Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CASZ1	54897	hgsc.bcm.edu	hg19	1	10713785	10713785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CASZ1	NM_001079843	exon11	c.C2329T	p.P777S	CCTGGGGCAGCAG	.	56.0	14.0	86.0	0.0	.	150	.	.	Atlas-SNP
EXTL1	2134	hgsc.bcm.edu	hg19	1	26355761	26355761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	EXTL1,NS,carcinoma,0,1	EXTL1	NM_004455	exon2	c.T857C	p.F286S	CGCGCTTCCTCCA	.	142.0	50.0	148.0	0.0	.	61	.	.	Atlas-SNP
EBNA1BP2	10969	hgsc.bcm.edu	hg19	1	43630464	43630464	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	EBNA1BP2	NM_001159936	exon9	c.A885G	p.K295K	CCGTCGTTTAGCA	.	83.0	4.0	98.0	0.0	.	37	.	.	Atlas-SNP
KCNA2	3737	hgsc.bcm.edu	hg19	1	111147065	111147065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KCNA2	NM_001204269	exon3	c.C340T	p.R114W	AAAACCGAATTTC	.	46.0	15.0	76.0	0.0	.	61	.	.	Atlas-SNP
NES	10763	hgsc.bcm.edu	hg19	1	156641173	156641173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NES	NM_006617	exon4	c.A2807T	p.E936V	TCCTCCTCCAGAG	.	113.0	6.0	73.0	0.0	.	196	.	.	Atlas-SNP
OR10Z1	128368	hgsc.bcm.edu	hg19	1	158576234	158576234	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OR10Z1	NM_001004478	exon1	c.G6T	p.G2G	AATGGGGCAGACC	.	72.0	39.0	93.0	0.0	.	99	.	.	Atlas-SNP
CD244	51744	hgsc.bcm.edu	hg19	1	160806007	160806007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CD244	NM_001166663	exon6	c.T887C	p.I296T	GAGTAGATGGTGC	.	97.0	46.0	105.0	0.0	.	77	.	.	Atlas-SNP
TNR	7143	hgsc.bcm.edu	hg19	1	175299224	175299224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	TNR,NS,carcinoma,0,1	TNR	NM_003285	exon21	c.A3779G	p.Y1260C	CCGTTGTAGCTTC	.	106.0	27.0	91.0	0.0	.	399	.	.	Atlas-SNP
EDEM3	80267	hgsc.bcm.edu	hg19	1	184702094	184702094	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	EDEM3	NM_025191	exon6	c.C489A	p.I163I	CAGCATGATTGCC	.	75.0	12.0	86.0	0.0	.	63	.	.	Atlas-SNP
FAM5C	339479	hgsc.bcm.edu	hg19	1	190195248	190195248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FAM5C	NM_199051	exon6	c.A925C	p.T309P	TCCAGGTTTCAGT	.	57.0	29.0	72.0	0.0	.	343	.	.	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	hg19	1	197111554	197111554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ASPM	NM_001206846	exon3	c.A1828G	p.K610E	ATGTTTTAGGCTC	.	93.0	27.0	92.0	0.0	.	444	.	.	Atlas-SNP
DEGS1	8560	hgsc.bcm.edu	hg19	1	224371102	224371102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DEGS1	NM_003676	exon1	c.C64T	p.R22W	GCCGACCGGCGCC	.	90.0	22.0	73.0	0.0	.	24	.	.	Atlas-SNP
TTC13	79573	hgsc.bcm.edu	hg19	1	231060591	231060591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TTC13	NM_024525	exon14	c.A1717G	p.R573G	ACCTTCTCCATTT	.	136.0	27.0	120.0	0.0	.	74	.	.	Atlas-SNP
ACVR2A	92	hgsc.bcm.edu	hg19	2	148680560	148680560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ACVR2A	NM_001616	exon9	c.A1096G	p.M366V	AGGTACATGGCTC	.	97.0	38.0	168.0	0.0	.	125	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152528994	152528994	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NEB	NM_004543	exon37	c.C4188A	p.A1396A	ATCCTGGGCCATC	.	210.0	91.0	344.0	0.0	.	1697	.	.	Atlas-SNP
SDPR	8436	hgsc.bcm.edu	hg19	2	192700908	192700908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SDPR	NM_004657	exon2	c.C1019A	p.A340E	AGGGACGCTTCGG	.	84.0	4.0	120.0	0.0	.	67	.	.	Atlas-SNP
SPAG16	79582	hgsc.bcm.edu	hg19	2	215274960	215274960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SPAG16	NM_024532	exon16	c.C1817A	p.A606E	ACGAGGCACACAC	.	186.0	47.0	216.0	0.0	.	134	.	.	Atlas-SNP
