Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm TNFRSF4 7293 hgsc.bcm.edu hg19 1 1146948 1146948 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TNFRSF4 NM_003327 exon7 c.T821A p.L274Q TTGGCCAGGGTGG . 52.0 23.0 85.0 0.0 . 12 . . Atlas-SNP KIAA1751 85452 hgsc.bcm.edu hg19 1 1888169 1888169 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIAA1751 NM_001080484 exon17 c.A1906T p.T636S GAGACGTGGTCTC . 100.0 47.0 133.0 0.0 . 92 . . Atlas-SNP KIAA1751 85452 hgsc.bcm.edu hg19 1 1900247 1900247 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIAA1751 NM_001080484 exon11 c.A1072G p.R358G GCTTTCTGAGCTT . 43.0 21.0 51.0 0.0 . 92 . . Atlas-SNP PLCH2 9651 hgsc.bcm.edu hg19 1 2409915 2409915 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PLCH2 NM_014638 exon2 c.T125C p.V42A GTCCAGTGGAGCG . 41.0 23.0 54.0 0.0 . 131 . . Atlas-SNP PRDM16 63976 hgsc.bcm.edu hg19 1 3102902 3102902 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PRDM16 NM_022114 exon2 c.T251A p.F84Y CAGACTTCGAGCT . 121.0 51.0 190.0 0.0 . 147 . . Atlas-SNP PRDM16 63976 hgsc.bcm.edu hg19 1 3319469 3319469 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PRDM16 NM_022114 exon6 c.T791A p.L264Q AGGGCCTGGCTGA . 167.0 89.0 212.0 0.0 . 147 . . Atlas-SNP CCDC27 148870 hgsc.bcm.edu hg19 1 3680278 3680278 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCDC27 NM_152492 exon8 c.G1330T p.A444S GTGATTGCGTCTT . 177.0 24.0 278.0 0.0 . 79 . . Atlas-SNP NPHP4 261734 hgsc.bcm.edu hg19 1 5967225 5967225 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NPHP4 NM_015102 exon13 c.A1561T p.R521W TAGGCCTGGCCAA . 101.0 49.0 149.0 0.0 . 119 . . Atlas-SNP TAS1R1 80835 hgsc.bcm.edu hg19 1 6639185 6639185 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TAS1R1 NM_138697 exon6 c.C2067T p.A689A AGCGGCCCAGCTG . 92.0 62.0 113.0 0.0 . 76 . . Atlas-SNP SLC45A1 50651 hgsc.bcm.edu hg19 1 8390821 8390821 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC45A1 NM_001080397 exon4 c.A1268T p.E423V GCAGAGAGGGTGC . 73.0 23.0 98.0 0.0 . 85 . . Atlas-SNP CLSTN1 22883 hgsc.bcm.edu hg19 1 9795215 9795215 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CLSTN1 NM_001009566 exon14 c.C1901T p.T634I ATGCAGGTGGCCT . 37.0 15.0 59.0 0.0 . 88 . . Atlas-SNP UBE4B 10277 hgsc.bcm.edu hg19 1 10221232 10221232 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UBE4B NM_001105562 exon23 c.T3086C p.M1029T TAAACATGTTGAT . 123.0 50.0 120.0 0.0 . 233 . . Atlas-SNP PTCHD2 57540 hgsc.bcm.edu hg19 1 11589857 11589857 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PTCHD2 NM_020780 exon15 c.T2943C p.R981R GGCCCGTCTCTCA . 63.0 35.0 79.0 0.0 . 193 . . Atlas-SNP MIIP 60672 hgsc.bcm.edu hg19 1 12082339 12082339 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MIIP NM_021933 exon3 c.A302T p.Q101L AATGCCAGCACCA . 86.0 51.0 128.0 0.0 . 34 . . Atlas-SNP VPS13D 55187 hgsc.bcm.edu hg19 1 12567012 12567012 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . VPS13D NM_015378 exon69 c.A12900G p.L4300L TTTCCTAGAAGTC . 105.0 37.0 130.0 0.0 . 316 . . Atlas-SNP PRAMEF2 65122 hgsc.bcm.edu hg19 1 12921328 12921328 + Silent SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PRAMEF2 NM_023014 exon4 c.G1119C p.L373L TGGCCTGAGCTGC . 161.0 16.0 207.0 0.0 . 85 . . Atlas-SNP PADI1 29943 hgsc.bcm.edu hg19 1 17556654 17556654 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PADI1 NM_013358 exon9 c.A1004T p.K335M ACTGCAAGCTGAC . 50.0 15.0 56.0 0.0 . 77 . . Atlas-SNP PAX7 5081 hgsc.bcm.edu hg19 1 19071418 19071418 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PAX7 NM_001135254 exon9 c.T1513G p.Y505D CAGGCCTACTAGG . 112.0 45.0 131.0 0.0 . 127 . . Atlas-SNP KIF17 57576 hgsc.bcm.edu hg19 1 21013989 21013989 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIF17 NM_001122819 exon8 c.A1830G p.L610L CAGGCCTAGTAAC . 62.0 29.0 65.0 0.0 . 130 . . Atlas-SNP LDLRAD2 401944 hgsc.bcm.edu hg19 1 22141096 22141096 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LDLRAD2 NM_001013693 exon2 c.C291A p.N97K GCTCAACACCTCC . 90.0 47.0 74.0 0.0 . 17 . . Atlas-SNP HNRNPR 10236 hgsc.bcm.edu hg19 1 23637344 23637344 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd HNRPR,mouth,carcinoma,0,2 HNRNPR NM_001102398 exon11 c.G1514T p.R505I CCTCCTCTTCCTC . 50.0 14.0 45.0 0.0 . 56 . . Atlas-SNP CNR2 1269 hgsc.bcm.edu hg19 1 24201051 24201051 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CNR2 NM_001841 exon2 c.A1057G p.R353G GATCTCTGGAATC . 58.0 22.0 50.0 0.0 . 78 . . Atlas-SNP SRRM1 10250 hgsc.bcm.edu hg19 1 24996026 24996026 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SRRM1 NM_005839 exon14 c.A2152G p.T718A CCAAGTACTAGGC . 243.0 115.0 327.0 0.0 . 81 . . Atlas-SNP ZDHHC18 84243 hgsc.bcm.edu hg19 1 27177682 27177682 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZDHHC18 NM_032283 exon6 c.A896T p.H299L GGTTTCACACGTA . 95.0 38.0 111.0 0.0 . 20 . . Atlas-SNP TMEM222 84065 hgsc.bcm.edu hg19 1 27648780 27648780 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMEM222 NM_032125 exon1 c.A92T p.E31V CGGCCGAGACGGA . 182.0 101.0 196.0 0.0 . 16 . . Atlas-SNP RCC1 1104 hgsc.bcm.edu hg19 1 28864505 28864505 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RCC1 NM_001048194 exon11 c.A1345G p.K449E AAGGACAAAGAAC . 37.0 14.0 66.0 0.0 . 61 . . Atlas-SNP COL16A1 1307 hgsc.bcm.edu hg19 1 32161363 32161363 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL16A1 NM_001856 exon10 c.A944T p.E315V CTTACCTCATCGG . 86.0 38.0 130.0 0.0 . 137 . . Atlas-SNP LCK 3932 hgsc.bcm.edu hg19 1 32742349 32742349 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LCK NM_005356 exon9 c.A926T p.Q309L TCACCCAGGAGCC . 45.0 31.0 60.0 0.0 . 124 . . Atlas-SNP ADC 113451 hgsc.bcm.edu hg19 1 33557811 33557811 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADC NM_052998 exon6 c.A440T p.H147L AGAGCCACCCCAG . 166.0 69.0 219.0 0.0 . 38 . . Atlas-SNP PHC2 1912 hgsc.bcm.edu hg19 1 33836103 33836103 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PHC2 NM_198040 exon4 c.T495A p.A165A CTGCTGAGCGATG . 51.0 20.0 56.0 0.0 . 78 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34123600 34123600 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CSMD2 NM_052896 exon27 c.T4273A p.C1425S TCACACAGCTGAT . 52.0 26.0 81.0 0.0 . 946 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34128580 34128580 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CSMD2 NM_052896 exon26 c.A4045T p.K1349X GGTCCTTGGGCAG . 96.0 56.0 136.0 0.0 . 946 . . Atlas-SNP GJA4 2701 hgsc.bcm.edu hg19 1 35259856 35259856 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GJA4 NM_002060 exon2 c.C42A p.V14V CCAGGTCCAGGAG . 79.0 30.0 84.0 0.0 . 25 . . Atlas-SNP AGO1 26523 hgsc.bcm.edu hg19 1 36383941 36383941 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_012199 exon17 c.A2182G p.I728V GGTAACATCCCAG . 108.0 47.0 135.0 0.0 . . . . Atlas-SNP TEKT2 27285 hgsc.bcm.edu hg19 1 36551473 36551473 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TEKT2 NM_014466 exon4 c.A319T p.N107Y GCCAAGAACCTGC . 115.0 43.0 154.0 0.0 . 32 . . Atlas-SNP MTF1 4520 hgsc.bcm.edu hg19 1 38288109 38288109 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MTF1 NM_005955 exon9 c.A1451G p.E484G AGAAACTCTTGAT . 55.0 28.0 81.0 0.0 . 67 . . Atlas-SNP COL9A2 1298 hgsc.bcm.edu hg19 1 40769263 40769263 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd COL9A2,NS,carcinoma,0,1 COL9A2 NM_001852 exon28 c.G1487A p.G496D CGAGGGCCGGGGG . 41.0 20.0 36.0 0.0 . 63 . . Atlas-SNP COL9A2 1298 hgsc.bcm.edu hg19 1 40777173 40777173 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL9A2 NM_001852 exon10 c.T518C p.L173P CTCACCAGGAAAT . 46.0 20.0 65.0 0.0 . 63 . . Atlas-SNP COL9A2 1298 hgsc.bcm.edu hg19 1 40777786 40777786 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL9A2 NM_001852 exon9 c.364-2A>T . GGCCCCTGGGGAG . 63.0 22.0 88.0 0.0 . 63 . . Atlas-SNP HIVEP3 59269 hgsc.bcm.edu hg19 1 41990547 41990547 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HIVEP3 NM_024503 exon6 c.G5242A p.G1748S CGCGGCCTCGCAC . 93.0 46.0 108.0 0.0 . 235 . . Atlas-SNP SZT2 23334 hgsc.bcm.edu hg19 1 43908181 43908181 + Silent SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SZT2 NM_015284 exon57 c.G7872T p.L2624L TCGCCTGGTGCAG . 67.0 28.0 66.0 0.0 . 383 . . Atlas-SNP ERI3 79033 hgsc.bcm.edu hg19 1 44713653 44713653 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ERI3 NM_024066 exon8 c.G889T p.G297C TGAGGCCCTTGTT . 64.0 29.0 74.0 0.0 . 39 . . Atlas-SNP STIL 6491 hgsc.bcm.edu hg19 1 47717102 47717102 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . STIL NM_001048166 exon17 c.A3573G p.A1191A CGTATCTGCGTTG . 85.0 44.0 97.0 0.0 . 91 . . Atlas-SNP SPATA6 54558 hgsc.bcm.edu hg19 1 48764441 48764441 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPATA6 NM_019073 exon13 c.A1411T p.R471W AGTTCCTGTACAT . 79.0 23.0 111.0 0.0 . 45 . . Atlas-SNP EPS15 2060 hgsc.bcm.edu hg19 1 51864724 51864724 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EPS15 NM_001981 exon20 c.A2032G p.N678D TATTGTTGGCTGC . 46.0 21.0 49.0 0.0 . 72 . . Atlas-SNP MROH7 374977 hgsc.bcm.edu hg19 1 55119680 55119680 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001039464 exon3 c.A1081T p.K361X GATGCCAAGGACA . 95.0 53.0 121.0 0.0 . . . . Atlas-SNP MROH7 374977 hgsc.bcm.edu hg19 1 55174688 55174688 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001039464 exon23 c.G3669A p.G1223G TCAAGGGTCCCTG . 46.0 28.0 76.0 0.0 . . . . Atlas-SNP INADL 10207 hgsc.bcm.edu hg19 1 62456026 62456026 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . INADL NM_176877 exon28 c.A3857T p.E1286V GAGATGAACTCTT . 95.0 39.0 76.0 0.0 . 179 . . Atlas-SNP KANK4 163782 hgsc.bcm.edu hg19 1 62733992 62733992 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KANK4 NM_181712 exon5 c.C2198T p.P733L TCCCCAGGCCCAC . 56.0 25.0 73.0 0.0 . 135 . . Atlas-SNP CACHD1 57685 hgsc.bcm.edu hg19 1 65142576 65142576 + Splice_Site SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CACHD1 NM_020925 exon22 c.2823-2A>G . CTGCACAGAAACC . 202.0 90.0 197.0 0.0 . 125 . . Atlas-SNP DNAJC6 9829 hgsc.bcm.edu hg19 1 65852603 65852603 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DNAJC6 NM_001256864 exon8 c.A1104G p.L368L CCGGCTACAGGCT . 118.0 47.0 122.0 0.0 . 104 . . Atlas-SNP SGIP1 84251 hgsc.bcm.edu hg19 1 67148048 67148048 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SGIP1 NM_032291 exon15 c.C1311T p.T437T GACCACCAGTGGT . 159.0 60.0 162.0 0.0 . 272 . . Atlas-SNP IL23R 149233 hgsc.bcm.edu hg19 1 67666515 67666515 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IL23R NM_144701 exon5 c.T587A p.V196D TTTGGGTCCAAGC . 196.0 101.0 203.0 0.0 . 52 . . Atlas-SNP LRRC7 57554 hgsc.bcm.edu hg19 1 70502271 70502271 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd LRRC7,NS,carcinoma,0,1 LRRC7 NM_020794 exon18 c.C2138T p.A713V CAACAGCTAAAGA . 132.0 61.0 115.0 1.0 . 400 . . Atlas-SNP LRRC40 55631 hgsc.bcm.edu hg19 1 70616864 70616864 + Silent SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRRC40 NM_017768 exon13 c.A1464C p.P488P TTCTTCTGGCAAA . 240.0 97.0 244.0 0.0 . 66 . . Atlas-SNP PTGER3 5733 hgsc.bcm.edu hg19 1 71418661 71418661 + Silent SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PTGER3 NM_198718 exon4 c.A1186C p.R396R CTTCTCTGTTCAG . 42.0 13.0 55.0 0.0 . 246 . . Atlas-SNP C1orf173 127254 hgsc.bcm.edu hg19 1 75065565 75065565 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C1orf173 NM_001002912 exon11 c.A1540G p.N514D CTTCATTAGATTT . 110.0 54.0 123.0 0.0 . 380 . . Atlas-SNP LPAR3 23566 hgsc.bcm.edu hg19 1 85331282 85331282 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LPAR3 NM_012152 exon2 c.T522G p.S174S GCAGGCAGAGATG . 98.0 39.0 99.0 0.0 . 53 . . Atlas-SNP SYDE2 84144 hgsc.bcm.edu hg19 1 85647970 85647970 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SYDE2 NM_032184 exon3 c.A2355G p.R785R AAGACCTCTAGGT . 181.0 10.0 209.0 0.0 . 135 . . Atlas-SNP CLCA1 1179 hgsc.bcm.edu hg19 1 86961307 86961307 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CLCA1 NM_001285 exon12 c.G2062T p.V688L CGGAGAGTGATAC . 87.0 43.0 95.0 0.0 . 109 . . Atlas-SNP ZNF644 84146 hgsc.bcm.edu hg19 1 91403139 91403139 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF644 NM_201269 exon4 c.A3591T p.T1197T TCTTGCTGTCTGA . 71.0 27.0 109.0 0.0 . 120 . . Atlas-SNP ZNF644 84146 hgsc.bcm.edu hg19 1 91405810 91405810 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF644 NM_201269 exon3 c.A1101T p.P367P CTTATCTGGGTTA . 90.0 32.0 86.0 0.0 . 120 . . Atlas-SNP ZNF644 84146 hgsc.bcm.edu hg19 1 91406111 91406111 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF644 NM_201269 exon3 c.A800T p.Q267L AGAAATTGAATGA . 79.0 42.0 91.0 0.0 . 120 . . Atlas-SNP HFM1 164045 hgsc.bcm.edu hg19 1 91859872 91859872 + Missense_Mutation SNP T T A rs201897123 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HFM1 NM_001017975 exon4 c.A272T p.Q91L GCAAACTGGAATT . 170.0 71.0 173.0 0.0 . 