Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ZNF683 257101 hgsc.bcm.edu hg19 1 26694244 26694244 + Silent SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . ZNF683 NM_173574 exon3 c.T159C p.H53H TGGGCCATGAGCA . 81.0 19.0 101.0 0.0 . 51 . . Atlas-SNP PUM1 9698 hgsc.bcm.edu hg19 1 31438867 31438867 + Missense_Mutation SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . PUM1 NM_014676 exon13 c.C2048T p.A683V AGGGTGGCGCCGA . 135.0 15.0 124.0 0.0 . 107 . . Atlas-SNP ATG4C 84938 hgsc.bcm.edu hg19 1 63294791 63294791 + Missense_Mutation SNP G G T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . ATG4C NM_178221 exon7 c.G877T p.V293F ATTCTAGTTCCTG . 116.0 27.0 107.0 0.0 . 96 . . Atlas-SNP SLC22A15 55356 hgsc.bcm.edu hg19 1 116574033 116574033 + Missense_Mutation SNP A A C novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . SLC22A15 NM_018420 exon6 c.A775C p.S259R CGACTGAGTGAGG . 100.0 21.0 112.0 0.0 . 65 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152279556 152279556 + Silent SNP G G T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . FLG NM_002016 exon3 c.C7806A p.G2602G TCTGGAGCCATCT . 257.0 61.0 202.0 0.0 . 900 . . Atlas-SNP FCRL5 83416 hgsc.bcm.edu hg19 1 157516904 157516904 + Missense_Mutation SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . FCRL5 NM_031281 exon3 c.G136A p.G46R GAAATCCCTTGCA . 87.0 5.0 51.0 0.0 . 177 . . Atlas-SNP PLEKHA6 22874 hgsc.bcm.edu hg19 1 204192627 204192627 + Missense_Mutation SNP C C A rs201146402 alternate_allele TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . PLEKHA6 NM_014935 exon22 c.G3118T p.A1040S TGTCGGCGCCCCG . 161.0 15.0 157.0 0.0 . 115 . . Atlas-SNP USH2A 7399 hgsc.bcm.edu hg19 1 215808006 215808006 + Missense_Mutation SNP C C A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . USH2A NM_206933 exon70 c.G15092T p.R5031L TTGCTCCGCGATC . 155.0 18.0 94.0 0.0 . 1168 . . Atlas-SNP NID1 4811 hgsc.bcm.edu hg19 1 236193033 236193033 + Nonsense_Mutation SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . NID1 NM_002508 exon7 c.C1555T p.Q519X CAGCCTGGCGAGT . 61.0 26.0 75.0 0.0 . 196 . . Atlas-SNP TCF23 150921 hgsc.bcm.edu hg19 2 27372096 27372096 + Missense_Mutation SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . TCF23 NM_175769 exon1 c.G95A p.R32K CTGACAGGAAGAG . 109.0 6.0 98.0 0.0 . 28 . . Atlas-SNP AFTPH 54812 hgsc.bcm.edu hg19 2 64779926 64779926 + Missense_Mutation SNP T T G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 AFTPH_ENST00000238855,NS,carcinoma,0,2 AFTPH NM_017657 exon2 c.T1318G p.S440A TTTGGCTCTGCCA . 67.0 5.0 69.0 0.0 . 117 . . Atlas-SNP TGOLN2 10618 hgsc.bcm.edu hg19 2 85554158 85554158 + Missense_Mutation SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . TGOLN2 NM_001206841 exon2 c.G697A p.D233N GCCCGTCTATTGG . 58.0 7.0 78.0 0.0 . 32 . . Atlas-SNP NCAPH 23397 hgsc.bcm.edu hg19 2 97017638 97017638 + Missense_Mutation SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . NCAPH NM_015341 exon7 c.A790G p.T264A CTGTCCACTCTCC . 74.0 19.0 72.0 0.0 . 