SLC16A14	151473	hgsc.bcm.edu	hg19	2	230914503	230914503	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLC16A14	NM_152527	exon3	c.T377G	p.L126R	ATGAAGAGATAAT	.	248.0	43.0	252.0	0.0	.	75	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238280705	238280705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	COL6A3	NM_004369	exon9	c.G3955T	p.V1319L	TGGACACGTACTC	.	77.0	20.0	88.0	0.0	.	608	.	.	Atlas-SNP
GRM7	2917	hgsc.bcm.edu	hg19	3	7494474	7494474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GRM7	NM_000844	exon6	c.T1355C	p.I452T	AGTATATACGCAA	.	124.0	43.0	159.0	0.0	.	223	.	.	Atlas-SNP
CSPG5	10675	hgsc.bcm.edu	hg19	3	47618646	47618646	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CSPG5	NM_006574	exon2	c.A870G	p.G290G	TCCACCTCCTACT	.	63.0	15.0	65.0	0.0	.	46	.	.	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52393979	52393979	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DNAH1	NM_015512	exon27	c.G4455A	p.Q1485Q	CATGCAGCGGGCA	.	176.0	69.0	203.0	0.0	.	534	.	.	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	hg19	3	108133086	108133086	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MYH15	NM_014981	exon31	c.G4198C	p.D1400H	TGGCATCCTCCAA	.	142.0	27.0	130.0	0.0	.	223	.	.	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178928226	178928226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	PIK3CA_ENST00000263967,scalp,carcinoma,0,8	PIK3CA	NM_006218	exon9	c.C1412T	p.P471L	AAACTCCATGCTT	.	99.0	4.0	114.0	0.0	.	8460	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3237426	3237426	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	HTT	NM_002111	exon63	c.G8706T	p.L2902L	CAAGCTGAGTGTG	.	56.0	27.0	97.0	0.0	.	221	.	.	Atlas-SNP
SLC34A2	10568	hgsc.bcm.edu	hg19	4	25671316	25671316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLC34A2	NM_006424	exon7	c.T683A	p.V228E	TGTCCGTGTTGGT	.	171.0	57.0	186.0	0.0	.	93	.	.	Atlas-SNP
PLK4	10733	hgsc.bcm.edu	hg19	4	128816239	128816239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PLK4	NM_014264	exon14	c.G2694T	p.W898C	TGGTTGGGCTACA	.	37.0	13.0	79.0	0.0	.	65	.	.	Atlas-SNP
UCP1	7350	hgsc.bcm.edu	hg19	4	141484571	141484571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	UCP1	NM_021833	exon3	c.G427A	p.A143T	TCTGTGCTTGAAG	.	118.0	24.0	134.0	0.0	.	33	.	.	Atlas-SNP
FAM160A1	729830	hgsc.bcm.edu	hg19	4	152571045	152571045	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FAM160A1	NM_001109977	exon11	c.C1852G	p.Q618E	CACATCCAGGAGA	.	101.0	15.0	147.0	0.0	.	60	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155163818	155163818	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DCHS2	NM_017639	exon22	c.T5683A	p.S1895T	CTTCAGAGGGGAG	.	89.0	34.0	100.0	0.0	.	594	.	.	Atlas-SNP
RAPGEF2	9693	hgsc.bcm.edu	hg19	4	160253698	160253698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	RAPGEF2	NM_014247	exon11	c.T1501C	p.S501P	CGCTACTCCATTC	.	169.0	43.0	231.0	0.0	.	171	.	.	Atlas-SNP
GALNTL6	442117	hgsc.bcm.edu	hg19	4	173942670	173942670	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GALNTL6	NM_001034845	exon12	c.C1532G	p.P511R	GTGAGCCACTGCA	.	113.0	44.0	168.0	0.0	.	102	.	.	Atlas-SNP
SORBS2	8470	hgsc.bcm.edu	hg19	4	186544299	186544299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SORBS2	NM_001270771	exon16	c.C2572A	p.H858N	GGCGGTGCAGGAT	.	55.0	4.0	68.0	0.0	.	300	.	.	Atlas-SNP
LMBRD2	92255	hgsc.bcm.edu	hg19	5	36124328	36124328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LMBRD2	NM_001007527	exon7	c.C787A	p.P263T	TCAATGGGTGATT	.	174.0	41.0	246.0	0.0	.	89	.	.	Atlas-SNP
