Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm TPRG1L 127262 hgsc.bcm.edu hg19 1 3542011 3542011 + Silent SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TPRG1L NM_182752 exon2 c.G225A p.V75V GGCAGTGGAGGAG . 173.0 73.0 202.0 0.0 . 24 . . Atlas-SNP CHD5 26038 hgsc.bcm.edu hg19 1 6209325 6209325 + Missense_Mutation SNP T T G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . CHD5 NM_015557 exon8 c.A1142C p.K381T CTCCACTTGCCCT . 88.0 43.0 73.0 0.0 . 267 . . Atlas-SNP UBE4B 10277 hgsc.bcm.edu hg19 1 10195205 10195205 + Missense_Mutation SNP G G C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . UBE4B NM_001105562 exon16 c.G2185C p.A729P GTGAATGCAACGA . 126.0 56.0 120.0 0.0 . 233 . . Atlas-SNP EPHA8 2046 hgsc.bcm.edu hg19 1 22902776 22902776 + Missense_Mutation SNP A A C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . EPHA8 NM_020526 exon3 c.A226C p.M76L AACGTCATGAGCC . 275.0 109.0 262.0 0.0 . 221 . . Atlas-SNP HMGCL 3155 hgsc.bcm.edu hg19 1 24147006 24147006 + Missense_Mutation SNP A A C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . HMGCL NM_000191 exon2 c.T138G p.N46K CTTTTCATTTTGT . 122.0 50.0 161.0 0.0 . 22 . . Atlas-SNP HMGCL 3155 hgsc.bcm.edu hg19 1 24147010 24147010 + Missense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . HMGCL NM_000191 exon2 c.A134T p.Q45L TCATTTTGTAGTC . 123.0 12.0 159.0 0.0 . 22 . . Atlas-SNP RNF19B 127544 hgsc.bcm.edu hg19 1 33430200 33430200 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RNF19B NM_001127361 exon1 c.G87A p.R29R CCGGCGCCGGCCG . 41.0 21.0 27.0 0.0 . 43 . . Atlas-SNP GJB5 2709 hgsc.bcm.edu hg19 1 35223441 35223441 + Silent SNP C C G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . GJB5 NM_005268 exon2 c.C510G p.P170P ATGTCCCAATATA . 58.0 22.0 86.0 0.0 . 35 . . Atlas-SNP HIVEP3 59269 hgsc.bcm.edu hg19 1 41976245 41976245 + Silent SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . HIVEP3 NM_024503 exon9 c.A7098T p.P2366P CCGGGCTGGGAAG . 79.0 23.0 119.0 0.0 . 235 . . Atlas-SNP MAST2 23139 hgsc.bcm.edu hg19 1 46269721 46269721 + Missense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . MAST2 NM_015112 exon1 c.G154A p.A52T GGCCCCGCGGGGC . 222.0 78.0 166.0 0.0 . 136 . . Atlas-SNP ZFYVE9 9372 hgsc.bcm.edu hg19 1 52705044 52705044 + Missense_Mutation SNP A A T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ZFYVE9 NM_007323 exon4 c.A1955T p.Y652F AAAGTTATGAGGC . 175.0 67.0 141.0 0.0 . 131 . . Atlas-SNP GLIS1 148979 hgsc.bcm.edu hg19 1 53995579 53995579 + Missense_Mutation SNP A A C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . GLIS1 NM_147193 exon4 c.T842G p.I281S AGGTGGATCTTGA . 49.0 20.0 63.0 0.0 . 52 . . Atlas-SNP SLC35D1 23169 hgsc.bcm.edu hg19 1 67518480 67518480 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . SLC35D1 NM_015139 exon3 c.G298A p.D100N CAAGGTCAGGAAA . 144.0 58.0 129.0 0.0 . 22 . . Atlas-SNP ACADM 34 hgsc.bcm.edu hg19 1 76216231 76216231 + Missense_Mutation SNP G G C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ACADM NM_001127328 exon10 c.G957C p.E319D TGTAGAGGTAATT . 131.0 14.0 94.0 0.0 . 50 . . Atlas-SNP ADAM30 11085 hgsc.bcm.edu hg19 1 120436684 120436684 + Missense_Mutation SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ADAM30 NM_021794 exon1 c.A2276G p.Q759R TCTTCCTGTCCAG . 162.0 72.0 171.0 0.0 . 88 . . Atlas-SNP PGLYRP4 57115 hgsc.bcm.edu hg19 1 153315636 153315636 + Missense_Mutation SNP A A T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PGLYRP4 NM_020393 exon5 c.T402A p.N134K TTGGATATTCCAG . 250.0 69.0 183.0 0.0 . 45 . . Atlas-SNP ASH1L 55870 hgsc.bcm.edu hg19 1 155451459 155451459 + Missense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ASH1L NM_018489 exon3 c.A1202T p.N401I TCCTTATTAACCA . 104.0 31.0 70.0 0.0 . 279 . . Atlas-SNP METTL18 92342 hgsc.bcm.edu hg19 1 169762137 169762137 + Missense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . METTL18 NM_033418 exon2 c.A700T p.N234Y TGGAGTTAGCTAC . 279.0 85.0 160.0 0.0 . 23 . . Atlas-SNP PRRC2C 23215 hgsc.bcm.edu hg19 1 171511016 171511016 + Missense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . . NM_015172 exon16 c.G4405A p.V1469I GAACCAGTTAATA . 247.0 79.0 190.0 0.0 . . . . Atlas-SNP RASAL2 9462 hgsc.bcm.edu hg19 1 178408712 178408712 + Splice_Site SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RASAL2 NM_170692 exon6 c.828+2T>C . TTGAGGTAAAAAT . 154.0 39.0 85.0 0.0 . 334 . . Atlas-SNP ABL2 27 hgsc.bcm.edu hg19 1 179112161 179112161 + Missense_Mutation SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ABL2 NM_001136000 exon1 c.C19A p.L7I GAAGGAGAACTGT . 170.0 44.0 126.0 0.0 . 307 . . Atlas-SNP CAMSAP2 23271 hgsc.bcm.edu hg19 1 200819254 200819254 + Silent SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . . NM_203459 exon11 c.T3357C p.D1119D CTCAGATTTGAAA . 300.0 163.0 211.0 0.0 . . . . Atlas-SNP PTPN7 5778 hgsc.bcm.edu hg19 1 202119444 202119444 + Silent SNP T T G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PTPN7 NM_002832 exon9 c.A1299C p.L433L CCTGTCTAGCCGC . 105.0 30.0 114.0 0.0 . 31 . . Atlas-SNP LGR6 59352 hgsc.bcm.edu hg19 1 202163198 202163198 + Missense_Mutation SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . LGR6 NM_001017403 exon1 c.G81T p.Q27H CCCCCAGCCCGGC . 28.0 9.0 15.0 0.0 . 102 . . Atlas-SNP SYT14 255928 hgsc.bcm.edu hg19 1 210334239 210334239 + Missense_Mutation SNP A A G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . SYT14 NM_001146261 exon10 c.A1712G p.N571S TGTATAACAAACG . 181.0 49.0 159.0 0.0 . 89 . . Atlas-SNP SPATA17 128153 hgsc.bcm.edu hg19 1 217822303 217822303 + Missense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . SPATA17 NM_138796 exon2 c.G148A p.A50T GTTCGGGCATATA . 168.0 93.0 90.0 0.0 . 59 . . Atlas-SNP AHCTF1 25909 hgsc.bcm.edu hg19 1 247027263 247027263 + Nonsense_Mutation SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . AHCTF1 NM_015446 exon27 c.C3530A p.S1177X AATTCTGAAGCCC . 