1863G p.P621P GACGGGAGGGGCG . 118.0 56.0 98.0 0.0 . . . . Atlas-SNP PTGR2 145482 hgsc.bcm.edu hg19 14 74325597 74325597 + Missense_Mutation SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PTGR2 NM_152444 exon2 c.G32A p.R11Q ATTCTCGACCTGG . 117.0 5.0 118.0 0.0 . 21 . . Atlas-SNP TDP1 55775 hgsc.bcm.edu hg19 14 90433726 90433726 + Missense_Mutation SNP G G T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TDP1 NM_018319 exon5 c.G619T p.D207Y TGCTTTGACGTGG . 197.0 87.0 271.0 0.0 . 47 . . Atlas-SNP CPSF2 53981 hgsc.bcm.edu hg19 14 92624139 92624139 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CPSF2 NM_017437 exon13 c.T1732C p.C578R GAGTGCTGTCGCG . 119.0 5.0 126.0 0.0 . 63 . . Atlas-SNP C14orf177 283598 hgsc.bcm.edu hg19 14 99182534 99182534 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . C14orf177 NM_182560 exon3 c.T6C p.H2H GATGCATCGGAAA . 6.0 5.0 0.0 0.0 . 37 . . Atlas-SNP TYRO3 7301 hgsc.bcm.edu hg19 15 41865543 41865543 + Missense_Mutation SNP G G C rs116540200 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 TYRO3_ENST00000263798,colon,carcinoma,0,3 TYRO3 NM_006293 exon17 c.G2023C p.G675R GACTTCGGACTCT . 102.0 35.0 112.0 0.0 . 169 . G|0.995;A|0.005 Atlas-SNP CDAN1 146059 hgsc.bcm.edu hg19 15 43027504 43027504 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CDAN1 NM_138477 exon5 c.G1012A p.V338M CAGTCACCATCCT . 60.0 4.0 53.0 0.0 . 70 . . Atlas-SNP CEP152 22995 hgsc.bcm.edu hg19 15 49073394 49073394 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CEP152 NM_014985 exon12 c.A1576G p.S526G CATACCTGGTAAC . 91.0 4.0 108.0 0.0 . 145 . . Atlas-SNP MYO5A 4644 hgsc.bcm.edu hg19 15 52605952 52605952 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MYO5A NM_000259 exon41 c.G5509A p.A1837T CTAGTGCGAGGGA . 70.0 4.0 74.0 0.0 . 145 . . Atlas-SNP RNF111 54778 hgsc.bcm.edu hg19 15 59377873 59377873 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RNF111 NM_001270528 exon10 c.A2466G p.E822E AATTGAAGCTGGA . 91.0 5.0 83.0 0.0 . 179 . . Atlas-SNP RORA 6095 hgsc.bcm.edu hg19 15 60907095 60907095 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RORA NM_002943 exon2 c.A269G p.K90R GCACCTTTTCTCA . 77.0 4.0 103.0 0.0 . 114 . . Atlas-SNP DAPK2 23604 hgsc.bcm.edu hg19 15 64263741 64263741 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DAPK2 NM_014326 exon4 c.T334C p.F112L AATCGAAGAGCTC . 84.0 4.0 83.0 0.0 . 31 . . Atlas-SNP DPP8 54878 hgsc.bcm.edu hg19 15 65772582 65772582 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DPP8 NM_197960 exon11 c.A1322G p.E441G GTTGTTTCTTCAT . 57.0 4.0 84.0 0.0 . 78 . . Atlas-SNP MYO9A 4649 hgsc.bcm.edu hg19 15 72122595 72122595 + Missense_Mutation SNP G G A rs371514628 TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 MYO9A,colon,carcinoma,0,1 MYO9A NM_006901 exon40 c.C6895T p.R2299W GCAACCGAACTAC . 86.0 19.0 108.0 0.0 . 203 . . Atlas-SNP NEIL1 79661 hgsc.bcm.edu hg19 15 75641528 75641528 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NEIL1 NM_001256552 exon2 c.A540G p.P180P GCTGCCACGCCAT . 47.0 4.0 51.0 0.0 . 36 . . Atlas-SNP AKAP13 11214 hgsc.bcm.edu hg19 15 86123972 86123972 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . AKAP13 NM_007200 exon7 c.C2673T p.D891D CACTGACTCTTCC . 73.0 10.0 92.0 0.0 . 394 . . Atlas-SNP LRRK1 79705 hgsc.bcm.edu hg19 15 101606304 101606304 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . LRRK1 NM_024652 exon32 c.T5662C p.S1888P GCTGCCTCCGACA . 116.0 5.0 115.0 0.0 . 310 . . Atlas-SNP CHSY1 22856 hgsc.bcm.edu hg19 15 101717856 101717856 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CHSY1 NM_014918 exon3 c.T2146C p.W716R GCCCCCAGCCTTG . 88.0 4.0 106.0 0.0 . 