Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ZBTB48	3104	hgsc.bcm.edu	hg19	1	6642352	6642352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZBTB48	NM_005341	exon3	c.C925T	p.H309Y	AAAGTCCACAACA	.	63.0	27.0	84.0	0.0	.	33	.	.	Atlas-SNP
KIF1B	23095	hgsc.bcm.edu	hg19	1	10408742	10408742	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIF1B	NM_015074	exon35	c.T3762A	p.H1254Q	TATCCATGAGAAG	.	79.0	25.0	78.0	0.0	.	242	.	.	Atlas-SNP
CELA2A	63036	hgsc.bcm.edu	hg19	1	15788106	15788106	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CELA2A	NM_033440	exon3	c.G180T	p.G60G	CGGAGGGTCCCTG	.	122.0	39.0	142.0	0.0	.	32	.	.	Atlas-SNP
AGO4	192670	hgsc.bcm.edu	hg19	1	36292423	36292423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_017629	exon7	c.G835T	p.A279S	CGGCCAGCCAGTC	.	47.0	25.0	59.0	0.0	.	.	.	.	Atlas-SNP
HPDL	84842	hgsc.bcm.edu	hg19	1	45793225	45793225	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HPDL	NM_032756	exon1	c.C405T	p.R135R	GGAGCGCGCTGGC	.	104.0	40.0	80.0	0.0	.	14	.	.	Atlas-SNP
NPR1	4881	hgsc.bcm.edu	hg19	1	153653014	153653014	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NPR1	NM_000906	exon2	c.C759T	p.T253T	CAGAACCCTCATG	.	97.0	82.0	88.0	0.0	.	104	.	.	Atlas-SNP
OR6K2	81448	hgsc.bcm.edu	hg19	1	158669510	158669510	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR6K2	NM_001005279	exon1	c.A933T	p.I311I	AAAAAATATCTTA	.	117.0	43.0	130.0	0.0	.	104	.	.	Atlas-SNP
OR6K2	81448	hgsc.bcm.edu	hg19	1	158669512	158669512	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR6K2	NM_001005279	exon1	c.A931T	p.I311L	AAAATATCTTAGC	.	115.0	41.0	130.0	0.0	.	104	.	.	Atlas-SNP
MNDA	4332	hgsc.bcm.edu	hg19	1	158817562	158817562	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MNDA	NM_002432	exon6	c.T1032C	p.N344N	GGATAATACAGGA	.	42.0	36.0	58.0	0.0	.	147	.	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	hg19	1	167096118	167096118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	DUSP27,NS,carcinoma,0,2	DUSP27	NM_001080426	exon5	c.G1750A	p.V584I	TCCGACGTCAGCC	.	46.0	31.0	37.0	0.0	.	235	.	.	Atlas-SNP
RCSD1	92241	hgsc.bcm.edu	hg19	1	167666934	167666934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RCSD1	NM_052862	exon6	c.G1073T	p.G358V	TGAAGGGCGGAGA	.	29.0	27.0	37.0	0.0	.	64	.	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	hg19	1	177030375	177030375	+	Missense_Mutation	SNP	G	G	T	rs138326291	bycluster;alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ASTN1	NM_004319	exon2	c.C310A	p.P104T	CCAAAGGGATATC	.	63.0	50.0	79.0	0.0	.	314	.	G|1.000;C|0.000	Atlas-SNP
SLC45A3	85414	hgsc.bcm.edu	hg19	1	205628667	205628667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC45A3	NM_033102	exon5	c.C1357A	p.L453M	GGAGCAGGCCACT	.	76.0	60.0	73.0	0.0	.	54	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245530263	245530263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIF26B	NM_018012	exon3	c.C593A	p.A198D	AGGAGGCCATCCA	.	67.0	29.0	69.0	0.0	.	343	.	.	Atlas-SNP
NLRP3	114548	hgsc.bcm.edu	hg19	1	247588229	247588229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NLRP3	NM_183395	exon3	c.A1484G	p.Q495R	GACTGCAGAAGGC	.	40.0	28.0	21.0	0.0	.	286	.	.	Atlas-SNP
OR14A16	284532	hgsc.bcm.edu	hg19	1	247978654	247978654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR14A16	NM_001001966	exon1	c.C378A	p.H126Q	CAGAGGGTGACAT	.	60.0	46.0	88.0	0.0	.	90	.	.	Atlas-SNP
OR2T8	343172	hgsc.bcm.edu	hg19	1	248085221	248085221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	OR2T8,NS,carcinoma,0,1	OR2T8	NM_001005522	exon1	c.G902T	p.R301M	TGACAAGGTGTAT	.	70.0	52.0	86.0	0.0	.	67	.	.	Atlas-SNP
MATN3	4148	hgsc.bcm.edu	hg19	2	20202976	20202976	+	Missense_Mutation	SNP	G	G	A	rs376404727		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MATN3	NM_002381	exon3	c.C862T	p.H288Y	CACAGTGGTGCTT	.	89.0	39.0	68.0	0.0	.	28	.	.	Atlas-SNP
C2orf71	388939	hgsc.bcm.edu	hg19	2	29297116	29297116	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	C2orf71	NM_001029883	exon1	c.A12G	p.T4T	TGAAGGTGTACAC	.	47.0	17.0	52.0	0.0	.	146	.	.	Atlas-SNP
LRPPRC	10128	hgsc.bcm.edu	hg19	2	44162019	44162019	+	Splice_Site	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LRPPRC	NM_133259	exon25	c.2505-2A>T	.	CGCCCCTTAGAAA	.	108.0	44.0	144.0	0.0	.	105	.	.	Atlas-SNP
PRKCE	5581	hgsc.bcm.edu	hg19	2	45879477	45879477	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRKCE	NM_005400	exon1	c.G238T	p.E80X	AAGATCGAGCTGG	.	30.0	15.0	27.0	0.0	.	58	.	.	Atlas-SNP
ERCC3	2071	hgsc.bcm.edu	hg19	2	128038082	128038082	+	Nonsense_Mutation	SNP	C	C	A	rs367552856	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ERCC3	NM_000122	exon9	c.G1468T	p.E490X	TGGCTTCGTAGAG	.	114.0	40.0	107.0	0.0	.	73	.	.	Atlas-SNP
ACVR2A	92	hgsc.bcm.edu	hg19	2	148674983	148674983	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACVR2A	NM_001616	exon6	c.A804G	p.A268A	CACAGCATTTCAT	.	110.0	29.0	127.0	0.0	.	125	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179472259	179472259	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TTN	NM_001267550	exon277	c.T53156A	p.V17719E	TCTATTACAACAC	.	165.0	57.0	152.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179501228	179501228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TTN	NM_001267550	exon225	c.G41226T	p.K13742N	GTGCAGCTTTCTG	.	148.0	54.0	146.0	0.0	.	18412	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220348586	220348586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPEG	NM_005876	exon30	c.G6401T	p.G2134V	CCCAGGGTGAGGC	.	11.0	5.0	13.0	0.0	.	272	.	.	Atlas-SNP
