Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm UBR4 23352 hgsc.bcm.edu hg19 1 19513738 19513738 + Missense_Mutation SNP T T A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . UBR4 NM_020765 exon13 c.A1552T p.I518L TCTGTATGGAGGT . 82.0 19.0 60.0 0.0 . 415 . . Atlas-SNP HMGB4 127540 hgsc.bcm.edu hg19 1 34329977 34329977 + Missense_Mutation SNP C C A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . HMGB4 NM_145205 exon2 c.C185A p.A62D ATGAAGCCCTGGC . 117.0 18.0 88.0 0.0 . 27 . . Atlas-SNP MSH4 4438 hgsc.bcm.edu hg19 1 76262910 76262910 + Silent SNP T T G novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . MSH4 NM_002440 exon1 c.T240G p.A80A GCCAGCTCAAGGC . 36.0 12.0 28.0 0.0 . 147 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32842852 32842852 + Missense_Mutation SNP C C A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . BIRC6 NM_016252 exon74 c.C14455A p.P4819T TTGGATCCTGACA . 85.0 30.0 51.0 0.0 . 838 . . Atlas-SNP LTBP1 4052 hgsc.bcm.edu hg19 2 33413881 33413881 + Missense_Mutation SNP A A G novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . LTBP1 NM_206943 exon7 c.A1664G p.Q555R AGACACAGCTTGG . 103.0 35.0 84.0 0.0 . 317 . . Atlas-SNP CCT7 10574 hgsc.bcm.edu hg19 2 73479859 73479859 + Missense_Mutation SNP A A G novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . CCT7 NM_006429 exon12 c.A1502G p.N501S GGATCAATGCGCT . 198.0 83.0 119.0 0.0 . 60 . . Atlas-SNP NAT8 9027 hgsc.bcm.edu hg19 2 73868638 73868638 + Missense_Mutation SNP G G T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . NAT8 NM_003960 exon2 c.C118A p.P40T TTCGAGGCAGCTT . 86.0 36.0 68.0 0.0 . 26 . . Atlas-SNP C2orf68 388969 hgsc.bcm.edu hg19 2 85836186 85836186 + Missense_Mutation SNP T T C novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . C2orf68 NM_001013649 exon4 c.A383G p.D128G GGGTCATCACCCT . 93.0 35.0 71.0 0.0 . 5 . . Atlas-SNP OLA1 29789 hgsc.bcm.edu hg19 2 175111522 175111522 + Missense_Mutation SNP C C T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . OLA1 NM_013341 exon2 c.G22A p.D8N TTCCATCACCTCC . 288.0 30.0 138.0 0.0 . 37 . . Atlas-SNP ERBB4 2066 hgsc.bcm.edu hg19 2 212576873 212576873 + Missense_Mutation SNP C C G rs149272231 byfrequency;alternate_allele TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . ERBB4 NM_001042599 exon9 c.G1026C p.L342F TGACATCAATGAT . 140.0 73.0 134.0 0.0 . 480 . C|1.000;T|0.000 Atlas-SNP HDAC4 9759 hgsc.bcm.edu hg19 2 240158361 240158361 + Splice_Site SNP C C G novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . HDAC4 NM_006037 exon4 c.23-1G>C . GTCCATCTGGAGA . 169.0 86.0 144.0 0.0 . 127 . . Atlas-SNP TRIM71 131405 hgsc.bcm.edu hg19 3 32932669 32932669 + Missense_Mutation SNP G G A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . TRIM71 NM_001039111 exon4 c.G1973A p.G658D CAGCCGGCGTGGC . 51.0 17.0 28.0 0.0 . 73 . . Atlas-SNP SLC22A14 9389 hgsc.bcm.edu hg19 3 38347895 38347895 + Silent SNP C C T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . SLC22A14 NM_004803 exon1 c.C378T p.G126G CAATGGCAGTTTC . 114.0 24.0 122.0 0.0 . 