318.0 28.0 198.0 0.0 . 187 . . Atlas-SNP OR2G2 81470 hgsc.bcm.edu hg19 1 247751681 247751681 + Missense_Mutation SNP C C A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . OR2G2 NM_001001915 exon1 c.C20A p.T7N GACATACCAATGA . 171.0 51.0 113.0 0.0 . 88 . . Atlas-SNP OR2T3 343173 hgsc.bcm.edu hg19 1 248637531 248637531 + Missense_Mutation SNP A A T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . OR2T3 NM_001005495 exon1 c.A880T p.I294F CCCCTCATTTACA . 1255.0 159.0 912.0 0.0 . 79 . . Atlas-SNP RSAD2 91543 hgsc.bcm.edu hg19 2 7017965 7017965 + Nonsense_Mutation SNP A A T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RSAD2 NM_080657 exon1 c.A34T p.K12X GCTGGGAAGCTCT . 131.0 40.0 72.0 0.0 . 38 . . Atlas-SNP PDIA6 10130 hgsc.bcm.edu hg19 2 10937247 10937247 + Missense_Mutation SNP C C A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PDIA6 NM_005742 exon4 c.G306T p.K102N AAAAATCTTAATG . 163.0 46.0 119.0 0.0 . 31 . . Atlas-SNP UBXN2A 165324 hgsc.bcm.edu hg19 2 24199886 24199886 + Missense_Mutation SNP C C G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . UBXN2A NM_181713 exon4 c.C228G p.D76E CAACGACGATTTC . 110.0 22.0 48.0 0.0 . 20 . . Atlas-SNP NCOA1 8648 hgsc.bcm.edu hg19 2 24929659 24929659 + Silent SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . NCOA1 NM_147223 exon11 c.T1320C p.S440S AGGAAGTTTCGGA . 180.0 47.0 148.0 0.0 . 210 . . Atlas-SNP SNX17 9784 hgsc.bcm.edu hg19 2 27598432 27598432 + Silent SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . SNX17 NM_014748 exon10 c.G834A p.V278V CTGTGTGGCTGAC . 111.0 26.0 68.0 0.0 . 40 . . Atlas-SNP LTBP1 4052 hgsc.bcm.edu hg19 2 33498742 33498742 + Silent SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . LTBP1 NM_206943 exon16 c.G2637A p.V879V TACTGTGAACCCT . 105.0 36.0 106.0 0.0 . 317 . . Atlas-SNP VPS54 51542 hgsc.bcm.edu hg19 2 64126619 64126619 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce VPS54,colon,carcinoma,0,1 VPS54 NM_016516 exon21 c.G2722A p.E908K TTTGTTCTTCTGG . 66.0 25.0 58.0 0.0 . 57 . . Atlas-SNP IMMT 10989 hgsc.bcm.edu hg19 2 86385747 86385747 + Missense_Mutation SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . IMMT NM_006839 exon10 c.C1130A p.T377N TCTGGAGTAATAC . 123.0 46.0 125.0 0.0 . 65 . . Atlas-SNP POTEE 445582 hgsc.bcm.edu hg19 2 131984418 131984418 + Missense_Mutation SNP T T G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . . NM_001083538 exon4 c.T833G p.L278R TGTTACTTGGTGT . 384.0 112.0 321.0 0.0 . . . . Atlas-SNP FMNL2 114793 hgsc.bcm.edu hg19 2 153192209 153192209 + Missense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . FMNL2 NM_052905 exon1 c.T92A p.L31Q GTGAACTGGAGGA . 333.0 153.0 299.0 0.0 . 75 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168100314 168100314 + Silent SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . XIRP2 NM_152381 exon9 c.G2412T p.G804G AGGTGGGGTGAGT . 409.0 187.0 403.0 0.0 . 914 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168100315 168100315 + Missense_Mutation SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . XIRP2 NM_152381 exon9 c.G2413T p.V805L GGTGGGGTGAGTA . 405.0 186.0 400.0 1.0 . 914 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179638708 179638708 + Missense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TTN NM_001267550 exon31 c.A7187T p.Q2396L CTGGGCTGCACTT . 112.0 45.0 103.0 0.0 . 18412 . . Atlas-SNP FN1 2335 hgsc.bcm.edu hg19 2 216243896 216243896 + Missense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . FN1 NM_212482 exon34 c.A5579T p.N1860I GCAAGGTTGATTT . 195.0 30.0 159.0 0.0 . 521 . . Atlas-SNP HRH1 3269 hgsc.bcm.edu hg19 3 11300884 11300884 + Missense_Mutation SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . HRH1 NM_000861 exon3 c.G161T p.S54I TACGGAGTGAGCG . 149.0 66.0 136.0 0.0 . 58 . . Atlas-SNP NKTR 4820 hgsc.bcm.edu hg19 3 42678871 42678871 + Missense_Mutation SNP C C A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . NKTR NM_005385 exon13 c.C1675A p.H559N TCTGGGCACCGAA . 319.0 143.0 264.0 0.0 . 116 . . Atlas-SNP LAMB2 3913 hgsc.bcm.edu hg19 3 49166162 49166162 + Silent SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . LAMB2 NM_002292 exon14 c.C1822T p.L608L ACTCCAGGGTCTG . 96.0 46.0 74.0 0.0 . 156 . . Atlas-SNP BSN 8927 hgsc.bcm.edu hg19 3 49694957 49694957 + Silent SNP C C A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce BSN,NS,carcinoma,0,1 BSN NM_003458 exon5 c.C7968A p.A2656A TGCTGCCACTGTG . 157.0 63.0 141.0 0.0 . 272 . . Atlas-SNP TRMT10C 54931 hgsc.bcm.edu hg19 3 101284684 101284684 + Silent SNP A A G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . . NM_017819 exon2 c.A1059G p.L353L CACCTTAGATCAA . 133.0 54.0 119.0 0.0 . . . . Atlas-SNP GOLGB1 2804 hgsc.bcm.edu hg19 3 121409566 121409566 + Missense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . GOLGB1 NM_001256486 exon14 c.A8645T p.Q2882L AAACTCTGTACTT . 63.0 23.0 65.0 0.0 . 319 . . Atlas-SNP UROC1 131669 hgsc.bcm.edu hg19 3 126236538 126236538 + Missense_Mutation SNP A A C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . UROC1 NM_001165974 exon1 c.T25G p.S9A GGCCAGAGCACAG . 214.0 104.0 208.0 0.0 . 150 . . Atlas-SNP PODXL2 50512 hgsc.bcm.edu hg19 3 127391218 127391218 + Silent SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PODXL2 NM_015720 exon8 c.G1713T p.L571L CAGCCTGAACGGC . 84.0 32.0 90.0 0.0 . 53 . . Atlas-SNP PPP2R3A 5523 hgsc.bcm.edu hg19 3 135721279 135721279 + Silent SNP T T C rs35214119 bycluster;byfrequency;alternate_allele TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PPP2R3A NM_002718 exon2 c.T939C p.N313N CAGTAATATGCCT . 154.0 60.0 117.0 0.0 . 114 . T|1.000;G|0.000 Atlas-SNP TBL1XR1 79718 hgsc.bcm.edu hg19 3 176750884 176750884 + Nonsense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TBL1XR1 NM_024665 exon14 c.C1291T p.R431X TCCCTCGGTCTAC . 