67 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179427137 179427137 + Missense_Mutation SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . TTN NM_001267550 exon326 c.G83722A p.E27908K ACTTTTCACTCCC . 64.0 17.0 33.0 0.0 . 18412 . . Atlas-SNP MSTN 2660 hgsc.bcm.edu hg19 2 190922105 190922105 + Missense_Mutation SNP G G C novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . MSTN NM_005259 exon3 c.C1007G p.A336G GGGCCTGCTGAAC . 79.0 18.0 55.0 0.0 . 46 . . Atlas-SNP ALS2CR11 151254 hgsc.bcm.edu hg19 2 202436741 202436741 + Silent SNP T T C novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . ALS2CR11 NM_001168217 exon8 c.A756G p.L252L AGGTTTTAACTGA . 54.0 14.0 36.0 0.0 . 194 . . Atlas-SNP NRP2 8828 hgsc.bcm.edu hg19 2 206581088 206581088 + Silent SNP C C A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . NRP2 NM_201279 exon3 c.C423A p.I141I CGAGATCTTCAAG . 54.0 16.0 65.0 0.0 . 179 . . Atlas-SNP PIKFYVE 200576 hgsc.bcm.edu hg19 2 209218741 209218741 + Silent SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . PIKFYVE NM_015040 exon40 c.A5964G p.L1988L CCCTCTATATATT . 95.0 22.0 99.0 0.0 . 223 . . Atlas-SNP TRPM8 79054 hgsc.bcm.edu hg19 2 234875362 234875362 + Missense_Mutation SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . TRPM8 NM_024080 exon15 c.C1988T p.A663V TGGAGGCCACAGA . 73.0 23.0 47.0 0.0 . 146 . . Atlas-SNP TAMM41 132001 hgsc.bcm.edu hg19 3 11858718 11858718 + Missense_Mutation SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . . NM_138807 exon5 c.T656C p.I219T TGTAGTATGCTGC . 71.0 16.0 90.0 0.0 . . . . Atlas-SNP DLEC1 9940 hgsc.bcm.edu hg19 3 38159367 38159367 + Missense_Mutation SNP G G A rs370658013 TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . DLEC1 NM_007337 exon33 c.G4556A p.R1519Q ACTTCCGGCTTAT . 80.0 19.0 84.0 0.0 . 278 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266136 41266136 + Missense_Mutation SNP T T C rs121913407 bycluster TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 CTNNB1,NS,carcinoma,0,1 CTNNB1 NM_001098209 exon3 c.T133C p.S45P GCTCCTTCTCTGA . 159.0 60.0 129.0 0.0 . 4904 . . Atlas-SNP CD200R1 131450 hgsc.bcm.edu hg19 3 112648003 112648003 + Missense_Mutation SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . CD200R1 NM_138939 exon4 c.C554T p.S185L TCTGGTGATGTGA . 80.0 11.0 72.0 0.0 . 91 . . Atlas-SNP C3orf27 23434 hgsc.bcm.edu hg19 3 128292489 128292489 + Silent SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . C3orf27 NM_007354 exon3 c.C84T p.R28R CTGGAGGCGGGAG . 115.0 25.0 126.0 0.0 . 23 . . Atlas-SNP SLC51A 200931 hgsc.bcm.edu hg19 3 195953959 195953959 + Missense_Mutation SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . . NM_152672 exon3 c.G257A p.R86Q AGAGGCGGACTCT . 51.0 5.0 43.0 0.0 . . . . Atlas-SNP DHX15 1665 hgsc.bcm.edu hg19 4 24531241 24531241 + Silent SNP T T A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . DHX15 NM_001358 exon13 c.A2253T p.T751T GATATCTGTACAT . 120.0 10.0 94.0 0.0 . 69 . . Atlas-SNP UGT2A1 10941 hgsc.bcm.edu hg19 4 70504723 70504723 + Silent SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . UGT2A1 NM_001252274 exon3 c.G1239A p.Q413Q GGTCATCTGGTCA . 