SLC4A3	6508	hgsc.bcm.edu	hg19	2	220500505	220500505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	SLC4A3,NS,carcinoma,0,1	SLC4A3	NM_201574	exon14	c.C2164T	p.H722Y	TACCCGCACTACC	.	66.0	31.0	63.0	0.0	.	144	.	.	Atlas-SNP
AGAP1	116987	hgsc.bcm.edu	hg19	2	237032735	237032735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	AGAP1	NM_001037131	exon18	c.A2543G	p.N848S	GGAACAACAGCAG	.	124.0	26.0	80.0	0.0	.	95	.	.	Atlas-SNP
HDAC4	9759	hgsc.bcm.edu	hg19	2	240056268	240056268	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HDAC4	NM_006037	exon10	c.C1050T	p.S350S	GGGCAAGGATGGC	.	71.0	16.0	52.0	0.0	.	127	.	.	Atlas-SNP
PDCD1	5133	hgsc.bcm.edu	hg19	2	242793440	242793440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDCD1	NM_005018	exon5	c.C637T	p.P213S	CTGAGGGGTCCTC	.	44.0	20.0	46.0	0.0	.	31	.	.	Atlas-SNP
XIRP1	165904	hgsc.bcm.edu	hg19	3	39228092	39228092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP1	NM_001198621	exon2	c.C2845T	p.P949S	CAGCCGGGGGCTC	.	53.0	38.0	63.0	0.0	.	173	.	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	hg19	3	52553354	52553354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	STAB1	NM_015136	exon49	c.C5109A	p.F1703L	GCACTTCATTGAC	.	74.0	50.0	99.0	0.0	.	178	.	.	Atlas-SNP
GPR15	2838	hgsc.bcm.edu	hg19	3	98251158	98251158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	GPR15,NS,carcinoma,+1,1	GPR15	NM_005290	exon1	c.C281A	p.A94E	AAGAAGCATCTCT	.	85.0	32.0	115.0	0.0	.	55	.	.	Atlas-SNP
PODXL2	50512	hgsc.bcm.edu	hg19	3	127379537	127379537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PODXL2	NM_015720	exon3	c.T666A	p.H222Q	CAGGCATGAAGAC	.	85.0	26.0	67.0	0.0	.	53	.	.	Atlas-SNP
MFSD1	64747	hgsc.bcm.edu	hg19	3	158519925	158519925	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MFSD1	NM_022736	exon1	c.C131G	p.P44R	CCTCTCCGTCTCC	.	74.0	25.0	59.0	0.0	.	88	.	.	Atlas-SNP
SLITRK3	22865	hgsc.bcm.edu	hg19	3	164908256	164908256	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLITRK3	NM_014926	exon2	c.C363T	p.F121F	ACCATTGAAAGCT	.	80.0	34.0	80.0	0.0	.	263	.	.	Atlas-SNP
TNK2	10188	hgsc.bcm.edu	hg19	3	195610026	195610026	+	Splice_Site	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TNK2	NM_005781	exon6	c.609+2T>A	.	GTACTCACCATCT	.	12.0	6.0	23.0	0.0	.	246	.	.	Atlas-SNP
APBB2	323	hgsc.bcm.edu	hg19	4	40892391	40892391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	APBB2	NM_004307	exon12	c.G1519A	p.D507N	CATTGTCGCGGCC	.	57.0	24.0	64.0	0.0	.	61	.	.	Atlas-SNP
SHISA3	152573	hgsc.bcm.edu	hg19	4	42400220	42400220	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SHISA3	NM_001080505	exon1	c.C147T	p.D49D	CTTCGACACGCTG	.	75.0	21.0	53.0	0.0	.	27	.	.	Atlas-SNP
ADAD1	132612	hgsc.bcm.edu	hg19	4	123302161	123302161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ADAD1	NM_139243	exon4	c.C187A	p.P63T	CCAGAGCCGTTGC	.	357.0	96.0	289.0	0.0	.	94	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126367528	126367528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FAT4	NM_024582	exon8	c.G7274A	p.R2425K	TAGATAGGGAAAC	.	69.0	30.0	92.0	0.0	.	1752	.	.	Atlas-SNP
TKTL2	84076	hgsc.bcm.edu	hg19	4	164394657	164394657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TKTL2	NM_032136	exon1	c.G230A	p.G77E	GCATGTCCCCTGG	.	129.0	47.0	148.0	0.0	.	130	.	.	Atlas-SNP
PALLD	23022	hgsc.bcm.edu	hg19	4	169825044	169825044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PALLD	NM_001166108	exon15	c.C2609A	p.A870D	TTATGGCTGCAAA	.	81.0	38.0	88.0	0.0	.	179	.	.	Atlas-SNP
AADAT	51166	hgsc.bcm.edu	hg19	4	170991792	170991792	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	AADAT	NM_182662	exon7	c.A666G	p.K222K	ATCATATTTTCTT	.	157.0	69.0	173.0	0.0	.	28	.	.	Atlas-SNP
SLC6A3	6531	hgsc.bcm.edu	hg19	5	1422086	1422086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	SLC6A3,right_upper_lobe,carcinoma,0,1	SLC6A3	NM_001044	exon5	c.C697A	p.L233M	GCCCCAGGTCGTC	.	40.0	15.0	38.0	0.0	.	102	.	.	Atlas-SNP
CAST	831	hgsc.bcm.edu	hg19	5	96083056	96083056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CAST	NM_001042440	exon16	c.A1169G	p.D390G	ATAAAGATGGAAA	.	279.0	77.0	319.0	0.0	.	58	.	.	Atlas-SNP
FTMT	94033	hgsc.bcm.edu	hg19	5	121188325	121188325	+	Missense_Mutation	SNP	G	G	A	rs149286328	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FTMT	NM_177478	exon1	c.G667A	p.A223T	CCGGATGCTGGCC	.	76.0	24.0	57.0	0.0	.	71	.	G|0.999;T|0.001	Atlas-SNP
FNIP1	96459	hgsc.bcm.edu	hg19	5	131007517	131007517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FNIP1	NM_133372	exon14	c.T2620A	p.C874S	TTGTACACAATAT	.	135.0	58.0	110.0	0.0	.	104	.	.	Atlas-SNP
PCDHA8	56140	hgsc.bcm.edu	hg19	5	140222105	140222105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCDHA8	NM_031856	exon1	c.C1199T	p.T400I	TGTCCACCTTCAA	.	184.0	68.0	192.0	0.0	.	366	.	.	Atlas-SNP
PCDHB8	56128	hgsc.bcm.edu	hg19	5	140558291	140558291	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCDHB8	NM_019120	exon1	c.A676T	p.T226S	TCTGGCACTGCTC	.	301.0	77.0	340.0	0.0	.	199	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169111319	169111319	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DOCK2	NM_004946	exon8	c.G726C	p.M242I	CTTCATGTCTCTC	.	147.0	44.0	96.0	0.0	.	389	.	.	Atlas-SNP