294.0 117.0 283.0 0.0 . 87 . . Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178952085 178952085 + Missense_Mutation SNP A A T rs121913279 bycluster TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce PIK3CA_ENST00000263967,NS,adenocarcinoma,0,2044 PIK3CA NM_006218 exon21 c.A3140T p.H1047L ATGCACATCATGG . 178.0 77.0 182.0 0.0 . 8460 . . Atlas-SNP HRG 3273 hgsc.bcm.edu hg19 3 186395095 186395095 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . HRG NM_000412 exon7 c.C1001T p.T334I TTGGCACAAATGG . 164.0 76.0 160.0 0.0 . 81 . . Atlas-SNP LCORL 254251 hgsc.bcm.edu hg19 4 17885695 17885695 + Missense_Mutation SNP G G C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . LCORL NM_001166139 exon7 c.C1457G p.P486R CACAAAGGAGAGA . 240.0 99.0 202.0 0.0 . 60 . . Atlas-SNP GABRA2 2555 hgsc.bcm.edu hg19 4 46305505 46305505 + Missense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . GABRA2 NM_000807 exon8 c.A828T p.R276S AGATTCTCTGTTA . 315.0 144.0 273.0 1.0 . 134 . . Atlas-SNP KIAA1211 57482 hgsc.bcm.edu hg19 4 57181349 57181349 + Missense_Mutation SNP G G A rs370638037 TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . KIAA1211 NM_020722 exon8 c.G1681A p.A561T ACGCCCGCAAAGG . 155.0 59.0 144.0 0.0 . 178 . . Atlas-SNP ALB 213 hgsc.bcm.edu hg19 4 74285253 74285253 + Missense_Mutation SNP C C G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ALB NM_000477 exon13 c.C1682G p.P561R ACAAGCCCAAGGC . 104.0 34.0 116.0 0.0 . 132 . . Atlas-SNP CDS1 1040 hgsc.bcm.edu hg19 4 85569727 85569727 + Missense_Mutation SNP A A C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . CDS1 NM_001263 exon13 c.A1274C p.K425T CCAGCAAAGTGCT . 147.0 107.0 277.0 0.0 . 58 . . Atlas-SNP C4orf21 55345 hgsc.bcm.edu hg19 4 113538660 113538660 + Missense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . C4orf21 NM_018392 exon6 c.A2538T p.K846N TTTCTTTTTCAAT . 254.0 108.0 213.0 0.0 . 223 . . Atlas-SNP SPATA5 166378 hgsc.bcm.edu hg19 4 123868516 123868516 + Silent SNP G G A rs140187138 alternate_allele TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . SPATA5 NM_145207 exon9 c.G1587A p.R529R GGACCGGCTAGAT . 107.0 40.0 101.0 0.0 . 62 . G|1.000;T|0.000 Atlas-SNP PHF17 79960 hgsc.bcm.edu hg19 4 129782877 129782877 + Missense_Mutation SNP C C T rs369651997 TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PHF17 NM_199320 exon9 c.C1000T p.R334C AACTGCCGCACAG . 138.0 59.0 115.0 0.0 . 63 . . Atlas-SNP TBC1D9 23158 hgsc.bcm.edu hg19 4 141600769 141600769 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TBC1D9 NM_015130 exon4 c.G589A p.A197T ACTTACCTTCCCT . 168.0 69.0 127.0 0.0 . 198 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155163890 155163890 + Missense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . DCHS2 NM_017639 exon22 c.A5611T p.R1871W AAAGCCTGGGCAT . 58.0 30.0 65.0 0.0 . 594 . . Atlas-SNP TRIML1 339976 hgsc.bcm.edu hg19 4 189068011 189068011 + Missense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TRIML1 NM_178556 exon6 c.T892A p.Y298N AATGCCTATCTCG . 182.0 69.0 168.0 0.0 . 126 . . Atlas-SNP TRIO 7204 hgsc.bcm.edu hg19 5 14394211 14394211 + Missense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TRIO NM_007118 exon28 c.G4283A p.R1428Q TTCAGCGAATAAC . 188.0 73.0 160.0 0.0 . 305 . . Atlas-SNP ITGA2 3673 hgsc.bcm.edu hg19 5 52376395 52376395 + Nonsense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ITGA2 NM_002203 exon25 c.C2983T p.Q995X ATCCCTCAGTATA . 136.0 55.0 159.0 0.0 . 211 . . Atlas-SNP FST 10468 hgsc.bcm.edu hg19 5 52776658 52776658 + Missense_Mutation SNP C C G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . FST NM_013409 exon1 c.C37G p.L13V CTTTGCCTCCTGC . 83.0 40.0 65.0 0.0 . 42 . . Atlas-SNP BHMT2 23743 hgsc.bcm.edu hg19 5 78379661 78379661 + Missense_Mutation SNP A A C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . BHMT2 NM_017614 exon7 c.A992C p.K331T ACACCAAACCCTG . 308.0 109.0 293.0 0.0 . 44 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 90079735 90079735 + Missense_Mutation SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . GPR98 NM_032119 exon67 c.T13514C p.I4505T GCAGAATCATAAT . 127.0 53.0 117.0 0.0 . 605 . . Atlas-SNP VDAC1 7416 hgsc.bcm.edu hg19 5 133326695 133326695 + Nonsense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . VDAC1 NM_003374 exon4 c.C268T p.Q90X TTACCTGATCTTC . 96.0 41.0 100.0 0.0 . 17 . . Atlas-SNP TGFBI 7045 hgsc.bcm.edu hg19 5 135389646 135389646 + Missense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TGFBI NM_000358 exon9 c.G1141A p.E381K CTATTTGAATTGG . 98.0 35.0 80.0 0.0 . 76 . . Atlas-SNP KDM3B 51780 hgsc.bcm.edu hg19 5 137708413 137708413 + Silent SNP A A G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . KDM3B NM_016604 exon2 c.A243G p.K81K GGTAAAAGTTCAT . 135.0 61.0 128.0 0.0 . 177 . . Atlas-SNP LCP2 3937 hgsc.bcm.edu hg19 5 169693828 169693828 + Missense_Mutation SNP T T G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . LCP2 NM_005565 exon10 c.A756C p.R252S GGGTTCTCTATCA . 177.0 65.0 153.0 0.0 . 133 . . Atlas-SNP HNRNPH1 3187 hgsc.bcm.edu hg19 5 179046347 179046347 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . HNRNPH1 NM_001257293 exon5 c.G459A p.G153G GGCCTCCCCCGTA . 196.0 80.0 154.0 0.0 . 62 . . Atlas-SNP NEDD9 4739 hgsc.bcm.edu hg19 6 11213881 11213881 + Missense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . NEDD9 NM_182966 exon2 c.C92T p.T31I ATGACGGTCAGGA . 100.0 41.0 102.0 0.0 . 191 . . Atlas-SNP OR2J3 442186 hgsc.bcm.edu hg19 6 29079911 29079911 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . OR2J3 NM_001005216 exon1 c.C244T p.P82S TCTATCCCTCAGT . 148.0 66.0 132.0 0.0 . 