PCDHGC3	5098	hgsc.bcm.edu	hg19	5	140857854	140857854	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PCDHGC3	NM_032402	exon1	c.G2171C	p.R724T	AGTCTAGAGACCT	.	68.0	7.0	68.0	0.0	.	173	.	.	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	hg19	5	160113232	160113232	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ATP10B	NM_025153	exon6	c.C324T	p.P108P	CATGGAGGGCATC	.	145.0	40.0	154.0	0.0	.	201	.	.	Atlas-SNP
GABRA1	2554	hgsc.bcm.edu	hg19	5	161324184	161324184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	GABRA1,NS,carcinoma,0,2	GABRA1	NM_001127643	exon11	c.C1127A	p.T376N	GCTACACCCCTAA	.	120.0	7.0	125.0	0.0	.	132	.	.	Atlas-SNP
SLIT3	6586	hgsc.bcm.edu	hg19	5	168233531	168233531	+	Silent	SNP	C	C	A	rs367972639	alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	SLIT3,colon,carcinoma,0,1	SLIT3	NM_001271946	exon9	c.G855T	p.T285T	GCTGCACGTGCAG	.	214.0	50.0	248.0	0.0	.	224	.	.	Atlas-SNP
DOK3	79930	hgsc.bcm.edu	hg19	5	176936802	176936802	+	Splice_Site	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DOK3	NM_024872	exon2	c.51+1G>A	.	CACGCACCTGGTT	.	125.0	30.0	158.0	0.0	.	41	.	.	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	hg19	6	16327885	16327885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ATXN1	NM_001128164	exon7	c.G657T	p.Q219H	CTGCTGCTGCTGC	.	109.0	12.0	80.0	0.0	.	117	.	.	Atlas-SNP
MTO1	25821	hgsc.bcm.edu	hg19	6	74183325	74183325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MTO1	NM_133645	exon4	c.C773T	p.P258L	ATATACCGGACAA	.	96.0	8.0	157.0	0.0	.	59	.	.	Atlas-SNP
CD109	135228	hgsc.bcm.edu	hg19	6	74446154	74446154	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CD109	NM_133493	exon5	c.C556G	p.L186V	AGTGATCTTGGAG	.	69.0	36.0	117.0	0.0	.	170	.	.	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	hg19	6	117638330	117638330	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ROS1	NM_002944	exon38	c.T6111C	p.Y2037Y	ACGCAAATAAGTA	.	126.0	6.0	214.0	0.0	.	728	.	.	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	hg19	6	160494391	160494391	+	Missense_Mutation	SNP	G	G	A	rs375863720		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	IGF2R	NM_000876	exon34	c.G4837A	p.V1613M	AGTTTCGTGTGCA	.	164.0	7.0	233.0	0.0	.	251	.	.	Atlas-SNP
GPR31	2853	hgsc.bcm.edu	hg19	6	167571101	167571101	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GPR31	NM_005299	exon1	c.C219T	p.F73F	CAGGTAGAAGGCG	.	170.0	47.0	265.0	0.0	.	44	.	.	Atlas-SNP
KIF25	3834	hgsc.bcm.edu	hg19	6	168443256	168443256	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KIF25	NM_030615	exon8	c.C845G	p.T282S	GAGTGACCGGGTT	.	56.0	31.0	105.0	0.0	.	75	.	.	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	hg19	7	77975281	77975281	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MAGI2	NM_012301	exon8	c.A1183T	p.T395S	GTTCTGTGTGGGG	.	83.0	4.0	106.0	0.0	.	246	.	.	Atlas-SNP
CALCR	799	hgsc.bcm.edu	hg19	7	93055779	93055779	+	Silent	SNP	G	G	A	rs145853724		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CALCR	NM_001164737	exon16	c.C1416T	p.I472I	AATTGGGATGTCG	.	93.0	6.0	128.0	0.0	.	200	.	G|1.000;A|0.000	Atlas-SNP
LMTK2	22853	hgsc.bcm.edu	hg19	7	97821009	97821009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LMTK2	NM_014916	exon11	c.G1232A	p.R411Q	ACCTGCGGCTGCA	.	86.0	23.0	127.0	0.0	.	228	.	.	Atlas-SNP
LRWD1	222229	hgsc.bcm.edu	hg19	7	102108549	102108549	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LRWD1	NM_152892	exon6	c.T719G	p.L240R	TCCCACTCAGCCT	.	86.0	21.0	111.0	0.0	.	41	.	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103179712	103179712	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	RELN	NM_173054	exon45	c.T6993C	p.D2331D	CCTACTATCAAGG	.	120.0	41.0	119.0	0.0	.	593	.	.	Atlas-SNP