188 . T|0.999;C|0.001 Atlas-SNP BRDT 676 hgsc.bcm.edu hg19 1 92442752 92442752 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BRDT NM_001242806 exon6 c.T783C p.S261S AGATTCTCAGCAA . 202.0 78.0 238.0 0.0 . 133 . . Atlas-SNP VCAM1 7412 hgsc.bcm.edu hg19 1 101186271 101186271 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . VCAM1 NM_001078 exon2 c.A304T p.R102W GAATCTAGGAAAT . 111.0 52.0 112.0 0.0 . 111 . . Atlas-SNP OLFM3 118427 hgsc.bcm.edu hg19 1 102270334 102270334 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OLFM3 NM_058170 exon6 c.T837C p.N279N TGAGCCATTGTAG . 90.0 45.0 104.0 0.0 . 178 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103461545 103461545 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd COL11A1_ENST00000370096,NS,carcinoma,0,2 COL11A1 NM_080629 exon27 c.G2331A p.K777K CGTTACCTTTACT . 153.0 64.0 181.0 0.0 . 972 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103484377 103484377 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL11A1 NM_080629 exon10 c.T1383A p.P461P TACTGCAGGTCCT . 506.0 252.0 547.0 1.0 . 972 . . Atlas-SNP FAM102B 284611 hgsc.bcm.edu hg19 1 109171192 109171192 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAM102B NM_001010883 exon8 c.A828T p.S276S AGCTTCAGAAAAA . 128.0 65.0 129.0 0.0 . 49 . . Atlas-SNP STXBP3 6814 hgsc.bcm.edu hg19 1 109321954 109321954 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . STXBP3 NM_007269 exon9 c.C731A p.P244H TTGATCCTGTGTC . 96.0 42.0 90.0 0.0 . 44 . . Atlas-SNP WDR47 22911 hgsc.bcm.edu hg19 1 109553760 109553760 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . WDR47 NM_001142550 exon5 c.A929G p.Q310R GCTGATTGAGGTC . 77.0 29.0 101.0 0.0 . 56 . . Atlas-SNP PSRC1 84722 hgsc.bcm.edu hg19 1 109824547 109824547 + Silent SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PSRC1 NM_001032291 exon4 c.A213C p.P71P CTTCTCTGGACTG . 114.0 43.0 136.0 0.0 . 12 . . Atlas-SNP KCNA3 3738 hgsc.bcm.edu hg19 1 111216504 111216504 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KCNA3 NM_002232 exon1 c.C928A p.L310M CCAGCAGTTCGAA . 68.0 33.0 47.0 0.0 . 91 . . Atlas-SNP AMPD1 270 hgsc.bcm.edu hg19 1 115218238 115218238 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AMPD1 NM_000036 exon12 c.A1691T p.Q564L CACTCCTGGGGCT . 58.0 31.0 50.0 0.0 . 223 . . Atlas-SNP CSDE1 7812 hgsc.bcm.edu hg19 1 115275369 115275369 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CSDE1 NM_001242891 exon11 c.A1044T p.K348N CGTATCTTTGTCT . 220.0 106.0 237.0 0.0 . 145 . . Atlas-SNP NGF 4803 hgsc.bcm.edu hg19 1 115829387 115829387 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NGF NM_002506 exon3 c.A30T p.T10T AAAAGCTGTGATC . 63.0 31.0 85.0 0.0 . 43 . . Atlas-SNP CASQ2 845 hgsc.bcm.edu hg19 1 116244009 116244009 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CASQ2 NM_001232 exon11 c.T1053A p.D351E TGGAAGATCGTCA . 97.0 39.0 105.0 0.0 . 54 . . Atlas-SNP NHLH2 4808 hgsc.bcm.edu hg19 1 116380638 116380638 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NHLH2 NM_001111061 exon2 c.T356A p.L119Q AGGCGCAGGATCT . 50.0 19.0 46.0 0.0 . 8 . . Atlas-SNP TTF2 8458 hgsc.bcm.edu hg19 1 117618107 117618107 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTF2 NM_003594 exon5 c.A901T p.I301L CCTAGCATACAGG . 162.0 80.0 157.0 0.0 . 92 . . Atlas-SNP RNF115 27246 hgsc.bcm.edu hg19 1 145663367 145663367 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RNF115 NM_014455 exon4 c.G428C p.G143A TTGAAGGGTGAGT . 125.0 43.0 77.0 0.0 . 27 . . Atlas-SNP CHD1L 9557 hgsc.bcm.edu hg19 1 146747893 146747893 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CHD1L NM_004284 exon14 c.A1511T p.Q504L GAGCCCAGAAACC . 129.0 102.0 76.0 0.0 . 72 . . Atlas-SNP GJA8 2703 hgsc.bcm.edu hg19 1 147380840 147380840 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GJA8 NM_005267 exon2 c.A758T p.H253L CCCTCCACTCCAT . 184.0 136.0 91.0 0.0 . 108 . . Atlas-SNP HIST2H2AC 8338 hgsc.bcm.edu hg19 1 149858769 149858769 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HIST2H2AC NM_003517 exon1 c.G245C p.R82P TCCCTCGTCACCT . 406.0 125.0 220.0 0.0 . 75 . . Atlas-SNP ADAMTSL4 54507 hgsc.bcm.edu hg19 1 150526448 150526448 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAMTSL4 NM_019032 exon6 c.C981A p.R327R GCCCCGCCTGGAG . 102.0 27.0 44.0 0.0 . 101 . . Atlas-SNP BNIPL 149428 hgsc.bcm.edu hg19 1 151018276 151018276 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BNIPL NM_138278 exon8 c.A855G p.L285L CAGGCTACGGAAA . 153.0 54.0 68.0 0.0 . 45 . . Atlas-SNP POGZ 23126 hgsc.bcm.edu hg19 1 151403269 151403269 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . POGZ NM_015100 exon4 c.A332G p.Q111R GGATTCTGGGTCA . 128.0 47.0 61.0 0.0 . 211 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152286887 152286887 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FLG NM_002016 exon3 c.A475G p.K159E TTTCTTTTTTTTC . 111.0 80.0 58.0 0.0 . 900 . . Atlas-SNP LCE2D 353141 hgsc.bcm.edu hg19 1 152636872 152636872 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LCE2D NM_178430 exon2 c.T291C p.S97S ACCTTCTGGGGCC . 137.0 25.0 73.0 0.0 . 26 . . Atlas-SNP SPRR4 163778 hgsc.bcm.edu hg19 1 152944426 152944426 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPRR4 NM_173080 exon2 c.G60T p.Q20H CCAGCAGCAGCAA . 282.0 224.0 148.0 0.0 . 8 . . Atlas-SNP SPRR2F 6705 hgsc.bcm.edu hg19 1 153085091 153085091 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPRR2F NM_001014450 exon2 c.A119G p.K40R GGACACTTTGATG . 83.0 9.0 52.0 0.0 . 12 . . Atlas-SNP NPR1 4881 hgsc.bcm.edu hg19 1 153661567 153661567 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NPR1 NM_000906 exon16 c.C2556T p.I852I CCAGATCCTGCCT . 168.0 125.0 90.0 0.0 . 104 . . Atlas-SNP AQP10 89872 hgsc.bcm.edu hg19 1 154294415 154294415 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AQP10 NM_080429 exon2 c.A112T p.T38S CTCCTCACCCAAG . 271.0 42.0 128.0 0.0 . 44 . . Atlas-SNP ADAR 103 hgsc.bcm.edu hg19 1 154573591 154573591 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAR NM_001111 exon2 c.A1527G p.L509L ATATTCTAACAGC . 204.0 65.0 83.0 0.0 . 113 . . Atlas-SNP CLK2 1196 hgsc.bcm.edu hg19 1 155234093 155234093 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CLK2 NM_003993 exon12 c.1144-2A>T . TGGGTCTGGGAAA . 345.0 239.0 175.0 1.0 . 55 . . Atlas-SNP ASH1L 55870 hgsc.bcm.edu hg19 1 155451023 155451023 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ASH1L NM_018489 exon3 c.A1638G p.P546P ACTGAATGGGGAT . 133.0 26.0 54.0 0.0 . 279 . . Atlas-SNP SYT11 23208 hgsc.bcm.edu hg19 1 155838371 155838371 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SYT11 NM_152280 exon2 c.A650G p.K217R TGCGGAAGACCCT . 219.0 72.0 144.0 0.0 . 55 . . Atlas-SNP BCAN 63827 hgsc.bcm.edu hg19 1 156622305 156622305 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BCAN NM_198427 exon8 c.A1563T p.P521P ATCACCACTTCCT . 125.0 23.0 84.0 0.0 . 174 . . Atlas-SNP FCRL5 83416 hgsc.bcm.edu hg19 1 157488541 157488541 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FCRL5 NM_031281 exon14 c.A2692T p.T898S GATAGGTGGGCTC . 182.0 34.0 96.0 0.0 . 177 . . Atlas-SNP FCRL5 83416 hgsc.bcm.edu hg19 1 157514159 157514159 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FCRL5 NM_031281 exon5 c.A737T p.Q246L GTAATCTGGAAAT . 274.0 198.0 145.0 1.0 . 177 . . Atlas-SNP CD5L 922 hgsc.bcm.edu hg19 1 157803106 157803106 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CD5L NM_005894 exon5 c.T915G p.V305V GCGGCCAACCCCA . 250.0 174.0 146.0 0.0 . 112 . . Atlas-SNP CD5L 922 hgsc.bcm.edu hg19 1 157803162 157803162 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CD5L NM_005894 exon5 c.T859A p.C287S TCCCACAGCCCAG . 227.0 160.0 144.0 0.0 . 112 . . Atlas-SNP OR10Z1 128368 hgsc.bcm.edu hg19 1 158576643 158576643 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR10Z1 NM_001004478 exon1 c.A415T p.T139S AATCCTACCCTCT . 169.0 40.0 107.0 0.0 . 99 . . Atlas-SNP OR10Z1 128368 hgsc.bcm.edu hg19 1 158576656 158576656 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR10Z1 NM_001004478 exon1 c.A428T p.Q143L GTGCCCAGCTGGT . 179.0 138.0 107.0 0.0 . 99 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158627334 158627334 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPTA1 NM_003126 exon19 c.C2738T p.T913I ATCCATGTTTCTG . 162.0 41.0 85.0 0.0 . 720 . . Atlas-SNP OR6K2 81448 hgsc.bcm.edu hg19 1 158669603 158669603 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR6K2 NM_001005279 exon1 c.A840G p.A280A CAAAACTGCAAAG . 408.0 93.0 228.0 0.0 . 104 . . Atlas-SNP OR6K2 81448 hgsc.bcm.edu hg19 1 158669632 158669632 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR6K2 NM_001005279 exon1 c.T811A p.W271R TATCCCAGAACAA . 415.0 167.0 218.0 0.0 . 104 . . Atlas-SNP AIM2 9447 hgsc.bcm.edu hg19 1 159038418 159038418 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AIM2 NM_004833 exon3 c.A336T p.A112A GATGGCTGCAGAT . 162.0 108.0 84.0 0.0 . 70 . . Atlas-SNP ATP1A2 477 hgsc.bcm.edu hg19 1 160097597 160097597 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATP1A2 NM_000702 exon8 c.T1004A p.L335Q GGCTTCTGGCCAC . 107.0 77.0 56.0 0.0 . 167 . . Atlas-SNP ATP1A4 480 hgsc.bcm.edu hg19 1 160144010 160144010 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATP1A4 NM_144699 exon14 c.C2101A p.P701T ACCTCCCCTCAGC . 329.0 236.0 196.0 0.0 . 167 . . Atlas-SNP SLAMF1 6504 hgsc.bcm.edu hg19 1 160582368 160582368 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLAMF1 NM_003037 exon6 c.T867C p.P289P CTGAAGAGGCTAC . 101.0 67.0 40.0 0.0 . 74 . . Atlas-SNP LY9 4063 hgsc.bcm.edu hg19 1 160784286 160784286 + Silent SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LY9 NM_001261457 exon4 c.T807G p.L269L GCCACTTGCACTC . 190.0 138.0 122.0 0.0 . 115 . . Atlas-SNP PVRL4 81607 hgsc.bcm.edu hg19 1 161044159 161044159 + Silent SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PVRL4 NM_030916 exon6 c.C1005A p.P335P TTCCTGGGGGTCT . 182.0 38.0 112.0 0.0 . 48 . . Atlas-SNP FCRLA 84824 hgsc.bcm.edu hg19 1 161682966 161682966 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FCRLA NM_001184866 exon6 c.T945A p.P315P TGGGCCTCTGCCT . 161.0 118.0 91.0 0.0 . 101 . . Atlas-SNP DUSP27 92235 hgsc.bcm.edu hg19 1 167096996 167096996 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DUSP27 NM_001080426 exon5 c.A2628T p.E876D CAAGGAAGATGAG . 100.0 73.0 60.0 0.0 . 235 . . Atlas-SNP F5 2153 hgsc.bcm.edu hg19 1 169521814 169521814 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . F5 NM_000130 exon8 c.A1277T p.Q426L CTGACCTGGGCTC . 184.0 138.0 116.0 0.0 . 301 . . Atlas-SNP SELP 6403 hgsc.bcm.edu hg19 1 169586539 169586539 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SELP NM_003005 exon3 c.A208T p.I70F TCTGGATGGCCAC . 210.0 34.0 107.0 0.0 . 132 . . Atlas-SNP FMO2 2327 hgsc.bcm.edu hg19 1 171174726 171174726 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FMO2 NM_001460 exon7 c.T1136C p.F379S CCATTTTCCCAAC . 116.0 80.0 76.0 0.0 . 66 . . Atlas-SNP PRRC2C 23215 hgsc.bcm.edu hg19 1 171510057 171510057 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_015172 exon16 c.A3446T p.E1149V TTATAGAGAGGCC . 338.0 74.0 186.0 0.0 . . . . Atlas-SNP MYOC 4653 hgsc.bcm.edu hg19 1 171605647 171605647 + Nonsense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYOC NM_000261 exon3 c.C933G p.Y311X AGAAGGGTAGCCC . 138.0 22.0 71.0 0.0 . 69 . . Atlas-SNP METTL13 51603 hgsc.bcm.edu hg19 1 171759656 171759656 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . METTL13 NM_015935 exon5 c.A1374T p.A458A CCCTGCAGCCCCG . 500.0 336.0 319.0 0.0 . 67 . . Atlas-SNP ASTN1 460 hgsc.bcm.edu hg19 1 177001594 177001594 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ASTN1 NM_004319 exon3 c.C863T p.P288L CCACCTGGTGTGA . 68.0 23.0 32.0 0.0 . 314 . . Atlas-SNP FAM5B 57795 hgsc.bcm.edu hg19 1 177226313 177226313 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAM5B NM_021165 exon4 c.A462G p.G154G CATAGGAGAAGAG . 309.0 234.0 191.0 0.0 . 191 . . Atlas-SNP SEC16B 89866 hgsc.bcm.edu hg19 1 177906378 177906378 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SEC16B NM_033127 exon19 c.A2474G p.E825G ATTTCCTCCCAGA . 96.0 65.0 53.0 0.0 . 92 . . Atlas-SNP STX6 10228 hgsc.bcm.edu hg19 1 180953835 180953835 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . STX6 NM_005819 exon7 c.A669G p.A223A TACTTTTGCAAGT . 114.0 74.0 73.0 0.0 . 21 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181680158 181680158 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CACNA1E NM_001205293 exon8 c.A1124T p.Q375L AGCAGCAGATTGA . 75.0 29.0 43.0 0.0 . 778 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181767600 181767600 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CACNA1E NM_001205293 exon48 c.A6572T p.E2191V GCGAGGAGGGCTC . 82.0 22.0 54.0 0.0 . 778 . . Atlas-SNP LAMC1 3915 hgsc.bcm.edu hg19 1 183102629 183102629 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LAMC1 NM_002293 exon22 c.G3793T p.V1265L AAAGCTGTGGAGA . 165.0 45.0 86.0 0.0 . 176 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 185902889 185902889 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HMCN1 NM_031935 exon11 c.A1761T p.G587G TGCTGGAGAGTAT . 