53 . . Atlas-SNP MUC21 394263 hgsc.bcm.edu hg19 6 30955326 30955326 + Silent SNP T T G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce MUC21,NS,malignant_melanoma,0,2 MUC21 NM_001010909 exon2 c.T1374G p.T458T CACAACTTCCCAT . 149.0 65.0 136.0 0.0 . 98 . . Atlas-SNP HLA-C 3107 hgsc.bcm.edu hg19 6 31238146 31238146 + Missense_Mutation SNP C C T rs281860561 TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . HLA-C NM_002117 exon4 c.G736A p.E246K GGTCCTCCCCATC . 87.0 35.0 84.0 0.0 . 92 . . Atlas-SNP C2 717 hgsc.bcm.edu hg19 6 31903820 31903820 + Missense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . C2 NM_000063 exon7 c.G970A p.E324K AGCCTGGAAAATG . 117.0 38.0 103.0 0.0 . 50 . . Atlas-SNP SKIV2L 6499 hgsc.bcm.edu hg19 6 31933608 31933608 + Missense_Mutation SNP C C G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . SKIV2L NM_006929 exon18 c.C2020G p.R674G CCTGCTCGTACAG . 161.0 48.0 157.0 0.0 . 97 . . Atlas-SNP RGL2 5863 hgsc.bcm.edu hg19 6 33264534 33264534 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RGL2 NM_004761 exon4 c.G260A p.R87H GAGGAACGTGGGG . 170.0 63.0 153.0 0.0 . 58 . . Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38758095 38758095 + Missense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . DNAH8 NM_001206927 exon20 c.G2695A p.V899M CTCACAGTGTTAA . 155.0 63.0 132.0 0.0 . 1239 . . Atlas-SNP MCM3 4172 hgsc.bcm.edu hg19 6 52132768 52132768 + Splice_Site SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . MCM3 NM_001270472 exon14 c.1999-2A>T . AGAACCTAAGACC . 111.0 43.0 91.0 0.0 . 63 . . Atlas-SNP RIMS1 22999 hgsc.bcm.edu hg19 6 73017046 73017046 + Silent SNP A A G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RIMS1 NM_014989 exon27 c.A3936G p.Q1312Q TAGTCAAGAACTT . 114.0 43.0 106.0 0.0 . 278 . . Atlas-SNP METTL24 728464 hgsc.bcm.edu hg19 6 110620219 110620219 + Missense_Mutation SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . . NM_001123364 exon4 c.A692G p.D231G CGCCAGTCAATGG . 50.0 20.0 51.0 0.0 . . . . Atlas-SNP C6orf170 221322 hgsc.bcm.edu hg19 6 121624863 121624863 + Missense_Mutation SNP A A C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . C6orf170 NM_152730 exon9 c.T980G p.V327G TGTTTAACTGTTA . 179.0 11.0 168.0 0.0 . 146 . . Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152671436 152671436 + Missense_Mutation SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce SYNE1_ENST00000265368,NS,carcinoma,0,2 SYNE1 NM_182961 exon72 c.A11768G p.D3923G TCATGGTCTTTGA . 54.0 21.0 61.0 0.0 . 3227 . . Atlas-SNP GPR146 115330 hgsc.bcm.edu hg19 7 1097405 1097405 + Missense_Mutation SNP T T G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . GPR146 NM_138445 exon1 c.T254G p.L85R ACCTGCTCGGCCC . 83.0 27.0 56.0 0.0 . 20 . . Atlas-SNP SFRP4 6424 hgsc.bcm.edu hg19 7 37955894 37955894 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . SFRP4 NM_003014 exon1 c.G246A p.A82A AATGGGCGCGTAC . 95.0 37.0 96.0 0.0 . 66 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82545938 82545938 + Missense_Mutation SNP A A T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PCLO NM_014510 exon7 c.T11364A p.D3788E TTCTTCATCAAGC . 106.0 40.0 114.0 0.0 . 1506 . . Atlas-SNP ABCB4 5244 hgsc.bcm.edu hg19 7 87047881 87047881 + Missense_Mutation SNP A A T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ABCB4 NM_018850 exon20 c.T2450A p.L817H GTGGCAAGTCTTG . 103.0 41.0 81.0 0.0 . 177 . . Atlas-SNP RELN 5649 hgsc.bcm.edu hg19 7 103185629 103185629 + Silent SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RELN NM_173054 exon42 c.A6465G p.S2155S TGGACCTGAGTAG . 198.0 9.0 155.0 0.0 . 593 . . Atlas-SNP KCND2 3751 hgsc.bcm.edu hg19 7 120381672 120381672 + Missense_Mutation SNP A A G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . KCND2 NM_012281 exon3 c.A1363G p.N455D CTCAGTAATCAGC . 333.0 137.0 271.0 0.0 . 194 . . Atlas-SNP SND1 27044 hgsc.bcm.edu hg19 7 127729698 127729698 + Missense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . SND1 NM_014390 exon22 c.G2576A p.G859E AGGAAGGGCTGGT . 146.0 73.0 116.0 0.0 . 104 . . Atlas-SNP NOM1 64434 hgsc.bcm.edu hg19 7 156743034 156743034 + Silent SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . NOM1 NM_138400 exon1 c.G603A p.K201K AAAGAAGGACGGC . 128.0 60.0 144.0 0.0 . 73 . . Atlas-SNP LOXL2 4017 hgsc.bcm.edu hg19 8 23217767 23217767 + Missense_Mutation SNP A A C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . LOXL2 NM_002318 exon3 c.T367G p.L123V TGTCTAACCAGAT . 31.0 14.0 86.0 0.0 . 97 . . Atlas-SNP PLAT 5327 hgsc.bcm.edu hg19 8 42037780 42037780 + Missense_Mutation SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PLAT NM_000930 exon11 c.A1202G p.D401G TAAGTGTCATCAT . 95.0 41.0 81.0 0.0 . 62 . . Atlas-SNP TRPA1 8989 hgsc.bcm.edu hg19 8 72958795 72958795 + Missense_Mutation SNP T T G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TRPA1 NM_007332 exon17 c.A2014C p.K672Q GTGTTTTTTTGGT . 61.0 30.0 62.0 0.0 . 256 . . Atlas-SNP KCNQ3 3786 hgsc.bcm.edu hg19 8 133492604 133492604 + Missense_Mutation SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . KCNQ3 NM_004519 exon1 c.C176A p.A59D GCTCCGGCCCCGA . 353.0 131.0 326.0 1.0 . 164 . . Atlas-SNP RECQL4 9401 hgsc.bcm.edu hg19 8 145737311 145737311 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RECQL4 NM_004260 exon20 c.G3376A p.E1126K CTGGCTCGGGGCC . 87.0 11.0 55.0 0.0 . 75 . . Atlas-SNP CDKN2A 1029 hgsc.bcm.edu hg19 9 21971036 21971036 + Missense_Mutation SNP C C A rs121913381 TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce CDKN2A_ENST00000498124,bladder,carcinoma,0,3 CDKN2A NM_058195 exon2 c.G365T p.R122L AGGCATCGCGCAC . 133.0 54.0 120.0 0.0 . 4810 . . Atlas-SNP AQP3 360 hgsc.bcm.edu hg19 9 33442436 33442436 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . AQP3 NM_004925 exon5 c.G573A p.E191E GAAGGCCTCCAGG . 197.0 70.0 226.0 0.0 . 