PIK3CG	5294	hgsc.bcm.edu	hg19	7	106508977	106508977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PIK3CG	NM_002649	exon2	c.C971T	p.P324L	AGTGGCCACTGGT	.	156.0	44.0	167.0	0.0	.	279	.	.	Atlas-SNP
C7orf55-LUC7L2	100996928	hgsc.bcm.edu	hg19	7	139026139	139026139	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_001244584	exon1	c.C9T	p.A3A	GGCGGCCTTAGGG	.	54.0	20.0	61.0	0.0	.	.	.	.	Atlas-SNP
TAS2R41	259287	hgsc.bcm.edu	hg19	7	143175239	143175239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TAS2R41	NM_176883	exon1	c.C274G	p.L92V	CACTTCCTGAACT	.	126.0	19.0	138.0	0.0	.	43	.	.	Atlas-SNP
OR2A14	135941	hgsc.bcm.edu	hg19	7	143826880	143826880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OR2A14	NM_001001659	exon1	c.G675T	p.L225F	CATCTTGAGGATC	.	175.0	19.0	166.0	0.0	.	66	.	.	Atlas-SNP
VIPR2	7434	hgsc.bcm.edu	hg19	7	158851225	158851225	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	VIPR2	NM_003382	exon5	c.C402T	p.Y134Y	GACACTGTAGCCC	.	54.0	15.0	80.0	0.0	.	53	.	.	Atlas-SNP
ESCO2	157570	hgsc.bcm.edu	hg19	8	27645507	27645507	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ESCO2	NM_001017420	exon6	c.C1119G	p.D373E	AAAAGACCAGCTC	.	60.0	11.0	68.0	0.0	.	50	.	.	Atlas-SNP
ZMAT4	79698	hgsc.bcm.edu	hg19	8	40554844	40554844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	ZMAT4,rectum,carcinoma,0,1	ZMAT4	NM_024645	exon4	c.C269T	p.A90V	GAATCGGCCACCA	.	122.0	34.0	122.0	0.0	.	47	.	.	Atlas-SNP
CHRNA6	8973	hgsc.bcm.edu	hg19	8	42611206	42611206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CHRNA6	NM_004198	exon5	c.C1136A	p.A379D	CCTTTGGCAGGCC	.	124.0	42.0	116.0	0.0	.	60	.	.	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	hg19	8	72975703	72975703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TRPA1	NM_007332	exon5	c.G656A	p.R219K	CCAAACCTTAGTA	.	46.0	15.0	75.0	0.0	.	256	.	.	Atlas-SNP
KIAA1429	25962	hgsc.bcm.edu	hg19	8	95523460	95523460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KIAA1429	NM_015496	exon13	c.C3343A	p.L1115I	AAAGGAGTATGAG	.	80.0	4.0	129.0	0.0	.	176	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110539193	110539193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PKHD1L1	NM_177531	exon77	c.G12665T	p.R4222I	TTGGAAGAATGTG	.	109.0	14.0	132.0	0.0	.	522	.	.	Atlas-SNP
ZNF250	58500	hgsc.bcm.edu	hg19	8	146107239	146107239	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ZNF250	NM_021061	exon6	c.G1344A	p.E448E	GGGCTTCTCCCCA	.	168.0	54.0	196.0	0.0	.	37	.	.	Atlas-SNP
FRMPD1	22844	hgsc.bcm.edu	hg19	9	37746731	37746731	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FRMPD1	NM_014907	exon16	c.T4702G	p.L1568V	TTCTGTTTGACCC	.	116.0	18.0	131.0	0.0	.	237	.	.	Atlas-SNP
SLC28A3	64078	hgsc.bcm.edu	hg19	9	86905113	86905113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLC28A3	NM_001199633	exon11	c.T1105C	p.S369P	TGGTAGAGAACCC	.	125.0	25.0	152.0	0.0	.	72	.	.	Atlas-SNP
PAPPA	5069	hgsc.bcm.edu	hg19	9	118950193	118950193	+	Silent	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PAPPA	NM_002581	exon2	c.C1176G	p.S392S	CATCTCCTGGGAG	.	150.0	43.0	130.0	0.0	.	243	.	.	Atlas-SNP
HSPA14	51182	hgsc.bcm.edu	hg19	10	14890638	14890638	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	HSPA14,NS,carcinoma,0,1	HSPA14	NM_016299	exon4	c.C252T	p.I84I	ATACATCGCGGAA	.	45.0	12.0	76.0	0.0	.	42	.	.	Atlas-SNP