134.0 31.0 72.0 0.0 . 797 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186092186 186092186 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HMCN1 NM_031935 exon81 c.A12333G p.T4111T CATTACATGGCAT . 131.0 44.0 63.0 0.0 . 797 . . Atlas-SNP TPR 7175 hgsc.bcm.edu hg19 1 186291450 186291450 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TPR NM_003292 exon45 c.A6461T p.H2154L ACTTACTGAATTG . 459.0 98.0 252.0 0.0 . 441 . . Atlas-SNP TPR 7175 hgsc.bcm.edu hg19 1 186324666 186324666 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TPR NM_003292 exon17 c.A2047C p.K683Q CTTTTTTGTAGTT . 202.0 10.0 93.0 0.0 . 441 . . Atlas-SNP TPR 7175 hgsc.bcm.edu hg19 1 186327705 186327705 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TPR NM_003292 exon13 c.G1467C p.M489I TATTTCCATTCTT . 120.0 79.0 78.0 0.0 . 441 . . Atlas-SNP PTGS2 5743 hgsc.bcm.edu hg19 1 186645249 186645249 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PTGS2 NM_000963 exon8 c.A1038G p.K346K GTCAAATTTCAGT . 214.0 147.0 129.0 0.0 . 144 . . Atlas-SNP UCHL5 51377 hgsc.bcm.edu hg19 1 192993077 192993077 + Splice_Site SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd UCHL5,NS,carcinoma,0,1 UCHL5 NM_015984 exon9 c.630-1G>T . CTGTACCTAGAAG . 132.0 45.0 52.0 0.0 . 41 . . Atlas-SNP TROVE2 6738 hgsc.bcm.edu hg19 1 193045014 193045014 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TROVE2 NM_004600 exon3 c.A645G p.E215E TAAAGAAAAAGCA . 330.0 104.0 161.0 0.0 . 50 . . Atlas-SNP NEK7 140609 hgsc.bcm.edu hg19 1 198233311 198233311 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NEK7 NM_133494 exon5 c.A318G p.E106E TAATGAACTAAAC . 194.0 158.0 362.0 0.0 . 42 . . Atlas-SNP C1orf106 55765 hgsc.bcm.edu hg19 1 200877954 200877954 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C1orf106 NM_018265 exon7 c.C968T p.P323L CAGGACCTGAGGC . 157.0 13.0 291.0 0.0 . 59 . . Atlas-SNP LGR6 59352 hgsc.bcm.edu hg19 1 202287908 202287908 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LGR6 NM_001017403 exon18 c.T2477A p.L826Q CACTGCTGTACCT . 16.0 15.0 50.0 0.0 . 102 . . Atlas-SNP SLC26A9 115019 hgsc.bcm.edu hg19 1 205884091 205884091 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC26A9 NM_134325 exon22 c.T2593C p.Y865H GCTTGTACAGCAG . 40.0 35.0 110.0 0.0 . 176 . . Atlas-SNP SLC26A9 115019 hgsc.bcm.edu hg19 1 205897161 205897161 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC26A9 NM_134325 exon9 c.T970A p.S324T CAGGCGACACCGG . 32.0 28.0 58.0 0.0 . 176 . . Atlas-SNP CR1 1378 hgsc.bcm.edu hg19 1 207741308 207741308 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CR1 NM_000651 exon25 c.A4092G p.G1364G CATTGGAGAGAGC . 143.0 108.0 258.0 0.0 . 354 . . Atlas-SNP RCOR3 55758 hgsc.bcm.edu hg19 1 211447593 211447593 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RCOR3 NM_001136223 exon4 c.A343G p.N115D GGCTACAATGTGG . 201.0 158.0 417.0 0.0 . 51 . . Atlas-SNP RPS6KC1 26750 hgsc.bcm.edu hg19 1 213303010 213303010 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RPS6KC1 NM_012424 exon6 c.G613T p.G205W GCACTAGGGGCTG . 39.0 27.0 89.0 0.0 . 114 . . Atlas-SNP CENPF 1063 hgsc.bcm.edu hg19 1 214818921 214818921 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CENPF NM_016343 exon13 c.A6008T p.Q2003L GCATTCAGGTGGC . 73.0 60.0 134.0 0.0 . 321 . . Atlas-SNP USH2A 7399 hgsc.bcm.edu hg19 1 216373134 216373134 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . USH2A NM_007123 exon17 c.T3646A p.Y1216N AATCGTACTTGGC . 83.0 67.0 147.0 1.0 . 1168 . . Atlas-SNP ITPKB 3707 hgsc.bcm.edu hg19 1 226835068 226835068 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ITPKB NM_002221 exon4 c.A2046T p.A682A GGCAGCTGCCTTG . 17.0 15.0 44.0 0.0 . 158 . . Atlas-SNP URB2 9816 hgsc.bcm.edu hg19 1 229773082 229773082 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . URB2 NM_014777 exon4 c.A2722T p.S908C CTGGACAGCCTCT . 33.0 31.0 59.0 0.0 . 152 . . Atlas-SNP SIPA1L2 57568 hgsc.bcm.edu hg19 1 232577103 232577103 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SIPA1L2 NM_020808 exon12 c.T3576A p.G1192G ATAGGAACCCAGG . 20.0 20.0 32.0 0.0 . 218 . . Atlas-SNP PCNXL2 80003 hgsc.bcm.edu hg19 1 233353792 233353792 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCNXL2 NM_014801 exon11 c.G2643T p.Q881H GGAGTACTGGCAG . 79.0 69.0 153.0 0.0 . 204 . . Atlas-SNP GGPS1 9453 hgsc.bcm.edu hg19 1 235505654 235505654 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GGPS1 NM_001037277 exon4 c.G470A p.G157E TGTTTGGATTAGC . 55.0 46.0 114.0 0.0 . 23 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237872815 237872815 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RYR2 NM_001035 exon70 c.A10178T p.E3393V AAGCAGAGGAGCT . 36.0 25.0 68.0 0.0 . 1273 . . Atlas-SNP SDCCAG8 10806 hgsc.bcm.edu hg19 1 243433405 243433405 + Splice_Site SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SDCCAG8 NM_006642 exon2 c.68-2A>C . TCTTGCAGAACAT . 30.0 27.0 69.0 0.0 . 73 . . Atlas-SNP ZNF669 79862 hgsc.bcm.edu hg19 1 247264199 247264199 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF669 NM_024804 exon4 c.G872T p.G291V CAAGAACCGGAAA . 27.0 20.0 72.0 0.0 . 46 . . Atlas-SNP PXDN 7837 hgsc.bcm.edu hg19 2 1667460 1667460 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PXDN NM_012293 exon12 c.A1484T p.H495L TGGTCGTGGAGGG . 51.0 25.0 56.0 0.0 . 255 . . Atlas-SNP ADAM17 6868 hgsc.bcm.edu hg19 2 9668050 9668050 + Missense_Mutation SNP T T G rs34431503 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAM17 NM_003183 exon5 c.A484C p.K162Q TTCTTTTGTCTTT . 75.0 41.0 83.0 0.0 . 61 . T|0.996;C|0.004 Atlas-SNP ROCK2 9475 hgsc.bcm.edu hg19 2 11375944 11375944 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ROCK2 NM_004850 exon5 c.G607A p.D203N TTGCATCCAGAGC . 185.0 95.0 204.0 1.0 . 224 . . Atlas-SNP NBAS 51594 hgsc.bcm.edu hg19 2 15679482 15679482 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd NBAS,NS,adenocarcinoma,0,1 NBAS NM_015909 exon8 c.380-2A>T . CGGAACTAGAACA . 104.0 39.0 112.0 0.0 . 246 . . Atlas-SNP GEN1 348654 hgsc.bcm.edu hg19 2 17959314 17959314 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GEN1 NM_182625 exon12 c.A1248T p.I416I TGAAATAGAATGG . 290.0 145.0 276.0 0.0 . 79 . . Atlas-SNP NT5C1B-RDH14 100526794 hgsc.bcm.edu hg19 2 18736712 18736712 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001199103 exon9 c.A1698G p.T566T CAGATTTGTCCGT . 140.0 65.0 160.0 0.0 . . . . Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21231036 21231036 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . APOB NM_000384 exon26 c.A8704T p.S2902C CCTGACTAGAGAA . 107.0 49.0 106.0 0.0 . 761 . . Atlas-SNP OTOF 9381 hgsc.bcm.edu hg19 2 26699020 26699020 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OTOF NM_194248 exon23 c.C2842T p.P948S CGGGTGGGAAGGC . 49.0 18.0 44.0 0.0 . 524 . . Atlas-SNP C2orf71 388939 hgsc.bcm.edu hg19 2 29296302 29296302 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C2orf71 NM_001029883 exon1 c.A826T p.S276C GCTTGCTGACTGT . 53.0 22.0 60.0 0.0 . 146 . . Atlas-SNP CAPN13 92291 hgsc.bcm.edu hg19 2 30966296 30966296 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CAPN13 NM_144575 exon13 c.A1398T p.S466S CTCCGCTGATTTT . 104.0 44.0 132.0 0.0 . 70 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32726807 32726807 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BIRC6 NM_016252 exon47 c.A9059C p.H3020P CTAAACATGAAAA . 88.0 28.0 94.0 0.0 . 838 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32750644 32750644 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BIRC6 NM_016252 exon59 c.A11869C p.N3957H GCTGCCAACAAAA . 112.0 37.0 109.0 0.0 . 838 . . Atlas-SNP TTC27 55622 hgsc.bcm.edu hg19 2 32891805 32891805 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTC27 NM_017735 exon7 c.A909T p.P303P CACTCCAGCACCC . 54.0 28.0 107.0 0.0 . 71 . . Atlas-SNP VIT 5212 hgsc.bcm.edu hg19 2 36982076 36982076 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . VIT NM_001177969 exon5 c.T288A p.D96E GCTTGATAATTCA . 99.0 39.0 97.0 0.0 . 138 . . Atlas-SNP VIT 5212 hgsc.bcm.edu hg19 2 37035640 37035640 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . VIT NM_053276 exon15 c.A1415G p.Y472C GCTTCTACTCGCT . 105.0 43.0 157.0 0.0 . 138 . . Atlas-SNP SIX2 10736 hgsc.bcm.edu hg19 2 45235999 45235999 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SIX2 NM_016932 exon1 c.A251T p.Q84L AGCTGCTGCAGCT . 47.0 17.0 48.0 0.0 . 39 . . Atlas-SNP TMEM247 388946 hgsc.bcm.edu hg19 2 46706740 46706740 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001145051 exon1 c.A16G p.R6G GAGGACAGGGAGA . 102.0 42.0 119.0 0.0 . . . . Atlas-SNP MCFD2 90411 hgsc.bcm.edu hg19 2 47134956 47134956 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MCFD2 NM_001171506 exon4 c.A302G p.H101R TCCTTATGGACAT . 36.0 18.0 46.0 0.0 . 13 . . Atlas-SNP FSHR 2492 hgsc.bcm.edu hg19 2 49190265 49190265 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FSHR NM_000145 exon10 c.T1695C p.S565S GTCACTAGAGGAG . 76.0 36.0 85.0 0.0 . 164 . . Atlas-SNP NRXN1 9378 hgsc.bcm.edu hg19 2 50463975 50463975 + Silent SNP C C A rs200816799 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NRXN1 NM_001135659 exon19 c.G3618T p.V1206V CACTCGCACCAAT . 139.0 56.0 144.0 0.0 . 1118 . . Atlas-SNP SPTBN1 6711 hgsc.bcm.edu hg19 2 54874335 54874335 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPTBN1 NM_003128 exon24 c.C4934A p.A1645E ACTATGCAGAGAC . 58.0 26.0 77.0 0.0 . 378 . . Atlas-SNP MTIF2 4528 hgsc.bcm.edu hg19 2 55479663 55479663 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MTIF2 NM_002453 exon8 c.G791T p.G264V ATCACTCCATCAT . 171.0 85.0 143.0 0.0 . 64 . . Atlas-SNP PNPT1 87178 hgsc.bcm.edu hg19 2 55910944 55910944 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PNPT1 NM_033109 exon5 c.A429T p.P143P GCCAGCTGGAAAG . 281.0 125.0 335.0 1.0 . 68 . . Atlas-SNP ANTXR1 84168 hgsc.bcm.edu hg19 2 69304560 69304560 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ANTXR1 NM_032208 exon8 c.T582C p.S194S GGACAGTAAGGAT . 63.0 26.0 78.0 0.0 . 128 . . Atlas-SNP DYSF 8291 hgsc.bcm.edu hg19 2 71780941 71780941 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DYSF NM_001130982 exon22 c.C2031T p.C677C AGGGTGCCACTAC . 53.0 21.0 49.0 0.0 . 536 . . Atlas-SNP SEMA4F 10505 hgsc.bcm.edu hg19 2 74907007 74907007 + Nonsense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SEMA4F NM_004263 exon14 c.G1984T p.G662X GGGGCGGGACTGG . 57.0 22.0 70.0 0.0 . 89 . . Atlas-SNP LRRTM1 347730 hgsc.bcm.edu hg19 2 80529619 80529619 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd LRRTM1,NS,carcinoma,0,1 LRRTM1 NM_178839 exon2 c.G1326T p.V442V CAGGACCACGATG . 27.0 10.0 37.0 0.0 . 251 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84954900 84954900 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DNAH6 NM_001370 exon61 c.A10080G p.R3360R TTCAAGAGGACTT . 77.0 35.0 77.0 0.0 . 194 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 85024758 85024758 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DNAH6 NM_001370 exon70 c.T11457A p.H3819Q AATGCATGAAAAT . 57.0 33.0 65.0 0.0 . 194 . . Atlas-SNP ASTL 431705 hgsc.bcm.edu hg19 2 96795631 96795631 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ASTL NM_001002036 exon8 c.C806T p.A269V TCCGAGGCACTCA . 117.0 54.0 130.0 0.0 . 59 . . Atlas-SNP SNRNP200 23020 hgsc.bcm.edu hg19 2 96966755 96966755 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SNRNP200 NM_014014 exon5 c.A611G p.Q204R TCAAACTGCACAT . 132.0 53.0 119.0 0.0 . 195 . . Atlas-SNP FER1L5 90342 hgsc.bcm.edu hg19 2 97315365 97315365 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FER1L5 NM_001113382 exon5 c.T345C p.T115T GTGTACTGTCACC . 74.0 28.0 76.0 0.0 . 113 . . Atlas-SNP VWA3B 200403 hgsc.bcm.edu hg19 2 98866838 98866838 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . VWA3B NM_144992 exon20 c.C2731G p.Q911E AACCCCCAAGGAG . 82.0 40.0 127.0 0.0 . 138 . . Atlas-SNP CNGA3 1261 hgsc.bcm.edu hg19 2 98994248 98994248 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CNGA3 NM_001298 exon3 c.G200T p.G67V TCACCGGCCAGGG . 70.0 27.0 80.0 0.0 . 118 . . Atlas-SNP INPP4A 3631 hgsc.bcm.edu hg19 2 99182502 99182502 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . INPP4A NM_001134224 exon22 c.A2305G p.N769D GGGTTTAACGTGC . 64.0 29.0 72.0 0.0 . 205 . . Atlas-SNP MRPL30 51263 hgsc.bcm.edu hg19 2 99812077 99812077 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MRPL30 NM_145212 exon6 c.A395G p.E132G CAGAGGAGAACAT . 127.0 59.0 142.0 0.0 . 20 . . Atlas-SNP NPAS2 4862 hgsc.bcm.edu hg19 2 101587535 101587535 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NPAS2 NM_002518 exon12 c.A1139T p.K380M CACTAAAGGTACG . 91.0 35.0 96.0 0.0 . 88 . . Atlas-SNP NPAS2 4862 hgsc.bcm.edu hg19 2 101594175 101594175 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NPAS2 NM_002518 exon15 c.C1396G p.P466A CAGGCCCCTCTGC . 61.0 15.0 75.0 0.0 . 