Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
HIVEP3	59269	hgsc.bcm.edu	hg19	1	42047687	42047687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	HIVEP3	NM_024503	exon4	c.C2782A	p.L928M	GAGACAGAGGCAC	.	127.0	9.0	137.0	0.0	.	235	.	.	Atlas-SNP
SLC44A3	126969	hgsc.bcm.edu	hg19	1	95307574	95307574	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	SLC44A3	NM_001114106	exon8	c.G779C	p.W260S	TTTTATGGTGGCT	.	106.0	7.0	80.0	0.0	.	109	.	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155449069	155449069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	ASH1L	NM_018489	exon3	c.C3592A	p.P1198T	CACTGGGAATGGT	.	140.0	31.0	102.0	0.0	.	279	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158646003	158646003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	SPTA1	NM_003126	exon8	c.A1040G	p.D347G	ACCAGATCTTCTT	.	129.0	39.0	67.0	0.0	.	720	.	.	Atlas-SNP
C1orf112	55732	hgsc.bcm.edu	hg19	1	169775144	169775144	+	Splice_Site	SNP	G	G	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	C1orf112	NM_018186	exon7	c.479-1G>C	.	TTTGCAGTTATTC	.	54.0	11.0	37.0	0.0	.	74	.	.	Atlas-SNP
ACBD6	84320	hgsc.bcm.edu	hg19	1	180471265	180471265	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	ACBD6	NM_032360	exon1	c.T137G	p.F46C	TTCTCAAACAGCT	.	208.0	51.0	206.0	0.0	.	20	.	.	Atlas-SNP
NEK2	4751	hgsc.bcm.edu	hg19	1	211842562	211842562	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	NEK2	NM_002497	exon6	c.C878G	p.P293R	TTTTCTGGCTCTC	.	53.0	10.0	53.0	0.0	.	49	.	.	Atlas-SNP
COX20	116228	hgsc.bcm.edu	hg19	1	244999029	244999029	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	.	NM_198076	exon1	c.C13G	p.P5A	GCCCCGCCGGAGC	.	83.0	19.0	54.0	0.0	.	.	.	.	Atlas-SNP
SNTG2	54221	hgsc.bcm.edu	hg19	2	1271232	1271232	+	Silent	SNP	C	C	A	rs370848778	alternate_allele	TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	SNTG2	NM_018968	exon14	c.C1173A	p.I391I	CAGCATCGTGGCC	.	164.0	20.0	158.0	0.0	.	125	.	.	Atlas-SNP
SLC8A1	6546	hgsc.bcm.edu	hg19	2	40656037	40656037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	SLC8A1,face,carcinoma,0,1	SLC8A1	NM_001252624	exon1	c.G1384A	p.G462R	CAGTTCCTTCAGT	.	54.0	4.0	72.0	0.0	.	221	.	.	Atlas-SNP
VRK2	7444	hgsc.bcm.edu	hg19	2	58276008	58276008	+	Silent	SNP	A	A	G	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	VRK2	NM_001130480	exon2	c.A42G	p.P14P	TATTCCATTTCCA	.	183.0	22.0	189.0	0.0	.	46	.	.	Atlas-SNP
UGGT1	56886	hgsc.bcm.edu	hg19	2	128877939	128877939	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	UGGT1	NM_020120	exon9	c.C882T	p.H294H	TCTGCACCCCGAC	.	98.0	17.0	93.0	0.0	.	126	.	.	Atlas-SNP
RBM44	375316	hgsc.bcm.edu	hg19	2	238726871	238726871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	RBM44	NM_001080504	exon3	c.A1312G	p.T438A	AGCAGTACCACAA	.	184.0	14.0	160.0	0.0	.	167	.	.	Atlas-SNP
CACNA2D2	9254	hgsc.bcm.edu	hg19	3	50416567	50416567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	CACNA2D2	NM_001174051	exon12	c.C1216A	p.R406S	GCACGCGGTCCTC	.	57.0	13.0	56.0	0.0	.	82	.	.	Atlas-SNP
CACNA1D	776	hgsc.bcm.edu	hg19	3	53834294	53834294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	CACNA1D	NM_000720	exon42	c.C5002T	p.H1668Y	ACACTGCATGACA	.	92.0	11.0	94.0	0.0	.	324	.	.	Atlas-SNP
FOXP1	27086	hgsc.bcm.edu	hg19	3	71008538	71008538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	FOXP1	NM_001244810	exon21	c.C1942A	p.P648T	GTACAGGATGCCT	.	73.0	9.0	64.0	0.0	.	104	.	.	Atlas-SNP
MGLL	11343	hgsc.bcm.edu	hg19	3	127441291	127441291	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	MGLL	NM_007283	exon4	c.C381G	p.F127L	CAGAAGGAAGACA	.	82.0	10.0	91.0	0.0	.	19	.	.	Atlas-SNP
XRN1	54464	hgsc.bcm.edu	hg19	3	142030413	142030413	+	Silent	SNP	A	A	T	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	XRN1	NM_019001	exon42	c.T5061A	p.S1687S	TCTTGAAGAAGAG	.	143.0	23.0	144.0	0.0	.	138	.	.	Atlas-SNP