FAM171A1	221061	hgsc.bcm.edu	hg19	10	15326009	15326009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FAM171A1	NM_001010924	exon2	c.T193C	p.S65P	TGCCAGAGGCTAT	.	97.0	35.0	143.0	0.0	.	252	.	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	hg19	10	73437280	73437280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CDH23	NM_022124	exon15	c.C1582T	p.R528C	ATCCAGCGCTTCA	.	120.0	9.0	148.0	0.0	.	365	.	.	Atlas-SNP
TNKS2	80351	hgsc.bcm.edu	hg19	10	93558624	93558624	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TNKS2	NM_025235	exon1	c.C177T	p.S59S	GAAATCCACCCCG	.	62.0	28.0	69.0	0.0	.	103	.	.	Atlas-SNP
PPRC1	23082	hgsc.bcm.edu	hg19	10	103909723	103909723	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PPRC1	NM_015062	exon14	c.C4932T	p.S1644S	AAAGAGCAAATTT	.	68.0	26.0	146.0	0.0	.	151	.	.	Atlas-SNP
OR52D1	390066	hgsc.bcm.edu	hg19	11	5510297	5510297	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OR52D1	NM_001005163	exon1	c.A361T	p.M121L	CTTGCCATGGCCT	.	174.0	49.0	181.0	0.0	.	66	.	.	Atlas-SNP
ANO5	203859	hgsc.bcm.edu	hg19	11	22272304	22272304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ANO5	NM_213599	exon11	c.C1031A	p.P344H	GTGACCCTGAGAT	.	123.0	41.0	155.0	0.0	.	162	.	.	Atlas-SNP
FNBP4	23360	hgsc.bcm.edu	hg19	11	47772487	47772487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FNBP4	NM_015308	exon6	c.C887A	p.A296D	CGCTTGGCTATGA	.	80.0	4.0	89.0	0.0	.	99	.	.	Atlas-SNP
ARRB1	408	hgsc.bcm.edu	hg19	11	74980004	74980004	+	Splice_Site	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ARRB1	NM_004041	exon15	c.1023-1G>A	.	ACGTCGCTGAAAC	.	82.0	25.0	131.0	0.0	.	37	.	.	Atlas-SNP
SLC36A4	120103	hgsc.bcm.edu	hg19	11	92918881	92918881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLC36A4	NM_152313	exon2	c.A155G	p.Q52R	TCAAGTTGGTAAT	.	66.0	15.0	90.0	0.0	.	61	.	.	Atlas-SNP
CEP164	22897	hgsc.bcm.edu	hg19	11	117282631	117282631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CEP164	NM_014956	exon32	c.G4284T	p.R1428S	CCCCAGGTTGTAT	.	117.0	36.0	147.0	0.0	.	121	.	.	Atlas-SNP
CLEC1B	51266	hgsc.bcm.edu	hg19	12	10147806	10147806	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CLEC1B	NM_016509	exon5	c.G478T	p.G160X	ATAATCCGACCCA	.	60.0	20.0	65.0	0.0	.	39	.	.	Atlas-SNP
KRT85	3891	hgsc.bcm.edu	hg19	12	52760929	52760929	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KRT85	NM_002283	exon1	c.G261A	p.V87V	TCCGCACACGCCC	.	351.0	69.0	378.0	0.0	.	78	.	.	Atlas-SNP
TMEM5	10329	hgsc.bcm.edu	hg19	12	64174920	64174920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMEM5	NM_014254	exon2	c.T291A	p.D97E	AACAGATCTCAGT	.	55.0	13.0	107.0	0.0	.	35	.	.	Atlas-SNP
LRRIQ1	84125	hgsc.bcm.edu	hg19	12	85450892	85450892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LRRIQ1	NM_001079910	exon8	c.C2321A	p.P774Q	AATGCCCAGCCAA	.	40.0	11.0	88.0	0.0	.	512	.	.	Atlas-SNP
SALL2	6297	hgsc.bcm.edu	hg19	14	21992350	21992350	+	Silent	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SALL2	NM_005407	exon2	c.A1512T	p.G504G	AGGGAGTCCTGGA	.	63.0	21.0	66.0	0.0	.	95	.	.	Atlas-SNP
SOS2	6655	hgsc.bcm.edu	hg19	14	50655388	50655388	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SOS2	NM_006939	exon5	c.A541T	p.I181L	AACCTATGTCATC	.	57.0	13.0	71.0	0.0	.	195	.	.	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	hg19	14	65260468	65260468	+	Missense_Mutation	SNP	C	C	G	rs371216825	alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	SPTB_ENST00000542895,mucosal,malignant_melanoma,0,2	SPTB	NM_001024858	exon13	c.G1913C	p.R638P	CAGAGTCGTTTGG	.	81.0	28.0	101.0	1.0	.	378	.	.	Atlas-SNP
ATP10A	57194	hgsc.bcm.edu	hg19	15	25924784	25924784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ATP10A	NM_024490	exon21	c.G4204T	p.V1402F	TCAGGACAGCCTC	.	46.0	19.0	65.0	0.0	.	270	.	.	Atlas-SNP