88 . . Atlas-SNP SH3RF3 344558 hgsc.bcm.edu hg19 2 110053581 110053581 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SH3RF3 NM_001099289 exon7 c.G1807T p.A603S AGCCAAGCCCGGA . 155.0 56.0 189.0 0.0 . 62 . . Atlas-SNP SH3RF3 344558 hgsc.bcm.edu hg19 2 110259210 110259210 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SH3RF3 NM_001099289 exon10 c.A2611G p.T871A GGCCGCACAGGCC . 32.0 12.0 46.0 0.0 . 62 . . Atlas-SNP CKAP2L 150468 hgsc.bcm.edu hg19 2 113518343 113518343 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CKAP2L NM_152515 exon4 c.105-2A>T . AAGGCCTATAAAA . 269.0 114.0 335.0 1.0 . 54 . . Atlas-SNP IL1B 3553 hgsc.bcm.edu hg19 2 113593196 113593196 + Splice_Site SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IL1B NM_000576 exon4 c.48-2A>G . TGCCACTGTAATA . 51.0 23.0 79.0 0.0 . 35 . . Atlas-SNP EN1 2019 hgsc.bcm.edu hg19 2 119600649 119600649 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EN1 NM_001426 exon2 c.G1044T p.K348N CCAGATCTTGATC . 44.0 18.0 53.0 0.0 . 33 . . Atlas-SNP CNTNAP5 129684 hgsc.bcm.edu hg19 2 125175023 125175023 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CNTNAP5 NM_130773 exon4 c.T385A p.F129I CAGACCTTTGCAG . 65.0 35.0 94.0 0.0 . 405 . . Atlas-SNP SMPD4 55627 hgsc.bcm.edu hg19 2 130939136 130939136 + Silent SNP T T A rs369506878 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SMPD4 NM_017751 exon1 c.A39T p.P13P CAGAGATGGAAGC . 63.0 32.0 82.0 0.0 . 67 . . Atlas-SNP FAM168B 130074 hgsc.bcm.edu hg19 2 131813019 131813019 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAM168B NM_001009993 exon5 c.G301A p.G101S ACGTGCCTTGCTG . 111.0 48.0 117.0 0.0 . 15 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141528495 141528495 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRP1B NM_018557 exon34 c.T5581A p.C1861S CTGTACACATACA . 66.0 18.0 96.0 0.0 . 1315 . . Atlas-SNP KIF5C 3800 hgsc.bcm.edu hg19 2 149633250 149633250 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIF5C NM_004522 exon1 c.G64A p.E22K GAAGCGGAGATCC . 208.0 98.0 221.0 1.0 . 166 . . Atlas-SNP NEB 4703 hgsc.bcm.edu hg19 2 152466569 152466569 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NEB NM_001271208 exon81 c.T12084C p.D4028D GGGATCATCTTCA . 64.0 26.0 78.0 0.0 . 1697 . . Atlas-SNP SLC4A10 57282 hgsc.bcm.edu hg19 2 162813739 162813739 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC4A10 NM_001178015 exon20 c.A2782T p.S928C ATGACCAGTATTC . 82.0 29.0 101.0 0.0 . 309 . . Atlas-SNP DPP4 1803 hgsc.bcm.edu hg19 2 162851476 162851476 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DPP4 NM_001935 exon25 c.G2194T p.A732S CCATTGCCTGGAA . 183.0 89.0 203.0 0.0 . 90 . . Atlas-SNP SCN7A 6332 hgsc.bcm.edu hg19 2 167298134 167298134 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SCN7A NM_002976 exon14 c.A1929G p.A643A GCCGAATGCAGCA . 176.0 80.0 231.0 1.0 . 410 . . Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 170063518 170063518 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRP2 NM_004525 exon39 c.G6712A p.G2238S CCAAGCCCCGTGG . 150.0 65.0 152.0 0.0 . 751 . . Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 170097673 170097673 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRP2 NM_004525 exon25 c.T3870C p.C1290C CCGATCACAGAGC . 99.0 48.0 94.0 0.0 . 751 . . Atlas-SNP BBS5 129880 hgsc.bcm.edu hg19 2 170354147 170354147 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BBS5 NM_152384 exon8 c.A629G p.K210R CAATAAAGATTAG . 262.0 13.0 304.0 0.0 . 27 . . Atlas-SNP PHOSPHO2 493911 hgsc.bcm.edu hg19 2 170557709 170557709 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PHOSPHO2 NM_001199286 exon4 c.A228T p.P76P CACTCCAGGGATG . 103.0 51.0 118.0 0.0 . 27 . . Atlas-SNP UBR3 130507 hgsc.bcm.edu hg19 2 170806488 170806488 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UBR3 NM_172070 exon23 c.T3458C p.I1153T GCATCATTGAAGA . 134.0 58.0 163.0 0.0 . 182 . . Atlas-SNP MYO3B 140469 hgsc.bcm.edu hg19 2 171243724 171243724 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYO3B NM_001083615 exon14 c.T1483C p.Y495H GGAAAATATCTGG . 99.0 52.0 102.0 0.0 . 320 . . Atlas-SNP MYO3B 140469 hgsc.bcm.edu hg19 2 171260905 171260905 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYO3B NM_001083615 exon20 c.T2426A p.L809Q AGACCCTGGTTGG . 100.0 46.0 120.0 0.0 . 320 . . Atlas-SNP HNRNPA3 220988 hgsc.bcm.edu hg19 2 178081594 178081594 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HNRNPA3 NM_194247 exon7 c.A746G p.Y249C GAGGCTATGGTGG . 45.0 20.0 43.0 0.0 . 42 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179398439 179398439 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd TTN_ENST00000359218,NS,carcinoma,0,5 TTN NM_001267550 exon358 c.T102903A p.G34301G ATTGTCACCTGGT . 64.0 33.0 76.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179401059 179401059 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTN NM_001267550 exon357 c.T100415A p.L33472Q CCACCTAGATTTT . 71.0 45.0 97.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179477140 179477140 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTN NM_001267550 exon266 c.T50112A p.T16704T CTTGACAGTGGTA . 69.0 37.0 84.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179482943 179482943 + Missense_Mutation SNP T T A rs368988689 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTN NM_001267550 exon252 c.A47242T p.N15748Y CAGGATTGTCAGT . 81.0 37.0 87.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179584711 179584711 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTN NM_001267550 exon81 c.A23658T p.L7886L CTAACCTAGTACA . 65.0 25.0 87.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179590678 179590678 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTN NM_001267550 exon70 c.G20371A p.E6791K CCACCTCAAACGG . 125.0 56.0 167.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179594257 179594257 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTN NM_001267550 exon64 c.A18626T p.E6209V ACTACCTCCACAG . 69.0 30.0 57.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179644181 179644181 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTN NM_001267550 exon23 c.T3738A p.H1246Q AGAAATATGGAAT . 96.0 39.0 133.0 0.0 . 18412 . . Atlas-SNP ZNF385B 151126 hgsc.bcm.edu hg19 2 180311266 180311266 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF385B NM_152520 exon7 c.A902T p.E301V TGTGCCTCTAGCT . 67.0 23.0 81.0 0.0 . 68 . . Atlas-SNP ITGA4 3676 hgsc.bcm.edu hg19 2 182339916 182339916 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ITGA4 NM_000885 exon4 c.T457G p.Y153D ATATTTTACATAA . 125.0 55.0 115.0 0.0 . 142 . . Atlas-SNP CERKL 375298 hgsc.bcm.edu hg19 2 182413408 182413408 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CERKL NM_001030311 exon8 c.A1150T p.K384X CTTACTTAAGTTT . 191.0 82.0 225.0 0.0 . 138 . . Atlas-SNP NEUROD1 4760 hgsc.bcm.edu hg19 2 182543118 182543118 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NEUROD1 NM_002500 exon2 c.T470C p.L157P GAGCGCAGGATCT . 63.0 29.0 62.0 0.0 . 67 . . Atlas-SNP FSIP2 401024 hgsc.bcm.edu hg19 2 186671974 186671974 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FSIP2 NM_173651 exon17 c.A18208G p.K6070E GAATCTAAGGATG . 98.0 38.0 91.0 0.0 . 251 . . Atlas-SNP COL3A1 1281 hgsc.bcm.edu hg19 2 189864285 189864285 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL3A1 NM_000090 exon31 c.T2211A p.P737P AAGTCCTGGTCCA . 48.0 25.0 43.0 0.0 . 292 . . Atlas-SNP SDPR 8436 hgsc.bcm.edu hg19 2 192711467 192711467 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SDPR NM_004657 exon1 c.T185A p.L62Q TTGTCCAGGAGCG . 77.0 38.0 90.0 0.0 . 67 . . Atlas-SNP RFTN2 130132 hgsc.bcm.edu hg19 2 198540055 198540055 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RFTN2 NM_144629 exon1 c.T128A p.F43Y AGAGTAAAATCCA . 71.0 28.0 107.0 0.0 . 68 . . Atlas-SNP AOX1 316 hgsc.bcm.edu hg19 2 201469552 201469552 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AOX1 NM_001159 exon9 c.A803G p.N268S TGGGAAACACCTC . 71.0 29.0 102.0 0.0 . 152 . . Atlas-SNP CDK15 65061 hgsc.bcm.edu hg19 2 202672587 202672587 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CDK15 NM_001261435 exon3 c.A280T p.S94C AGGAAGAGCCTCC . 53.0 27.0 54.0 0.0 . 66 . . Atlas-SNP ALS2CR8 79800 hgsc.bcm.edu hg19 2 203834660 203834660 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ALS2CR8 NM_024744 exon11 c.A972G p.V324V AAAGGTACAGAAG . 200.0 108.0 256.0 0.0 . 56 . . Atlas-SNP ADAM23 8745 hgsc.bcm.edu hg19 2 207346034 207346034 + Splice_Site SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAM23 NM_003812 exon3 c.509+2T>C . AACAAGTGAGTAT . 241.0 112.0 238.0 0.0 . 239 . . Atlas-SNP ADAM23 8745 hgsc.bcm.edu hg19 2 207424750 207424750 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAM23 NM_003812 exon11 c.T1077A p.I359I TCAGATTGACATC . 60.0 21.0 87.0 0.0 . 239 . . Atlas-SNP ADAM23 8745 hgsc.bcm.edu hg19 2 207436495 207436495 + Silent SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAM23 NM_003812 exon17 c.G1611T p.G537G CAACGGGGCTCAC . 50.0 18.0 45.0 0.0 . 239 . . Atlas-SNP C2orf80 389073 hgsc.bcm.edu hg19 2 209047758 209047758 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C2orf80 NM_001099334 exon4 c.T137C p.L46S ATGGCCAAGTCAT . 77.0 33.0 103.0 0.0 . 19 . . Atlas-SNP PTH2R 5746 hgsc.bcm.edu hg19 2 209345825 209345825 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PTH2R NM_005048 exon10 c.A1012T p.R338X ACGGTTAGAGTTC . 178.0 69.0 181.0 0.0 . 92 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210843330 210843330 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UNC80 NM_032504 exon58 c.C8818A p.R2940S ATGTCCCGCTCTA . 111.0 52.0 155.0 0.0 . 280 . . Atlas-SNP MARCH4 57574 hgsc.bcm.edu hg19 2 217124264 217124264 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MARCH4 NM_020814 exon4 c.G1004T p.R335L GAGGTCCGGGGGT . 89.0 34.0 114.0 0.0 . 50 . . Atlas-SNP TNS1 7145 hgsc.bcm.edu hg19 2 218713037 218713037 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TNS1 NM_022648 exon17 c.G1828T p.A610S CATGGGCATAGTG . 91.0 32.0 100.0 0.0 . 251 . . Atlas-SNP TTLL4 9654 hgsc.bcm.edu hg19 2 219609870 219609870 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTLL4 NM_014640 exon6 c.A1700T p.H567L CCAATCATGAGAA . 116.0 43.0 152.0 0.0 . 96 . . Atlas-SNP DES 1674 hgsc.bcm.edu hg19 2 220285630 220285630 + Missense_Mutation SNP C C A rs375238266 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DES NM_001927 exon5 c.C978A p.H326Q CCGACACCAGATC . 61.0 26.0 68.0 0.0 . 53 . . Atlas-SNP SPEG 10290 hgsc.bcm.edu hg19 2 220342465 220342465 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPEG NM_005876 exon21 c.G4784T p.R1595M GAGGAAGGAGACT . 75.0 29.0 91.0 0.0 . 272 . . Atlas-SNP CHPF 79586 hgsc.bcm.edu hg19 2 220406616 220406616 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CHPF NM_024536 exon2 c.A610T p.T204S CCTCGGTGTAGGT . 55.0 25.0 77.0 0.0 . 56 . . Atlas-SNP CCDC140 151278 hgsc.bcm.edu hg19 2 223168828 223168828 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCDC140 NM_153038 exon2 c.A207T p.P69P GGGGCCAAGCCCG . 231.0 116.0 281.0 0.0 . 20 . . Atlas-SNP DOCK10 55619 hgsc.bcm.edu hg19 2 225635277 225635277 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DOCK10 NM_014689 exon54 c.T6290G p.L2097W TCCTTCAAAAGCT . 95.0 37.0 106.0 0.0 . 308 . . Atlas-SNP COL4A4 1286 hgsc.bcm.edu hg19 2 227875174 227875174 + Silent SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL4A4 NM_000092 exon46 c.C4377A p.G1459G TCCAGGGCCAAAC . 135.0 64.0 144.0 0.0 . 215 . . Atlas-SNP AGFG1 3267 hgsc.bcm.edu hg19 2 228398301 228398301 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AGFG1 NM_001135187 exon8 c.A923T p.H308L TTGCTCATTTTGA . 86.0 39.0 109.0 0.0 . 80 . . Atlas-SNP DAW1 164781 hgsc.bcm.edu hg19 2 228762991 228762991 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_178821 exon6 c.A534T p.A178A TACAGCAGAAATA . 384.0 143.0 451.0 0.0 . . . . Atlas-SNP SLC16A14 151473 hgsc.bcm.edu hg19 2 230911189 230911189 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC16A14 NM_152527 exon4 c.C653A p.P218Q TCGTTTGGGTTTT . 107.0 51.0 114.0 0.0 . 75 . . Atlas-SNP CAB39 51719 hgsc.bcm.edu hg19 2 231655654 231655654 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CAB39 NM_001130849 exon3 c.A182T p.E61V AAAAAGAGCCTCA . 152.0 60.0 178.0 0.0 . 30 . . Atlas-SNP PSMD1 5707 hgsc.bcm.edu hg19 2 231944930 231944930 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PSMD1 NM_002807 exon12 c.G1315A p.E439K TATCAGGAAGGTG . 86.0 40.0 110.0 0.0 . 77 . . Atlas-SNP DIS3L2 129563 hgsc.bcm.edu hg19 2 232889007 232889007 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DIS3L2 NM_001257282 exon4 c.A231T p.P77P TAATCCAAAGAAG . 389.0 164.0 473.0 0.0 . 77 . . Atlas-SNP DIS3L2 129563 hgsc.bcm.edu hg19 2 233001416 233001416 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DIS3L2 NM_152383 exon8 c.A937G p.N313D GACTGCAATTTTG . 126.0 63.0 113.0 0.0 . 77 . . Atlas-SNP UGT1A10 54575 hgsc.bcm.edu hg19 2 234545950 234545950 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UGT1A10 NM_019075 exon1 c.A782G p.Y261C TGGACTATCCCAA . 