EIF4E1B	253314	hgsc.bcm.edu	hg19	5	176070686	176070686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EIF4E1B	NM_001099408	exon5	c.G247T	p.D83Y	TGGCAGGACAACC	.	90.0	25.0	75.0	0.0	.	24	.	.	Atlas-SNP
DBN1	1627	hgsc.bcm.edu	hg19	5	176893949	176893949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DBN1	NM_080881	exon8	c.C676T	p.R226C	GGTAGCGCCGCTC	.	31.0	14.0	39.0	0.0	.	122	.	.	Atlas-SNP
OR5V1	81696	hgsc.bcm.edu	hg19	6	29323327	29323327	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	OR5V1,NS,carcinoma,0,1	OR5V1	NM_030876	exon1	c.C646G	p.L216V	AGGAAAGTACGAT	.	34.0	10.0	38.0	0.0	.	63	.	.	Atlas-SNP
UBD	10537	hgsc.bcm.edu	hg19	6	29524084	29524084	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	UBD	NM_006398	exon2	c.C71G	p.A24G	GGGTTGGCATCAA	.	69.0	23.0	86.0	0.0	.	13	.	.	Atlas-SNP
HLA-DMA	3108	hgsc.bcm.edu	hg19	6	32918508	32918508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HLA-DMA	NM_006120	exon2	c.G161A	p.S54N	CTGGGACTCCCAT	.	46.0	13.0	45.0	0.0	.	20	.	.	Atlas-SNP
DEF6	50619	hgsc.bcm.edu	hg19	6	35285774	35285774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DEF6	NM_022047	exon6	c.C914T	p.A305V	GGACAGCTGGTGA	.	56.0	20.0	72.0	0.0	.	36	.	.	Atlas-SNP
LRFN2	57497	hgsc.bcm.edu	hg19	6	40360374	40360374	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LRFN2	NM_020737	exon3	c.T1678A	p.C560S	GGTTGCAGACCTT	.	51.0	21.0	52.0	0.0	.	133	.	.	Atlas-SNP
TFEB	7942	hgsc.bcm.edu	hg19	6	41658400	41658400	+	Splice_Site	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TFEB	NM_007162	exon5	c.468+1G>A	.	CACTCACCTCCCT	.	19.0	8.0	27.0	0.0	.	37	.	.	Atlas-SNP
TCTE1	202500	hgsc.bcm.edu	hg19	6	44254246	44254246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TCTE1	NM_182539	exon3	c.C301G	p.L101V	CCGGGAGCATCTG	.	73.0	17.0	87.0	0.0	.	77	.	.	Atlas-SNP
DEFB114	245928	hgsc.bcm.edu	hg19	6	49928115	49928115	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DEFB114	NM_001037499	exon2	c.G100C	p.G34R	AACGACCGTAACG	.	121.0	54.0	126.0	0.0	.	12	.	.	Atlas-SNP
CCZ1	51622	hgsc.bcm.edu	hg19	7	5944735	5944735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CCZ1	NM_015622	exon7	c.C533T	p.T178M	TGCAAACGCTACA	.	638.0	208.0	737.0	0.0	.	21	.	.	Atlas-SNP
DAGLB	221955	hgsc.bcm.edu	hg19	7	6474591	6474591	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DAGLB	NM_139179	exon4	c.G480A	p.G160G	CATTTTCCCCCCA	.	72.0	28.0	61.0	0.0	.	74	.	.	Atlas-SNP
ZNF107	51427	hgsc.bcm.edu	hg19	7	64166839	64166839	+	Nonsense_Mutation	SNP	G	G	T	rs201422104	bycluster;alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF107	NM_016220	exon7	c.G157T	p.E53X	GTGGATGAGTGTA	.	208.0	67.0	176.0	0.0	.	107	.	.	Atlas-SNP
CCDC146	57639	hgsc.bcm.edu	hg19	7	76889445	76889445	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CCDC146	NM_020879	exon8	c.A878T	p.E293V	TAAAGGAAGTTGA	.	178.0	31.0	146.0	0.0	.	87	.	.	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	hg19	7	83014738	83014738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SEMA3E	NM_012431	exon16	c.G1747T	p.D583Y	TCTTATCCAAAGC	.	255.0	63.0	213.0	0.0	.	125	.	.	Atlas-SNP
ANKIB1	54467	hgsc.bcm.edu	hg19	7	92015870	92015870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ANKIB1	NM_019004	exon12	c.T1665G	p.H555Q	AAAACATAGTTCG	.	278.0	51.0	196.0	0.0	.	92	.	.	Atlas-SNP
CYP3A43	64816	hgsc.bcm.edu	hg19	7	99434099	99434099	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CYP3A43	NM_057096	exon2	c.T95G	p.L32R	ATAAACTTTTTAA	.	262.0	124.0	150.0	0.0	.	52	.	.	Atlas-SNP
CYP3A43	64816	hgsc.bcm.edu	hg19	7	99447235	99447235	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CYP3A43	NM_057096	exon7	c.C588T	p.L196L	TTCTCTCAACAAT	.	246.0	145.0	173.0	0.0	.	52	.	.	Atlas-SNP
ZCWPW1	55063	hgsc.bcm.edu	hg19	7	99999574	99999574	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZCWPW1	NM_017984	exon17	c.C1562G	p.A521G	GGAGGAGCTGTGG	.	268.0	17.0	142.0	0.0	.	41	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100682876	100682876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MUC17	NM_001040105	exon3	c.G8179A	p.A2727T	ACTTCTGCTGAAG	.	78.0	9.0	55.0	0.0	.	804	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100682890	100682890	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MUC17	NM_001040105	exon3	c.T8193C	p.S2731S	CAGTTCTTCTCCT	.	75.0	5.0	58.0	0.0	.	804	.	.	Atlas-SNP
RAB19	401409	hgsc.bcm.edu	hg19	7	140111745	140111745	+	Missense_Mutation	SNP	C	C	G	rs375880877	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RAB19	NM_001008749	exon3	c.C273G	p.H91Q	TGCCCACGCAGCC	.	46.0	21.0	39.0	0.0	.	21	.	.	Atlas-SNP
GIMAP4	55303	hgsc.bcm.edu	hg19	7	150269571	150269571	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GIMAP4	NM_018326	exon3	c.T413A	p.L138Q	AGATCCTGAAAAT	.	66.0	18.0	91.0	0.0	.	61	.	.	Atlas-SNP
BHLHE22	27319	hgsc.bcm.edu	hg19	8	65494023	65494023	+	Missense_Mutation	SNP	A	A	G	rs62519837	bycluster	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	BHLHE22,extremity,malignant_melanoma,0,1	BHLHE22	NM_152414	exon1	c.A676G	p.S226G	GGCGGCAGCAGCA	.	9.0	3.0	2.0	1.0	.	21	.	G|1.000;|0.000	Atlas-SNP
EXT1	2131	hgsc.bcm.edu	hg19	8	118817113	118817113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EXT1	NM_000127	exon10	c.T1903G	p.S635A	AATGGGAGTATAG	.	177.0	74.0	101.0	0.0	.	98	.	.	Atlas-SNP