196.0 22.0 160.0 0.0 . 131 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79158773 79158773 + Splice_Site SNP T T C novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . FRAS1 NM_001166133 exon3 c.216+2T>C . AGAAGGTACGGTA . 42.0 7.0 52.0 0.0 . 779 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88537513 88537513 + Missense_Mutation SNP A A C rs112275895 TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . DSPP NM_014208 exon5 c.A3699C p.E1233D CAATGAAAGCAGC . 164.0 24.0 137.0 0.0 . 174 . A|0.500;C|0.500 Atlas-SNP ADH1B 125 hgsc.bcm.edu hg19 4 100232814 100232814 + Splice_Site SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . ADH1B NM_000668 exon8 c.829-1G>A . AGCCATCTGGAAT . 59.0 7.0 65.0 0.0 . 68 . . Atlas-SNP ANK2 287 hgsc.bcm.edu hg19 4 114275909 114275909 + Silent SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . ANK2 NM_001148 exon38 c.A6135G p.T2045T GAAAACAGAGAAT . 151.0 40.0 154.0 0.0 . 576 . . Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126241701 126241701 + Missense_Mutation SNP G G T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . FAT4 NM_024582 exon1 c.G4135T p.D1379Y AAACTGGACTTTG . 93.0 21.0 97.0 0.0 . 1752 . . Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126373179 126373179 + Missense_Mutation SNP T T C novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . FAT4 NM_024582 exon9 c.T11008C p.S3670P CTGAATTCCCAGC . 51.0 5.0 43.0 0.0 . 1752 . . Atlas-SNP PCDH18 54510 hgsc.bcm.edu hg19 4 138450819 138450819 + Missense_Mutation SNP G G C novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . PCDH18 NM_019035 exon1 c.C2424G p.I808M TGATGAGATTGTC . 71.0 17.0 74.0 0.0 . 229 . . Atlas-SNP EGFLAM 133584 hgsc.bcm.edu hg19 5 38409153 38409153 + Silent SNP C C T rs375160813 TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . EGFLAM NM_001205301 exon10 c.C1296T p.H432H CGAACACGGGAGG . 67.0 14.0 66.0 0.0 . 302 . . Atlas-SNP CCDC125 202243 hgsc.bcm.edu hg19 5 68595919 68595919 + Missense_Mutation SNP G G C novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 CCDC125,colon,carcinoma,0,1 CCDC125 NM_176816 exon7 c.C736G p.L246V TATCAAGCATGGC . 110.0 6.0 71.0 0.0 . 41 . . Atlas-SNP POC5 134359 hgsc.bcm.edu hg19 5 74973679 74973679 + Missense_Mutation SNP T T G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . POC5 NM_001099271 exon11 c.A1504C p.I502L TGCTAATTCTATT . 104.0 29.0 64.0 0.0 . 82 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 89979611 89979611 + Missense_Mutation SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . GPR98 NM_032119 exon28 c.C5873T p.S1958F GTGGTTCTTTGGG . 110.0 39.0 103.0 0.0 . 605 . . Atlas-SNP ANKRD32 84250 hgsc.bcm.edu hg19 5 94022288 94022288 + Silent SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . ANKRD32 NM_032290 exon16 c.A1986G p.S662S TTCTTCACAGGAA . 67.0 14.0 34.0 0.0 . 117 . . Atlas-SNP PCDHGA4 56111 hgsc.bcm.edu hg19 5 140737153 140737153 + Missense_Mutation SNP G G T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . PCDHGA4 NM_018917 exon1 c.G2386T p.D796Y ACTCAGGATTTAC . 