64 . . Atlas-SNP RAD54L2 23132 hgsc.bcm.edu hg19 3 51661661 51661661 + Missense_Mutation SNP C C G novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . RAD54L2 NM_015106 exon3 c.C232G p.Q78E TCATCTCAGTCTG . 113.0 34.0 93.0 0.0 . 94 . . Atlas-SNP BCHE 590 hgsc.bcm.edu hg19 3 165548695 165548695 + Missense_Mutation SNP C C T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . BCHE NM_000055 exon2 c.G127A p.G43R TCATCCCTCTGAC . 216.0 26.0 168.0 0.0 . 136 . . Atlas-SNP HES1 3280 hgsc.bcm.edu hg19 3 193854425 193854425 + Missense_Mutation SNP A A T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . HES1 NM_005524 exon2 c.A128T p.E43V TTATGGAGAAAAG . 190.0 87.0 137.0 0.0 . 23 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195518119 195518119 + Missense_Mutation SNP A A T rs201789760 bycluster TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . MUC4 NM_018406 exon2 c.T332A p.M111K GTCTCCATCACAT . 218.0 26.0 128.0 0.0 . 1505 . . Atlas-SNP CDH10 1008 hgsc.bcm.edu hg19 5 24487960 24487960 + Missense_Mutation SNP C C T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 CDH10,NS,carcinoma,0,1 CDH10 NM_006727 exon12 c.G2179A p.A727T GGGGTGCGGTGGG . 114.0 14.0 88.0 0.0 . 391 . . Atlas-SNP CRHBP 1393 hgsc.bcm.edu hg19 5 76249897 76249897 + Silent SNP C C G novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 CRHBP,NS,carcinoma,0,1 CRHBP NM_001882 exon3 c.C219G p.T73T CTTCACCGCCGAC . 99.0 35.0 74.0 0.0 . 46 . . Atlas-SNP LNPEP 4012 hgsc.bcm.edu hg19 5 96360250 96360250 + Missense_Mutation SNP G G A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . LNPEP NM_005575 exon15 c.G2587A p.V863M ACAACTGTGTTCA . 74.0 8.0 56.0 0.0 . 80 . . Atlas-SNP ACSL6 23305 hgsc.bcm.edu hg19 5 131298318 131298318 + Silent SNP C C T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . ACSL6 NM_001009185 exon18 c.G1767A p.Q589Q TTCTCCCTGAGCA . 155.0 8.0 122.0 0.0 . 169 . . Atlas-SNP PCDHA5 56143 hgsc.bcm.edu hg19 5 140203515 140203515 + Missense_Mutation SNP G G A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 PCDHA5_ENST00000529859,NS,carcinoma,0,4 PCDHA5 NM_018908 exon1 c.G2155A p.A719T TACACCGCGCTGC . 135.0 16.0 92.0 0.0 . 361 . . Atlas-SNP COL23A1 91522 hgsc.bcm.edu hg19 5 177673419 177673419 + Silent SNP C C A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . COL23A1 NM_173465 exon23 c.G1332T p.S444S CTCACCCGACGCA . 87.0 35.0 60.0 0.0 . 47 . . Atlas-SNP ADAMTS2 9509 hgsc.bcm.edu hg19 5 178541106 178541106 + Missense_Mutation SNP C C A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 ADAMTS2,rectum,carcinoma,0,1 ADAMTS2 NM_014244 exon22 c.G3398T p.R1133L GATGGCCGCACCT . 241.0 111.0 192.0 0.0 . 190 . . Atlas-SNP SRPK1 6732 hgsc.bcm.edu hg19 6 35806150 35806150 + Missense_Mutation SNP C C A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . SRPK1 NM_003137 exon15 c.G1747T p.A583S TTCCTGCCACAAT . 98.0 38.0 64.0 0.0 . 61 . . Atlas-SNP MAPK14 1432 hgsc.bcm.edu hg19 6 36075327 36075327 + Missense_Mutation SNP G G A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 MAPK14_ENST00000229794,NS,carcinoma,0,3 MAPK14 NM_139012 exon11 c.G937A p.D313N TACCACGATCCTG . 