60 . . Atlas-SNP TARSL2 123283 hgsc.bcm.edu hg19 15 102224289 102224289 + Missense_Mutation SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TARSL2 NM_152334 exon12 c.A1639T p.T547S CCACTGTGCAAAA . 153.0 43.0 154.0 0.0 . 63 . . Atlas-SNP SSTR5 6755 hgsc.bcm.edu hg19 16 1129760 1129760 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SSTR5 NM_001172560 exon2 c.T892C p.C298R AACAGCTGTGCCA . 110.0 6.0 90.0 0.0 . 36 . . Atlas-SNP MEIOB 254528 hgsc.bcm.edu hg19 16 1884295 1884295 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . . NM_001163560 exon14 c.G1378A p.E460K TTGCCTCAGTAGG . 84.0 4.0 102.0 0.0 . . . . Atlas-SNP EMP2 2013 hgsc.bcm.edu hg19 16 10626827 10626827 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . EMP2 NM_001424 exon5 c.T439C p.W147R CCACCCACGCCAG . 69.0 4.0 60.0 0.0 . 21 . . Atlas-SNP TEKT5 146279 hgsc.bcm.edu hg19 16 10783830 10783830 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TEKT5 NM_144674 exon2 c.T617C p.V206A TCATGGACCAAAT . 98.0 4.0 101.0 0.0 . 66 . . Atlas-SNP DCUN1D3 123879 hgsc.bcm.edu hg19 16 20871607 20871607 + Missense_Mutation SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DCUN1D3 NM_173475 exon3 c.A516T p.E172D TTTGGCTTCTGTT . 79.0 4.0 71.0 0.0 . 29 . . Atlas-SNP TAOK2 9344 hgsc.bcm.edu hg19 16 29998852 29998852 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TAOK2 NM_016151 exon16 c.C3259T p.R1087W TGGTTGCGGGTTC . 73.0 31.0 76.0 0.0 . 142 . . Atlas-SNP PHKB 5257 hgsc.bcm.edu hg19 16 47695696 47695696 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PHKB NM_000293 exon23 c.T2263C p.F755L CCCAACTTCATCA . 82.0 4.0 95.0 0.0 . 298 . . Atlas-SNP ABCC12 94160 hgsc.bcm.edu hg19 16 48120709 48120709 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ABCC12 NM_033226 exon26 c.G3657A p.E1219E GTGACTCTCAAAG . 92.0 4.0 73.0 0.0 . 190 . . Atlas-SNP CHD9 80205 hgsc.bcm.edu hg19 16 53338416 53338416 + Silent SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CHD9 NM_025134 exon31 c.T6498A p.S2166S TTCTTCTTCATCT . 302.0 21.0 271.0 0.0 . 203 . . Atlas-SNP CHD9 80205 hgsc.bcm.edu hg19 16 53338419 53338419 + Silent SNP A A T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CHD9 NM_025134 exon31 c.A6501T p.S2167S TTCTTCATCTTCA . 292.0 14.0 275.0 0.0 . 203 . . Atlas-SNP RBL2 5934 hgsc.bcm.edu hg19 16 53513887 53513887 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RBL2 NM_005611 exon19 c.A2865G p.E955E AACAGAACTAAAC . 95.0 4.0 129.0 0.0 . 115 . . Atlas-SNP NQO1 1728 hgsc.bcm.edu hg19 16 69748881 69748881 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NQO1 NM_000903 exon4 c.A403G p.K135E GTCCTTTGTCATA . 115.0 5.0 89.0 0.0 . 21 . . Atlas-SNP CENPN 55839 hgsc.bcm.edu hg19 16 81066238 81066238 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CENPN NM_001100625 exon11 c.A1001G p.D334G CCCAGGACCCGAG . 59.0 4.0 75.0 0.0 . 84 . . Atlas-SNP PKD1L2 114780 hgsc.bcm.edu hg19 16 81236287 81236287 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PKD1L2 NM_001076780 exon6 c.T961C p.F321L CAGCAAACACGGT . 89.0 4.0 85.0 0.0 . 361 . . Atlas-SNP CDH13 1012 hgsc.bcm.edu hg19 16 83378493 83378493 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CDH13 NM_001220488 exon7 c.T804C p.N268N TGTCAATGGCAAA . 99.0 4.0 111.0 0.0 . 97 . . Atlas-SNP ZNF778 197320 hgsc.bcm.edu hg19 16 89293512 89293512 + Silent SNP T T C rs376986456 alternate_allele TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZNF778 NM_001201407 exon7 c.T816C p.V272V ACCTGTTGAAATG . 81.0 4.0 90.0 0.0 . 67 . . Atlas-SNP SPG7 6687 hgsc.bcm.edu hg19 16 89598432 89598432 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SPG7 NM_199367 exon8 c.T1108C p.F370L GTGCCCTTCCTGG . 81.0 4.0 78.0 0.0 . 