18 . . Atlas-SNP SLC46A2 57864 hgsc.bcm.edu hg19 9 115652684 115652684 + Missense_Mutation SNP G G C rs376774946 alternate_allele TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . SLC46A2 NM_033051 exon1 c.C278G p.A93G CCGTAGGCGGACA . 151.0 62.0 132.0 0.0 . 30 . . Atlas-SNP EHMT1 79813 hgsc.bcm.edu hg19 9 140671290 140671290 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . EHMT1 NM_001145527 exon12 c.C2012T p.T671M CCACAACGGGCAG . 118.0 9.0 127.0 0.0 . 196 . . Atlas-SNP EXOC6 54536 hgsc.bcm.edu hg19 10 94669328 94669328 + Missense_Mutation SNP A A C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . EXOC6 NM_019053 exon6 c.A603C p.K201N TCTCAAAGACTTT . 237.0 91.0 235.0 0.0 . 147 . . Atlas-SNP CYP2C9 1559 hgsc.bcm.edu hg19 10 96745877 96745877 + Missense_Mutation SNP C C A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . CYP2C9 NM_000771 exon8 c.C1237A p.L413M CACTTTCTGGATG . 138.0 50.0 121.0 0.0 . 82 . . Atlas-SNP COX15 1355 hgsc.bcm.edu hg19 10 101476153 101476153 + Silent SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . COX15 NM_078470 exon8 c.A1053G p.R351R GGTCCTTCTAGGA . 86.0 29.0 90.0 0.0 . 25 . . Atlas-SNP ADRA2A 150 hgsc.bcm.edu hg19 10 112838915 112838915 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ADRA2A NM_000681 exon1 c.C1161T p.F387F GCGCTTCACGTTC . 38.0 12.0 48.0 0.0 . 38 . . Atlas-SNP KIAA1549L 25758 hgsc.bcm.edu hg19 11 33565296 33565296 + Silent SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . . NM_012194 exon1 c.T1296A p.I432I CACAATTAGCACC . 81.0 28.0 88.0 0.0 . . . . Atlas-SNP AMBRA1 55626 hgsc.bcm.edu hg19 11 46567302 46567302 + Missense_Mutation SNP C C A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . AMBRA1 NM_001267783 exon5 c.G403T p.D135Y TGCTATCTGTGAA . 133.0 54.0 105.0 0.0 . 201 . . Atlas-SNP OR5L1 219437 hgsc.bcm.edu hg19 11 55579061 55579061 + Nonsense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . OR5L1 NM_001004738 exon1 c.T119A p.L40X CGTTGTTAGCCAA . 95.0 36.0 100.0 0.0 . 145 . . Atlas-SNP VEGFB 7423 hgsc.bcm.edu hg19 11 64005084 64005084 + Missense_Mutation SNP C C G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . VEGFB NM_001243733 exon6 c.C502G p.R168G TTCCTCCGTTGCC . 59.0 18.0 37.0 0.0 . 18 . . Atlas-SNP RPS6KB2 6199 hgsc.bcm.edu hg19 11 67200122 67200122 + Missense_Mutation SNP C C A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RPS6KB2 NM_003952 exon6 c.C509A p.T170K AAGATACGGCCTG . 135.0 46.0 91.0 0.0 . 92 . . Atlas-SNP MYO7A 4647 hgsc.bcm.edu hg19 11 76890167 76890167 + Missense_Mutation SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . MYO7A NM_001127179 exon20 c.T2359C p.Y787H AAGAACTACGGGC . 97.0 53.0 79.0 0.0 . 164 . . Atlas-SNP INTS4 92105 hgsc.bcm.edu hg19 11 77669833 77669833 + Silent SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . INTS4 NM_033547 exon7 c.A756T p.A252A CTGGACTGCAGCA . 702.0 402.0 436.0 0.0 . 89 . . Atlas-SNP FAM181B 220382 hgsc.bcm.edu hg19 11 82443621 82443621 + Missense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . FAM181B NM_175885 exon1 c.C1151T p.P384L GGCGGCGGGGGCA . 197.0 14.0 144.0 0.0 . 14 . . Atlas-SNP PCF11 51585 hgsc.bcm.edu hg19 11 82877710 82877710 + Missense_Mutation SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PCF11 NM_015885 exon5 c.T1771C p.S591P CAAAGTTCCAAGT . 457.0 143.0 375.0 0.0 . 220 . . Atlas-SNP RBM7 10179 hgsc.bcm.edu hg19 11 114271428 114271428 + Missense_Mutation SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RBM7 NM_016090 exon1 c.T35C p.L12P GCACTCTCTTTGT . 75.0 10.0 163.0 0.0 . 33 . . Atlas-SNP CD163L1 283316 hgsc.bcm.edu hg19 12 7551140 7551140 + Missense_Mutation SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . CD163L1 NM_174941 exon7 c.C1449A p.S483R ACAGGGGCTATGA . 149.0 53.0 104.0 0.0 . 238 . . Atlas-SNP LRRK2 120892 hgsc.bcm.edu hg19 12 40668428 40668428 + Missense_Mutation SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . LRRK2 NM_198578 exon15 c.T1700C p.I567T AAGTAATTTCTTC . 80.0 27.0 83.0 0.0 . 763 . . Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49431855 49431855 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . MLL2 NM_003482 exon34 c.G9284A p.G3095D TCAGGGCCCAAGG . 81.0 33.0 94.0 0.0 . 1173 . . Atlas-SNP KRT85 3891 hgsc.bcm.edu hg19 12 52757067 52757067 + Missense_Mutation SNP C C A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . KRT85 NM_002283 exon5 c.G914T p.R305L CGGCTGCGGCTGG . 85.0 7.0 79.0 0.0 . 78 . . Atlas-SNP TIMELESS 8914 hgsc.bcm.edu hg19 12 56817448 56817448 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce TIMELESS,NS,carcinoma,0,1 TIMELESS NM_003920 exon17 c.G2010A p.E670E CTCCTCCTCTTCT . 63.0 4.0 52.0 0.0 . 107 . . Atlas-SNP PRIM1 5557 hgsc.bcm.edu hg19 12 57136845 57136845 + Missense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PRIM1 NM_000946 exon7 c.A674T p.E225V GCATATTCTTCAA . 62.0 26.0 60.0 0.0 . 22 . . Atlas-SNP PAH 5053 hgsc.bcm.edu hg19 12 103310862 103310862 + Missense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PAH NM_000277 exon1 c.C47T p.S16F AAGTCAGAGAGTT . 87.0 32.0 88.0 0.0 . 77 . . Atlas-SNP ATP6V0A2 23545 hgsc.bcm.edu hg19 12 124242532 124242532 + Missense_Mutation SNP T T G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ATP6V0A2 NM_012463 exon20 c.T2524G p.F842V TTCTCATTCAGTC . 71.0 19.0 64.0 0.0 . 68 . . Atlas-SNP ATP12A 479 hgsc.bcm.edu hg19 13 25265114 25265114 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ATP12A NM_001185085 exon8 c.C812T p.P271L CTTCCCCTGTAGG . 76.0 29.0 91.0 0.0 . 172 . . Atlas-SNP TM9SF2 9375 hgsc.bcm.edu hg19 13 100206556 100206556 + Splice_Site SNP A A T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TM9SF2 NM_004800 exon14 c.1489-2A>T . TACTGAAGGCCAT . 76.0 25.0 70.0 0.0 . 52 . . Atlas-SNP IRS2 8660 hgsc.bcm.edu hg19 13 110434682 110434682 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . IRS2 NM_003749 exon1 c.G3719A p.R1240H TCTCTGCGCATGG . 