167.0 58.0 136.0 0.0 . 150 . . Atlas-SNP SLIT3 6586 hgsc.bcm.edu hg19 5 168123358 168123358 + Silent SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . SLIT3 NM_001271946 exon28 c.C3042T p.N1014N GGCATTGTTTTCG . 74.0 32.0 68.0 0.0 . 224 . . Atlas-SNP FOXI1 2299 hgsc.bcm.edu hg19 5 169535273 169535273 + Silent SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . FOXI1 NM_012188 exon2 c.G795A p.E265E CCCAGAGAAGCGG . 161.0 19.0 110.0 0.0 . 70 . . Atlas-SNP LCP2 3937 hgsc.bcm.edu hg19 5 169689689 169689689 + Missense_Mutation SNP T T G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . LCP2 NM_005565 exon13 c.A876C p.E292D ATGTCTTTCCGTG . 152.0 52.0 119.0 0.0 . 133 . . Atlas-SNP EGFL8 80864 hgsc.bcm.edu hg19 6 32135153 32135153 + Missense_Mutation SNP G G T rs149576421 alternate_allele TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . EGFL8 NM_030652 exon7 c.G628T p.A210S GAGCGCGCTCTGA . 116.0 5.0 98.0 0.0 . 15 . G|1.000;A|0.000 Atlas-SNP LHFPL5 222662 hgsc.bcm.edu hg19 6 35773531 35773531 + Missense_Mutation SNP G G A rs370902662 TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . LHFPL5 NM_182548 exon1 c.G84A p.M28I CGTGATGTGGGGT . 136.0 43.0 95.0 0.0 . 44 . . Atlas-SNP KHDC1L 100129128 hgsc.bcm.edu hg19 6 73935082 73935082 + Missense_Mutation SNP G G T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . KHDC1L NM_001126063 exon1 c.C50A p.P17H TTTTCGGGCAGGG . 86.0 27.0 82.0 0.0 . 22 . . Atlas-SNP PRDM1 639 hgsc.bcm.edu hg19 6 106552731 106552731 + Silent SNP C C T rs373718206 TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . PRDM1 NM_001198 exon5 c.C696T p.S232S ACCGAGCACTGAG . 60.0 7.0 38.0 0.0 . 195 . . Atlas-SNP REV3L 5980 hgsc.bcm.edu hg19 6 111732714 111732714 + Missense_Mutation SNP T T C novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . REV3L NM_002912 exon3 c.A373G p.I125V GATAGATCTTCAT . 234.0 56.0 131.0 0.0 . 386 . . Atlas-SNP KIAA1244 57221 hgsc.bcm.edu hg19 6 138619874 138619874 + Silent SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . KIAA1244 NM_020340 exon22 c.C3780T p.F1260F ACCTTTCGAGCGC . 95.0 8.0 72.0 0.0 . 236 . . Atlas-SNP CCR6 1235 hgsc.bcm.edu hg19 6 167550515 167550515 + Missense_Mutation SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . CCR6 NM_004367 exon3 c.G797A p.C266Y TGGCTTGTCAGAT . 77.0 16.0 58.0 0.0 . 36 . . Atlas-SNP MTMR9 66036 hgsc.bcm.edu hg19 8 11167038 11167038 + Missense_Mutation SNP A A T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . MTMR9 NM_015458 exon6 c.A812T p.Y271F AAAGGTATCACAT . 44.0 15.0 45.0 0.0 . 58 . . Atlas-SNP CPA6 57094 hgsc.bcm.edu hg19 8 68658304 68658304 + Missense_Mutation SNP A A G rs147067921 alternate_allele TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . CPA6 NM_020361 exon1 c.T61C p.F21L TCAAAAAGAGCCA . 225.0 13.0 126.0 0.0 . 69 . A|1.000;T|0.000 Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 69020369 69020369 + Missense_Mutation SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . PREX2 NM_024870 exon24 c.C2741T p.A914V ATAGGGCCTGGCC . 