128.0 50.0 80.0 0.0 . 75 . . Atlas-SNP MACC1 346389 hgsc.bcm.edu hg19 7 20198542 20198542 + Missense_Mutation SNP T T C novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . MACC1 NM_182762 exon5 c.A1442G p.H481R AACAAGTGCATCT . 121.0 54.0 98.0 0.0 . 99 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48319312 48319312 + Missense_Mutation SNP A A G novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . ABCA13 NM_152701 exon18 c.A8521G p.T2841A ACTTCCACAAGAA . 154.0 57.0 112.0 0.0 . 1192 . . Atlas-SNP AUTS2 26053 hgsc.bcm.edu hg19 7 69583171 69583171 + Silent SNP A A T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . AUTS2 NM_001127231 exon3 c.A576T p.G192G CAGTGGAGAATCC . 194.0 62.0 158.0 0.0 . 173 . . Atlas-SNP MLXIPL 51085 hgsc.bcm.edu hg19 7 73009991 73009991 + Silent SNP C C A rs370481859 alternate_allele TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . MLXIPL NM_032951 exon15 c.G2286T p.T762T GTGCAGCGTACGG . 126.0 50.0 90.0 0.0 . 54 . . Atlas-SNP SEMA3A 10371 hgsc.bcm.edu hg19 7 83606504 83606504 + Missense_Mutation SNP C C A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 SEMA3A,colon,carcinoma,0,1 SEMA3A NM_006080 exon15 c.G1661T p.R554I TGTCGTCTTGTGC . 345.0 133.0 324.0 0.0 . 121 . . Atlas-SNP ZNF804B 219578 hgsc.bcm.edu hg19 7 88847522 88847522 + Missense_Mutation SNP C C A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . ZNF804B NM_181646 exon2 c.C162A p.N54K GGCAAACTTTTAC . 114.0 41.0 83.0 0.0 . 322 . . Atlas-SNP ATXN7L1 222255 hgsc.bcm.edu hg19 7 105248313 105248313 + Missense_Mutation SNP T T C novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . ATXN7L1 NM_020725 exon12 c.A2572G p.R858G GAGTCCTTATCCT . 220.0 73.0 150.0 0.0 . 56 . . Atlas-SNP LAMB4 22798 hgsc.bcm.edu hg19 7 107704317 107704317 + Missense_Mutation SNP A A G novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . LAMB4 NM_007356 exon22 c.T2950C p.C984R GGCTGCAGGACTC . 242.0 92.0 183.0 0.0 . 253 . . Atlas-SNP ARF5 381 hgsc.bcm.edu hg19 7 127230141 127230141 + Missense_Mutation SNP A A G novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . ARF5 NM_001662 exon4 c.A280G p.S94G GTGGACAGTAATG . 48.0 17.0 33.0 0.0 . 20 . . Atlas-SNP PIP 5304 hgsc.bcm.edu hg19 7 142836665 142836665 + Missense_Mutation SNP C C T rs148216903 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . PIP NM_002652 exon4 c.C371T p.P124L TCTGCCCTGATGA . 240.0 18.0 158.0 0.0 . 34 . C|0.997;G|0.003 Atlas-SNP SLC24A2 25769 hgsc.bcm.edu hg19 9 19576992 19576992 + Silent SNP G G T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . SLC24A2 NM_020344 exon5 c.C1158A p.L386L CTTGTGGAGAATT . 104.0 64.0 118.0 0.0 . 93 . . Atlas-SNP OR13A1 79290 hgsc.bcm.edu hg19 10 45799382 45799382 + Silent SNP G G T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . OR13A1 NM_001004297 exon4 c.C489A p.A163A GGCTGTGGCCAGC . 57.0 15.0 37.0 0.0 . 49 . . Atlas-SNP C10orf71 118461 hgsc.bcm.edu hg19 10 50530973 50530973 + Missense_Mutation SNP T T C novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . C10orf71 NM_001135196 exon3 c.T383C p.V128A TGGAGGTGCCAGT . 