82.0 34.0 89.0 0.0 . 71 . . Atlas-SNP SPP2 6694 hgsc.bcm.edu hg19 2 234978570 234978570 + Splice_Site SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPP2 NM_006944 exon7 c.551-2A>G . ATCTTTAGGGATC . 71.0 37.0 72.0 0.0 . 35 . . Atlas-SNP COL6A3 1293 hgsc.bcm.edu hg19 2 238275483 238275483 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL6A3 NM_004369 exon11 c.T5347A p.S1783T CCTCCGAGTCGAT . 129.0 54.0 199.0 0.0 . 608 . . Atlas-SNP CHL1 10752 hgsc.bcm.edu hg19 3 369957 369957 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CHL1 NM_001253388 exon3 c.A305T p.H102L TATCTCACTTTCA . 163.0 85.0 187.0 0.0 . 242 . . Atlas-SNP CNTN6 27255 hgsc.bcm.edu hg19 3 1425084 1425084 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CNTN6 NM_014461 exon19 c.G2509T p.G837C GTGCTGGGCTATG . 42.0 24.0 52.0 0.0 . 245 . . Atlas-SNP ITPR1 3708 hgsc.bcm.edu hg19 3 4699946 4699946 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ITPR1 NM_001099952 exon13 c.G1135T p.D379Y GGAGGTGACAGCC . 80.0 39.0 100.0 0.0 . 659 . . Atlas-SNP SSUH2 51066 hgsc.bcm.edu hg19 3 8661623 8661623 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001256748 exon12 c.T1059A p.Y353X AGTGCCATAGATG . 96.0 38.0 131.0 0.0 . . . . Atlas-SNP SRGAP3 9901 hgsc.bcm.edu hg19 3 9068619 9068619 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SRGAP3 NM_014850 exon13 c.G1600A p.G534R GCTTACCATATAA . 67.0 26.0 87.0 0.0 . 146 . . Atlas-SNP SRGAP3 9901 hgsc.bcm.edu hg19 3 9068641 9068641 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SRGAP3 NM_014850 exon13 c.C1578G p.C526W ACGGATGCAGCTC . 66.0 27.0 92.0 0.0 . 146 . . Atlas-SNP ATP2B2 491 hgsc.bcm.edu hg19 3 10370618 10370618 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATP2B2 NM_001001331 exon23 c.A3612T p.S1204S GAGGGATGACGGC . 98.0 46.0 139.0 0.0 . 304 . . Atlas-SNP C3orf20 84077 hgsc.bcm.edu hg19 3 14813588 14813588 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C3orf20 NM_032137 exon16 c.T2510C p.V837A ACTCTGTCCTGAG . 66.0 27.0 63.0 0.0 . 109 . . Atlas-SNP KCNH8 131096 hgsc.bcm.edu hg19 3 19492664 19492664 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KCNH8 NM_144633 exon10 c.A1593T p.P531P CTTTCCAGATGAA . 52.0 26.0 58.0 0.0 . 189 . . Atlas-SNP EFHB 151651 hgsc.bcm.edu hg19 3 19921298 19921298 + Splice_Site SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EFHB NM_144715 exon14 c.2329-2A>G . GCAATCTAGAAAA . 47.0 25.0 40.0 0.0 . 186 . . Atlas-SNP OXSM 54995 hgsc.bcm.edu hg19 3 25833109 25833109 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OXSM NM_017897 exon2 c.G598T p.G200C CTCAAGGGCCCAA . 114.0 55.0 123.0 0.0 . 54 . . Atlas-SNP GADL1 339896 hgsc.bcm.edu hg19 3 30903131 30903131 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GADL1 NM_207359 exon2 c.T164C p.L55P ATTATTAGCCTAC . 129.0 70.0 117.0 0.0 . 91 . . Atlas-SNP CLASP2 23122 hgsc.bcm.edu hg19 3 33552159 33552159 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CLASP2 NM_015097 exon37 c.A4235G p.D1412G GGGTAGTCTGCAG . 106.0 45.0 126.0 0.0 . 138 . . Atlas-SNP STAC 6769 hgsc.bcm.edu hg19 3 36534678 36534678 + Silent SNP T T C rs199675015 TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . STAC NM_003149 exon6 c.T723C p.N241N AGCCAATGGGCCA . 69.0 36.0 100.0 0.0 . 78 . T|0.999;C|0.001 Atlas-SNP TRANK1 9881 hgsc.bcm.edu hg19 3 36897302 36897302 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRANK1 NM_014831 exon12 c.A3779T p.E1260V TTATCCTCCTCAC . 176.0 84.0 181.0 0.0 . 398 . . Atlas-SNP CCR8 1237 hgsc.bcm.edu hg19 3 39374403 39374403 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCR8 NM_005201 exon2 c.G581T p.W194L TGAAGTGGAAGAT . 61.0 25.0 63.0 0.0 . 34 . . Atlas-SNP CCDC13 152206 hgsc.bcm.edu hg19 3 42775068 42775068 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCDC13 NM_144719 exon11 c.A1405T p.S469C GGCCACTGGACCC . 31.0 15.0 29.0 0.0 . 71 . . Atlas-SNP ZNF662 389114 hgsc.bcm.edu hg19 3 42956611 42956611 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF662 NM_001134656 exon4 c.A1124T p.Q375L TTTCTCAGCACCA . 109.0 47.0 106.0 0.0 . 112 . . Atlas-SNP GTDC2 84892 hgsc.bcm.edu hg19 3 43122344 43122344 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_032806 exon2 c.A580T p.M194L CCTCCATGAAGAA . 70.0 35.0 88.0 0.0 . . . . Atlas-SNP SNRK 54861 hgsc.bcm.edu hg19 3 43389366 43389366 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SNRK NM_017719 exon7 c.A1615G p.S539G AGCTGCAGTAGTT . 158.0 80.0 176.0 0.0 . 118 . . Atlas-SNP EXOSC7 23016 hgsc.bcm.edu hg19 3 45046818 45046818 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EXOSC7 NM_015004 exon6 c.G527C p.G176A AAGAGGGGTCGAA . 114.0 47.0 132.0 0.0 . 19 . . Atlas-SNP FYCO1 79443 hgsc.bcm.edu hg19 3 46011256 46011256 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FYCO1 NM_024513 exon7 c.A541G p.R181G GCGTCCTCCTGTG . 34.0 17.0 57.0 0.0 . 115 . . Atlas-SNP SMARCC1 6599 hgsc.bcm.edu hg19 3 47651729 47651729 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SMARCC1 NM_003074 exon26 c.A2870G p.Q957R TCCATTTGCTGTC . 65.0 31.0 64.0 0.0 . 85 . . Atlas-SNP MST1R 4486 hgsc.bcm.edu hg19 3 49924915 49924915 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MST1R NM_002447 exon20 c.A4028T p.Q1343L ACTATCTGCTCCA . 90.0 38.0 123.0 0.0 . 205 . . Atlas-SNP HEMK1 51409 hgsc.bcm.edu hg19 3 50615001 50615001 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HEMK1 NM_016173 exon6 c.A611T p.Q204L ATGCTCAGAGGTA . 88.0 41.0 120.0 0.0 . 17 . . Atlas-SNP SEMA3G 56920 hgsc.bcm.edu hg19 3 52471561 52471561 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SEMA3G NM_020163 exon15 c.G1860T p.G620G CTCATCCCCTGGC . 131.0 69.0 149.0 0.0 . 58 . . Atlas-SNP SEMA3G 56920 hgsc.bcm.edu hg19 3 52474434 52474434 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SEMA3G NM_020163 exon10 c.G1102T p.G368W AGGGCCCCCACTG . 44.0 17.0 51.0 0.0 . 58 . . Atlas-SNP STAB1 23166 hgsc.bcm.edu hg19 3 52538054 52538054 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . STAB1 NM_015136 exon10 c.A1033T p.R345W GTGTGCAGGGAAA . 52.0 27.0 56.0 0.0 . 178 . . Atlas-SNP ITIH4 3700 hgsc.bcm.edu hg19 3 52860032 52860032 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ITIH4 NM_002218 exon7 c.631-2A>T . TGAGCCTGGAGGA . 51.0 17.0 73.0 0.0 . 74 . . Atlas-SNP CADPS 8618 hgsc.bcm.edu hg19 3 62631427 62631427 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CADPS NM_003716 exon6 c.A1295G p.Q432R TCAGTCTGTAGTT . 86.0 31.0 102.0 0.0 . 387 . . Atlas-SNP PRICKLE2 166336 hgsc.bcm.edu hg19 3 64148718 64148718 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PRICKLE2 NM_198859 exon3 c.C232A p.H78N GCTGGTGTAGTAG . 68.0 25.0 68.0 0.0 . 88 . . Atlas-SNP KBTBD8 84541 hgsc.bcm.edu hg19 3 67054509 67054509 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KBTBD8 NM_032505 exon3 c.A1118T p.K373I TATCCAAACCATC . 90.0 48.0 104.0 0.0 . 101 . . Atlas-SNP ROBO2 6092 hgsc.bcm.edu hg19 3 77595492 77595492 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ROBO2 NM_002942 exon7 c.C938T p.P313L TAGCTCCCCCACA . 58.0 22.0 51.0 0.0 . 527 . . Atlas-SNP CADM2 253559 hgsc.bcm.edu hg19 3 85961527 85961527 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CADM2 NM_001167675 exon6 c.A534T p.V178V AGATGTAAAATAT . 254.0 118.0 224.0 0.0 . 195 . . Atlas-SNP ARL13B 200894 hgsc.bcm.edu hg19 3 93754239 93754239 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ARL13B NM_182896 exon4 c.C445G p.L149V CTATCTCTGGAAA . 156.0 67.0 153.0 0.0 . 52 . . Atlas-SNP IMPG2 50939 hgsc.bcm.edu hg19 3 100964730 100964730 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IMPG2 NM_016247 exon12 c.C1459T p.H487Y CAGAATGAAGAGT . 125.0 59.0 112.0 0.0 . 164 . . Atlas-SNP MYH15 22989 hgsc.bcm.edu hg19 3 108149731 108149731 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYH15 NM_014981 exon27 c.A3320G p.E1107G TCATTCTCCACTT . 44.0 14.0 52.0 0.0 . 223 . . Atlas-SNP DZIP3 9666 hgsc.bcm.edu hg19 3 108396342 108396342 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DZIP3 NM_014648 exon26 c.2782-2A>T . TCTACCAGACACA . 207.0 95.0 248.0 1.0 . 111 . . Atlas-SNP DZIP3 9666 hgsc.bcm.edu hg19 3 108396438 108396438 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DZIP3 NM_014648 exon26 c.A2876T p.E959V GTCCTGAGATACT . 194.0 88.0 291.0 0.0 . 111 . . Atlas-SNP TRAT1 50852 hgsc.bcm.edu hg19 3 108572586 108572586 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRAT1 NM_016388 exon6 c.T423G p.H141Q ACTACATGCAATA . 328.0 165.0 384.0 0.0 . 48 . . Atlas-SNP SLC9C1 285335 hgsc.bcm.edu hg19 3 111888053 111888053 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_183061 exon24 c.A3042G p.L1014L ATAAGATAAGTGT . 75.0 28.0 68.0 0.0 . . . . Atlas-SNP CCDC80 151887 hgsc.bcm.edu hg19 3 112357721 112357721 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCDC80 NM_199511 exon2 c.T1032A p.P344P TGAGGGAGGTTGG . 29.0 9.0 45.0 0.0 . 100 . . Atlas-SNP WDR52 55779 hgsc.bcm.edu hg19 3 113092276 113092276 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . WDR52 NM_001164496 exon18 c.T2426C p.I809T GTTTGGATGGGAT . 90.0 37.0 79.0 0.0 . 151 . . Atlas-SNP ATP6V1A 523 hgsc.bcm.edu hg19 3 113524316 113524316 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATP6V1A NM_001690 exon14 c.A1705G p.I569V TGGTCCATTATTC . 176.0 74.0 182.0 0.0 . 71 . . Atlas-SNP ARHGAP31 57514 hgsc.bcm.edu hg19 3 119133814 119133814 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ARHGAP31 NM_020754 exon12 c.T3038A p.L1013Q CTGGCCTGAAAGG . 65.0 23.0 65.0 0.0 . 175 . . Atlas-SNP GPR156 165829 hgsc.bcm.edu hg19 3 119886437 119886437 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPR156 NM_153002 exon9 c.T1887A p.P629P TGCCCCAGGAACA . 43.0 24.0 53.0 0.0 . 85 . . Atlas-SNP STXBP5L 9515 hgsc.bcm.edu hg19 3 120871322 120871322 + Splice_Site SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . STXBP5L NM_014980 exon8 c.670-2A>G . TTTTCCAGCTGCT . 47.0 20.0 72.0 0.0 . 159 . . Atlas-SNP POLQ 10721 hgsc.bcm.edu hg19 3 121263593 121263593 + Silent SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . POLQ NM_199420 exon2 c.A324C p.G108G ATTCTTTCCTTCC . 159.0 67.0 166.0 0.0 . 273 . . Atlas-SNP CD86 942 hgsc.bcm.edu hg19 3 121828150 121828150 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CD86 NM_175862 exon5 c.T742C p.W248R ATTCCTTGGATTA . 93.0 38.0 106.0 0.0 . 43 . . Atlas-SNP UROC1 131669 hgsc.bcm.edu hg19 3 126219694 126219694 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UROC1 NM_001165974 exon12 c.A1169G p.D390G GTCGTGTCCAATT . 57.0 22.0 72.0 0.0 . 150 . . Atlas-SNP PODXL2 50512 hgsc.bcm.edu hg19 3 127379659 127379659 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PODXL2 NM_015720 exon3 c.A788C p.Q263P CCAGCCAAGAGGC . 138.0 60.0 121.0 0.0 . 53 . . Atlas-SNP CNBP 7555 hgsc.bcm.edu hg19 3 128890513 128890513 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CNBP NM_003418 exon2 c.A88T p.R30X GGCTTCTCATTCC . 293.0 141.0 367.0 1.0 . 12 . . Atlas-SNP COL6A5 256076 hgsc.bcm.edu hg19 3 130092493 130092493 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL6A5 NM_153264 exon2 c.G12A p.L4L GATCTTGCTAATT . 388.0 150.0 457.0 0.0 . 205 . . Atlas-SNP COL6A6 131873 hgsc.bcm.edu hg19 3 130281939 130281939 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL6A6 NM_001102608 exon2 c.T92C p.L31S TGTTTTTGGTGGA . 87.0 46.0 104.0 0.0 . 497 . . Atlas-SNP COL6A6 131873 hgsc.bcm.edu hg19 3 130284329 130284329 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL6A6 NM_001102608 exon3 c.C1153A p.Q385K GCTGAGCAGTATG . 101.0 46.0 117.0 0.0 . 497 . . Atlas-SNP ATP2C1 27032 hgsc.bcm.edu hg19 3 130714897 130714897 + Nonsense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd ATP2C1,NS,carcinoma,0,5 ATP2C1 NM_001199181 exon22 c.G2170T p.E724X GCAATCGAAGAGG . 23.0 10.0 30.0 0.0 . 94 . . Atlas-SNP DNAJC13 23317 hgsc.bcm.edu hg19 3 132153447 132153447 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DNAJC13 NM_015268 exon2 c.A53G p.H18R CAAAACATTCATG . 26.0 15.0 43.0 0.0 . 253 . . Atlas-SNP TMEM108 66000 hgsc.bcm.edu hg19 3 132948183 132948183 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMEM108 NM_023943 exon3 c.T28C p.C10R CTCTATTGCCAAC . 44.0 14.0 60.0 0.0 . 67 . . Atlas-SNP TMEM108 66000 hgsc.bcm.edu hg19 3 133099726 133099726 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMEM108 NM_023943 exon4 c.A1171T p.R391W CCCTCCAGGGTCT . 66.0 29.0 69.0 0.0 . 67 . . Atlas-SNP BFSP2 8419 hgsc.bcm.edu hg19 3 133169265 133169265 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd BFSP2,NS,lymphoid_neoplasm,0,1 BFSP2 NM_003571 exon4 c.T848C p.V283A GAGATGTTGAAAA . 48.0 19.0 56.0 0.0 . 48 . . Atlas-SNP TOPBP1 11073 hgsc.bcm.edu hg19 3 133372268 133372268 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TOPBP1 NM_007027 exon7 c.A843G p.I281M CTTGTATATGGAT . 68.0 26.0 78.0 0.0 . 218 . . Atlas-SNP CEP63 80254 hgsc.bcm.edu hg19 3 134265095 134265095 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CEP63 NM_001042383 exon8 c.G894T p.K298N AGTAAAGGCAACT . 424.0 210.0 403.0 0.0 . 