ATP10A	57194	hgsc.bcm.edu	hg19	15	25924785	25924785	+	Silent	SNP	A	A	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ATP10A	NM_024490	exon21	c.T4203G	p.A1401A	CAGGACAGCCTCC	.	44.0	18.0	67.0	0.0	.	270	.	.	Atlas-SNP
C15orf26	161502	hgsc.bcm.edu	hg19	15	81426689	81426689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	C15orf26	NM_173528	exon1	c.G19T	p.G7C	GTGTATGGTCCGG	.	215.0	40.0	203.0	0.0	.	33	.	.	Atlas-SNP
NOD2	64127	hgsc.bcm.edu	hg19	16	50750836	50750836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NOD2	NM_022162	exon6	c.C2581T	p.H861Y	TGTGCACACTCCA	.	146.0	43.0	182.0	0.0	.	118	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88500768	88500768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ZNF469	NM_001127464	exon2	c.C6806T	p.A2269V	ATGAGGCACAGGC	.	88.0	10.0	91.0	0.0	.	121	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11597228	11597228	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DNAH9	NM_001372	exon21	c.T4658G	p.L1553R	AAGAGCTAGCTTA	.	55.0	32.0	108.0	0.0	.	695	.	.	Atlas-SNP
ZNF286A	57335	hgsc.bcm.edu	hg19	17	15619991	15619991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ZNF286A	NM_020652	exon6	c.G953T	p.R318I	ATCAGAGAATTCA	.	146.0	59.0	283.0	0.0	.	58	.	.	Atlas-SNP
KRTAP1-1	81851	hgsc.bcm.edu	hg19	17	39197352	39197352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KRTAP1-1	NM_030967	exon1	c.G298A	p.G100S	CAATGCCACCACC	.	154.0	39.0	172.0	0.0	.	23	.	.	Atlas-SNP
B4GALNT2	124872	hgsc.bcm.edu	hg19	17	47246920	47246920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	B4GALNT2	NM_153446	exon11	c.G1531T	p.G511W	CTCGTGGGGTCAT	.	69.0	26.0	53.0	0.0	.	67	.	.	Atlas-SNP
GZMM	3004	hgsc.bcm.edu	hg19	19	549779	549779	+	Silent	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GZMM	NM_005317	exon5	c.C762G	p.G254G	CACCGGCCGATCG	.	45.0	18.0	72.0	0.0	.	11	.	.	Atlas-SNP
ANKRD24	170961	hgsc.bcm.edu	hg19	19	4219685	4219685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ANKRD24	NM_133475	exon19	c.C3101T	p.A1034V	CCGAGGCGGAAAG	.	122.0	38.0	148.0	0.0	.	180	.	.	Atlas-SNP
SAFB2	9667	hgsc.bcm.edu	hg19	19	5621381	5621381	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SAFB2	NM_014649	exon2	c.T213C	p.P71P	TTCATCAGGATCT	.	95.0	5.0	113.0	0.0	.	90	.	.	Atlas-SNP
ZNF844	284391	hgsc.bcm.edu	hg19	19	12187443	12187443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	ZNF844,bladder,carcinoma,0,11	ZNF844	NM_001136501	exon4	c.C1508G	p.P503R	GAAACCCTATGAG	.	62.0	4.0	72.0	0.0	.	69	.	.	Atlas-SNP
ZNF844	284391	hgsc.bcm.edu	hg19	19	12187475	12187475	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	ZNF844,NS,carcinoma,0,6	ZNF844	NM_001136501	exon4	c.C1540G	p.H514D	CCTTCACATCTGC	.	68.0	3.0	83.0	0.0	.	69	.	.	Atlas-SNP
CLEC17A	388512	hgsc.bcm.edu	hg19	19	14720955	14720955	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CLEC17A	NM_001204118	exon14	c.C1084G	p.L362V	AATGATCTCTCTT	.	89.0	31.0	93.0	0.0	.	27	.	.	Atlas-SNP
NWD1	284434	hgsc.bcm.edu	hg19	19	16918939	16918939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NWD1	NM_001007525	exon18	c.A4279G	p.S1427G	GAGATGAGCTACA	.	94.0	29.0	103.0	0.0	.	303	.	.	Atlas-SNP
CEACAM3	1084	hgsc.bcm.edu	hg19	19	42300619	42300619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CEACAM3	NM_001815	exon1	c.C10A	p.P4T	GGGCCCCCCTCAG	.	73.0	18.0	97.0	0.0	.	37	.	.	Atlas-SNP
TMEM145	284339	hgsc.bcm.edu	hg19	19	42827878	42827878	+	Silent	SNP	G	G	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMEM145	NM_173633	exon14	c.G1338C	p.T446T	CGTGACGTTTATC	.	194.0	30.0	206.0	0.0	.	55	.	.	Atlas-SNP