KCTD8	386617	hgsc.bcm.edu	hg19	4	44449696	44449696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	KCTD8,NS,carcinoma,0,1	KCTD8	NM_198353	exon1	c.G845T	p.R282L	GACAGGCGATCAA	.	66.0	9.0	98.0	1.0	.	96	.	.	Atlas-SNP
CCDC125	202243	hgsc.bcm.edu	hg19	5	68609823	68609823	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	CCDC125	NM_176816	exon2	c.G355C	p.E119Q	AAGTTTCATTAAG	.	76.0	9.0	93.0	0.0	.	41	.	.	Atlas-SNP
PCDHA5	56143	hgsc.bcm.edu	hg19	5	140203606	140203606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	PCDHA5	NM_018908	exon1	c.A2246G	p.Y749C	GGTCGTACTCGCA	.	168.0	16.0	156.0	0.0	.	361	.	.	Atlas-SNP
PCDHA7	56141	hgsc.bcm.edu	hg19	5	140215307	140215307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	PCDHA7	NM_031852	exon1	c.G1339A	p.D447N	GTGGCCGACGTGA	.	161.0	11.0	182.0	0.0	.	367	.	.	Atlas-SNP
HIST1H1A	3024	hgsc.bcm.edu	hg19	6	26017773	26017773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	HIST1H1A	NM_005325	exon1	c.C188T	p.A63V	AGAGCTGCCAACG	.	85.0	9.0	102.0	0.0	.	25	.	.	Atlas-SNP
HIST1H2AG	8969	hgsc.bcm.edu	hg19	6	27101160	27101160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	HIST1H2AG,NS,carcinoma,0,1	HIST1H2AG	NM_021064	exon1	c.G310A	p.A104T	ACCATCGCACAGG	.	141.0	19.0	189.0	1.0	.	37	.	.	Atlas-SNP
CDC5L	988	hgsc.bcm.edu	hg19	6	44394452	44394452	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	CDC5L	NM_001253	exon13	c.G1884C	p.E628D	AGAAGAGCTGAAA	.	102.0	10.0	97.0	0.0	.	86	.	.	Atlas-SNP
COL9A1	1297	hgsc.bcm.edu	hg19	6	70964854	70964854	+	Missense_Mutation	SNP	G	G	A	rs141895443	bycluster	TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	COL9A1	NM_001851	exon23	c.C1610T	p.T537M	CATACCGTGTCTC	.	118.0	14.0	123.0	0.0	.	228	.	G|1.000;A|0.000	Atlas-SNP
CPA5	93979	hgsc.bcm.edu	hg19	7	130007818	130007818	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	CPA5	NM_080385	exon12	c.C1110T	p.I370I	CAGCATCAGCACC	.	57.0	6.0	81.0	0.0	.	61	.	.	Atlas-SNP
ASB10	136371	hgsc.bcm.edu	hg19	7	150883497	150883497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	ASB10	NM_001142459	exon2	c.G566T	p.R189L	GGCCCCCGGCAGA	.	117.0	9.0	98.0	0.0	.	99	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2823435	2823435	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	CSMD1	NM_033225	exon59	c.C9142T	p.Q3048X	CAAACTGGATGCC	.	348.0	19.0	142.0	0.0	.	1469	.	.	Atlas-SNP
APBA1	320	hgsc.bcm.edu	hg19	9	72071259	72071259	+	Silent	SNP	A	A	T	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	APBA1	NM_001163	exon8	c.T1692A	p.P564P	GGAGCGAGGCATC	.	75.0	13.0	69.0	0.0	.	96	.	.	Atlas-SNP
GALNT12	79695	hgsc.bcm.edu	hg19	9	101589127	101589127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	GALNT12	NM_024642	exon3	c.G635A	p.R212Q	GAGCCCGGCTGCT	.	64.0	14.0	80.0	0.0	.	37	.	.	Atlas-SNP
SAA2	6289	hgsc.bcm.edu	hg19	11	18266927	18266927	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	SAA2	NM_030754	exon4	c.C366T	p.Y122Y	AGCTCAGTATTTC	.	104.0	10.0	96.0	0.0	.	22	.	.	Atlas-SNP
MTA2	9219	hgsc.bcm.edu	hg19	11	62364838	62364838	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	MTA2	NM_004739	exon8	c.C643T	p.Q215X	TTGGCTGCCGAAT	.	135.0	19.0	141.0	0.0	.	54	.	.	Atlas-SNP
MTA2	9219	hgsc.bcm.edu	hg19	11	62364839	62364839	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	MTA2	NM_004739	exon8	c.G642A	p.R214R	TGGCTGCCGAATG	.	134.0	18.0	141.0	0.0	.	54	.	.	Atlas-SNP
NEDD1	121441	hgsc.bcm.edu	hg19	12	97331084	97331084	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	NEDD1	NM_001135175	exon8	c.G1051C	p.A351P	AGAGAAGCACCTG	.	129.0	17.0	114.0	0.0	.	47	.	.	Atlas-SNP