75 . . Atlas-SNP ASGR1 432 hgsc.bcm.edu hg19 17 7077757 7077757 + Silent SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ASGR1 NM_001671 exon6 c.C378T p.H126H CTTCACGTGGAGC . 267.0 90.0 194.0 0.0 . 20 . . Atlas-SNP NEURL4 84461 hgsc.bcm.edu hg19 17 7219555 7219555 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NEURL4 NM_032442 exon29 c.T4576C p.S1526P CAGCGGAAGGGGG . 89.0 4.0 71.0 0.0 . 192 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7671282 7671282 + Missense_Mutation SNP G G C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DNAH2 NM_020877 exon22 c.G3740C p.W1247S ATGAGTGGAAGAC . 95.0 4.0 118.0 0.0 . 498 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7671482 7671482 + Missense_Mutation SNP G G T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DNAH2 NM_020877 exon23 c.G3838T p.D1280Y GCTCAGGACCGAA . 68.0 5.0 64.0 0.0 . 498 . . Atlas-SNP ALOX12B 242 hgsc.bcm.edu hg19 17 7984440 7984440 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ALOX12B NM_001139 exon3 c.A418G p.K140E CCTGCTTGGCTCT . 83.0 4.0 78.0 0.0 . 61 . . Atlas-SNP NCOR1 9611 hgsc.bcm.edu hg19 17 15935796 15935796 + Silent SNP G G C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NCOR1 NM_006311 exon46 c.C7137G p.G2379G AGTTGAGCCTGAC . 49.0 25.0 77.0 0.0 . 240 . . Atlas-SNP MFAP4 4239 hgsc.bcm.edu hg19 17 19288768 19288768 + Splice_Site SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MFAP4 NM_002404 exon5 c.241-1G>A . GAAAACCTGGAGC . 77.0 4.0 119.0 0.0 . 33 . . Atlas-SNP KCNJ18 100134444 hgsc.bcm.edu hg19 17 21319654 21319654 + Missense_Mutation SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . . NM_001194958 exon3 c.G1000A p.E334K TTCGAGGAGAAGA . 152.0 15.0 172.0 0.0 . . . . Atlas-SNP MYO18A 399687 hgsc.bcm.edu hg19 17 27421007 27421007 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MYO18A NM_078471 exon31 c.T4812C p.C1604C CTTCTGACACGAC . 76.0 4.0 64.0 0.0 . 217 . . Atlas-SNP C17orf75 64149 hgsc.bcm.edu hg19 17 30662412 30662412 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . C17orf75 NM_022344 exon6 c.A599G p.E200G ACATCCTCAAACC . 96.0 4.0 118.0 0.0 . 23 . . Atlas-SNP TAF15 8148 hgsc.bcm.edu hg19 17 34171800 34171800 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TAF15 NM_139215 exon15 c.A1497G p.G499G CCGAGGAGGCTAT . 66.0 5.0 74.0 0.0 . 46 . . Atlas-SNP TOP2A 7153 hgsc.bcm.edu hg19 17 38572733 38572733 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TOP2A NM_001067 exon3 c.T209C p.I70T TAGTTAATGCCAA . 73.0 4.0 138.0 0.0 . 124 . . Atlas-SNP KRT26 353288 hgsc.bcm.edu hg19 17 38926059 38926059 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . KRT26 NM_181539 exon5 c.T916C p.L306L GTTTTAATTCGGT . 416.0 32.0 478.0 0.0 . 49 . . Atlas-SNP MAPT 4137 hgsc.bcm.edu hg19 17 44049306 44049306 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MAPT NM_001123066 exon3 c.C215T p.A72V CAACAGCGGAAGG . 52.0 16.0 48.0 0.0 . 135 . . Atlas-SNP ITGB3 3690 hgsc.bcm.edu hg19 17 45384933 45384933 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ITGB3 NM_000212 exon14 c.T2231C p.L744P AACTCCTCATCAC . 113.0 5.0 127.0 0.0 . 157 . . Atlas-SNP HOXB13 10481 hgsc.bcm.edu hg19 17 46805467 46805467 + Silent SNP C C T rs199561305 by1000genomes;alternate_allele TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . HOXB13 NM_006361 exon1 c.G489A p.L163L AGGCAACAGGGAG . 94.0 4.0 104.0 0.0 . 28 . C|1.000;G|0.000 Atlas-SNP SCPEP1 59342 hgsc.bcm.edu hg19 17 55058493 55058493 + Missense_Mutation SNP G G A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SCPEP1 NM_021626 exon2 c.G127A p.V43M GATTATGTGACGG . 168.0 49.0 218.0 0.0 . 