PSG11	5680	hgsc.bcm.edu	hg19	19	43523032	43523032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PSG11	NM_002785	exon3	c.G599T	p.R200M	AGGGTCCTGTTGG	.	161.0	49.0	172.0	0.0	.	57	.	.	Atlas-SNP
GYS1	2997	hgsc.bcm.edu	hg19	19	49472819	49472819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GYS1	NM_002103	exon16	c.C1940T	p.S647L	GACAGCGAGGGCG	.	31.0	12.0	41.0	0.0	.	59	.	.	Atlas-SNP
LILRA4	23547	hgsc.bcm.edu	hg19	19	54850148	54850148	+	Missense_Mutation	SNP	C	C	A	rs181991337	bycluster;by1000genomes;alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LILRA4	NM_012276	exon2	c.G59T	p.R20L	TGCACCCGGGTCC	.	108.0	31.0	135.0	0.0	.	91	.	C|1.000;T|0.000	Atlas-SNP
NLRP9	338321	hgsc.bcm.edu	hg19	19	56241199	56241199	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NLRP9	NM_176820	exon3	c.C1992T	p.L664L	TTACATGAGTTTT	.	69.0	19.0	88.0	0.0	.	163	.	.	Atlas-SNP
NLRP13	126204	hgsc.bcm.edu	hg19	19	56416366	56416366	+	Missense_Mutation	SNP	C	C	A	rs201367180	alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NLRP13	NM_176810	exon8	c.G2560T	p.G854C	TTATGCCATCATC	.	154.0	38.0	187.0	0.0	.	220	.	C|0.999;T|0.001	Atlas-SNP
NCOA6	23054	hgsc.bcm.edu	hg19	20	33345295	33345295	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NCOA6	NM_014071	exon7	c.A1256T	p.Q419L	GGCTGCTGCAAGG	.	105.0	22.0	128.0	0.0	.	219	.	.	Atlas-SNP
SNAI1	6615	hgsc.bcm.edu	hg19	20	48600475	48600475	+	Missense_Mutation	SNP	C	C	G	rs34261470	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SNAI1	NM_005985	exon2	c.C197G	p.A66G	TCCTGGCGCCCCA	.	31.0	8.0	21.0	0.0	.	28	.	C|0.979;T|0.021	Atlas-SNP
BHLHE23	128408	hgsc.bcm.edu	hg19	20	61637464	61637464	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	BHLHE23	NM_080606	exon1	c.C615T	p.D205D	GCACTTGTCAGGG	.	23.0	9.0	20.0	0.0	.	3	.	.	Atlas-SNP
BPIFC	254240	hgsc.bcm.edu	hg19	22	32829728	32829728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_174932	exon9	c.G956A	p.G319D	CCAAGGCCTTGAG	.	115.0	33.0	159.0	0.0	.	.	.	.	Atlas-SNP
CACNG2	10369	hgsc.bcm.edu	hg19	22	36960750	36960750	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CACNG2	NM_006078	exon4	c.A620T	p.Q207L	CGCAGCTGTTTGT	.	65.0	5.0	105.0	0.0	.	43	.	.	Atlas-SNP
CACNG2	10369	hgsc.bcm.edu	hg19	22	36960792	36960792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CACNG2	NM_006078	exon4	c.T578C	p.V193A	ACCCCGACCATCT	.	80.0	7.0	123.0	0.0	.	43	.	.	Atlas-SNP
CACNG2	10369	hgsc.bcm.edu	hg19	22	36983573	36983573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CACNG2	NM_006078	exon2	c.G234T	p.K78N	AATTTGCTTGCAC	.	184.0	39.0	154.0	0.0	.	43	.	.	Atlas-SNP
CACNG2	10369	hgsc.bcm.edu	hg19	22	36983574	36983574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CACNG2	NM_006078	exon2	c.A233T	p.K78M	ATTTGCTTGCACA	.	183.0	39.0	156.0	0.0	.	43	.	.	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	hg19	X	3238423	3238423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MXRA5	NM_015419	exon5	c.C5303G	p.S1768C	TTGTAGGAACCTG	.	112.0	33.0	154.0	0.0	.	815	.	.	Atlas-SNP
PTCHD1	139411	hgsc.bcm.edu	hg19	X	23411941	23411941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PTCHD1	NM_173495	exon3	c.C2306T	p.A769V	ATTGTGCTCCAAT	.	107.0	11.0	126.0	0.0	.	213	.	.	Atlas-SNP
FAM47A	158724	hgsc.bcm.edu	hg19	X	34149907	34149907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FAM47A	NM_203408	exon1	c.G489T	p.W163C	ACAAGCCCAAGCG	.	152.0	12.0	224.0	0.0	.	249	.	.	Atlas-SNP
GPR34	2857	hgsc.bcm.edu	hg19	X	41555817	41555817	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GPR34	NM_001097579	exon3	c.A931T	p.I311F	AATGAGATCATGC	.	103.0	36.0	143.0	0.0	.	42	.	.	Atlas-SNP