ANKRD13A	88455	hgsc.bcm.edu	hg19	12	110457106	110457106	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	ANKRD13A	NM_033121	exon6	c.T707G	p.L236R	CCAGCCTCGATAC	.	192.0	21.0	213.0	0.0	.	39	.	.	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	hg19	14	104638072	104638072	+	Silent	SNP	C	C	T	rs368488344	alternate_allele	TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	KIF26A	NM_015656	exon6	c.C1126T	p.L376L	GTTATGCTGCGGA	.	85.0	6.0	90.0	0.0	.	84	.	.	Atlas-SNP
CHRNA3	1136	hgsc.bcm.edu	hg19	15	78894061	78894061	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	CHRNA3	NM_000743	exon5	c.T923G	p.L308R	AACAGGAGGTACT	.	91.0	18.0	105.0	0.0	.	56	.	.	Atlas-SNP
CRAMP1L	57585	hgsc.bcm.edu	hg19	16	1691138	1691138	+	Splice_Site	SNP	A	A	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	CRAMP1L	NM_020825	exon5	c.779-2A>C	.	ATTTAAAGGTATG	.	53.0	12.0	49.0	0.0	.	60	.	.	Atlas-SNP
LPCAT2	54947	hgsc.bcm.edu	hg19	16	55562430	55562430	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	LPCAT2	NM_017839	exon3	c.T453A	p.D151E	CTTTGATGGAATT	.	169.0	26.0	197.0	0.0	.	35	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577115	7577115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	TP53_ENST00000455263,NS,other,+1,2	TP53	NM_000546	exon8	c.T823C	p.C275R	AGGCACAAACACG	.	76.0	13.0	77.0	0.0	.	33396	.	.	Atlas-SNP
WNT9B	7484	hgsc.bcm.edu	hg19	17	44954034	44954034	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	WNT9B	NM_003396	exon4	c.G1024C	p.E342Q	TACGTGGAGTGCC	.	173.0	24.0	167.0	0.0	.	37	.	.	Atlas-SNP
ACTL9	284382	hgsc.bcm.edu	hg19	19	8808811	8808811	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	ACTL9	NM_178525	exon1	c.T241A	p.C81S	GCTGGCAGCCCAG	.	84.0	10.0	78.0	0.0	.	74	.	.	Atlas-SNP
ZNF317	57693	hgsc.bcm.edu	hg19	19	9267979	9267979	+	Silent	SNP	T	T	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	ZNF317	NM_020933	exon4	c.T198C	p.F66F	GGACTTTACCGAG	.	103.0	20.0	107.0	0.0	.	61	.	.	Atlas-SNP
ZNF432	9668	hgsc.bcm.edu	hg19	19	52537481	52537481	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	ZNF432	NM_014650	exon5	c.C1451G	p.P484R	CTGTAAGGTTTCT	.	79.0	9.0	67.0	0.0	.	172	.	.	Atlas-SNP
NDUFAF5	79133	hgsc.bcm.edu	hg19	20	13797788	13797788	+	Missense_Mutation	SNP	G	G	A	rs142611230		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	C20orf7,colon,carcinoma,0,1	.	NM_024120	exon11	c.G970A	p.A324T	GGTTCCGCAACTG	.	166.0	20.0	148.0	0.0	.	.	.	G|1.000;A|0.000	Atlas-SNP
HRH3	11255	hgsc.bcm.edu	hg19	20	60791400	60791400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	HRH3	NM_007232	exon3	c.G1000A	p.E334K	GCTTCTCCAGCGA	.	84.0	12.0	93.0	0.0	.	25	.	.	Atlas-SNP
PKDREJ	10343	hgsc.bcm.edu	hg19	22	46656291	46656291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	PKDREJ	NM_006071	exon1	c.T2929C	p.S977P	TCAAGGACCCATC	.	129.0	7.0	126.0	0.0	.	195	.	.	Atlas-SNP
POLA1	5422	hgsc.bcm.edu	hg19	X	24861714	24861714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	POLA1	NM_016937	exon34	c.G3949A	p.A1317T	TGTAAGGCTTCAC	.	234.0	20.0	220.0	0.0	.	117	.	.	Atlas-SNP
RAB40AL	282808	hgsc.bcm.edu	hg19	X	102192893	102192893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	RAB40AL	NM_001031834	exon1	c.T647C	p.I216T	TCCCCATTGCCTT	.	116.0	6.0	116.0	0.0	.	33	.	.	Atlas-SNP
CPSF4	10898	hgsc.bcm.edu	hg19	7	99047916	99047917	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	CPSF4	NM_001081559	exon4	c.325_326insA	p.E109fs	.	.	110.0	28.0	113.0	0.0	.	24	.	.	Atlas-INDEL
GUK1	2987	hgsc.bcm.edu	hg19	1	228328057	228328057	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GJ-A3OU-01A-31D-A382-10	TCGA-GJ-A3OU-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ee0963bc-f3c2-4738-bad9-84f54c572b69	a277f049-e97c-460c-8166-8424f4301d13	.	GUK1	NM_001242840	exon1	c.53delC	p.P18fs	.	.	72.0	12.0	80.0	0.0	.	34	.	.	Atlas-INDEL