89.0 36.0 54.0 0.0 . 179 . . Atlas-SNP C10orf76 79591 hgsc.bcm.edu hg19 10 103783452 103783452 + Missense_Mutation SNP T T A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . C10orf76 NM_024541 exon7 c.A562T p.I188L CAAATATGCTGTT . 207.0 52.0 159.0 0.0 . 48 . . Atlas-SNP OR5L2 26338 hgsc.bcm.edu hg19 11 55594866 55594866 + Missense_Mutation SNP C C A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . OR5L2 NM_001004739 exon1 c.C172A p.P58T CACACCCCCGTGT . 269.0 109.0 252.0 0.0 . 135 . . Atlas-SNP LRRC55 219527 hgsc.bcm.edu hg19 11 56949612 56949612 + Missense_Mutation SNP C C T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . LRRC55 NM_001005210 exon1 c.C245T p.P82L GCTGCCCCGTCCT . 90.0 36.0 60.0 0.0 . 52 . . Atlas-SNP SPTBN2 6712 hgsc.bcm.edu hg19 11 66475653 66475653 + Missense_Mutation SNP G G A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . SPTBN2 NM_006946 exon11 c.C1309T p.R437W TCTCCCGCATGGC . 146.0 34.0 103.0 0.0 . 188 . . Atlas-SNP MMP13 4322 hgsc.bcm.edu hg19 11 102816423 102816423 + Missense_Mutation SNP C C G novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . MMP13 NM_002427 exon9 c.G1267C p.D423H GGAAGTCTTCTTC . 76.0 23.0 67.0 0.0 . 75 . . Atlas-SNP MMP13 4322 hgsc.bcm.edu hg19 11 102816459 102816459 + Missense_Mutation SNP T T C novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . MMP13 NM_002427 exon9 c.A1231G p.I411V CCATAATATGGTT . 74.0 23.0 61.0 0.0 . 75 . . Atlas-SNP NTF3 4908 hgsc.bcm.edu hg19 12 5604082 5604082 + Silent SNP C C T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . NTF3 NM_001102654 exon2 c.C741T p.L247L TAAACTCGTGGGC . 55.0 34.0 76.0 0.0 . 50 . . Atlas-SNP PTPRO 5800 hgsc.bcm.edu hg19 12 15739913 15739913 + Missense_Mutation SNP G G C novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . PTPRO NM_030667 exon24 c.G3338C p.S1113T CAGAAAGTATCCT . 91.0 25.0 120.0 0.0 . 148 . . Atlas-SNP KRT1 3848 hgsc.bcm.edu hg19 12 53069229 53069229 + Silent SNP G G A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . KRT1 NM_006121 exon9 c.C1683T p.S561S ACCTCCGGAGCCG . 29.0 4.0 2.0 0.0 . 110 . . Atlas-SNP HNF1A 6927 hgsc.bcm.edu hg19 12 121416684 121416684 + Missense_Mutation SNP T T C novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . HNF1A NM_000545 exon1 c.T113C p.L38P ACCTCCTGGCTGG . 127.0 44.0 112.0 0.0 . 302 . . Atlas-SNP PITPNM2 57605 hgsc.bcm.edu hg19 12 123498529 123498529 + Missense_Mutation SNP G G A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . PITPNM2 NM_020845 exon3 c.C139T p.P47S TGTACGGCCGGTT . 141.0 64.0 115.0 0.0 . 105 . . Atlas-SNP AACS 65985 hgsc.bcm.edu hg19 12 125561142 125561142 + Missense_Mutation SNP G G T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . AACS NM_023928 exon3 c.G343T p.A115S AGAGTTGCCCTTT . 78.0 31.0 60.0 0.0 . 59 . . Atlas-SNP PROSER1 80209 hgsc.bcm.edu hg19 13 39586338 39586338 + Missense_Mutation SNP G G T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . . NM_025138 exon12 c.C2594A p.S865Y AAAACAGAACTGC . 