56 . . Atlas-SNP SPSB4 92369 hgsc.bcm.edu hg19 3 140785585 140785585 + Silent SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPSB4 NM_080862 exon2 c.G639T p.V213V GGTGGTGAGTGCC . 77.0 43.0 81.0 0.0 . 19 . . Atlas-SNP XRN1 54464 hgsc.bcm.edu hg19 3 142122605 142122605 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . XRN1 NM_001042604 exon18 c.A2014G p.K672E TTTTCTTCAAAAA . 309.0 120.0 309.0 0.0 . 138 . . Atlas-SNP ATR 545 hgsc.bcm.edu hg19 3 142253962 142253962 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATR NM_001184 exon21 c.A3905T p.H1302L AGAGCATGAATAC . 106.0 55.0 99.0 0.0 . 285 . . Atlas-SNP ATR 545 hgsc.bcm.edu hg19 3 142281191 142281191 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATR NM_001184 exon4 c.G1053T p.Q351H GAAATACTGCAGT . 190.0 97.0 224.0 0.0 . 285 . . Atlas-SNP CPB1 1360 hgsc.bcm.edu hg19 3 148558665 148558665 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CPB1 NM_001871 exon5 c.A377T p.E126V AGATAGAGGCTTG . 83.0 40.0 78.0 0.0 . 74 . . Atlas-SNP ANKUB1 389161 hgsc.bcm.edu hg19 3 149485426 149485426 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ANKUB1 NM_001144960 exon5 c.A1023G p.A341A AACTTTTGCCCCA . 44.0 21.0 44.0 0.0 . 27 . . Atlas-SNP FAM194A 131831 hgsc.bcm.edu hg19 3 150396254 150396254 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAM194A NM_152394 exon10 c.A1199C p.Q400P CTTAGTTGAAAAT . 230.0 87.0 222.0 0.0 . 91 . . Atlas-SNP P2RY1 5028 hgsc.bcm.edu hg19 3 152554322 152554322 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . P2RY1 NM_002563 exon1 c.A751T p.N251Y CTGGACAACTCTC . 77.0 41.0 88.0 0.0 . 49 . . Atlas-SNP GPR149 344758 hgsc.bcm.edu hg19 3 154145340 154145340 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPR149 NM_001038705 exon2 c.A1139G p.Q380R GCGTTCTGCCTGC . 49.0 21.0 52.0 0.0 . 134 . . Atlas-SNP GPR149 344758 hgsc.bcm.edu hg19 3 154145356 154145356 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPR149 NM_001038705 exon2 c.A1123G p.I375V TGATGATGCAGCC . 56.0 23.0 58.0 0.0 . 134 . . Atlas-SNP MME 4311 hgsc.bcm.edu hg19 3 154889935 154889935 + Silent SNP C C A rs201494121 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd MME,NS,carcinoma,0,1 MME NM_007287 exon21 c.C2010A p.G670G GAATGGCGAAGAA . 358.0 167.0 370.0 1.0 . 133 . . Atlas-SNP TRIM59 286827 hgsc.bcm.edu hg19 3 160156798 160156798 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRIM59 NM_173084 exon3 c.T174C p.N58N TCTGCAATTAGGG . 120.0 46.0 132.0 0.0 . 42 . . Atlas-SNP SI 6476 hgsc.bcm.edu hg19 3 164739156 164739156 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SI NM_001041 exon27 c.A3115G p.K1039E TCTTCTTTTGGGG . 91.0 41.0 106.0 0.0 . 500 . . Atlas-SNP LRRIQ4 344657 hgsc.bcm.edu hg19 3 169539921 169539921 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRRIQ4 NM_001080460 exon1 c.A212G p.K71R GTTTAAAGAACAT . 112.0 45.0 107.0 0.0 . 68 . . Atlas-SNP SPATA16 83893 hgsc.bcm.edu hg19 3 172643281 172643281 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPATA16 NM_031955 exon7 c.T1083A p.D361E TTGAAGATCTGAA . 163.0 75.0 201.0 0.0 . 111 . . Atlas-SNP ECE2 9718 hgsc.bcm.edu hg19 3 184009911 184009911 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ECE2 NM_014693 exon19 c.G2537T p.S846I CCCACAGCCCTGC . 106.0 26.0 119.0 0.0 . 303 . . Atlas-SNP EPHB3 2049 hgsc.bcm.edu hg19 3 184298263 184298263 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EPHB3 NM_004443 exon12 c.T2246A p.L749Q AGTACCTGTCCGA . 80.0 35.0 105.0 0.0 . 114 . . Atlas-SNP RTP4 64108 hgsc.bcm.edu hg19 3 187088757 187088757 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RTP4 NM_022147 exon2 c.A337T p.R113W ACCATGAGGATTC . 103.0 48.0 109.0 0.0 . 20 . . Atlas-SNP LEPREL1 55214 hgsc.bcm.edu hg19 3 189691795 189691795 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LEPREL1 NM_001134418 exon11 c.910-2A>T . ATTCCCTGGAAGC . 91.0 42.0 120.0 0.0 . 95 . . Atlas-SNP CLDN16 10686 hgsc.bcm.edu hg19 3 190120151 190120151 + Missense_Mutation SNP G G T rs104893732 bycluster;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CLDN16 NM_006580 exon2 c.G350T p.W117L GCCTCTGGTGGGA . 65.0 20.0 83.0 0.0 . 59 . . Atlas-SNP CCDC50 152137 hgsc.bcm.edu hg19 3 191078935 191078935 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCDC50 NM_174908 exon4 c.A317G p.E106G TTCAGGAGAAGAA . 384.0 157.0 442.0 0.0 . 39 . . Atlas-SNP ATP13A4 84239 hgsc.bcm.edu hg19 3 193128796 193128796 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATP13A4 NM_032279 exon28 c.T3272C p.I1091T TCTGGTATATCAG . 342.0 148.0 382.0 1.0 . 154 . . Atlas-SNP ATP13A4 84239 hgsc.bcm.edu hg19 3 193232491 193232491 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATP13A4 NM_032279 exon2 c.C230A p.T77K ACCGTTGTCCTCA . 72.0 31.0 77.0 0.0 . 154 . . Atlas-SNP OPA1 4976 hgsc.bcm.edu hg19 3 193336697 193336697 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OPA1 NM_130837 exon6 c.G650C p.G217A ATCGTGGATCTGA . 59.0 20.0 72.0 0.0 . 79 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195511219 195511219 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MUC4 NM_018406 exon2 c.C7232T p.T2411I TGACCTGTGGATG . 319.0 40.0 339.0 0.0 . 1505 . . Atlas-SNP TNK2 10188 hgsc.bcm.edu hg19 3 195594061 195594061 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TNK2 NM_005781 exon13 c.G2961T p.Q987H AGCCCTCTGCACG . 187.0 84.0 209.0 0.0 . 246 . . Atlas-SNP RNF168 165918 hgsc.bcm.edu hg19 3 196199329 196199329 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RNF168 NM_152617 exon6 c.A1077G p.S359S CACCCCTGATGTG . 98.0 45.0 93.0 0.0 . 49 . . Atlas-SNP ZNF721 170960 hgsc.bcm.edu hg19 4 436177 436177 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF721 NM_133474 exon3 c.G2079G p.K693K TTTTTCTCCAGTA . 93.0 31.0 119.0 0.0 . 205 . . Atlas-SNP PDE6B 5158 hgsc.bcm.edu hg19 4 656968 656968 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PDE6B NM_001145291 exon15 c.T1912A p.S638T CTGCTCTCGGAGG . 87.0 27.0 129.0 0.0 . 80 . . Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3189596 3189596 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HTT NM_002111 exon39 c.A5208T p.P1736P TTTGCCAGAAGAA . 18.0 13.0 50.0 0.0 . 221 . . Atlas-SNP HGFAC 3083 hgsc.bcm.edu hg19 4 3447852 3447852 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HGFAC NM_001528 exon10 c.A1186T p.R396W TGCGGCAGGAGGC . 83.0 41.0 127.0 0.0 . 69 . . Atlas-SNP OTOP1 133060 hgsc.bcm.edu hg19 4 4199319 4199319 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OTOP1 NM_177998 exon5 c.T1242A p.C414X CTCAGCACAGAGG . 57.0 32.0 68.0 0.0 . 118 . . Atlas-SNP ZBTB49 166793 hgsc.bcm.edu hg19 4 4304686 4304686 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZBTB49 NM_145291 exon3 c.A1123G p.R375G ACGGAGAGGCCTG . 138.0 45.0 186.0 0.0 . 63 . . Atlas-SNP SORCS2 57537 hgsc.bcm.edu hg19 4 7730109 7730109 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SORCS2 NM_020777 exon22 c.A2902G p.K968E TTTTCCAAGGAGC . 47.0 18.0 72.0 0.0 . 98 . . Atlas-SNP CD38 952 hgsc.bcm.edu hg19 4 15850179 15850179 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CD38 NM_001775 exon8 c.A857T p.Q286L TTCTTCAGTGTGT . 49.0 15.0 63.0 0.0 . 36 . . Atlas-SNP PROM1 8842 hgsc.bcm.edu hg19 4 16025970 16025970 + Nonsense_Mutation SNP A A T rs368213921 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PROM1 NM_006017 exon6 c.T642A p.Y214X CAATATATATTTG . 55.0 33.0 73.0 0.0 . 91 . . Atlas-SNP NCAPG 64151 hgsc.bcm.edu hg19 4 17814020 17814020 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NCAPG NM_022346 exon2 c.A288C p.L96F CCTTTTAAATTAT . 47.0 20.0 70.0 0.0 . 76 . . Atlas-SNP SLIT2 9353 hgsc.bcm.edu hg19 4 20591288 20591288 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLIT2 NM_004787 exon30 c.T3110A p.L1037Q AGAAGCTGGACTT . 86.0 34.0 96.0 0.0 . 290 . . Atlas-SNP PCDH7 5099 hgsc.bcm.edu hg19 4 30724512 30724512 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDH7 NM_032457 exon1 c.T1468C p.S490P CACACCTCGACCC . 45.0 22.0 57.0 0.0 . 215 . . Atlas-SNP PGM2 55276 hgsc.bcm.edu hg19 4 37836307 37836307 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PGM2 NM_018290 exon3 c.A317G p.D106G GTTTTGACGCCCG . 377.0 182.0 426.0 0.0 . 45 . . Atlas-SNP TLR10 81793 hgsc.bcm.edu hg19 4 38774823 38774823 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TLR10 NM_001017388 exon2 c.G2389C p.E797Q GAGACTCTTCATT . 74.0 20.0 76.0 0.0 . 87 . . Atlas-SNP SHISA3 152573 hgsc.bcm.edu hg19 4 42403330 42403330 + Silent SNP C C A rs377514630 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SHISA3 NM_001080505 exon2 c.C579A p.P193P ACCGCCCCCGCCA . 63.0 32.0 57.0 0.0 . 27 . . Atlas-SNP ATP8A1 10396 hgsc.bcm.edu hg19 4 42446619 42446619 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATP8A1 NM_006095 exon32 c.A2991G p.G997G CTCCAATCCAGCT . 58.0 26.0 95.0 0.0 . 206 . . Atlas-SNP GRXCR1 389207 hgsc.bcm.edu hg19 4 43022411 43022411 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GRXCR1 NM_001080476 exon3 c.T668A p.L223Q GAGAACTGCAAGA . 212.0 87.0 277.0 0.0 . 78 . . Atlas-SNP GABRG1 2565 hgsc.bcm.edu hg19 4 46066495 46066495 + Silent SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GABRG1 NM_173536 exon5 c.C588A p.P196P ATCCATGGGAAAG . 328.0 137.0 403.0 0.0 . 172 . . Atlas-SNP GABRG1 2565 hgsc.bcm.edu hg19 4 46099287 46099287 + Nonsense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GABRG1 NM_173536 exon2 c.G184T p.G62X TATCTCCTTCATG . 126.0 66.0 204.0 1.0 . 172 . . Atlas-SNP SGCB 6443 hgsc.bcm.edu hg19 4 52890300 52890300 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SGCB NM_000232 exon6 c.T780G p.S260S CATCACAGATCCA . 84.0 34.0 80.0 0.0 . 35 . . Atlas-SNP SCFD2 152579 hgsc.bcm.edu hg19 4 53786893 53786893 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SCFD2 NM_152540 exon6 c.A1706T p.Q569L CTTGCCTGGTGGG . 41.0 12.0 58.0 0.0 . 78 . . Atlas-SNP PDGFRA 5156 hgsc.bcm.edu hg19 4 55138653 55138653 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PDGFRA NM_006206 exon9 c.G1330C p.D444H CTTCCTGATATTG . 53.0 26.0 79.0 0.0 . 1583 . . Atlas-SNP KDR 3791 hgsc.bcm.edu hg19 4 55984967 55984967 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KDR NM_002253 exon3 c.G162A p.R54R CTGTCCCCTGAAA . 115.0 60.0 121.0 0.0 . 307 . . Atlas-SNP LPHN3 23284 hgsc.bcm.edu hg19 4 62758609 62758609 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LPHN3 NM_015236 exon7 c.A1512T p.R504R AGCCCGAGAAATC . 59.0 26.0 99.0 0.0 . 800 . . Atlas-SNP UBA6 55236 hgsc.bcm.edu hg19 4 68506897 68506897 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UBA6 NM_018227 exon18 c.A1526G p.Q509R AGGAACTGTCTAT . 85.0 46.0 96.0 0.0 . 98 . . Atlas-SNP TMPRSS11A 339967 hgsc.bcm.edu hg19 4 68789885 68789885 + Splice_Site SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMPRSS11A NM_001114387 exon7 c.482-1G>T . TCATTGCTGAAAA . 52.0 16.0 93.0 0.0 . 74 . . Atlas-SNP CSN3 1448 hgsc.bcm.edu hg19 4 71113535 71113535 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CSN3 NM_005212 exon3 c.G55T p.A19S CCCCAGGCTGTGG . 278.0 85.0 318.0 0.0 . 43 . . Atlas-SNP RUFY3 22902 hgsc.bcm.edu hg19 4 71629350 71629350 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RUFY3 NM_001130709 exon3 c.A614T p.E205V CCGCAGAGATAAC . 314.0 160.0 400.0 0.0 . 61 . . Atlas-SNP NPFFR2 10886 hgsc.bcm.edu hg19 4 72994372 72994372 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NPFFR2 NM_004885 exon2 c.A370T p.T124S AATGACACAAAGC . 79.0 36.0 83.0 0.0 . 98 . . Atlas-SNP ADAMTS3 9508 hgsc.bcm.edu hg19 4 73414452 73414452 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAMTS3 NM_014243 exon3 c.A247G p.N83D TGATGTTAAAGAA . 92.0 42.0 131.0 0.0 . 164 . . Atlas-SNP CXCL1 2919 hgsc.bcm.edu hg19 4 74735406 74735406 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CXCL1 NM_001511 exon2 c.C121A p.L41M ACTGAACTGCGCT . 134.0 54.0 153.0 0.0 . 6 . . Atlas-SNP C4orf26 152816 hgsc.bcm.edu hg19 4 76489571 76489571 + Nonsense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C4orf26 NM_178497 exon2 c.T315G p.Y105X ATTTTATTGGCCA . 206.0 77.0 280.0 0.0 . 24 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79229364 79229364 + Splice_Site SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FRAS1 NM_001166133 exon15 c.1678+1G>T . GTAGCGGTGAGTG . 75.0 27.0 115.0 0.0 . 779 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79285157 79285157 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FRAS1 NM_001166133 exon22 c.A2671T p.S891C ACCTGCAGCACCA . 80.0 33.0 100.0 0.0 . 779 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79458286 79458286 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FRAS1 NM_025074 exon72 c.T11230A p.Y3744N ACAATCTACAATG . 87.0 31.0 119.0 0.0 . 779 . . Atlas-SNP CCSER1 401145 hgsc.bcm.edu hg19 4 91549369 91549369 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001145065 exon6 c.A1918G p.R640G ATGAAGAGAGTTC . 117.0 64.0 146.0 0.0 . . . . Atlas-SNP GRID2 2895 hgsc.bcm.edu hg19 4 94436432 94436432 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GRID2 NM_001510 exon13 c.A2063G p.Y688C CGGTATATGAGCA . 80.0 40.0 88.0 0.0 . 