35 . . Atlas-SNP BRIP1 83990 hgsc.bcm.edu hg19 17 59871069 59871069 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . BRIP1 NM_032043 exon10 c.A1362G p.E454E AAGATATTCAGCG . 64.0 5.0 68.0 0.0 . 237 . . Atlas-SNP HELZ 9931 hgsc.bcm.edu hg19 17 65185736 65185736 + Missense_Mutation SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . HELZ NM_014877 exon11 c.A833T p.H278L GTCTGGTGGGATT . 146.0 35.0 195.0 0.0 . 160 . . Atlas-SNP ABCA6 23460 hgsc.bcm.edu hg19 17 67085652 67085652 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ABCA6 NM_080284 exon27 c.A3560G p.E1187G TTTGCCTCTGGAA . 73.0 4.0 66.0 0.0 . 210 . . Atlas-SNP ABCA10 10349 hgsc.bcm.edu hg19 17 67148261 67148261 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ABCA10 NM_080282 exon37 c.A4320G p.K1440K TTTCATTTTTATT . 78.0 4.0 93.0 0.0 . 209 . . Atlas-SNP TMC8 147138 hgsc.bcm.edu hg19 17 76129494 76129494 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TMC8 NM_152468 exon6 c.C539T p.T180I CCTTCACCAACAC . 115.0 5.0 141.0 0.0 . 44 . . Atlas-SNP DLGAP1 9229 hgsc.bcm.edu hg19 18 3742408 3742408 + Missense_Mutation SNP G G T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DLGAP1 NM_001242761 exon6 c.C1277A p.A426E AAGCCTGCAGGGT . 125.0 42.0 148.0 0.0 . 201 . . Atlas-SNP ANKRD30B 374860 hgsc.bcm.edu hg19 18 14791433 14791433 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ANKRD30B NM_001145029 exon16 c.T1768C p.Y590H GATGTGTATTTAC . 246.0 93.0 314.0 0.0 . 237 . . Atlas-SNP GREB1L 80000 hgsc.bcm.edu hg19 18 19095498 19095498 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GREB1L NM_001142966 exon29 c.C5022T p.S1674S GAGCAGCAAGCTG . 95.0 4.0 129.0 0.0 . 69 . . Atlas-SNP TRAPPC8 22878 hgsc.bcm.edu hg19 18 29446819 29446819 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TRAPPC8 NM_014939 exon18 c.T2583C p.C861C TGTGTGACATCCG . 59.0 4.0 62.0 0.0 . 126 . . Atlas-SNP KATNAL2 83473 hgsc.bcm.edu hg19 18 44626699 44626699 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . KATNAL2 NM_031303 exon14 c.C1233T p.I411I GAAGATCTTTGAT . 36.0 7.0 47.0 0.0 . 64 . . Atlas-SNP MAPK4 5596 hgsc.bcm.edu hg19 18 48190780 48190780 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MAPK4 NM_002747 exon2 c.A452G p.K151R ACCTGAAGCCCGC . 79.0 4.0 93.0 0.0 . 75 . . Atlas-SNP STARD6 147323 hgsc.bcm.edu hg19 18 51880863 51880863 + Silent SNP A A C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . STARD6 NM_139171 exon1 c.T81G p.V27V AGTTTTAACCACT . 170.0 55.0 192.0 0.0 . 19 . . Atlas-SNP ATP8B1 5205 hgsc.bcm.edu hg19 18 55351288 55351288 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ATP8B1 NM_005603 exon15 c.T1610C p.V537A ACCATGACTGTGT . 93.0 6.0 62.0 0.0 . 126 . . Atlas-SNP PTBP1 5725 hgsc.bcm.edu hg19 19 810762 810762 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PTBP1 NM_002819 exon15 c.T1610C p.L537P TTGACCTGCACAA . 39.0 4.0 56.0 0.0 . 43 . . Atlas-SNP MED16 10025 hgsc.bcm.edu hg19 19 868154 868154 + Missense_Mutation SNP A A G rs372252782 TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MED16 NM_005481 exon16 c.T2581C p.S861P TGGGAGAGTGGTG . 80.0 4.0 92.0 0.0 . 61 . . Atlas-SNP GPX4 2879 hgsc.bcm.edu hg19 19 1104930 1104930 + Splice_Site SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GPX4 NM_001039848 exon1 c.195+2T>C . ACCCGGTGCGCGC . 88.0 4.0 93.0 0.0 . 9 . . Atlas-SNP RAX2 84839 hgsc.bcm.edu hg19 19 3771558 3771558 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RAX2 NM_032753 exon2 c.A183G p.A61A CTTGGCTGCCAGC . 76.0 4.0 62.0 0.0 . 4 . . Atlas-SNP PLIN4 729359 hgsc.bcm.edu hg19 19 4510594 4510594 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PLIN4 NM_001080400 exon3 c.G3336A p.G1112G GGCGGCCCCTTGG . 89.0 27.0 104.0 0.0 . 