TNFRSF11B	4982	hgsc.bcm.edu	hg19	8	119936632	119936632	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TNFRSF11B	NM_002546	exon5	c.T1187G	p.V396G	ATTTTTACTGATT	.	151.0	55.0	111.0	0.0	.	87	.	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	133935646	133935646	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TG	NM_003235	exon22	c.C4592G	p.A1531G	ATCGAGCCAGCCA	.	101.0	51.0	65.0	0.0	.	416	.	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139620230	139620230	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	COL22A1,NS,carcinoma,0,1	COL22A1	NM_152888	exon57	c.C3981A	p.G1327G	ATTCTTGCCCTGG	.	68.0	29.0	54.0	1.0	.	390	.	.	Atlas-SNP
LINGO2	158038	hgsc.bcm.edu	hg19	9	27949554	27949554	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LINGO2	NM_001258282	exon7	c.C1116A	p.T372T	CTGCAGGGTGGGC	.	33.0	22.0	51.0	0.0	.	244	.	.	Atlas-SNP
PIGO	84720	hgsc.bcm.edu	hg19	9	35094331	35094331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PIGO	NM_001201484	exon4	c.T537G	p.D179E	GGTATCATCTCCC	.	43.0	23.0	42.0	0.0	.	86	.	.	Atlas-SNP
ANKS6	203286	hgsc.bcm.edu	hg19	9	101498813	101498813	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ANKS6	NM_173551	exon15	c.C2604G	p.S868R	ACAGGGGCTGTTG	.	38.0	13.0	38.0	0.0	.	59	.	.	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	hg19	9	131369944	131369944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPTAN1	NM_003127	exon32	c.G4108T	p.D1370Y	GCCAAGGATGTCA	.	56.0	15.0	98.0	0.0	.	266	.	.	Atlas-SNP
ITIH2	3698	hgsc.bcm.edu	hg19	10	7786905	7786905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ITIH2	NM_002216	exon19	c.C2560T	p.P854S	TTCTCACCTAAAG	.	146.0	13.0	98.0	0.0	.	144	.	.	Atlas-SNP
ITGA8	8516	hgsc.bcm.edu	hg19	10	15688879	15688879	+	Silent	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ITGA8	NM_003638	exon12	c.A1173C	p.A391A	TAAGTGTGCCATA	.	79.0	26.0	80.0	0.0	.	230	.	.	Atlas-SNP
WDR96	80217	hgsc.bcm.edu	hg19	10	105944803	105944803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	WDR96	NM_025145	exon16	c.T2112A	p.D704E	GCCATCATCTCTC	.	65.0	12.0	83.0	0.0	.	183	.	.	Atlas-SNP
PNLIPRP1	5407	hgsc.bcm.edu	hg19	10	118360697	118360697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PNLIPRP1	NM_006229	exon10	c.G1047T	p.E349D	AGGAGAGGCTAGC	.	57.0	22.0	55.0	0.0	.	82	.	.	Atlas-SNP
FGFR2	2263	hgsc.bcm.edu	hg19	10	123274695	123274695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FGFR2	NM_022970	exon9	c.A1226G	p.D409G	CTGAAGTCTGGCT	.	158.0	31.0	172.0	0.0	.	758	.	.	Atlas-SNP
OR51M1	390059	hgsc.bcm.edu	hg19	11	5410935	5410935	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR51M1	NM_001004756	exon1	c.A307T	p.S103C	TCCCATAGTATCT	.	66.0	30.0	104.0	0.0	.	60	.	.	Atlas-SNP
CNGA4	1262	hgsc.bcm.edu	hg19	11	6261787	6261787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CNGA4	NM_001037329	exon4	c.G763A	p.V255I	CTGGCCGTCATGG	.	76.0	24.0	60.0	0.0	.	96	.	.	Atlas-SNP
USH1C	10083	hgsc.bcm.edu	hg19	11	17544442	17544442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	USH1C	NM_005709	exon12	c.G908T	p.R303L	GCCAGCCGCTCCC	.	69.0	28.0	61.0	0.0	.	157	.	.	Atlas-SNP
WT1	7490	hgsc.bcm.edu	hg19	11	32414292	32414292	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	WT1	NM_024424	exon8	c.C1259G	p.P420R	TGGTATGGTTTCT	.	81.0	28.0	90.0	0.0	.	744	.	.	Atlas-SNP
OR5T2	219464	hgsc.bcm.edu	hg19	11	56000068	56000068	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR5T2	NM_001004746	exon1	c.T594C	p.H198H	CACTGTATGTATA	.	133.0	58.0	139.0	0.0	.	107	.	.	Atlas-SNP
MS4A2	2206	hgsc.bcm.edu	hg19	11	59861471	59861471	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MS4A2	NM_000139	exon6	c.T572A	p.L191Q	CCATTCTGGGACT	.	91.0	39.0	112.0	0.0	.	41	.	.	Atlas-SNP
MS4A2	2206	hgsc.bcm.edu	hg19	11	59861472	59861472	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MS4A2	NM_000139	exon6	c.G573T	p.L191L	CATTCTGGGACTT	.	90.0	39.0	113.0	0.0	.	41	.	.	Atlas-SNP
MS4A2	2206	hgsc.bcm.edu	hg19	11	59861474	59861474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MS4A2	NM_000139	exon6	c.G575T	p.G192V	TTCTGGGACTTGG	.	89.0	38.0	113.0	0.0	.	41	.	.	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	hg19	11	76925722	76925722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MYO7A	NM_000260	exon49	c.G6629T	p.G2210V	AGCGGGGCTCCAG	.	60.0	26.0	66.0	0.0	.	164	.	.	Atlas-SNP
PCF11	51585	hgsc.bcm.edu	hg19	11	82895887	82895887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCF11	NM_015885	exon16	c.C4619T	p.A1540V	GCATAGCAACACC	.	70.0	24.0	65.0	0.0	.	220	.	.	Atlas-SNP
B3GAT1	27087	hgsc.bcm.edu	hg19	11	134252717	134252717	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	B3GAT1	NM_054025	exon4	c.A805C	p.S269R	CCTGGCTTCGCTG	.	76.0	34.0	76.0	0.0	.	49	.	.	Atlas-SNP
SLC6A13	6540	hgsc.bcm.edu	hg19	12	335639	335639	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC6A13	NM_016615	exon9	c.T977G	p.F326C	GCCACAAAGCTGG	.	31.0	11.0	47.0	0.0	.	62	.	.	Atlas-SNP
EMP1	2012	hgsc.bcm.edu	hg19	12	13366481	13366481	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EMP1	NM_001423	exon3	c.C147A	p.C49X	TAGCTGCAGTGAC	.	254.0	69.0	294.0	0.0	.	14	.	.	Atlas-SNP
IRAK4	51135	hgsc.bcm.edu	hg19	12	44165082	44165082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	IRAK4	NM_016123	exon3	c.G221T	p.W74L	TTGACTGGGGCAC	.	114.0	47.0	143.0	0.0	.	77	.	.	Atlas-SNP
IRAK4	51135	hgsc.bcm.edu	hg19	12	44165083	44165083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	IRAK4	NM_016123	exon3	c.G222T	p.W74C	TGACTGGGGCACC	.	115.0	47.0	142.0	0.0	.	77	.	.	Atlas-SNP