136.0 55.0 137.0 0.0 . 44 . . Atlas-SNP MCF2L 23263 hgsc.bcm.edu hg19 13 113750772 113750772 + Missense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . MCF2L NM_001112732 exon28 c.G3163A p.V1055M GAGCTGGTGCAGG . 189.0 91.0 194.0 0.0 . 182 . . Atlas-SNP OR4Q3 441669 hgsc.bcm.edu hg19 14 20216431 20216431 + Missense_Mutation SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . OR4Q3 NM_172194 exon1 c.T845C p.M282T CACCTATGTTGAA . 101.0 18.0 117.0 0.0 . 117 . . Atlas-SNP MGA 23269 hgsc.bcm.edu hg19 15 41988768 41988768 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . MGA NM_001080541 exon3 c.C1560T p.F520F TGCCTTCTGCTTA . 166.0 62.0 135.0 0.0 . 264 . . Atlas-SNP LRRC57 255252 hgsc.bcm.edu hg19 15 42839593 42839593 + Missense_Mutation SNP G G C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . LRRC57 NM_153260 exon4 c.C358G p.L120V CTCCCAGTTGGTT . 131.0 53.0 122.0 0.0 . 20 . . Atlas-SNP PRTG 283659 hgsc.bcm.edu hg19 15 55972370 55972370 + Silent SNP T T G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PRTG NM_173814 exon6 c.A855C p.G285G ACCATTTCCAAGT . 213.0 87.0 202.0 0.0 . 110 . . Atlas-SNP IGDCC4 57722 hgsc.bcm.edu hg19 15 65693281 65693281 + Missense_Mutation SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce IGDCC4,NS,lymphoid_neoplasm,0,2 IGDCC4 NM_020962 exon5 c.C704T p.S235F GCCAGGGACCCTG . 88.0 9.0 63.0 0.0 . 95 . . Atlas-SNP AKAP13 11214 hgsc.bcm.edu hg19 15 86124904 86124904 + Nonsense_Mutation SNP C C G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . AKAP13 NM_007200 exon7 c.C3605G p.S1202X AGCTCTCAGCCCA . 56.0 11.0 58.0 0.0 . 394 . . Atlas-SNP AGBL1 123624 hgsc.bcm.edu hg19 15 86814917 86814917 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . AGBL1 NM_152336 exon14 c.C1917T p.G639G GACAGGCCATGAA . 105.0 35.0 97.0 0.0 . 151 . . Atlas-SNP LONP2 83752 hgsc.bcm.edu hg19 16 48385598 48385598 + Missense_Mutation SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . LONP2 NM_031490 exon15 c.T2444C p.V815A GCAACGTACGACA . 87.0 26.0 75.0 0.0 . 63 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11650915 11650915 + Missense_Mutation SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . DNAH9 NM_001372 exon32 c.T6442C p.F2148L TCTGTATTTGTGG . 83.0 29.0 51.0 0.0 . 695 . . Atlas-SNP CRLF3 51379 hgsc.bcm.edu hg19 17 29123225 29123225 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . CRLF3 NM_015986 exon4 c.G556A p.E186K GTTCTTCTATCTG . 121.0 10.0 105.0 0.0 . 36 . . Atlas-SNP AP2B1 163 hgsc.bcm.edu hg19 17 33968894 33968894 + Splice_Site SNP A A T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . AP2B1 NM_001282 exon12 c.1438-2A>T . CTGTTTAGGTGCA . 62.0 22.0 60.0 0.0 . 70 . . Atlas-SNP HDAC5 10014 hgsc.bcm.edu hg19 17 42171077 42171077 + Missense_Mutation SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . HDAC5 NM_001015053 exon4 c.C223A p.Q75K GTTGCTGCTCCCG . 121.0 53.0 80.0 0.0 . 67 . . Atlas-SNP HDAC5 10014 hgsc.bcm.edu hg19 17 42171078 42171078 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . HDAC5 NM_001015053 exon4 c.G222A p.E74E TTGCTGCTCCCGC . 119.0 52.0 80.0 0.0 . 67 . . Atlas-SNP ITGA2B 3674 hgsc.bcm.edu hg19 17 42452979 42452979 + Missense_Mutation SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ITGA2B NM_000419 exon26 c.C2707A p.L903I CCTGAAGCCTCGA . 100.0 40.0 99.0 0.0 . 88 . . Atlas-SNP OR4D2 124538 hgsc.bcm.edu hg19 17 56247048 56247048 + Missense_Mutation SNP A A T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . OR4D2 NM_001004707 exon1 c.A32T p.D11V TATCAGACTTTGT . 111.0 45.0 141.0 0.0 . 48 . . Atlas-SNP SECTM1 6398 hgsc.bcm.edu hg19 17 80280192 80280192 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . SECTM1 NM_003004 exon5 c.G592A p.A198T GCTGGGCTCCCGC . 80.0 34.0 90.0 0.0 . 14 . . Atlas-SNP FN3KRP 79672 hgsc.bcm.edu hg19 17 80684867 80684867 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . FN3KRP NM_024619 exon6 c.C750T p.G250G AGCTGGCATGTTT . 109.0 41.0 101.0 0.0 . 31 . . Atlas-SNP LAMA3 3909 hgsc.bcm.edu hg19 18 21343451 21343451 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . LAMA3 NM_001127717 exon8 c.C1146T p.G382G CCAGGGCATCTAT . 105.0 40.0 106.0 0.0 . 397 . . Atlas-SNP TTC39C 125488 hgsc.bcm.edu hg19 18 21649143 21649143 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TTC39C NM_001135993 exon4 c.C368T p.P123L CCGCCCCCTCTAT . 127.0 55.0 104.0 0.0 . 83 . . Atlas-SNP TAF4B 6875 hgsc.bcm.edu hg19 18 23937719 23937719 + Silent SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TAF4B NM_005640 exon14 c.T2382A p.I794I AGCTATTGGACCA . 560.0 219.0 419.0 1.0 . 71 . . Atlas-SNP SAFB 6294 hgsc.bcm.edu hg19 19 5645350 5645350 + Missense_Mutation SNP A A G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . SAFB NM_002967 exon5 c.A549G p.I183M ACAGATAGAGGAC . 137.0 36.0 76.0 0.0 . 74 . . Atlas-SNP FBN3 84467 hgsc.bcm.edu hg19 19 8191482 8191482 + Silent SNP G G A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . FBN3 NM_032447 exon19 c.C2424T p.T808T GCCCTTGGTGCTG . 72.0 13.0 44.0 0.0 . 300 . . Atlas-SNP DOCK6 57572 hgsc.bcm.edu hg19 19 11339658 11339658 + Silent SNP G G A rs201482446 bycluster;by1000genomes;alternate_allele TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . DOCK6 NM_020812 exon23 c.C2772T p.R924R GGCCTCGCGTACG . 163.0 47.0 129.0 0.0 . 104 . G|0.998;C|0.002 Atlas-SNP ZNF20 7568 hgsc.bcm.edu hg19 19 12244794 12244794 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ZNF20 NM_021143 exon4 c.G207A p.M69I CTCTCTCATAAGA . 71.0 22.0 27.0 0.0 . 86 . . Atlas-SNP MVB12A 93343 hgsc.bcm.edu hg19 19 17534830 17534830 + Missense_Mutation SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . . NM_138401 exon7 c.C656T p.P219L GGGTTCCCTTCAC . 42.0 14.0 25.0 0.0 . . . . Atlas-SNP LPAR2 9170 hgsc.bcm.edu hg19 19 19737371 19737371 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . LPAR2 NM_004720 exon2 c.G723A p.K241K AACAGTCTTGACC . 