94.0 5.0 50.0 0.0 . 614 . . Atlas-SNP ZC2HC1A 51101 hgsc.bcm.edu hg19 8 79598833 79598833 + Silent SNP T T C novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . . NM_016010 exon4 c.T342C p.S114S ACCTTCTTATGAT . 270.0 37.0 127.0 0.0 . . . . Atlas-SNP SLC25A32 81034 hgsc.bcm.edu hg19 8 104427069 104427069 + Missense_Mutation SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . SLC25A32 NM_030780 exon1 c.G97A p.G33S AGACGCCGCCGCT . 173.0 102.0 113.0 0.0 . 36 . . Atlas-SNP IFNA10 3446 hgsc.bcm.edu hg19 9 21206860 21206860 + Silent SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . IFNA10 NM_002171 exon1 c.C237T p.V79V ATGGAGGACAGAG . 154.0 14.0 151.0 0.0 . 29 . . Atlas-SNP DCAF12 25853 hgsc.bcm.edu hg19 9 34089528 34089528 + Missense_Mutation SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . DCAF12 NM_015397 exon8 c.T1085C p.L362P AACAGCAGGGAGC . 52.0 23.0 45.0 0.0 . 37 . . Atlas-SNP VPS13A 23230 hgsc.bcm.edu hg19 9 79820239 79820239 + Silent SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . VPS13A NM_001018038 exon4 c.A198G p.K66K TCTTAAACTTATA . 235.0 56.0 213.0 0.0 . 735 . . Atlas-SNP LRSAM1 90678 hgsc.bcm.edu hg19 9 130242226 130242226 + Missense_Mutation SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . LRSAM1 NM_001005373 exon14 c.C1012T p.R338W TCCAGCCGGATCC . 144.0 12.0 166.0 0.0 . 40 . . Atlas-SNP COL5A1 1289 hgsc.bcm.edu hg19 9 137713941 137713941 + Splice_Site SNP A A T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . COL5A1 NM_000093 exon59 c.4555-2A>T . CTTTTCAGGGTAT . 28.0 9.0 25.0 0.0 . 323 . . Atlas-SNP FAM171A1 221061 hgsc.bcm.edu hg19 10 15255230 15255230 + Missense_Mutation SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . FAM171A1 NM_001010924 exon8 c.C2357T p.T786M AGCTGCGTGTAGG . 101.0 11.0 136.0 0.0 . 252 . . Atlas-SNP WDR96 80217 hgsc.bcm.edu hg19 10 105932273 105932273 + Missense_Mutation SNP T T G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . WDR96 NM_025145 exon20 c.A2481C p.E827D GTCATTTTCTTCC . 40.0 11.0 45.0 0.0 . 183 . . Atlas-SNP NRAP 4892 hgsc.bcm.edu hg19 10 115349517 115349517 + Missense_Mutation SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . NRAP NM_001261463 exon41 c.G4996A p.G1666S TCCAGCCAACACC . 64.0 7.0 44.0 0.0 . 208 . . Atlas-SNP NLRP14 338323 hgsc.bcm.edu hg19 11 7063785 7063785 + Silent SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . NLRP14 NM_176822 exon4 c.A528G p.P176P ACAGCCACAGATC . 100.0 24.0 125.0 0.0 . 187 . . Atlas-SNP CTR9 9646 hgsc.bcm.edu hg19 11 10785358 10785358 + Missense_Mutation SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . CTR9 NM_014633 exon9 c.G1126A p.E376K AATTACGAAACTA . 64.0 8.0 55.0 0.0 . 94 . . Atlas-SNP RASSF10 644943 hgsc.bcm.edu hg19 11 13031864 13031864 + Missense_Mutation SNP C C G rs374969897 TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . . NM_001080521 exon1 c.C741G p.H247Q GCTCCACGAGCTG . 117.0 32.0 130.0 0.0 . . . . Atlas-SNP OR4A5 81318 hgsc.bcm.edu hg19 11 51411561 51411561 + Silent SNP G G A rs5011060 TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . OR4A5 NM_001005272 exon1 c.C835T p.L279L GACTCAGCATGTG . 