RAPGEF3	10411	hgsc.bcm.edu	hg19	12	48134734	48134734	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RAPGEF3	NM_001098531	exon20	c.G2013T	p.T671T	GTGGTCCGTCAGC	.	84.0	4.0	79.0	0.0	.	98	.	.	Atlas-SNP
STAC3	246329	hgsc.bcm.edu	hg19	12	57640644	57640644	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	STAC3	NM_145064	exon6	c.C546T	p.R182R	CCCAGTGCGCAGG	.	125.0	40.0	122.0	0.0	.	32	.	.	Atlas-SNP
METTL21B	25895	hgsc.bcm.edu	hg19	12	58166537	58166537	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	METTL21B	NM_015433	exon1	c.T30A	p.S10S	CGAATCTGAGTCG	.	73.0	26.0	52.0	0.0	.	16	.	.	Atlas-SNP
PTPRR	5801	hgsc.bcm.edu	hg19	12	71054875	71054875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PTPRR	NM_002849	exon12	c.A1611C	p.Q537H	GCTTCCTTGCTGA	.	62.0	20.0	84.0	0.0	.	109	.	.	Atlas-SNP
ANKS1B	56899	hgsc.bcm.edu	hg19	12	99640465	99640465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ANKS1B	NM_152788	exon13	c.C1934G	p.P645R	GGCAAAGGACTGT	.	180.0	73.0	206.0	0.0	.	180	.	.	Atlas-SNP
NUAK1	9891	hgsc.bcm.edu	hg19	12	106532400	106532400	+	Missense_Mutation	SNP	T	T	G	rs201298691	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NUAK1	NM_014840	exon1	c.A32C	p.D11A	GGGCGGTCCCCCG	.	24.0	15.0	26.0	0.0	.	196	.	.	Atlas-SNP
NUAK1	9891	hgsc.bcm.edu	hg19	12	106532406	106532406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	NUAK1_ENST00000261402,NS,carcinoma,0,2	NUAK1	NM_014840	exon1	c.C26A	p.A9E	TCCCCCGCCACAG	.	25.0	17.0	23.0	0.0	.	196	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	NCOR2_ENST00000405201,NS,carcinoma,0,11	NCOR2	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT	.	43.0	4.0	52.0	2.0	.	475	.	.	Atlas-SNP
RIMBP2	23504	hgsc.bcm.edu	hg19	12	130929724	130929724	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RIMBP2	NM_015347	exon7	c.T621A	p.D207E	ATCCTCATCCATG	.	33.0	25.0	63.0	0.0	.	220	.	.	Atlas-SNP
ZMYM2	7750	hgsc.bcm.edu	hg19	13	20657109	20657109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZMYM2	NM_001190964	exon24	c.A3757G	p.T1253A	CCTTTAACGATGG	.	229.0	100.0	249.0	0.0	.	191	.	.	Atlas-SNP
CSNK1A1L	122011	hgsc.bcm.edu	hg19	13	37679220	37679220	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CSNK1A1L	NM_145203	exon1	c.G174C	p.L58L	CTCATACAGCAAC	.	48.0	18.0	54.0	0.0	.	69	.	.	Atlas-SNP
EDNRB	1910	hgsc.bcm.edu	hg19	13	78477336	78477336	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EDNRB	NM_001201397	exon4	c.G1026C	p.L342L	GATTCGCAGATAA	.	87.0	26.0	130.0	0.0	.	172	.	.	Atlas-SNP
OR4Q3	441669	hgsc.bcm.edu	hg19	14	20215690	20215690	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	OR4Q3,NS,carcinoma,0,1	OR4Q3	NM_172194	exon1	c.A104C	p.Y35S	TTTTTTACATTGC	.	311.0	63.0	348.0	0.0	.	117	.	.	Atlas-SNP
OR4Q3	441669	hgsc.bcm.edu	hg19	14	20216358	20216358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR4Q3	NM_172194	exon1	c.A772T	p.I258F	GTATTCATCTATT	.	164.0	19.0	189.0	0.0	.	117	.	.	Atlas-SNP
APEX1	328	hgsc.bcm.edu	hg19	14	20925548	20925548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	APEX1	NM_080648	exon5	c.T838A	p.W280R	GTTGGTTGGCGCC	.	156.0	52.0	175.0	0.0	.	23	.	.	Atlas-SNP
RIPK3	11035	hgsc.bcm.edu	hg19	14	24807239	24807239	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RIPK3	NM_006871	exon6	c.C672A	p.T224T	TGGTTCGGTTGGC	.	80.0	36.0	77.0	0.0	.	43	.	.	Atlas-SNP
JKAMP	51528	hgsc.bcm.edu	hg19	14	59961929	59961929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	JKAMP	NM_016475	exon4	c.G445T	p.A149S	CATGAAGCCGTCT	.	190.0	69.0	211.0	0.0	.	49	.	.	Atlas-SNP
BCL11B	64919	hgsc.bcm.edu	hg19	14	99640967	99640967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	BCL11B	NM_138576	exon4	c.C2206A	p.P736T	CGAAGGGCGACTG	.	33.0	14.0	14.0	0.0	.	108	.	.	Atlas-SNP
CYFIP1	23191	hgsc.bcm.edu	hg19	15	22947043	22947043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	CYFIP1,NS,carcinoma,0,1	CYFIP1	NM_014608	exon13	c.C1316T	p.T439M	GTGCCACGCGCTA	.	58.0	3.0	63.0	0.0	.	159	.	.	Atlas-SNP
CCDC33	80125	hgsc.bcm.edu	hg19	15	74560789	74560789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CCDC33	NM_025055	exon5	c.T536C	p.M179T	ACCACATGGCTCT	.	25.0	6.0	32.0	0.0	.	160	.	.	Atlas-SNP
SIN3A	25942	hgsc.bcm.edu	hg19	15	75705361	75705361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SIN3A	NM_001145358	exon5	c.C499T	p.R167C	ACACACGACTAAT	.	123.0	41.0	108.0	0.0	.	152	.	.	Atlas-SNP
PIGQ	9091	hgsc.bcm.edu	hg19	16	625870	625870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PIGQ	NM_148920	exon3	c.G721A	p.G241R	TTCCTCGGGAGCA	.	18.0	14.0	33.0	0.0	.	43	.	.	Atlas-SNP
PTX4	390667	hgsc.bcm.edu	hg19	16	1537527	1537527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PTX4	NM_001013658	exon2	c.C571A	p.P191T	CCTCAGGCTGGGT	.	55.0	34.0	71.0	0.0	.	46	.	.	Atlas-SNP
CLEC16A	23274	hgsc.bcm.edu	hg19	16	11056338	11056338	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CLEC16A	NM_015226	exon3	c.T236G	p.V79G	TGTTTGTTTTCTT	.	94.0	38.0	99.0	0.0	.	101	.	.	Atlas-SNP
SYT17	51760	hgsc.bcm.edu	hg19	16	19234475	19234475	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SYT17	NM_016524	exon6	c.A1060T	p.S354C	GATGTGAGCCAAG	.	89.0	33.0	91.0	0.0	.	51	.	.	Atlas-SNP
ERN2	10595	hgsc.bcm.edu	hg19	16	23703609	23703609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ERN2	NM_033266	exon18	c.A2288G	p.Y763C	AGCACGTAGTAGA	.	21.0	8.0	21.0	0.0	.	131	.	.	Atlas-SNP
GPR114	221188	hgsc.bcm.edu	hg19	16	57604440	57604440	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GPR114	NM_153837	exon10	c.A1201T	p.M401L	CAGAACATGTCCA	.	20.0	8.0	18.0	0.0	.	52	.	.	Atlas-SNP