191.0 74.0 144.0 0.0 . . . . Atlas-SNP ABCC4 10257 hgsc.bcm.edu hg19 13 95858910 95858910 + Missense_Mutation SNP A A T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . ABCC4 NM_005845 exon8 c.T1037A p.I346N GCTGTGATCACAC . 72.0 28.0 57.0 0.0 . 248 . . Atlas-SNP CRIP2 1397 hgsc.bcm.edu hg19 14 105945934 105945934 + Missense_Mutation SNP G G T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . CRIP2 NM_001270837 exon8 c.G793T p.G265C AACACCGGTGCGG . 79.0 34.0 60.0 0.0 . 7 . . Atlas-SNP GABPB1 2553 hgsc.bcm.edu hg19 15 50596296 50596296 + Missense_Mutation SNP T T C novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . GABPB1 NM_016654 exon3 c.A143G p.Y48C TGACCATACTGTG . 121.0 44.0 87.0 0.0 . 33 . . Atlas-SNP CGNL1 84952 hgsc.bcm.edu hg19 15 57730244 57730244 + Missense_Mutation SNP G G T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . CGNL1 NM_032866 exon2 c.G47T p.G16V AATATGGGGTCCA . 47.0 20.0 23.0 0.0 . 125 . . Atlas-SNP HERC1 8925 hgsc.bcm.edu hg19 15 63988457 63988457 + Nonsense_Mutation SNP T T A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . HERC1 NM_003922 exon27 c.A4987T p.R1663X TCAATCTGCTTCC . 147.0 58.0 112.0 0.0 . 624 . . Atlas-SNP CLK3 1198 hgsc.bcm.edu hg19 15 74919878 74919878 + Splice_Site SNP A A G novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . CLK3 NM_003992 exon9 c.913-2A>G . CCTTTCAGAGCTG . 105.0 37.0 83.0 0.0 . 78 . . Atlas-SNP PSTPIP1 9051 hgsc.bcm.edu hg19 15 77310567 77310567 + Missense_Mutation SNP A A T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . PSTPIP1 NM_003978 exon2 c.A115T p.M39L AAAGACATGGAGG . 77.0 31.0 53.0 0.0 . 50 . . Atlas-SNP ARNT2 9915 hgsc.bcm.edu hg19 15 80873588 80873588 + Silent SNP A A T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . ARNT2 NM_014862 exon17 c.A1761T p.P587P AATCCCATCTCAG . 193.0 83.0 161.0 0.0 . 88 . . Atlas-SNP AP3B2 8120 hgsc.bcm.edu hg19 15 83330629 83330629 + Silent SNP C C T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . AP3B2 NM_004644 exon24 c.G2907A p.G969G CAGCTCCCCAACA . 108.0 50.0 87.0 0.0 . 103 . . Atlas-SNP PDZD9 255762 hgsc.bcm.edu hg19 16 21995863 21995863 + Missense_Mutation SNP G G A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . PDZD9 NM_173806 exon3 c.C340T p.H114Y CAGGGTGATGCAC . 247.0 56.0 261.0 0.0 . 18 . . Atlas-SNP MVP 9961 hgsc.bcm.edu hg19 16 29848051 29848051 + Silent SNP G G C novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . MVP NM_017458 exon7 c.G681C p.L227L AGCCCTGCACCTC . 43.0 10.0 27.0 0.0 . 80 . . Atlas-SNP ASPHD1 253982 hgsc.bcm.edu hg19 16 29912699 29912699 + Missense_Mutation SNP C C A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . ASPHD1 NM_181718 exon1 c.C407A p.P136H GGGATCCCGGGGA . 35.0 16.0 31.0 0.0 . 28 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578290 7578290 + Splice_Site SNP C C T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 TP53_ENST00000545858,colon,carcinoma,+2,71 TP53 NM_000546 exon7 c.560-1G>A . CCAGACCTAAGAG . 71.0 41.0 87.0 0.0 . 33396 . . Atlas-SNP MED13 9969 hgsc.bcm.edu hg19 17 60088411 60088411 + Silent SNP G G A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . MED13 NM_005121 exon9 c.C1467T p.D489D ATCTGCGTCCATG . 