191 . . Atlas-SNP EMR1 2015 hgsc.bcm.edu hg19 19 6921786 6921786 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . EMR1 NM_001256253 exon14 c.A1683G p.R561R TGGAAGATGGACA . 96.0 4.0 111.0 0.0 . 153 . . Atlas-SNP ZNF266 10781 hgsc.bcm.edu hg19 19 9528560 9528560 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZNF266 NM_001271314 exon9 c.T59C p.L20P GAGATCAGACTGG . 91.0 4.0 96.0 0.0 . 65 . . Atlas-SNP DNM2 1785 hgsc.bcm.edu hg19 19 10906847 10906847 + Missense_Mutation SNP T T G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DNM2 NM_004945 exon10 c.T1307G p.I436S AGCTAATCAATAC . 138.0 42.0 162.0 0.0 . 175 . . Atlas-SNP PIK3R2 5296 hgsc.bcm.edu hg19 19 18279290 18279290 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PIK3R2 NM_005027 exon14 c.T1742C p.L581P GGTGGCTCACCCA . 54.0 5.0 53.0 0.0 . 48 . . Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36210419 36210419 + Missense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MLL4 NM_014727 exon2 c.C412T p.R138C TCCCTGCGCTCTG . 51.0 4.0 68.0 0.0 . 229 . . Atlas-SNP ZNF829 374899 hgsc.bcm.edu hg19 19 37383205 37383205 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZNF829 NM_001171979 exon6 c.A731G p.K244R AAGGTCTTTCCAC . 60.0 4.0 59.0 0.0 . 70 . . Atlas-SNP ZNF404 342908 hgsc.bcm.edu hg19 19 44384170 44384170 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZNF404 NM_001033719 exon1 c.T119C p.V40A AATGAGACCAAGT . 92.0 4.0 76.0 0.0 . 46 . . Atlas-SNP ZFP112 7771 hgsc.bcm.edu hg19 19 44831614 44831614 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZFP112 NM_001083335 exon5 c.A2714G p.H905R TTTCTGTGTAGAT . 58.0 4.0 79.0 0.0 . 219 . . Atlas-SNP CLPTM1 1209 hgsc.bcm.edu hg19 19 45488528 45488528 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CLPTM1 NM_001294 exon6 c.A639G p.T213T GCTGACAGGAGAG . 75.0 34.0 80.0 0.0 . 109 . . Atlas-SNP CD3EAP 10849 hgsc.bcm.edu hg19 19 45912491 45912491 + Missense_Mutation SNP A A C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CD3EAP NM_012099 exon3 c.A1265C p.K422T CCACCAAGAAGAA . 47.0 4.0 51.0 0.0 . 27 . . Atlas-SNP CD3EAP 10849 hgsc.bcm.edu hg19 19 45912492 45912492 + Missense_Mutation SNP G G C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CD3EAP NM_012099 exon3 c.G1266C p.K422N CACCAAGAAGAAG . 50.0 6.0 51.0 0.0 . 27 . . Atlas-SNP SYMPK 8189 hgsc.bcm.edu hg19 19 46319817 46319817 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SYMPK NM_004819 exon25 c.T3277C p.S1093P TGATGGAGTTAGG . 106.0 5.0 108.0 0.0 . 104 . . Atlas-SNP IGFL1 374918 hgsc.bcm.edu hg19 19 46733725 46733725 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . IGFL1 NM_198541 exon3 c.A274G p.N92D CTGATAAACCAGA . 65.0 4.0 82.0 0.0 . 10 . . Atlas-SNP CALM3 808 hgsc.bcm.edu hg19 19 47111479 47111479 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CALM3 NM_005184 exon3 c.T60C p.F20F CCTCTTTGACAAG . 63.0 4.0 87.0 0.0 . 9 . . Atlas-SNP EHD2 30846 hgsc.bcm.edu hg19 19 48219967 48219967 + Missense_Mutation SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . EHD2 NM_014601 exon2 c.T98A p.L33Q CGAAGCTGCTGCC . 135.0 37.0 178.0 0.0 . 59 . . Atlas-SNP SPHK2 56848 hgsc.bcm.edu hg19 19 49132828 49132828 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SPHK2 NM_020126 exon7 c.A1763G p.E588G CCATGGAGCGTGG . 62.0 4.0 46.0 0.0 . 62 . . Atlas-SNP HRC 3270 hgsc.bcm.edu hg19 19 49657920 49657920 + Missense_Mutation SNP C C T rs200730671 TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . HRC NM_002152 exon1 c.G575A p.G192E TCTTCTCCTTCAT . 137.0 7.0 150.0 0.0 . 85 . . Atlas-SNP ZNF320 162967 hgsc.bcm.edu hg19 19 53384894 53384894 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZNF320 NM_207333 exon4 c.A485G p.K162R TCACATTTGTAAG . 68.0 4.0 96.0 0.0 . 