81.0 15.0 88.0 0.0 . 116 . . Atlas-SNP GPR137 56834 hgsc.bcm.edu hg19 11 64055851 64055851 + Missense_Mutation SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . GPR137 NM_001170726 exon7 c.G997A p.V333I TACCTGGTATTTG . 31.0 7.0 50.0 0.0 . 52 . . Atlas-SNP SNX15 29907 hgsc.bcm.edu hg19 11 64802558 64802558 + Missense_Mutation SNP G G T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . SNX15 NM_147777 exon5 c.G400T p.V134L TTGGAGGTGTCCA . 109.0 9.0 140.0 0.0 . 35 . . Atlas-SNP RELA 5970 hgsc.bcm.edu hg19 11 65422089 65422089 + Silent SNP G G T rs150493312 alternate_allele TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . RELA NM_021975 exon11 c.C1416A p.S472S AAACTCGGAGTTG . 73.0 20.0 81.0 0.0 . 44 . G|1.000;C|0.000 Atlas-SNP KRTAP5-7 440050 hgsc.bcm.edu hg19 11 71238737 71238737 + Missense_Mutation SNP T T A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . KRTAP5-7 NM_001012503 exon1 c.T391A p.C131S CCCTGCTGCTGTT . 67.0 5.0 83.0 0.0 . 23 . . Atlas-SNP SIK3 23387 hgsc.bcm.edu hg19 11 116728796 116728796 + Missense_Mutation SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . SIK3 NM_025164 exon20 c.C3067T p.H1023Y ACCCGTGGGGCGG . 80.0 22.0 124.0 0.0 . 112 . . Atlas-SNP NCAPD3 23310 hgsc.bcm.edu hg19 11 134027961 134027961 + Missense_Mutation SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . NCAPD3 NM_015261 exon31 c.C4036T p.P1346S ACATGGGCCTGTG . 42.0 12.0 37.0 0.0 . 141 . . Atlas-SNP CLSTN3 9746 hgsc.bcm.edu hg19 12 7295867 7295867 + Missense_Mutation SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . CLSTN3 NM_014718 exon12 c.A1807G p.T603A TTTGCCACGCCCG . 30.0 12.0 36.0 0.0 . 84 . . Atlas-SNP CD69 969 hgsc.bcm.edu hg19 12 9906144 9906144 + Missense_Mutation SNP T T G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . CD69 NM_001781 exon5 c.A533C p.N178T TCTGTGTTTTTCA . 123.0 15.0 97.0 0.0 . 23 . . Atlas-SNP CNTN1 1272 hgsc.bcm.edu hg19 12 41422971 41422971 + Missense_Mutation SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 CNTN1,NS,carcinoma,0,1 CNTN1 NM_001843 exon23 c.G2930A p.R977H AGGTTCGCGCGCA . 114.0 33.0 95.0 0.0 . 207 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70949887 70949887 + Missense_Mutation SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . PTPRB NM_001109754 exon19 c.T4756C p.S1586P CCGTGGAGTTCTG . 76.0 6.0 81.0 0.0 . 676 . . Atlas-SNP PPFIA2 8499 hgsc.bcm.edu hg19 12 81747020 81747020 + Missense_Mutation SNP A A T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . PPFIA2 NM_001220476 exon16 c.T1872A p.D624E ATCATCATCAATA . 117.0 40.0 74.0 0.0 . 207 . . Atlas-SNP STAB2 55576 hgsc.bcm.edu hg19 12 104157269 104157269 + Splice_Site SNP G G C novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . STAB2 NM_017564 exon68 c.7489-1G>C . CAAACAGTCGGAA . 75.0 21.0 69.0 0.0 . 370 . . Atlas-SNP TMEM132D 121256 hgsc.bcm.edu hg19 12 129569203 129569203 + Missense_Mutation SNP C C A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . TMEM132D NM_133448 exon6 c.G1488T p.M496I GCCTTTCATTTCT . 