351.0 34.0 287.0 0.0 . 181 . . Atlas-SNP USP36 57602 hgsc.bcm.edu hg19 17 76814798 76814798 + Missense_Mutation SNP G G C novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . USP36 NM_025090 exon10 c.C974G p.T325S GAAAGGGTTAAGA . 162.0 55.0 138.0 0.0 . 243 . . Atlas-SNP CCBE1 147372 hgsc.bcm.edu hg19 18 57363935 57363935 + Silent SNP G G A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . CCBE1 NM_133459 exon2 c.C138T p.I46I TGAGCAGATTTCT . 115.0 34.0 113.0 0.0 . 59 . . Atlas-SNP CEBPA 1050 hgsc.bcm.edu hg19 19 33792919 33792919 + Silent SNP C C T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 CEBPA,NS,haematopoietic_neoplasm,0,2 CEBPA NM_004364 exon1 c.G402A p.A134A GGCGGCCGCGCAG . 14.0 9.0 4.0 1.0 . 986 . . Atlas-SNP HAMP 57817 hgsc.bcm.edu hg19 19 35775694 35775694 + Silent SNP G G A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . HAMP NM_021175 exon2 c.G93A p.T31T ACAGACGGGACAA . 113.0 41.0 74.0 0.0 . 14 . . Atlas-SNP ARHGAP33 115703 hgsc.bcm.edu hg19 19 36273524 36273524 + Missense_Mutation SNP A A G novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . ARHGAP33 NM_052948 exon14 c.A1256G p.E419G GGGAGGAGGAGCG . 53.0 20.0 38.0 0.0 . 102 . . Atlas-SNP PRX 57716 hgsc.bcm.edu hg19 19 40902988 40902988 + Missense_Mutation SNP G G A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . PRX NM_181882 exon7 c.C1271T p.S424F CCAAGGGAGGGCA . 139.0 52.0 85.0 0.0 . 151 . . Atlas-SNP CYP2A7 1549 hgsc.bcm.edu hg19 19 41386034 41386034 + Missense_Mutation SNP G G T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . CYP2A7 NM_000764 exon4 c.C609A p.S203R CATCATGCTCAGC . 108.0 46.0 74.0 0.0 . 71 . . Atlas-SNP IGFL4 444882 hgsc.bcm.edu hg19 19 46543655 46543655 + Silent SNP G G A novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . IGFL4 NM_001002923 exon3 c.C90T p.C30C TGGCTGGCATAGC . 101.0 45.0 65.0 0.0 . 13 . . Atlas-SNP NCOA6 23054 hgsc.bcm.edu hg19 20 33329069 33329069 + Missense_Mutation SNP G G T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . NCOA6 NM_014071 exon11 c.C4991A p.S1664Y ATTGAGGATGAAT . 113.0 31.0 82.0 0.0 . 219 . . Atlas-SNP BID 637 hgsc.bcm.edu hg19 22 18256445 18256445 + Missense_Mutation SNP C C T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . BID NM_197966 exon1 c.G11A p.G4D CCAGCACCGCTGC . 31.0 24.0 72.0 0.0 . 18 . . Atlas-SNP MYO18B 84700 hgsc.bcm.edu hg19 22 26422950 26422950 + Missense_Mutation SNP C C G novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . MYO18B NM_032608 exon43 c.C7010G p.T2337R GGGGCACAACCCT . 34.0 22.0 23.0 0.0 . 322 . . Atlas-SNP PRKX 5613 hgsc.bcm.edu hg19 X 3533926 3533926 + Missense_Mutation SNP G G T novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . PRKX NM_005044 exon7 c.C881A p.A294E TCATTCGCCCCGT . 39.0 4.0 112.0 0.0 . 29 . . Atlas-SNP ND2 0 hgsc.bcm.edu hg19 MT 5329 5329 + Missense_Mutation SNP T T C novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . . ENST00000361453 exon1 c.T860C p.L287P TCACCCTCCTTAA . 