VAC14	55697	hgsc.bcm.edu	hg19	16	70778459	70778459	+	Silent	SNP	C	C	A	rs145571853	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	VAC14	NM_018052	exon13	c.G1395T	p.V465V	TGCCAGCACCTCC	.	64.0	16.0	54.0	0.0	.	65	.	C|1.000;T|0.000	Atlas-SNP
KIAA1609	57707	hgsc.bcm.edu	hg19	16	84514214	84514214	+	Missense_Mutation	SNP	G	G	A	rs149378530		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIAA1609	NM_020947	exon7	c.C1178T	p.P393L	AGCTGCGGGCTGT	.	91.0	43.0	88.0	0.0	.	39	.	G|1.000;T|0.000	Atlas-SNP
GSE1	23199	hgsc.bcm.edu	hg19	16	85696964	85696964	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_014615	exon11	c.G2388A	p.L796L	GTTTTTGCAACTT	.	20.0	9.0	20.0	0.0	.	.	.	.	Atlas-SNP
ACAP1	9744	hgsc.bcm.edu	hg19	17	7254302	7254302	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACAP1	NM_014716	exon21	c.G2106A	p.A702A	TGAAGCGGCCCAG	.	30.0	20.0	53.0	0.0	.	66	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577064	7577064	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	TP53_ENST00000269305,NS,carcinoma,0,1	TP53	NM_000546	exon8	c.A874T	p.K292X	CCCCTTTCTTGCG	.	35.0	17.0	60.0	0.0	.	33396	.	.	Atlas-SNP
GAS7	8522	hgsc.bcm.edu	hg19	17	9846500	9846500	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GAS7	NM_201433	exon7	c.G669T	p.L223L	CTGGAGCAGTAGT	.	36.0	24.0	84.0	0.0	.	113	.	.	Atlas-SNP
MYH8	4626	hgsc.bcm.edu	hg19	17	10307807	10307807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MYH8	NM_002472	exon22	c.T2528A	p.L843H	CTCTTGAGGAGGG	.	257.0	169.0	411.0	1.0	.	346	.	.	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	hg19	17	10411951	10411951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MYH1	NM_005963	exon16	c.G1626A	p.M542I	GGGGAACATGCAC	.	46.0	33.0	81.0	0.0	.	403	.	.	Atlas-SNP
LHX1	3975	hgsc.bcm.edu	hg19	17	35298050	35298050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LHX1	NM_005568	exon3	c.C541T	p.R181W	AAGCGGCGGGGAC	.	39.0	14.0	28.0	0.0	.	48	.	.	Atlas-SNP
KRT9	3857	hgsc.bcm.edu	hg19	17	39723992	39723992	+	Nonsense_Mutation	SNP	C	C	A	rs201817471	by1000genomes;alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KRT9	NM_000226	exon7	c.G1405T	p.G469X	CAGCTCCGGAGGA	.	29.0	17.0	32.0	0.0	.	78	.	C|1.000;G|0.000	Atlas-SNP
TMC6	11322	hgsc.bcm.edu	hg19	17	76120809	76120809	+	Silent	SNP	C	C	T	rs369185930		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TMC6	NM_001127198	exon8	c.G687A	p.P229P	GCGCCACGGCATC	.	89.0	26.0	50.0	0.0	.	42	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76490821	76490821	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DNAH17	NM_173628	exon40	c.G6124C	p.A2042P	CCTCTGCCCGGCT	.	33.0	15.0	32.0	0.0	.	347	.	.	Atlas-SNP
DLGAP1	9229	hgsc.bcm.edu	hg19	18	3879551	3879551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DLGAP1	NM_001242761	exon4	c.C518T	p.A173V	GCCTGCGCCTCGT	.	31.0	11.0	26.0	0.0	.	201	.	.	Atlas-SNP
SPIRE1	56907	hgsc.bcm.edu	hg19	18	12454401	12454401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPIRE1	NM_001128626	exon13	c.G1720A	p.E574K	CCAGCTCTGCCTT	.	174.0	63.0	183.0	0.0	.	120	.	.	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21523852	21523852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LAMA3	NM_198129	exon69	c.C9127A	p.R3043S	AAAGGACGTCTGG	.	74.0	31.0	85.0	0.0	.	397	.	.	Atlas-SNP
RTTN	25914	hgsc.bcm.edu	hg19	18	67802444	67802444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RTTN	NM_173630	exon22	c.A2861G	p.D954G	ACTTCATCAAATA	.	193.0	42.0	171.0	0.0	.	184	.	.	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	hg19	19	1051046	1051046	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ABCA7	NM_019112	exon19	c.T2679A	p.F893L	GCTGTTTGACATG	.	24.0	14.0	47.0	0.0	.	174	.	.	Atlas-SNP
MATK	4145	hgsc.bcm.edu	hg19	19	3783884	3783884	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MATK	NM_002378	exon6	c.C513T	p.R171R	CAGCACGCGGTAG	.	59.0	39.0	80.0	0.0	.	108	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10610444	10610444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KEAP1	NM_012289	exon2	c.C266T	p.P89L	GCGGCCGGTGCAT	.	38.0	30.0	54.0	0.0	.	182	.	.	Atlas-SNP
F2RL3	9002	hgsc.bcm.edu	hg19	19	17001135	17001135	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	F2RL3	NM_003950	exon2	c.G861T	p.V287V	CGCAGTGGTGCTG	.	36.0	19.0	18.0	0.0	.	20	.	.	Atlas-SNP
ZNF729	100287226	hgsc.bcm.edu	hg19	19	22497002	22497002	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF729	NM_001242680	exon4	c.G783C	p.E261D	TGGAGAGACACCT	.	20.0	6.0	16.0	0.0	.	78	.	.	Atlas-SNP
ZNF98	148198	hgsc.bcm.edu	hg19	19	22574550	22574550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	ZNF98_ENST00000357774,NS,carcinoma,+1,2	ZNF98	NM_001098626	exon4	c.G1487C	p.G496A	GCTTTGCCACATT	.	330.0	85.0	257.0	0.0	.	230	.	.	Atlas-SNP
CEACAM3	1084	hgsc.bcm.edu	hg19	19	42301829	42301829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CEACAM3	NM_001815	exon2	c.A373T	p.I125L	CAAGTCATAAAGT	.	63.0	38.0	99.0	0.0	.	37	.	.	Atlas-SNP
LRRC4B	94030	hgsc.bcm.edu	hg19	19	51021453	51021453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LRRC4B	NM_001080457	exon3	c.C1517T	p.P506L	CCCCGCGGCTGCA	.	15.0	14.0	15.0	0.0	.	89	.	.	Atlas-SNP
ZNF577	84765	hgsc.bcm.edu	hg19	19	52376841	52376841	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF577	NM_032679	exon7	c.A402T	p.R134S	AACACATCTATGG	.	60.0	37.0	135.0	0.0	.	63	.	.	Atlas-SNP