95.0 19.0 109.0 0.0 . 299 . . Atlas-SNP OR4K17 390436 hgsc.bcm.edu hg19 14 20585954 20585954 + Missense_Mutation SNP C C A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . OR4K17 NM_001004715 exon1 c.C389A p.T130N GCTTCACTCAGAT . 92.0 18.0 85.0 0.0 . 58 . . Atlas-SNP NIN 51199 hgsc.bcm.edu hg19 14 51233078 51233078 + Missense_Mutation SNP G G T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . NIN NM_020921 exon14 c.C1582A p.L528M CTTGCAGGAAGAA . 81.0 14.0 78.0 0.0 . 475 . . Atlas-SNP NIN 51199 hgsc.bcm.edu hg19 14 51233079 51233079 + Missense_Mutation SNP G G T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . NIN NM_020921 exon14 c.C1581A p.F527L TTGCAGGAAGAAC . 84.0 15.0 77.0 0.0 . 475 . . Atlas-SNP PTGER2 5732 hgsc.bcm.edu hg19 14 52781678 52781678 + Missense_Mutation SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . PTGER2 NM_000956 exon1 c.A412G p.I138V CTCTCGATCGGGC . 56.0 14.0 72.0 0.0 . 27 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 33825515 33825515 + Missense_Mutation SNP C C A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . RYR3 NM_001243996 exon5 c.C358A p.L120I CAGTATCTAACAT . 31.0 7.0 26.0 0.0 . 760 . . Atlas-SNP LCMT2 9836 hgsc.bcm.edu hg19 15 43621087 43621087 + Missense_Mutation SNP C C A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . LCMT2 NM_014793 exon1 c.G1601T p.R534L GAATGCCGGGCTT . 36.0 8.0 22.0 0.0 . 48 . . Atlas-SNP MYO5A 4644 hgsc.bcm.edu hg19 15 52652277 52652277 + Missense_Mutation SNP T T C novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . MYO5A NM_000259 exon25 c.A3311G p.H1104R GGCACATGCTGCA . 51.0 13.0 54.0 0.0 . 145 . . Atlas-SNP MBTPS1 8720 hgsc.bcm.edu hg19 16 84118684 84118684 + Missense_Mutation SNP C C G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . MBTPS1 NM_003791 exon10 c.G1190C p.G397A CGCACGCCAGCAC . 123.0 11.0 200.0 0.0 . 85 . . Atlas-SNP CYB5D2 124936 hgsc.bcm.edu hg19 17 4058038 4058038 + Silent SNP G G A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . CYB5D2 NM_144611 exon3 c.G462A p.A154A AGCTGCGATCACC . 110.0 43.0 148.0 0.0 . 22 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577114 7577114 + Missense_Mutation SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 TP53_ENST00000455263,NS,other,0,111 TP53 NM_000546 exon8 c.G824A p.C275Y CAGGCACAAACAC . 52.0 15.0 84.0 0.0 . 33396 . . Atlas-SNP STXBP4 252983 hgsc.bcm.edu hg19 17 53158439 53158439 + Missense_Mutation SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . STXBP4 NM_178509 exon16 c.A1384G p.T462A TCTCAGACTTCCC . 131.0 47.0 105.0 0.0 . 41 . . Atlas-SNP USP32 84669 hgsc.bcm.edu hg19 17 58260713 58260713 + Missense_Mutation SNP C C A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . USP32 NM_032582 exon31 c.G3936T p.L1312F TGGTACCAAAAAA . 160.0 84.0 111.0 0.0 . 128 . . Atlas-SNP MYOM1 8736 hgsc.bcm.edu hg19 18 3134722 3134722 + Silent SNP C C A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . MYOM1 NM_003803 exon16 c.G2310T p.G770G GTAGTACCCGACC . 196.0 86.0 90.0 0.0 . 