53.0 4.0 43.0 0.0 . . . . Atlas-SNP ILDR1 286676 hgsc.bcm.edu hg19 3 121712300 121712300 + Frame_Shift_Del DEL C C - novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . ILDR1 NM_001199799 exon7 c.1297delC p.R433fs . . 109.0 47.0 66.0 0.0 . 120 . . Atlas-Indel,Pindel TJP1 7082 hgsc.bcm.edu hg19 15 30000996 30000997 + Frame_Shift_Del DEL AA AA - novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 AA AA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . TJP1 NM_003257 exon25 c.4617_4618del p.1539_1540del . . 288.0 107.0 187.0 0.0 . 140 . . Atlas-Indel,Pindel CLK3 1198 hgsc.bcm.edu hg19 15 74919883 74919895 + Frame_Shift_Del DEL TGTGAGGAGAAGT TGTGAGGAGAAGT - novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 TGTGAGGAGAAGT TGTGAGGAGAAGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . CLK3 NM_001130028 exon9 c.1359_1371del p.453_457del . . 105.0 38.0 83.0 0.0 . 78 . . Atlas-Indel,Pindel GCN1L1 10985 hgsc.bcm.edu hg19 12 120589173 120589174 + Frame_Shift_Del DEL CA CA - novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 CA CA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . GCN1L1 NM_006836 exon34 c.4085_4086del p.1362_1362del . . 66.0 22.0 63.0 0.0 . 207 . . Atlas-INDEL RELN 5649 hgsc.bcm.edu hg19 7 103198496 103198496 + Frame_Shift_Del DEL C C - novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . RELN NM_173054 exon37 c.5531delA p.E1844fs . . 284.0 105.0 191.0 0.0 . 593 . . Atlas-Indel,Pindel GCN1L1 10985 hgsc.bcm.edu hg19 12 120589170 120589171 + Frame_Shift_Del DEL AA AA - novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 AA AA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . GCN1L1 NM_006836 exon34 c.4088_4089del p.1363_1363del . . 69.0 22.0 65.0 0.0 . 207 . . Atlas-INDEL PRKX 5613 hgsc.bcm.edu hg19 X 3533925 3533925 + Frame_Shift_Del DEL C C - novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . PRKX NM_005044 exon7 c.883delA p.N295fs . . 141.0 102.0 114.0 0.0 . 29 . . Atlas-INDEL PRKX 5613 hgsc.bcm.edu hg19 X 3533930 3533930 + Frame_Shift_Del DEL C C - novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . PRKX NM_005044 exon7 c.878delG p.G293fs . . 144.0 37.0 112.0 0.0 . 29 . . Pindel PRKX 5613 hgsc.bcm.edu hg19 X 3533925 3533926 + Frame_Shift_Del DEL CG CG - novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 CG CG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . PRKX NM_005044 exon7 c.882_883del p.294_295del . . 143.0 17.0 113.0 0.0 . 29 . . Pindel GCN1L1 10985 hgsc.bcm.edu hg19 12 120589170 120589174 + Frame_Shift_Del DEL AAGCA AAGCA - novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 AAGCA AAGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . GCN1L1 NM_006836 exon34 c.4085_4089del p.1362_1363del . . 68.0 22.0 65.0 0.0 . 207 . . Pindel CACNA1G 8913 hgsc.bcm.edu hg19 17 48653551 48653551 + Frame_Shift_Del DEL C C - novel TCGA-T1-A6J8-01A-11D-A32G-10 TCGA-T1-A6J8-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a537d6e4-82a8-4627-a88b-5173d666e2f1 b3cc3039-470f-4d68-9bd1-f2fb51d0d468 . CACNA1G NM_001256360 exon8 c.1787delG p.S596fs . . 111.0 36.0 79.0 0.0 . 659 . . Pindel