221.0 57.0 152.0 0.0 . 28 . . Atlas-SNP ZNF14 7561 hgsc.bcm.edu hg19 19 19823467 19823467 + Missense_Mutation SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ZNF14 NM_021030 exon4 c.A623G p.Y208C TGGTAATATATAA . 179.0 45.0 114.0 0.0 . 89 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 39068789 39068789 + Missense_Mutation SNP T T A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RYR1 NM_000540 exon99 c.T14309A p.M4770K GGCTCATGTCCAT . 111.0 34.0 81.0 0.0 . 708 . . Atlas-SNP FCGBP 8857 hgsc.bcm.edu hg19 19 40366455 40366455 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . FCGBP NM_003890 exon30 c.G13779A p.G4593G GCTGTCCCCATCG . 260.0 56.0 147.0 0.0 . 416 . . Atlas-SNP HNRNPUL1 11100 hgsc.bcm.edu hg19 19 41787180 41787180 + Silent SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . HNRNPUL1 NM_007040 exon7 c.G999T p.A333A CTTTGCGGTGAGT . 203.0 46.0 87.0 0.0 . 73 . . Atlas-SNP IRGC 56269 hgsc.bcm.edu hg19 19 44223843 44223843 + Missense_Mutation SNP T T G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . IRGC NM_019612 exon2 c.T1133G p.F378C TCAGCTTTGGCGC . 113.0 29.0 69.0 0.0 . 67 . . Atlas-SNP SHANK1 50944 hgsc.bcm.edu hg19 19 51170365 51170365 + Missense_Mutation SNP C C A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . SHANK1 NM_016148 exon22 c.G4852T p.D1618Y TGGAGTCCAGGGT . 110.0 30.0 48.0 0.0 . 210 . . Atlas-SNP KLK6 5653 hgsc.bcm.edu hg19 19 51462563 51462563 + Missense_Mutation SNP C C A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . KLK6 NM_001012964 exon6 c.G592T p.G198W GACCCCCAGAATC . 193.0 42.0 126.0 0.0 . 35 . . Atlas-SNP CD33 945 hgsc.bcm.edu hg19 19 51729149 51729149 + Missense_Mutation SNP A A G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . CD33 NM_001772 exon3 c.A509G p.E170G CCTGTGAGCAGGG . 97.0 19.0 52.0 0.0 . 55 . . Atlas-SNP ZNF845 91664 hgsc.bcm.edu hg19 19 53855788 53855788 + Silent SNP A A G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ZNF845 NM_138374 exon4 c.A1860G p.S620S TCGTTCATACCTT . 136.0 61.0 89.0 0.0 . 101 . . Atlas-SNP CDC42EP5 148170 hgsc.bcm.edu hg19 19 54976410 54976410 + Missense_Mutation SNP C C A novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . CDC42EP5 NM_145057 exon3 c.G322T p.D108Y CCGCGTCCATGAC . 28.0 8.0 25.0 0.0 . 4 . . Atlas-SNP PPP6R1 22870 hgsc.bcm.edu hg19 19 55756527 55756527 + Silent SNP C C T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PPP6R1 NM_014931 exon5 c.G579A p.Q193Q CAGCCGCTGGACG . 128.0 23.0 60.0 0.0 . 63 . . Atlas-SNP BPIFB4 149954 hgsc.bcm.edu hg19 20 31671301 31671301 + Missense_Mutation SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . . NM_182519 exon3 c.G298T p.G100W CAGCTGGGGGGCA . 124.0 55.0 116.0 0.0 . . . . Atlas-SNP CHD6 84181 hgsc.bcm.edu hg19 20 40127986 40127986 + Silent SNP T T C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . CHD6 NM_032221 exon6 c.A864G p.E288E ATCATCTTCTGGA . 64.0 31.0 77.0 0.0 . 312 . . Atlas-SNP ST13 6767 hgsc.bcm.edu hg19 22 41252470 41252470 + Silent SNP G G C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . ST13 NM_003932 exon1 c.C75G p.T25T TTCCTCGGTGTGC . 482.0 27.0 399.0 0.0 . 16 . . Atlas-SNP CAPN6 827 hgsc.bcm.edu hg19 X 110490682 110490682 + Missense_Mutation SNP G G T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . CAPN6 NM_014289 exon12 c.C1657A p.P553T GGACAGGAGAACG . 137.0 16.0 160.0 0.0 . 120 . . Atlas-SNP GRIA3 2892 hgsc.bcm.edu hg19 X 122551286 122551286 + Missense_Mutation SNP A A C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . GRIA3 NM_000828 exon11 c.A1534C p.T512P ACTATAACATTGG . 299.0 129.0 145.0 0.0 . 386 . . Atlas-SNP LOC389895 0 hgsc.bcm.edu hg19 X 139174143 139174143 + Missense_Mutation SNP T T G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . . NM_001271560 exon1 c.T242G p.L81R AAGGACTTTCCAT . 16.0 8.0 3.0 0.0 . . . . Atlas-SNP SLC17A7 57030 hgsc.bcm.edu hg19 19 49937289 49937289 + Frame_Shift_Del DEL C C - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce SLC17A7,colon,carcinoma,0,1 SLC17A7 NM_020309 exon6 c.653delC p.A218fs . . 437.0 81.0 201.0 0.0 . 57 . . Atlas-Indel,Pindel WAPAL 23063 hgsc.bcm.edu hg19 10 88231999 88232010 + In_Frame_Del DEL TTAAGCCACTTA TTAAGCCACTTA - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 TTAAGCCACTTA TTAAGCCACTTA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce WAPAL,NS,carcinoma,0,1 WAPAL NM_015045 exon7 c.1986_1997del p.662_666del . . 343.0 100.0 335.0 0.0 . 81 . . Atlas-Indel,Pindel PCK1 5105 hgsc.bcm.edu hg19 20 56140179 56140191 + Frame_Shift_Del DEL GCAGAACATAAAG GCAGAACATAAAG - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 GCAGAACATAAAG GCAGAACATAAAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PCK1 NM_002591 exon9 c.1401_1413del p.467_471del . . 149.0 23.0 213.0 0.0 . 95 . . Atlas-INDEL CELSR2 1952 hgsc.bcm.edu hg19 1 109793071 109793072 + Frame_Shift_Ins INS - - C novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . CELSR2 NM_001408 exon1 c.370_371insC p.S124fs . . 132.0 52.0 116.0 0.0 . 228 . . Atlas-Indel,Pindel TMED1 11018 hgsc.bcm.edu hg19 19 10943778 10943791 + Frame_Shift_Del DEL CCCGCTCCAAGTTG CCCGCTCCAAGTTG - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 CCCGCTCCAAGTTG CCCGCTCCAAGTTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TMED1 NM_006858 exon4 c.565_578del p.189_193del . . 119.0 33.0 106.0 0.0 . 22 . . Atlas-Indel,Pindel MRPL35 51318 hgsc.bcm.edu hg19 2 86434440 86434440 + Frame_Shift_Del DEL T T - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce MRPL35,NS,carcinoma,0,1 MRPL35 NM_145644 exon3 c.367delG p.V123X . . 153.0 59.0 145.0 0.0 . 23 . . Atlas-Indel,Pindel RGPD2 729857 hgsc.bcm.edu hg19 2 88095295 88095295 + Frame_Shift_Del DEL G G - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RGPD2 NM_001078170 exon10 c.1347delT p.A449fs . . 