67 . . Atlas-SNP EPS8L1 54869 hgsc.bcm.edu hg19 19 55591536 55591536 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . EPS8L1 NM_133180 exon6 c.T319C p.C107R GTGCGCTGTGACG . 70.0 4.0 55.0 0.0 . 122 . . Atlas-SNP EPS8L1 54869 hgsc.bcm.edu hg19 19 55592800 55592800 + Silent SNP C C A rs146217963 alternate_allele TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . EPS8L1 NM_133180 exon8 c.C714A p.A238A CTCGGCCTCCCCG . 95.0 38.0 88.0 0.0 . 122 . C|1.000;G|0.000 Atlas-SNP HSPBP1 23640 hgsc.bcm.edu hg19 19 55790905 55790905 + Silent SNP T T G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 HSPBP1,NS,carcinoma,0,1 HSPBP1 NM_012267 exon2 c.A72C p.S24S GCCCCCTGAAGAG . 7.0 3.0 8.0 0.0 . 24 . . Atlas-SNP ZNF787 126208 hgsc.bcm.edu hg19 19 56599440 56599440 + Missense_Mutation SNP G G C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZNF787 NM_001002836 exon3 c.C1101G p.D367E GGCCTCGTCGTCG . 5.0 5.0 2.0 0.0 . 20 . . Atlas-SNP ZNF582 147948 hgsc.bcm.edu hg19 19 56896375 56896375 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZNF582 NM_144690 exon5 c.A411G p.R137R GAAATGTCTGTCT . 96.0 4.0 112.0 0.0 . 56 . . Atlas-SNP TASP1 55617 hgsc.bcm.edu hg19 20 13539657 13539657 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TASP1 NM_017714 exon8 c.A673G p.K225E TGACCTTCTCACT . 95.0 4.0 100.0 0.0 . 52 . . Atlas-SNP CST5 1473 hgsc.bcm.edu hg19 20 23860147 23860147 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . CST5 NM_001900 exon1 c.A167G p.N56S ACCTTGTTGTACT . 89.0 4.0 96.0 0.0 . 24 . . Atlas-SNP ACSS1 84532 hgsc.bcm.edu hg19 20 25004120 25004120 + Silent SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ACSS1 NM_001252677 exon4 c.G789A p.L263L GACGTCCAGATCC . 66.0 4.0 80.0 0.0 . 46 . . Atlas-SNP NINL 22981 hgsc.bcm.edu hg19 20 25434263 25434263 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NINL NM_025176 exon24 c.A3973G p.K1325E CGGACTTCGTGTT . 95.0 4.0 122.0 0.0 . 148 . . Atlas-SNP RALGAPB 57148 hgsc.bcm.edu hg19 20 37202799 37202799 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RALGAPB NM_020336 exon29 c.A4149G p.T1383T ATCTACAACTCTT . 81.0 4.0 126.0 0.0 . 134 . . Atlas-SNP FAM65C 140876 hgsc.bcm.edu hg19 20 49221180 49221180 + Splice_Site SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . FAM65C NM_080829 exon13 c.1074+2T>C . TCACTCACCAGGT . 58.0 4.0 66.0 0.0 . 87 . . Atlas-SNP HSPA13 6782 hgsc.bcm.edu hg19 21 15748106 15748106 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . HSPA13 NM_006948 exon4 c.A615G p.T205T TGCTGCTGTGGGT . 91.0 4.0 104.0 0.0 . 44 . . Atlas-SNP N6AMT1 29104 hgsc.bcm.edu hg19 21 30248785 30248785 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . N6AMT1 NM_013240 exon6 c.A567G p.K189K CAGACCTTTTGTC . 90.0 4.0 67.0 0.0 . 31 . . Atlas-SNP GRIK1 2897 hgsc.bcm.edu hg19 21 31015285 31015285 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . GRIK1 NM_175611 exon7 c.A959G p.E320G GCCGCTTCAGTCT . 97.0 4.0 91.0 0.0 . 293 . . Atlas-SNP DNAJC28 54943 hgsc.bcm.edu hg19 21 34860754 34860754 + Nonsense_Mutation SNP A A C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 DNAJC28,NS,carcinoma,0,2 DNAJC28 NM_001040192 exon2 c.T947G p.L316X ACAATTAAATTAA . 19.0 4.0 9.0 1.0 . 47 . . Atlas-SNP DNAJC28 54943 hgsc.bcm.edu hg19 21 34860757 34860757 + Missense_Mutation SNP T T A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DNAJC28 NM_001040192 exon2 c.A944T p.N315I ATTAAATTAAAAT . 97.0 9.0 145.0 0.0 . 47 . . Atlas-SNP MYO18B 84700 hgsc.bcm.edu hg19 22 26157091 26157091 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MYO18B NM_032608 exon2 c.A32G p.E11G TGTGGGAGCAGAA . 107.0 5.0 75.0 0.0 . 