ZNF577	84765	hgsc.bcm.edu	hg19	19	52376925	52376925	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF577	NM_032679	exon7	c.A318T	p.K106N	AGAATCTTTTCCT	.	49.0	33.0	93.0	0.0	.	63	.	.	Atlas-SNP
PRPF31	26121	hgsc.bcm.edu	hg19	19	54626868	54626868	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRPF31	NM_015629	exon6	c.T456A	p.N152K	GAACAATGAGAAC	.	81.0	44.0	74.0	0.0	.	48	.	.	Atlas-SNP
NFATC2	4773	hgsc.bcm.edu	hg19	20	50071174	50071174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NFATC2	NM_012340	exon6	c.G1760A	p.S587N	AGGCAGCTGTCTG	.	120.0	71.0	74.0	0.0	.	112	.	.	Atlas-SNP
ATP9A	10079	hgsc.bcm.edu	hg19	20	50292712	50292712	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ATP9A	NM_006045	exon10	c.G835C	p.E279Q	GGAGTTCTCTGCC	.	132.0	7.0	105.0	0.0	.	135	.	.	Atlas-SNP
PDXK	8566	hgsc.bcm.edu	hg19	21	45175644	45175644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDXK	NM_003681	exon10	c.A825T	p.K275N	TGCAAAAGGTACG	.	14.0	8.0	24.0	0.0	.	17	.	.	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	hg19	21	47856895	47856895	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCNT	NM_006031	exon40	c.A9000T	p.T3000T	CAGGACAGTTAAT	.	25.0	11.0	39.0	0.0	.	283	.	.	Atlas-SNP
RIMBP3	85376	hgsc.bcm.edu	hg19	22	20458090	20458090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RIMBP3	NM_015672	exon1	c.C3212A	p.T1071N	GACATAGTTCCCC	.	408.0	94.0	466.0	1.0	.	42	.	.	Atlas-SNP
VPREB3	29802	hgsc.bcm.edu	hg19	22	24096504	24096504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	VPREB3	NM_013378	exon1	c.C47T	p.S16L	TCACCTGACAGGA	.	74.0	24.0	100.0	0.0	.	11	.	.	Atlas-SNP
PRR14L	253143	hgsc.bcm.edu	hg19	22	32112941	32112941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRR14L	NM_173566	exon4	c.G884A	p.G295E	TCCTTCCCATTGT	.	181.0	39.0	201.0	0.0	.	198	.	.	Atlas-SNP
CSF2RB	1439	hgsc.bcm.edu	hg19	22	37334154	37334154	+	Missense_Mutation	SNP	G	G	T	rs373820480	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CSF2RB	NM_000395	exon14	c.G2304T	p.E768D	TGTGGAGCTCCCT	.	36.0	16.0	33.0	0.0	.	104	.	.	Atlas-SNP
GTPBP1	9567	hgsc.bcm.edu	hg19	22	39125539	39125539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GTPBP1	NM_004286	exon11	c.G1789T	p.G597C	AAAAAGGGCCCCC	.	70.0	18.0	76.0	0.0	.	51	.	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24383090	24383090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001136234	exon1	c.C2213A	p.A738D	GGCAGGCCTTCCC	.	124.0	96.0	113.0	0.0	.	.	.	.	Atlas-SNP
FAM47A	158724	hgsc.bcm.edu	hg19	X	34149528	34149528	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FAM47A	NM_203408	exon1	c.C868G	p.P290A	CTGTGGGTTCGTC	.	71.0	56.0	70.0	0.0	.	249	.	.	Atlas-SNP
POF1B	79983	hgsc.bcm.edu	hg19	X	84561303	84561303	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	POF1B	NM_024921	exon12	c.T1201C	p.L401L	CTTCCAATGCCTG	.	87.0	67.0	113.0	0.0	.	77	.	.	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	hg19	X	123540198	123540198	+	Silent	SNP	C	C	T	rs148101479		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001163278	exon26	c.G5124A	p.T1708T	AGTTGCCGTCAAG	.	76.0	59.0	83.0	0.0	.	.	.	C|1.000;T|0.000	Atlas-SNP
RGMB	285704	hgsc.bcm.edu	hg19	5	98109681	98109682	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RGMB	NM_001012761	exon3	c.30_31insC	p.A10fs	.	.	29.0	15.0	9.0	0.0	.	29	.	.	Atlas-Indel,Pindel
SLC9A4	389015	hgsc.bcm.edu	hg19	2	103121886	103121912	+	In_Frame_Del	DEL	TCATCTGCTTCACCCTGGCCTTCTGCC	TCATCTGCTTCACCCTGGCCTTCTGCC	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	TCATCTGCTTCACCCTGGCCTTCTGCC	TCATCTGCTTCACCCTGGCCTTCTGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC9A4	NM_001011552	exon4	c.1153_1179del	p.385_393del	.	.	38.0	10.0	47.0	0.0	.	115	.	.	Atlas-INDEL
PPIL2	23759	hgsc.bcm.edu	hg19	22	22025285	22025298	+	In_Frame_Del	DEL	GTCTCTCTCTGCAG	GTCTCTCTCTGCAG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	GTCTCTCTCTGCAG	GTCTCTCTCTGCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PPIL2	NM_014337	exon4	c.129_140del	p.43_47del	.	.	139.0	10.0	206.0	0.0	.	38	.	.	Atlas-INDEL
RABL6	55684	hgsc.bcm.edu	hg19	9	139722950	139722951	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001173989	exon4	c.318_319insAG	p.K106fs	.	.	69.0	46.0	27.0	0.0	.	.	.	.	Atlas-Indel,Pindel
TRIM39	56658	hgsc.bcm.edu	hg19	6	30298592	30298593	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TRIM39	NM_172016	exon4	c.487_488del	p.163_163del	.	.	68.0	21.0	72.0	0.0	.	56	.	.	Atlas-Indel,Pindel
HPR	3250	hgsc.bcm.edu	hg19	16	72108240	72108240	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	HPR,NS,carcinoma,0,1	HPR	NM_020995	exon3	c.148delC	p.R50fs	.	.	345.0	106.0	346.0	0.0	.	43	.	.	Atlas-Indel,Pindel
CYTIP	9595	hgsc.bcm.edu	hg19	2	158283867	158283867	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CYTIP	NM_004288	exon6	c.543delA	p.L181fs	.	.	96.0	38.0	91.0	0.0	.	45	.	.	Atlas-Indel,Pindel
XIRP2	129446	hgsc.bcm.edu	hg19	2	168105997	168105997	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP2	NM_152381	exon9	c.8094delG	p.L2698fs	.	.	127.0	43.0	135.0	0.0	.	914	.	.	Atlas-Indel,Pindel
C3	718	hgsc.bcm.edu	hg19	19	6678293	6678293	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	C3	NM_000064	exon40	c.4721delA	p.D1574fs	.	.	51.0	29.0	93.0	0.0	.	192	.	.	Atlas-Indel,Pindel