1040.0 71.0 927.0 0.0 . 14 . . Atlas-INDEL REV3L 5980 hgsc.bcm.edu hg19 6 111695854 111695854 + Frame_Shift_Del DEL G G - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . REV3L NM_002912 exon13 c.3705delT p.S1235fs . . 76.0 30.0 61.0 0.0 . 386 . . Atlas-Indel,Pindel DIP2A 23181 hgsc.bcm.edu hg19 21 47983839 47983839 + Frame_Shift_Del DEL G G - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . DIP2A NM_015151 exon35 c.4157delT p.L1386fs . . 76.0 33.0 98.0 0.0 . 332 . . Atlas-Indel,Pindel TIMM50 92609 hgsc.bcm.edu hg19 19 39971479 39971479 + Frame_Shift_Del DEL T T - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TIMM50 NM_001001563 exon1 c.294delG p.A98fs . . 85.0 21.0 49.0 0.0 . 37 . . Atlas-Indel,Pindel KRT75 9119 hgsc.bcm.edu hg19 12 52826861 52826861 + Frame_Shift_Del DEL A A - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . KRT75 NM_004693 exon2 c.675delG p.L225fs . . 116.0 51.0 129.0 0.0 . 75 . . Atlas-Indel,Pindel PCF11 51585 hgsc.bcm.edu hg19 11 82877748 82877749 + In_Frame_Ins INS - - AAT novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PCF11 NM_015885 exon5 c.1809_1810insAAT p.E603delinsEN . . 428.0 91.0 353.0 0.0 . 220 . . Atlas-Indel,Pindel AHDC1 27245 hgsc.bcm.edu hg19 1 27874319 27874361 + Frame_Shift_Del DEL GTGGCCCAGGCTGGCCCCCTGGAGTCCATGCTTGAGGGGCTCG GTGGCCCAGGCTGGCCCCCTGGAGTCCATGCTTGAGGGGCTCG - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 GTGGCCCAGGCTGGCCCCCTGGAGTCCATGCTTGAGGGGCTCG GTGGCCCAGGCTGGCCCCCTGGAGTCCATGCTTGAGGGGCTCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . AHDC1 NM_001029882 exon6 c.4267_4309del p.1423_1437del . . 52.0 16.0 86.0 0.0 . 98 . . Atlas-Indel,Pindel NTAN1 123803 hgsc.bcm.edu hg19 16 15131989 15131990 + Frame_Shift_Ins INS - - T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce .,1 NTAN1 NM_173474 exon10 c.832_833insA p.H278fs . . 165.0 65.0 142.0 0.0 . 21 . . Atlas-Indel,Pindel DNAJA4 55466 hgsc.bcm.edu hg19 15 78556708 78556709 + Frame_Shift_Ins INS - - AAAGG novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . DNAJA4 NM_018602 exon1 c.53_54insAAAGG p.P18fs . . 20.0 10.0 26.0 0.0 . 63 . . Atlas-Indel,Pindel PCK1 5105 hgsc.bcm.edu hg19 20 56140173 56140177 + Frame_Shift_Del DEL GCGGC GCGGC - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 GCGGC GCGGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PCK1 NM_002591 exon9 c.1395_1399del p.465_467del . . 156.0 23.0 222.0 0.0 . 95 . . Atlas-INDEL CSDE1 7812 hgsc.bcm.edu hg19 1 115262274 115262275 + Frame_Shift_Ins INS - - G novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . CSDE1 NM_001242891 exon19 c.2280_2281insC p.G760fs . . 107.0 37.0 93.0 0.0 . 145 . . Atlas-Indel,Pindel RGPD3 653489 hgsc.bcm.edu hg19 2 107053238 107053238 + Frame_Shift_Del DEL G G - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RGPD3 NM_001144013 exon10 c.1350delT p.A450fs . . 1291.0 193.0 1114.0 0.0 . 316 . . Atlas-INDEL HSD11B1 3290 hgsc.bcm.edu hg19 1 209879238 209879239 + Frame_Shift_Ins INS - - GGAGCCCATGTGGT novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . HSD11B1 NM_005525 exon2 c.171_172insGGAGCCCATGTGGT p.M57fs . . 136.0 16.0 132.0 0.0 . 35 . . Atlas-Indel,Pindel EPHA8 2046 hgsc.bcm.edu hg19 1 22902805 22902806 + Frame_Shift_Del DEL CA CA - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 CA CA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . EPHA8 NM_020526 exon3 c.254_255del p.85_85del . . 249.0 96.0 248.0 0.0 . 221 . . Atlas-Indel,Pindel DKKL1 27120 hgsc.bcm.edu hg19 19 49868878 49868879 + In_Frame_Ins INS - - CCTCTCCAG novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . DKKL1 NM_014419 exon3 c.296_297insCCTCTCCAG p.T99delinsTLSS . . 142.0 15.0 80.0 0.0 . 23 . . Atlas-Indel,Pindel TTR 7276 hgsc.bcm.edu hg19 18 29175221 29175222 + Splice_Site DEL GA GA - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 GA GA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . TTR . . . . . . 163.0 66.0 152.0 0.0 . 21 . . Atlas-Indel,Pindel RGPD4 285190 hgsc.bcm.edu hg19 2 108475642 108475642 + Frame_Shift_Del DEL C C - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RGPD4 NM_182588 exon10 c.1348delG p.A450fs . . 1263.0 228.0 1028.0 0.0 . 112 . . Atlas-INDEL AOAH 313 hgsc.bcm.edu hg19 7 36570105 36570124 + Frame_Shift_Del DEL AGAGTTGCTCTGCTCTCTGA AGAGTTGCTCTGCTCTCTGA - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 AGAGTTGCTCTGCTCTCTGA AGAGTTGCTCTGCTCTCTGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . AOAH NM_001637 exon19 c.1426_1442del p.476_481del . . 82.0 14.0 93.0 0.0 . 79 . . Atlas-Indel,Pindel RFC1 5981 hgsc.bcm.edu hg19 4 39344053 39344054 + Frame_Shift_Ins INS - - T novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . RFC1 NM_002913 exon4 c.243_244insA p.N81fs . . 116.0 12.0 110.0 0.0 . 114 . . Atlas-Indel,Pindel PCK1 5105 hgsc.bcm.edu hg19 20 56140173 56140191 + Frame_Shift_Del DEL GCGGCTGCAGAACATAAAG GCGGCTGCAGAACATAAAG - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 GCGGCTGCAGAACATAAAG GCGGCTGCAGAACATAAAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . PCK1 NM_002591 exon9 c.1395_1413del p.465_471del . . 158.0 33.0 199.0 0.0 . 95 . . Pindel SFXN4 119559 hgsc.bcm.edu hg19 10 120917178 120917237 + In_Frame_Del DEL ATTTGACAGATTCTAAAAATACCTACTCCTAAGAAAGTTGAAGAAGCAACGGCTCCCGCC ATTTGACAGATTCTAAAAATACCTACTCCTAAGAAAGTTGAAGAAGCAACGGCTCCCGCC - novel TCGA-G3-AAV0-01A-11D-A36X-10 TCGA-G3-AAV0-10A-01D-A370-10 ATTTGACAGATTCTAAAAATACCTACTCCTAAGAAAGTTGAAGAAGCAACGGCTCCCGCC ATTTGACAGATTCTAAAAATACCTACTCCTAAGAAAGTTGAAGAAGCAACGGCTCCCGCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq cf7c19ad-4570-4952-9604-41305e544984 60d8b369-5133-44f7-9021-71ffb112a0ce . SFXN4 NM_213649 exon9 c.505_537del p.169_179del . . 324.0 58.0 431.0 0.0 . 24 . . Pindel