AIFM1	9131	hgsc.bcm.edu	hg19	X	129264035	129264035	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	AIFM1	NM_004208	exon15	c.C1680T	p.Y560Y	TTTGCCGTAGTCC	.	251.0	33.0	229.0	0.0	.	75	.	.	Atlas-SNP
FAM122B	159090	hgsc.bcm.edu	hg19	X	133927919	133927919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FAM122B	NM_001170756	exon2	c.C103T	p.L35F	GTGAAAGGTCACT	.	47.0	7.0	43.0	0.0	.	20	.	.	Atlas-SNP
MCF2	4168	hgsc.bcm.edu	hg19	X	138728988	138728988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MCF2	NM_001171876	exon3	c.G100T	p.V34L	CTATTACTTCCTC	.	596.0	107.0	552.0	0.0	.	432	.	.	Atlas-SNP
MECP2	4204	hgsc.bcm.edu	hg19	X	153296110	153296110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MECP2	NM_001110792	exon3	c.C1205T	p.P402L	TCAGGTGGAGGTG	.	10.0	4.0	7.0	0.0	.	41	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15200	15200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	ENST00000361789	exon1	c.G454A	p.A152T	CTATCCGCCATCC	.	10.0	10.0	14.0	0.0	.	.	.	.	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	hg19	19	42858165	42858165	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MEGF8	NM_001271938	exon22	c.3999delC	p.S1333fs	.	.	59.0	10.0	44.0	0.0	.	358	.	.	Atlas-INDEL
MLL	4297	hgsc.bcm.edu	hg19	11	118362558	118362558	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MLL	NM_001197104	exon15	c.4918delG	p.E1640fs	.	.	76.0	12.0	98.0	0.0	.	548	.	.	Atlas-INDEL
PODNL1	79883	hgsc.bcm.edu	hg19	19	14043535	14043538	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	TGTT	TGTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	PODNL1,NS,carcinoma,0,1	PODNL1	NM_024825	exon8	c.1520_1523del	p.507_508del	.	.	127.0	25.0	132.0	0.0	.	27	.	.	Atlas-Indel,Pindel
GPRASP2	114928	hgsc.bcm.edu	hg19	X	101970175	101970185	+	Frame_Shift_Del	DEL	CCAGGCATGGG	CCAGGCATGGG	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	CCAGGCATGGG	CCAGGCATGGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GPRASP2	NM_001184874	exon5	c.377_387del	p.126_129del	.	.	122.0	29.0	143.0	0.0	.	89	.	.	Atlas-Indel,Pindel
OSCAR	126014	hgsc.bcm.edu	hg19	19	54598520	54598530	+	Frame_Shift_Del	DEL	CTGCGCCAGTC	CTGCGCCAGTC	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	CTGCGCCAGTC	CTGCGCCAGTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OSCAR	NM_130771	exon6	c.761_771del	p.254_257del	.	.	239.0	34.0	341.0	0.0	.	22	.	.	Atlas-Indel,Pindel
DCAF6	55827	hgsc.bcm.edu	hg19	1	167962525	167962525	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DCAF6	NM_001198956	exon7	c.749delA	p.N250fs	.	.	153.0	37.0	153.0	0.0	.	99	.	.	Atlas-Indel,Pindel
RYR1	6261	hgsc.bcm.edu	hg19	19	38986916	38986965	+	Frame_Shift_Del	DEL	CACGAGACGGTCATGGAGGTCATGGTCAACGTCCTCGGGGGCGGCGAGTC	CACGAGACGGTCATGGAGGTCATGGTCAACGTCCTCGGGGGCGGCGAGTC	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	CACGAGACGGTCATGGAGGTCATGGTCAACGTCCTCGGGGGCGGCGAGTC	CACGAGACGGTCATGGAGGTCATGGTCAACGTCCTCGGGGGCGGCGAGTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	RYR1	NM_001042723	exon40	c.6609_6658del	p.2203_2220del	.	.	98.0	20.0	89.0	0.0	.	708	.	.	Pindel
KCNIP1	30820	hgsc.bcm.edu	hg19	5	170145856	170145856	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KCNIP1	NM_001034837	exon3	c.188delA	p.E63fs	.	.	79.0	20.0	91.0	0.0	.	66	.	.	Pindel
JMY	133746	hgsc.bcm.edu	hg19	5	78533507	78533522	+	Splice_Site	DEL	TGAGTGAGTGAGCTCC	TGAGTGAGTGAGCTCC	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	TGAGTGAGTGAGCTCC	TGAGTGAGTGAGCTCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	JMY	.	.	.	.	.	.	98.0	11.0	143.0	0.0	.	82	.	.	Pindel