322 . . Atlas-SNP BAIAP2L2 80115 hgsc.bcm.edu hg19 22 38482394 38482394 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . BAIAP2L2 NM_025045 exon12 c.T1322C p.I441T GGTGCTATGGAGT . 87.0 10.0 88.0 0.0 . 39 . . Atlas-SNP PACSIN2 11252 hgsc.bcm.edu hg19 22 43308052 43308052 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PACSIN2 NM_007229 exon2 c.A35G p.E12G GACACTTCTACTC . 63.0 4.0 54.0 0.0 . 48 . . Atlas-SNP PNPLA5 150379 hgsc.bcm.edu hg19 22 44283472 44283472 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PNPLA5 NM_138814 exon5 c.T762C p.R254R CCTACCACGTCTC . 94.0 4.0 64.0 0.0 . 46 . . Atlas-SNP PKDREJ 10343 hgsc.bcm.edu hg19 22 46654318 46654318 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PKDREJ NM_006071 exon1 c.A4902G p.S1634S GAAGCCTGACAGG . 90.0 4.0 105.0 0.0 . 195 . . Atlas-SNP PPP6R2 9701 hgsc.bcm.edu hg19 22 50854528 50854528 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PPP6R2 NM_001242898 exon6 c.A560G p.N187S GGCTGAATGAAGA . 100.0 27.0 103.0 0.0 . 71 . . Atlas-SNP ODF3B 440836 hgsc.bcm.edu hg19 22 50969184 50969184 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ODF3B NM_001014440 exon6 c.A638G p.D213G GTGTTGTCTTGGG . 86.0 4.0 54.0 0.0 . 6 . . Atlas-SNP PHEX 5251 hgsc.bcm.edu hg19 X 22237189 22237189 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PHEX NM_000444 exon17 c.A1737G p.G579G TGTCGGACATGAA . 72.0 4.0 48.0 0.0 . 95 . . Atlas-SNP PHEX 5251 hgsc.bcm.edu hg19 X 22265970 22265970 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PHEX NM_000444 exon22 c.T2150C p.V717A TCAGGGTCAATGG . 96.0 4.0 67.0 0.0 . 95 . . Atlas-SNP TAB3 257397 hgsc.bcm.edu hg19 X 30864763 30864763 + Splice_Site SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . TAB3 NM_152787 exon9 c.1711-2A>G . TCAGGCTAGTAAG . 72.0 4.0 64.0 0.0 . 82 . . Atlas-SNP RP2 6102 hgsc.bcm.edu hg19 X 46713254 46713254 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . RP2 NM_006915 exon2 c.A446G p.Q149R GTTTTCAATGGTA . 77.0 4.0 57.0 0.0 . 37 . . Atlas-SNP HDAC6 10013 hgsc.bcm.edu hg19 X 48661291 48661291 + Missense_Mutation SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . HDAC6 NM_006044 exon3 c.A107G p.K36R ATATTAAAAAGGG . 85.0 57.0 57.0 0.0 . 111 . . Atlas-SNP HUWE1 10075 hgsc.bcm.edu hg19 X 53591670 53591670 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . HUWE1 NM_031407 exon51 c.A6894G p.E2298E TTCTGCTTCCCCA . 97.0 4.0 70.0 0.0 . 724 . . Atlas-SNP ACRC 93953 hgsc.bcm.edu hg19 X 70823976 70823976 + Silent SNP A A G novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ACRC NM_052957 exon8 c.A849G p.E283E TTCGGAAGCTTCC . 90.0 4.0 39.0 0.0 . 110 . . Atlas-SNP NKAP 79576 hgsc.bcm.edu hg19 X 119059318 119059318 + Missense_Mutation SNP G G T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NKAP NM_024528 exon9 c.C1113A p.N371K GATCTGGTTCTCT . 103.0 81.0 60.0 0.0 . 53 . . Atlas-SNP MCF2 4168 hgsc.bcm.edu hg19 X 138699701 138699701 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MCF2 NM_001171876 exon11 c.A1150G p.T384A TGAAGGTCCTGCT . 105.0 5.0 78.0 0.0 . 432 . . Atlas-SNP SLITRK4 139065 hgsc.bcm.edu hg19 X 142716432 142716432 + Silent SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . SLITRK4 NM_001184750 exon2 c.A2493G p.Q831Q AGCTGTTTGCTCC . 75.0 4.0 67.0 0.0 . 162 . . Atlas-SNP ZNF185 7739 hgsc.bcm.edu hg19 X 152113989 152113989 + Nonsense_Mutation SNP C C T novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ZNF185 NM_001178106 exon17 c.C1483T p.R495X GTCAGACGAGAGA . 93.0 5.0 42.0 0.0 . 92 . . Atlas-SNP UTY 7404 hgsc.bcm.edu hg19 Y 15448106 15448106 + Missense_Mutation SNP T T C novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . UTY NM_001258249 exon18 c.A2171G p.K724R TTCGCCTTCTTAA . 93.0 4.0 113.0 0.0 . 