192 . . Atlas-SNP PALM 5064 hgsc.bcm.edu hg19 19 746557 746557 + Missense_Mutation SNP A A G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . PALM NM_002579 exon9 c.A907G p.M303V ATCTTCATGGGTT . 55.0 22.0 83.0 0.0 . 26 . . Atlas-SNP ZNF91 7644 hgsc.bcm.edu hg19 19 23545412 23545412 + Silent SNP T T C novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . ZNF91 NM_003430 exon4 c.A369G p.R123R ACCTTTTCTTAAC . 39.0 4.0 40.0 0.0 . 349 . . Atlas-SNP ZNFX1 57169 hgsc.bcm.edu hg19 20 47864862 47864862 + Missense_Mutation SNP T T C novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . ZNFX1 NM_021035 exon14 c.A4699G p.M1567V CATCCATGTGGCA . 72.0 35.0 85.0 0.0 . 194 . . Atlas-SNP DEPDC5 9681 hgsc.bcm.edu hg19 22 32234735 32234735 + Missense_Mutation SNP C C T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . DEPDC5 NM_001242896 exon27 c.C2419T p.L807F CAACGTCTCATGC . 58.0 20.0 87.0 0.0 . 266 . . Atlas-SNP MCHR1 2847 hgsc.bcm.edu hg19 22 41075734 41075734 + Silent SNP G G T rs201514957 bycluster TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . MCHR1 NM_005297 exon1 c.G285T p.S95S CACTTCGGCAGGT . 63.0 21.0 65.0 0.0 . 45 . . Atlas-SNP LDOC1L 84247 hgsc.bcm.edu hg19 22 44893693 44893693 + Splice_Site SNP T T A novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . LDOC1L . . . . GGGCCCTGGAGGA . 48.0 7.0 38.0 0.0 . 24 . . Atlas-SNP MXRA5 25878 hgsc.bcm.edu hg19 X 3239233 3239233 + Missense_Mutation SNP G G T novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . MXRA5 NM_015419 exon5 c.C4493A p.T1498K AGAATTGTGGATG . 106.0 5.0 75.0 0.0 . 815 . . Atlas-SNP GLUD2 2747 hgsc.bcm.edu hg19 X 120182071 120182071 + Missense_Mutation SNP C C G novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . GLUD2 NM_012084 exon1 c.C533G p.P178R ATGTGCCGTTTGG . 46.0 27.0 34.0 0.0 . 89 . . Atlas-SNP ADAMTSL1 92949 hgsc.bcm.edu hg19 9 18888005 18888005 + Frame_Shift_Del DEL G G - novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . ADAMTSL1 NM_001040272 exon24 c.4425delA p.A1475fs . . 95.0 16.0 109.0 0.0 . 306 . . Atlas-Indel,Pindel RTKN2 219790 hgsc.bcm.edu hg19 10 63976948 63976948 + Frame_Shift_Del DEL G G - novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . RTKN2 NM_145307 exon9 c.950delT p.L317fs . . 145.0 39.0 170.0 0.0 . 68 . . Atlas-Indel,Pindel CNTROB 116840 hgsc.bcm.edu hg19 17 7851880 7851898 + Frame_Shift_Del DEL GGGGGGCTCTGCCTGCTGA GGGGGGCTCTGCCTGCTGA - novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 GGGGGGCTCTGCCTGCTGA GGGGGGCTCTGCCTGCTGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . CNTROB NM_053051 exon17 c.2455_2473del p.819_825del . . 89.0 20.0 147.0 0.0 . 61 . . Atlas-Indel,Pindel ASPRV1 151516 hgsc.bcm.edu hg19 2 70188307 70188356 + Frame_Shift_Del DEL AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG - novel TCGA-RG-A7D4-01A-12D-A33Q-10 TCGA-RG-A7D4-10A-01D-A33Q-10 AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d11dc224-6c52-4463-837f-20d99569f8b9 473df61f-c817-4a0c-a458-934d47687fa9 . ASPRV1 NM_152792 exon1 c.466_515del p.156_172del . . 64.0 26.0 56.0 0.0 . 41 . . Pindel