TUBGCP6	85378	hgsc.bcm.edu	hg19	22	50656529	50656539	+	Frame_Shift_Del	DEL	TTCTCCGTGAG	TTCTCCGTGAG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	TTCTCCGTGAG	TTCTCCGTGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TUBGCP6	NM_020461	exon24	c.5177_5187del	p.1726_1729del	.	.	34.0	12.0	37.0	0.0	.	132	.	.	Atlas-INDEL
EFR3B	22979	hgsc.bcm.edu	hg19	2	25351059	25351060	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EFR3B	NM_014971	exon6	c.493_494insG	p.M165fs	.	.	63.0	20.0	64.0	0.0	.	29	.	.	Atlas-Indel,Pindel
DNAH7	56171	hgsc.bcm.edu	hg19	2	196771386	196771387	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DNAH7	NM_018897	exon27	c.4332_4333insT	p.L1444fs	.	.	303.0	107.0	326.0	0.0	.	512	.	.	Atlas-Indel,Pindel
ANK1	286	hgsc.bcm.edu	hg19	8	41574509	41574514	+	In_Frame_Del	DEL	AATATT	AATATT	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	AATATT	AATATT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ANK1	NM_001142446	exon13	c.1461_1466del	p.487_489del	.	.	217.0	49.0	237.0	0.0	.	497	.	.	Atlas-Indel,Pindel
XIRP2	129446	hgsc.bcm.edu	hg19	2	168102891	168102891	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP2	NM_152381	exon9	c.4988delT	p.I1663fs	.	.	211.0	95.0	207.0	0.0	.	914	.	.	Atlas-Indel,Pindel
IRX1	79192	hgsc.bcm.edu	hg19	5	3596419	3596419	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	IRX1	NM_024337	exon1	c.199delG	p.A67fs	.	.	37.0	13.0	28.0	0.0	.	106	.	.	Atlas-INDEL
MLL3	58508	hgsc.bcm.edu	hg19	7	151927092	151927092	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MLL3	NM_170606	exon18	c.2893delA	p.S965fs	.	.	565.0	44.0	730.0	0.0	.	1564	.	.	Atlas-INDEL
APC2	10297	hgsc.bcm.edu	hg19	19	1468353	1468354	+	In_Frame_Ins	INS	-	-	AGT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	APC2	NM_005883	exon15	c.5053_5054insAGT	p.E1685delinsEX	.	.	36.0	24.0	50.0	0.0	.	50	.	.	Atlas-Indel,Pindel
LMBR1	64327	hgsc.bcm.edu	hg19	7	156619307	156619308	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LMBR1	NM_022458	exon4	c.311_312insC	p.L104fs	.	.	42.0	30.0	60.0	0.0	.	35	.	.	Atlas-Indel,Pindel
RASSF10	644943	hgsc.bcm.edu	hg19	11	13031752	13031752	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001080521	exon1	c.628delT	p.C210fs	.	.	90.0	28.0	68.0	0.0	.	.	.	.	Atlas-Indel,Pindel
SPEG	10290	hgsc.bcm.edu	hg19	2	220326629	220326631	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPEG	NM_005876	exon7	c.2465_2467del	p.822_823del	.	.	65.0	24.0	60.0	0.0	.	272	.	.	Atlas-Indel,Pindel
KIAA1211L	343990	hgsc.bcm.edu	hg19	2	99439712	99439712	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_207362	exon7	c.1025delC	p.A342fs	.	.	19.0	11.0	11.0	0.0	.	.	.	.	Atlas-INDEL
XKR4	114786	hgsc.bcm.edu	hg19	8	56436755	56436757	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XKR4	NM_052898	exon3	c.1921_1923del	p.641_641del	.	.	41.0	11.0	33.0	0.0	.	104	.	.	Atlas-Indel,Pindel
TRIM13	10206	hgsc.bcm.edu	hg19	13	50588496	50588497	+	RNA	INS	-	-	AC	rs10676627	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TRIM13	.	.	.	.	.	.	37.0	16.0	52.0	0.0	.	30	.	.	Atlas-INDEL
BSN	8927	hgsc.bcm.edu	hg19	3	49690047	49690048	+	In_Frame_Ins	INS	-	-	AGCAGC	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	BSN	NM_003458	exon5	c.3058_3059insAGCAGC	p.K1020delinsKQQ	.	.	49.0	17.0	44.0	0.0	.	272	.	.	Atlas-Indel,Pindel
SENP2	59343	hgsc.bcm.edu	hg19	3	185318578	185318578	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SENP2	NM_021627	exon5	c.383delG	p.S128fs	.	.	153.0	56.0	136.0	0.0	.	88	.	.	Atlas-Indel,Pindel
EVPL	2125	hgsc.bcm.edu	hg19	17	74014610	74014611	+	Frame_Shift_Ins	INS	-	-	CCCT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EVPL	NM_001988	exon12	c.1356_1357insAGGG	p.G452fs	.	.	125.0	26.0	77.0	0.0	.	155	.	.	Atlas-Indel,Pindel
ABCE1	6059	hgsc.bcm.edu	hg19	4	146032129	146032129	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ABCE1	NM_002940	exon8	c.622delC	p.H208fs	.	.	122.0	47.0	114.0	0.0	.	47	.	.	Atlas-Indel,Pindel
PPIL2	23759	hgsc.bcm.edu	hg19	22	22025284	22025309	+	In_Frame_Del	DEL	TGTCCTTTTTCAGTCTCTCTCTGCAG	TGTCCTTTTTCAGTCTCTCTCTGCAG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	TGTCCTTTTTCAGTCTCTCTCTGCAG	TGTCCTTTTTCAGTCTCTCTCTGCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PPIL2	NM_014337	exon4	c.129_140del	p.43_47del	.	.	160.0	21.0	213.0	0.0	.	38	.	.	Pindel
LATS1	9113	hgsc.bcm.edu	hg19	6	150004716	150004717	+	Frame_Shift_Ins	INS	-	-	ACACGCATACTTTTCACAGGCTGTTGAATAGG	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LATS1	NM_004690	exon4	c.1509_1510insCCTATTCAACAGCCTGTGAAAAGTATGCGTGT	p.V503_L504delinsVLFNSLX	.	.	64.0	14.0	127.0	0.0	.	241	.	.	Pindel
PRB2	653247	hgsc.bcm.edu	hg19	12	11545952	11546074	+	In_Frame_Del	DEL	TGCCTCCTTGTGGGGGTGGTCCTTGTGGCTTTCCTGGAGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGGGGGTGGTCCTTGTGGCTTTCCTGGAGGAGGTGGGGGACCTTGAGGCTGGT	TGCCTCCTTGTGGGGGTGGTCCTTGTGGCTTTCCTGGAGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGGGGGTGGTCCTTGTGGCTTTCCTGGAGGAGGTGGGGGACCTTGAGGCTGGT	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	TGCCTCCTTGTGGGGGTGGTCCTTGTGGCTTTCCTGGAGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGGGGGTGGTCCTTGTGGCTTTCCTGGAGGAGGTGGGGGACCTTGAGGCTGGT	TGCCTCCTTGTGGGGGTGGTCCTTGTGGCTTTCCTGGAGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGGGGGTGGTCCTTGTGGCTTTCCTGGAGGAGGTGGGGGACCTTGAGGCTGGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRB2	NM_006248	exon3	c.939_1061del	p.313_354del	.	.	321.0	13.0	322.0	0.0	.	168	.	.	Pindel