45 . . Atlas-SNP KIFC2 90990 hgsc.bcm.edu hg19 8 145697525 145697526 + Frame_Shift_Del DEL CT CT - novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . KIFC2 NM_145754 exon14 c.1489_1490del p.497_497del . . 120.0 31.0 98.0 0.0 . 53 . . Atlas-Indel,Pindel MLH3 27030 hgsc.bcm.edu hg19 14 75513956 75513957 + Frame_Shift_Del DEL AG AG - novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 AG AG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . MLH3 NM_014381 exon2 c.2403_2404del p.801_802del . . 125.0 20.0 175.0 0.0 . 200 . . Atlas-Indel,Pindel PLEKHN1 84069 hgsc.bcm.edu hg19 1 909846 909855 + Frame_Shift_Del DEL GGGACCCCGG GGGACCCCGG - novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 GGGACCCCGG GGGACCCCGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . PLEKHN1 NM_032129 exon16 c.1726_1735del p.576_579del . . 62.0 16.0 75.0 0.0 . 49 . . Atlas-Indel,Pindel THBS3 7059 hgsc.bcm.edu hg19 1 155167449 155167450 + Frame_Shift_Ins INS - - A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . THBS3 NM_007112 exon20 c.2304_2305insT p.G768fs . . 158.0 17.0 109.0 0.0 . 70 . . Atlas-INDEL DNAH14 127602 hgsc.bcm.edu hg19 1 225273418 225273419 + Frame_Shift_Ins INS - - A novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . DNAH14 NM_001373 exon21 c.3500_3501insA p.I1167fs . . 321.0 53.0 232.0 0.0 . 300 . . Atlas-Indel,Pindel LAMB2 3913 hgsc.bcm.edu hg19 3 49167709 49167711 + In_Frame_Del DEL AGA AGA - novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 AGA AGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . LAMB2 NM_002292 exon9 c.1179_1181del p.393_394del . . 147.0 33.0 151.0 0.0 . 156 . . Atlas-Indel,Pindel NCOR1 9611 hgsc.bcm.edu hg19 17 15971227 15971227 + Frame_Shift_Del DEL A A - novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NCOR1 NM_001190440 exon31 c.4771delC p.H1591fs . . 43.0 18.0 108.0 0.0 . 240 . . Atlas-Indel,Pindel NCAM1 4684 hgsc.bcm.edu hg19 11 112832332 112832363 + Frame_Shift_Del DEL CATCCCTCCCAGCCAGCAGATTACAATGCTGC CATCCCTCCCAGCCAGCAGATTACAATGCTGC - novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 CATCCCTCCCAGCCAGCAGATTACAATGCTGC CATCCCTCCCAGCCAGCAGATTACAATGCTGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . NCAM1 NM_001242607 wholegene . . . . 110.0 33.0 0.0 0.0 . 372 . . Pindel ABLIM1 3983 hgsc.bcm.edu hg19 10 116232776 116232804 + Frame_Shift_Del DEL GAAGTGTAGAAAGGCTCATAGGTAATAAG GAAGTGTAGAAAGGCTCATAGGTAATAAG - novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 GAAGTGTAGAAAGGCTCATAGGTAATAAG GAAGTGTAGAAAGGCTCATAGGTAATAAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ABLIM1 NM_002313 exon10 c.1208_1236del p.403_412del . . 53.0 10.0 0.0 0.0 . 131 . . Pindel HIST1H2AC 8334 hgsc.bcm.edu hg19 6 26124631 26124692 + Frame_Shift_Del DEL GTACCTGACCGCCGAGATCCTGGAGCTGGCCGGCAACGCGGCTCGCGACAACAAGAAGACTC GTACCTGACCGCCGAGATCCTGGAGCTGGCCGGCAACGCGGCTCGCGACAACAAGAAGACTC - novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 GTACCTGACCGCCGAGATCCTGGAGCTGGCCGGCAACGCGGCTCGCGACAACAAGAAGACTC GTACCTGACCGCCGAGATCCTGGAGCTGGCCGGCAACGCGGCTCGCGACAACAAGAAGACTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 HIST1H2AC,NS,carcinoma,0,1 HIST1H2AC NM_003512 exon1 c.170_231del p.57_77del . . 210.0 14.0 0.0 0.0 . 29 . . Pindel ARID1A 8289 hgsc.bcm.edu hg19 1 27102114 27102139 + Frame_Shift_Del DEL CCTGGCAGAGAGCACATGGGCATTAG CCTGGCAGAGAGCACATGGGCATTAG - novel TCGA-G3-A3CG-01A-11D-A20W-10 TCGA-G3-A3CG-10A-01D-A20W-10 CCTGGCAGAGAGCACATGGGCATTAG CCTGGCAGAGAGCACATGGGCATTAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731 d9577f26-985f-433d-becb-50301258d4d6 . ARID1A NM_006015 exon19 c.5039_5064del p.1680_1688del . . 134.0 10.0 0.0 0.0 . 842 . . Pindel