233 . . Atlas-SNP ATOH1 474 hgsc.bcm.edu hg19 4 94750985 94750985 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATOH1 NM_005172 exon1 c.C908A p.T303K CCCTGACAGCGAT . 57.0 28.0 38.0 0.0 . 40 . . Atlas-SNP SLC9B1 150159 hgsc.bcm.edu hg19 4 103822469 103822469 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_139173 exon12 c.T1353A p.A451A TTCTAGAGCCAGA . 202.0 49.0 213.0 0.0 . . . . Atlas-SNP TBCK 93627 hgsc.bcm.edu hg19 4 107154797 107154797 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TBCK NM_001163436 exon16 c.A1460T p.H487L TTGGCATGAATAG . 244.0 117.0 281.0 0.0 . 89 . . Atlas-SNP ALPK1 80216 hgsc.bcm.edu hg19 4 113303587 113303587 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ALPK1 NM_001102406 exon4 c.A155T p.Q52L TGATCCAGGAGGC . 215.0 105.0 243.0 1.0 . 125 . . Atlas-SNP ANK2 287 hgsc.bcm.edu hg19 4 114278661 114278661 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ANK2 NM_001148 exon38 c.A8887G p.T2963A TCTGTTACCATCA . 87.0 39.0 114.0 0.0 . 576 . . Atlas-SNP NDST4 64579 hgsc.bcm.edu hg19 4 115858495 115858495 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NDST4 NM_022569 exon5 c.C1386T p.G462G AATGAAGCCCTTT . 90.0 37.0 93.0 0.0 . 193 . . Atlas-SNP NDST4 64579 hgsc.bcm.edu hg19 4 115997739 115997739 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NDST4 NM_022569 exon2 c.A454G p.K152E AGTATTTTTCTAA . 104.0 37.0 113.0 0.0 . 193 . . Atlas-SNP NDST3 9348 hgsc.bcm.edu hg19 4 119174753 119174753 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NDST3 NM_004784 exon13 c.T2499A p.S833S GGATTCTGATGTA . 271.0 103.0 318.0 0.0 . 107 . . Atlas-SNP SEC24D 9871 hgsc.bcm.edu hg19 4 119727008 119727008 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SEC24D NM_014822 exon7 c.A903G p.I301M GTCTTGTATCATG . 44.0 20.0 28.0 0.0 . 96 . . Atlas-SNP BBS7 55212 hgsc.bcm.edu hg19 4 122756329 122756329 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BBS7 NM_018190 exon14 c.A1481G p.H494R CTTTGATGGAGTG . 95.0 29.0 140.0 0.0 . 61 . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123113385 123113385 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIAA1109 NM_015312 exon9 c.A903T p.G301G TATAGGACTTGTT . 110.0 54.0 95.0 0.0 . 424 . . Atlas-SNP ADAD1 132612 hgsc.bcm.edu hg19 4 123336766 123336766 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAD1 NM_139243 exon11 c.T1482A p.T494T GATCACTGAAAGG . 82.0 36.0 98.0 0.0 . 94 . . Atlas-SNP SPATA5 166378 hgsc.bcm.edu hg19 4 123859404 123859404 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPATA5 NM_145207 exon8 c.A1458T p.S486S TGGTTCAGTAAGT . 52.0 17.0 80.0 0.0 . 62 . . Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126328165 126328165 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAT4 NM_024582 exon3 c.T5438C p.L1813P CACTGCTAGTTCG . 80.0 12.0 117.0 0.0 . 1752 . . Atlas-SNP PCDH10 57575 hgsc.bcm.edu hg19 4 134084265 134084265 + Silent SNP C C A rs151224823 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDH10 NM_032961 exon4 c.C2931A p.G977G TCCTGGCATGGAC . 89.0 37.0 92.0 0.0 . 290 . C|0.998;G|0.002 Atlas-SNP ELMOD2 255520 hgsc.bcm.edu hg19 4 141448650 141448650 + Splice_Site SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ELMOD2 NM_153702 exon3 c.171+2T>C . ATAAGGTAGGATA . 272.0 115.0 375.0 0.0 . 16 . . Atlas-SNP INPP4B 8821 hgsc.bcm.edu hg19 4 143007366 143007366 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . INPP4B NM_003866 exon25 c.A2418G p.L806L ATTTTCTAGCAAT . 28.0 15.0 26.0 0.0 . 132 . . Atlas-SNP USP38 84640 hgsc.bcm.edu hg19 4 144133531 144133531 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . USP38 NM_032557 exon8 c.A1558T p.R520X ACTCCCAGATCAC . 73.0 34.0 65.0 0.0 . 92 . . Atlas-SNP TTC29 83894 hgsc.bcm.edu hg19 4 147860987 147860987 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTC29 NM_031956 exon3 c.A61T p.K21X GCAGCTTCTGTCT . 84.0 44.0 105.0 0.0 . 63 . . Atlas-SNP TIGD4 201798 hgsc.bcm.edu hg19 4 153691590 153691590 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TIGD4 NM_145720 exon2 c.T567C p.Y189Y CATTCGATAAAGC . 108.0 48.0 160.0 0.0 . 53 . . Atlas-SNP FHDC1 85462 hgsc.bcm.edu hg19 4 153897040 153897040 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FHDC1 NM_033393 exon11 c.C2597A p.S866Y GAGGCTCCCTGAA . 177.0 83.0 243.0 0.0 . 102 . . Atlas-SNP GRIA2 2891 hgsc.bcm.edu hg19 4 158262575 158262575 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GRIA2 NM_000826 exon12 c.T2004C p.Y668Y TGCTTATGGAACA . 86.0 43.0 82.0 0.0 . 358 . . Atlas-SNP TMEM144 55314 hgsc.bcm.edu hg19 4 159174638 159174638 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMEM144 NM_018342 exon13 c.A997G p.I333V TGCATCATCTTGA . 43.0 15.0 55.0 0.0 . 34 . . Atlas-SNP FSTL5 56884 hgsc.bcm.edu hg19 4 162954782 162954782 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FSTL5 NM_020116 exon3 c.T155A p.V52D CCTTTGACTCTTG . 107.0 50.0 147.0 0.0 . 207 . . Atlas-SNP DDX60L 91351 hgsc.bcm.edu hg19 4 169299546 169299546 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DDX60L NM_001012967 exon33 c.G4444T p.A1482S ATTTTGCTGGAAT . 253.0 87.0 331.0 1.0 . 116 . . Atlas-SNP GALNTL6 442117 hgsc.bcm.edu hg19 4 173730577 173730577 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GALNTL6 NM_001034845 exon6 c.A619G p.K207E CGCACCAAGAAAA . 85.0 27.0 104.0 0.0 . 102 . . Atlas-SNP ADAM29 11086 hgsc.bcm.edu hg19 4 175897487 175897487 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAM29 NM_001130703 exon4 c.A811C p.K271Q TATTGCAAGTGGA . 117.0 50.0 152.0 0.0 . 262 . . Atlas-SNP ADAM29 11086 hgsc.bcm.edu hg19 4 175897603 175897603 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAM29 NM_001130703 exon4 c.A927T p.P309P TACACCACACCGT . 155.0 56.0 243.0 0.0 . 262 . . Atlas-SNP ADAM29 11086 hgsc.bcm.edu hg19 4 175899050 175899050 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAM29 NM_001130703 exon4 c.C2374A p.P792T TTGACGCCTTCCC . 108.0 28.0 174.0 0.0 . 262 . . Atlas-SNP WDR17 116966 hgsc.bcm.edu hg19 4 177098697 177098697 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . WDR17 NM_170710 exon30 c.A3741G p.L1247L GAGACTAAAAGAA . 96.0 50.0 120.0 0.0 . 198 . . Atlas-SNP VEGFC 7424 hgsc.bcm.edu hg19 4 177608644 177608644 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd VEGFC,NS,carcinoma,0,1 VEGFC NM_005429 exon6 c.G842A p.G281E TTTGGTCCACAGA . 45.0 17.0 39.0 0.0 . 94 . . Atlas-SNP TENM3 55714 hgsc.bcm.edu hg19 4 183549876 183549876 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001080477 exon4 c.A822T p.A274A AATGGCATCTGGC . 102.0 73.0 268.0 0.0 . . . . Atlas-SNP FAT1 2195 hgsc.bcm.edu hg19 4 187538294 187538294 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAT1 NM_005245 exon11 c.G8940A p.V2980V TTTCTTCACATAT . 47.0 36.0 126.0 0.0 . 500 . . Atlas-SNP FAT1 2195 hgsc.bcm.edu hg19 4 187539226 187539226 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAT1 NM_005245 exon10 c.A8514T p.S2838S GGTTCCTGAGTCA . 48.0 29.0 83.0 0.0 . 500 . . Atlas-SNP PLEKHG4B 153478 hgsc.bcm.edu hg19 5 163383 163383 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PLEKHG4B NM_052909 exon11 c.A2128T p.T710S ACCCAGACCCTGG . 41.0 32.0 99.0 0.0 . 167 . . Atlas-SNP BRD9 65980 hgsc.bcm.edu hg19 5 878542 878542 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BRD9 NM_023924 exon11 c.A1199T p.D400V TTCAAGTCGCCAA . 59.0 13.0 72.0 0.0 . 113 . . Atlas-SNP TRIP13 9319 hgsc.bcm.edu hg19 5 901481 901481 + Nonsense_Mutation SNP T T G rs375761713 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRIP13 NM_004237 exon5 c.T470G p.L157X CAACTTTACTGTT . 77.0 33.0 129.0 0.0 . 41 . . Atlas-SNP SLC12A7 10723 hgsc.bcm.edu hg19 5 1053467 1053467 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC12A7 NM_006598 exon23 c.A3157T p.N1053Y TACAGTTCTCGTC . 58.0 25.0 78.0 0.0 . 97 . . Atlas-SNP TERT 7015 hgsc.bcm.edu hg19 5 1254534 1254534 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TERT NM_198253 exon15 c.C3244T p.L1082L GAGTCAGCTTGAG . 56.0 25.0 78.0 0.0 . 2594 . . Atlas-SNP SLC6A3 6531 hgsc.bcm.edu hg19 5 1414820 1414820 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC6A3 NM_001044 exon8 c.A1142G p.D381G GCCACGTCCCCGA . 40.0 18.0 56.0 0.0 . 102 . . Atlas-SNP ADCY2 108 hgsc.bcm.edu hg19 5 7817092 7817092 + Silent SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADCY2 NM_020546 exon23 c.G2997C p.V999V GCGAGTGGGTACG . 104.0 42.0 169.0 0.0 . 337 . . Atlas-SNP MTRR 4552 hgsc.bcm.edu hg19 5 7878172 7878172 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MTRR NM_024010 exon5 c.G598T p.A200S TCACCTGCATCCT . 38.0 20.0 71.0 0.0 . 74 . . Atlas-SNP CTNND2 1501 hgsc.bcm.edu hg19 5 11098804 11098804 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd CTNND2,colon,carcinoma,0,1 CTNND2 NM_001332 exon15 c.G2520T p.M840I CCACAGCATCTGG . 63.0 28.0 71.0 0.0 . 289 . . Atlas-SNP CTNND2 1501 hgsc.bcm.edu hg19 5 11117662 11117662 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd CTNND2,NS,carcinoma,0,1 CTNND2 NM_001332 exon13 c.G2177T p.G726V TCCTCTCCGGCCG . 78.0 29.0 122.0 0.0 . 289 . . Atlas-SNP MYO10 4651 hgsc.bcm.edu hg19 5 16711259 16711259 + Silent SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYO10 NM_012334 exon20 c.C2025A p.V675V TCTTCGGACCGCA . 104.0 60.0 180.0 0.0 . 198 . . Atlas-SNP TTC23L 153657 hgsc.bcm.edu hg19 5 34880306 34880306 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTC23L NM_144725 exon9 c.A970G p.I324V TATTTCATAAGAA . 198.0 94.0 186.0 0.0 . 47 . . Atlas-SNP SPEF2 79925 hgsc.bcm.edu hg19 5 35709050 35709050 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPEF2 NM_024867 exon19 c.T2666A p.V889D TTGAAGTTGAGAA . 218.0 81.0 243.0 0.0 . 324 . . Atlas-SNP C6 729 hgsc.bcm.edu hg19 5 41143008 41143008 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C6 NM_001115131 exon18 c.A2724T p.T908T GTTCAATGTTTTC . 82.0 34.0 89.0 0.0 . 197 . . Atlas-SNP ITGA2 3673 hgsc.bcm.edu hg19 5 52369005 52369005 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd ITGA2_ENST00000296585,NS,carcinoma,0,2 ITGA2 NM_002203 exon20 c.G2487A p.L829L AACGCTGAAAAAT . 79.0 31.0 80.0 2.0 . 211 . . Atlas-SNP PPAP2A 8611 hgsc.bcm.edu hg19 5 54763943 54763943 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PPAP2A NM_176895 exon3 c.A248T p.N83I AAAAGGTTACAGT . 57.0 22.0 74.0 0.0 . 42 . . Atlas-SNP PLK2 10769 hgsc.bcm.edu hg19 5 57750786 57750786 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PLK2 NM_006622 exon13 c.A1818T p.L606L AGATTTTAGCCAC . 123.0 54.0 157.0 0.0 . 71 . . Atlas-SNP SLC30A5 64924 hgsc.bcm.edu hg19 5 68423913 68423913 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC30A5 NM_022902 exon15 c.A2081G p.H694R CAATTCATATACA . 66.0 27.0 73.0 0.0 . 54 . . Atlas-SNP MAP1B 4131 hgsc.bcm.edu hg19 5 71494454 71494454 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MAP1B NM_005909 exon5 c.G5272C p.D1758H CCCAGAGATATGT . 49.0 18.0 63.0 0.0 . 243 . . Atlas-SNP RASGRF2 5924 hgsc.bcm.edu hg19 5 80363997 80363997 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RASGRF2 NM_006909 exon3 c.A542T p.E181V AATCAGAGGTATT . 61.0 42.0 79.0 0.0 . 165 . . Atlas-SNP XRCC4 7518 hgsc.bcm.edu hg19 5 82491711 82491711 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . XRCC4 NM_003401 exon4 c.A438T p.K146N GCAGAAAGAAAAT . 45.0 29.0 50.0 0.0 . 37 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 90055290 90055290 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPR98 NM_032119 exon58 c.A12005G p.N4002S CGTTCAATATTTC . 72.0 24.0 107.0 0.0 . 605 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 90077396 90077396 + Splice_Site SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPR98 NM_032119 exon65 c.13231+1G>T . TCGAAGGTAGGTT . 182.0 60.0 262.0 0.0 . 605 . . Atlas-SNP TMEM232 642987 hgsc.bcm.edu hg19 5 109904164 109904164 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMEM232 NM_001039763 exon11 c.C1439T p.A480V TTGATTGCATTTT . 82.0 15.0 113.0 0.0 . 57 . . Atlas-SNP WDR36 134430 hgsc.bcm.edu hg19 5 110430616 110430616 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . WDR36 NM_139281 exon2 c.331-2A>T . TTAAACAGGTTCA . 50.0 28.0 77.0 0.0 . 111 . . Atlas-SNP SNCAIP 9627 hgsc.bcm.edu hg19 5 121780395 121780395 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SNCAIP NM_005460 exon8 c.T1560C p.S520S GGCCTCTCAAGTG . 80.0 29.0 113.0 0.0 . 308 . . Atlas-SNP ZNF608 57507 hgsc.bcm.edu hg19 5 123983650 123983650 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF608 NM_020747 exon4 c.A2427G p.K809K TTTGTCTTTGAGT . 127.0 36.0 169.0 0.0 . 117 . . Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127609596 127609596 + Silent SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FBN2 NM_001999 exon61 c.A7776C p.P2592P ACTGCCTGGAGTG . 150.0 78.0 202.0 0.0 . 858 . . Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127653902 127653902 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FBN2 NM_001999 exon36 c.T4656C p.G1552G ATAGCGACCAGGC . 181.0 94.0 236.0 0.0 . 858 . . Atlas-SNP FNIP1 96459 hgsc.bcm.edu hg19 5 131066598 131066598 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FNIP1 NM_001008738 exon3 c.A353T p.Q118L CTTACCTGGTACT . 115.0 46.0 172.0 0.0 . 104 . . Atlas-SNP PDLIM4 8572 hgsc.bcm.edu hg19 5 131607517 131607517 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PDLIM4 NM_003687 exon6 c.T704A p.L235H GGAACCTCAAGCC . 61.0 18.0 62.0 0.0 . 22 . . Atlas-SNP TCF7 6932 hgsc.bcm.edu hg19 5 133451714 133451714 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TCF7 NM_003202 exon3 c.A431T p.Q144L AGCCGCAGCCCCC . 76.0 35.0 149.0 0.0 . 81 . . Atlas-SNP CDKL3 51265 hgsc.bcm.edu hg19 5 133644327 133644327 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CDKL3 NM_001113575 exon8 c.A973T p.R325W CTTTCCTGAGTTC . 47.0 26.0 57.0 0.0 . 76 . . Atlas-SNP DDX46 9879 hgsc.bcm.edu hg19 5 134109540 134109540 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DDX46 NM_014829 exon5 c.A602G p.E201G GTTTAGAGGACGA . 116.0 69.0 175.0 0.0 . 77 . . Atlas-SNP DNAJC18 202052 hgsc.bcm.edu hg19 5 138760775 138760775 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DNAJC18 NM_152686 exon5 c.A588G p.T196T GTCATCTGTCACA . 53.0 27.0 57.0 0.0 . 30 . . Atlas-SNP PSD2 84249 hgsc.bcm.edu hg19 5 139193135 139193135 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PSD2 NM_032289 exon3 c.T613A p.F205I ATGGCGTTTGAGG . 78.0 49.0 93.0 0.0 . 88 . . Atlas-SNP HARS 3035 hgsc.bcm.edu hg19 5 140056273 140056273 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HARS NM_002109 exon10 c.A1160G p.E387G ATCCGCTCCACCC . 76.0 28.0 120.0 0.0 . 57 . . Atlas-SNP PCDHA3 56145 hgsc.bcm.edu hg19 5 140180880 140180880 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDHA3 NM_031497 exon1 c.A98T p.Y33F TCCACTACTCCGT . 34.0 17.0 25.0 0.0 . 396 . . Atlas-SNP PCDHA7 56141 hgsc.bcm.edu hg19 5 140215472 140215472 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDHA7 NM_031852 exon1 c.C1504G p.R502G GGCGAGCGCGCGC . 50.0 14.0 53.0 0.0 . 367 . . Atlas-SNP PCDHA10 56139 hgsc.bcm.edu hg19 5 140237048 140237048 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDHA10 NM_031859 exon1 c.A1415T p.H472L GCTGCCACATCTT . 78.0 72.0 94.0 0.0 . 358 . . Atlas-SNP PCDHA10 56139 hgsc.bcm.edu hg19 5 140237342 140237342 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDHA10 NM_031859 exon1 c.G1709T p.G570V CCGCTGGCAGCGC . 24.0 21.0 25.0 0.0 . 358 . . Atlas-SNP PCDHA12 56137 hgsc.bcm.edu hg19 5 140257188 140257188 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDHA12 NM_018903 exon1 c.C2131T p.L711L AGCCTGCTGGTGC . 67.0 36.0 78.0 0.0 . 196 . . Atlas-SNP PCDHA13 56136 hgsc.bcm.edu hg19 5 140263324 140263324 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDHA13 NM_031865 exon1 c.T1471A p.S491T CTGGTCTCCTACT . 80.0 37.0 102.0 0.0 . 213 . . Atlas-SNP PCDHB3 56132 hgsc.bcm.edu hg19 5 140480277 140480277 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDHB3 NM_018937 exon1 c.T44C p.L15S AAGTCTTGCTTCT . 77.0 29.0 112.0 0.0 . 208 . . Atlas-SNP PCDHB10 56126 hgsc.bcm.edu hg19 5 140572209 140572209 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDHB10 NM_018930 exon1 c.T84C p.S28S AGGTTCTGGGTTT . 290.0 146.0 377.0 0.0 . 177 . . Atlas-SNP PCDHGA3 56112 hgsc.bcm.edu hg19 5 140725276 140725276 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd PCDHGA3_ENST00000253812,extremity,malignant_melanoma,+1,1 PCDHGA3 NM_032011 exon1 c.C1676T p.A559V ACAACGCGCCCGA . 68.0 26.0 92.0 0.0 . 246 . . Atlas-SNP PCDHGB3 56102 hgsc.bcm.edu hg19 5 140751344 140751344 + Silent SNP A A T rs368442078 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDHGB3 NM_018924 exon1 c.A1383T p.V461V GCATGTAGCTGAG . 64.0 33.0 93.0 0.0 . 168 . . Atlas-SNP PCDHGA10 56106 hgsc.bcm.edu hg19 5 140793269 140793269 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDHGA10 NM_032090 exon1 c.T527A p.L176H ATCAGCTCAGCCC . 54.0 36.0 68.0 0.0 . 114 . . Atlas-SNP PCDHGA10 56106 hgsc.bcm.edu hg19 5 140794504 140794504 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDHGA10 NM_032090 exon1 c.C1762T p.P588S GCAGAGCCCGGCT . 45.0 13.0 50.0 0.0 . 114 . . Atlas-SNP PCDHGC3 5098 hgsc.bcm.edu hg19 5 140856012 140856012 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDHGC3 NM_032402 exon1 c.T329C p.L110S TGGAGTTGGTAGT . 95.0 61.0 108.0 0.0 . 173 . . Atlas-SNP ADRB2 154 hgsc.bcm.edu hg19 5 148206948 148206948 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADRB2 NM_000024 exon1 c.A554G p.Y185C ACTGCTATGCCAA . 51.0 19.0 53.0 0.0 . 42 . . Atlas-SNP SH3TC2 79628 hgsc.bcm.edu hg19 5 148406142 148406142 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SH3TC2 NM_024577 exon12 c.A3046T p.T1016S TGGCGGTATTTAG . 126.0 58.0 167.0 0.0 . 178 . . Atlas-SNP CAMK2A 815 hgsc.bcm.edu hg19 5 149602599 149602599 + Nonsense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CAMK2A NM_015981 exon18 c.G1419A p.W473X GATCTGCCATTTG . 39.0 20.0 61.0 0.0 . 42 . . Atlas-SNP SLC36A2 153201 hgsc.bcm.edu hg19 5 150704910 150704910 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC36A2 NM_181776 exon8 c.T947A p.L316Q TAGCCCAGAGCCG . 40.0 17.0 69.0 0.0 . 71 . . Atlas-SNP FAT2 2196 hgsc.bcm.edu hg19 5 150945854 150945854 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAT2 NM_001447 exon1 c.A2639C p.H880P TCCAGGTGTCCTG . 84.0 33.0 107.0 0.0 . 465 . . Atlas-SNP FAT2 2196 hgsc.bcm.edu hg19 5 150946124 150946124 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAT2 NM_001447 exon1 c.T2369C p.V790A ACTGTTACATTGA . 51.0 24.0 52.0 0.0 . 465 . . Atlas-SNP FAXDC2 10826 hgsc.bcm.edu hg19 5 154200873 154200873 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_032385 exon8 c.C792T p.G264G GTGGTAGCCACAG . 164.0 83.0 217.0 1.0 . . . . Atlas-SNP GEMIN5 25929 hgsc.bcm.edu hg19 5 154287223 154287223 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GEMIN5 NM_015465 exon16 c.A2323G p.N775D CACCATTCTCAAC . 89.0 28.0 132.0 0.0 . 120 . . Atlas-SNP GEMIN5 25929 hgsc.bcm.edu hg19 5 154317547 154317547 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GEMIN5 NM_015465 exon1 c.A147G p.P49P TGTCCCTGGACTC . 127.0 60.0 139.0 0.0 . 120 . . Atlas-SNP SOX30 11063 hgsc.bcm.edu hg19 5 157065688 157065688 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd SOX30,NS,haematopoietic_neoplasm,0,1 SOX30 NM_178424 exon4 c.A1430T p.Q477L GGGCTCTGGACTG . 55.0 29.0 71.0 0.0 . 67 . . Atlas-SNP PWWP2A 114825 hgsc.bcm.edu hg19 5 159519900 159519900 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PWWP2A NM_001130864 exon2 c.A1757T p.D586V GTGCTATCAATGC . 33.0 13.0 41.0 0.0 . 64 . . Atlas-SNP PWWP2A 114825 hgsc.bcm.edu hg19 5 159519933 159519933 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PWWP2A NM_001130864 exon2 c.C1724G p.S575C GAGTCAGATTTCT . 39.0 17.0 45.0 0.0 . 64 . . Atlas-SNP GABRB2 2561 hgsc.bcm.edu hg19 5 160753450 160753450 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GABRB2 NM_021911 exon10 c.T1116C p.Y372Y GGATCGATATTGG . 55.0 16.0 53.0 0.0 . 161 . . Atlas-SNP DOCK2 1794 hgsc.bcm.edu hg19 5 169122911 169122911 + Silent SNP G G T rs199921409 bycluster;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DOCK2 NM_004946 exon10 c.G948T p.T316T GTGCACGCAGGGA . 56.0 16.0 75.0 0.0 . 389 . G|0.999;A|0.001 Atlas-SNP DOCK2 1794 hgsc.bcm.edu hg19 5 169144485 169144485 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DOCK2 NM_004946 exon21 c.A2129T p.Y710F TGGCTTACAAGTA . 64.0 35.0 96.0 0.0 . 389 . . Atlas-SNP DOCK2 1794 hgsc.bcm.edu hg19 5 169188534 169188534 + Missense_Mutation SNP A A C rs370192291 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DOCK2 NM_004946 exon25 c.A2459C p.Y820S TCCTGTATGAGTT . 52.0 20.0 77.0 0.0 . 389 . . Atlas-SNP STC2 8614 hgsc.bcm.edu hg19 5 172744894 172744894 + Nonsense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd STC2,lower_third,carcinoma,0,1 STC2 NM_003714 exon4 c.G865T p.E289X CCCACTCGCTGCT . 49.0 22.0 76.0 2.0 . 59 . . Atlas-SNP NSD1 64324 hgsc.bcm.edu hg19 5 176637954 176637954 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NSD1 NM_022455 exon5 c.A2554G p.I852V AGTGACATAGAAA . 66.0 32.0 88.0 0.0 . 416 . . Atlas-SNP SLC34A1 6569 hgsc.bcm.edu hg19 5 176814993 176814993 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC34A1 NM_001167579 exon7 c.645-2A>T . CTGCCCAGGGCCT . 48.0 27.0 69.0 0.0 . 73 . . Atlas-SNP ZFP2 80108 hgsc.bcm.edu hg19 5 178359135 178359135 + Missense_Mutation SNP A A G rs147320919 bycluster;byfrequency;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZFP2 NM_030613 exon5 c.A821G p.Q274R GTAGTCAATGTGG . 55.0 33.0 90.0 0.0 . 70 . A|1.000;C|0.000 Atlas-SNP FLT4 2324 hgsc.bcm.edu hg19 5 180037027 180037027 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd FLT4_ENST00000261937,NS,carcinoma,0,2 FLT4 NM_182925 exon29 c.3687-2A>T . AATACCTGTGGGG . 47.0 17.0 62.0 1.0 . 356 . . Atlas-SNP ZFP62 643836 hgsc.bcm.edu hg19 5 180278100 180278100 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZFP62 NM_001172638 exon2 c.A395T p.Q132L GTTTTCTGCTGTA . 40.0 11.0 71.0 0.0 . 33 . . Atlas-SNP TRIM41 90933 hgsc.bcm.edu hg19 5 180661725 180661725 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRIM41 NM_033549 exon6 c.C1843A p.P615T GTCTTTCCTTTCT . 50.0 15.0 75.0 0.0 . 96 . . Atlas-SNP PHACTR1 221692 hgsc.bcm.edu hg19 6 12749960 12749960 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PHACTR1 NM_030948 exon4 c.T188A p.V63E GGAGAGTGCGCTC . 38.0 17.0 40.0 0.0 . 94 . . Atlas-SNP PHACTR1 221692 hgsc.bcm.edu hg19 6 13160509 13160509 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PHACTR1 NM_030948 exon6 c.T489C p.Y163Y AATCTATGATAAA . 88.0 24.0 67.0 0.0 . 94 . . Atlas-SNP CCDC90A 63933 hgsc.bcm.edu hg19 6 13791091 13791091 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCDC90A NM_001031713 exon9 c.A1030G p.I344V TAAATATAGACCC . 218.0 92.0 190.0 0.0 . 15 . . Atlas-SNP RNF144B 255488 hgsc.bcm.edu hg19 6 18465185 18465185 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RNF144B NM_182757 exon8 c.A799G p.I267V TTGGGCATCATTG . 135.0 64.0 118.0 0.0 . 18 . . Atlas-SNP TRIM38 10475 hgsc.bcm.edu hg19 6 25983702 25983702 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRIM38 NM_006355 exon8 c.A1185T p.A395A TGTAGCACTTACT . 85.0 32.0 96.0 0.0 . 50 . . Atlas-SNP HFE 3077 hgsc.bcm.edu hg19 6 26091582 26091582 + Silent SNP A A G rs28934595 bycluster;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HFE NM_139006 exon3 c.A381G p.Q127Q AATGCAAGAAGAC . 176.0 81.0 150.0 0.0 . 37 . . Atlas-SNP PGBD1 84547 hgsc.bcm.edu hg19 6 28268678 28268678 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PGBD1 NM_001184743 exon7 c.A1047G p.R349R AGCTCGAGTGAGT . 91.0 48.0 92.0 0.0 . 106 . . Atlas-SNP OR2J3 442186 hgsc.bcm.edu hg19 6 29080029 29080029 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR2J3 NM_001005216 exon1 c.T362A p.M121K TGGTGATGTCCTA . 133.0 55.0 143.0 0.0 . 53 . . Atlas-SNP OR2J2 26707 hgsc.bcm.edu hg19 6 29141976 29141976 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR2J2 NM_030905 exon1 c.A564G p.L188L GCGTTTATCATGT . 81.0 37.0 90.0 0.0 . 51 . . Atlas-SNP OR12D3 81797 hgsc.bcm.edu hg19 6 29343000 29343000 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR12D3 NM_030959 exon1 c.A65T p.Q22L AAAGGCTGCAGCT . 208.0 77.0 250.0 0.0 . 55 . . Atlas-SNP OR10C1 442194 hgsc.bcm.edu hg19 6 29408614 29408614 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR10C1 NM_013941 exon1 c.C822A p.S274S GGTGTCCCTCTTC . 81.0 35.0 90.0 0.0 . 58 . . Atlas-SNP OR2H2 7932 hgsc.bcm.edu hg19 6 29556136 29556136 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR2H2 NM_007160 exon1 c.T415G p.C139G CGCCTGTGCTGGC . 66.0 39.0 97.0 0.0 . 29 . . Atlas-SNP VARS2 57176 hgsc.bcm.edu hg19 6 30892148 30892148 + Silent SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . VARS2 NM_001167734 exon26 c.G2574C p.V858V GCCCGTGCTGTGG . 80.0 36.0 87.0 0.0 . 60 . . Atlas-SNP DPCR1 135656 hgsc.bcm.edu hg19 6 30919181 30919181 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DPCR1 NM_080870 exon2 c.T2940A p.P980P AGAGCCTACAGAA . 70.0 36.0 62.0 0.0 . 99 . . Atlas-SNP MUC21 394263 hgsc.bcm.edu hg19 6 30955029 30955029 + Silent SNP A A T rs41288693 TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MUC21 NM_001010909 exon2 c.A1077T p.T359T CAGCACAGCCACC . 35.0 13.0 29.0 0.0 . 98 . . Atlas-SNP SKIV2L 6499 hgsc.bcm.edu hg19 6 31935153 31935153 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SKIV2L NM_006929 exon21 c.A2582T p.Q861L TCCTACAGGTGAG . 108.0 46.0 83.0 0.0 . 97 . . Atlas-SNP GPSM3 63940 hgsc.bcm.edu hg19 6 32159648 32159648 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPSM3 NM_022107 exon7 c.G183T p.Q61H TTCAGTCTGCAGG . 106.0 21.0 105.0 0.0 . 9 . . Atlas-SNP ITPR3 3710 hgsc.bcm.edu hg19 6 33655094 33655094 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ITPR3 NM_002224 exon45 c.T6167A p.L2056Q ATATCCTGGCGCT . 55.0 28.0 51.0 0.0 . 409 . . Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38816528 38816528 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DNAH8 NM_001206927 exon37 c.A5150G p.Y1717C GGGTTTATCTTGA . 107.0 48.0 107.0 0.0 . 1239 . . Atlas-SNP GLP1R 2740 hgsc.bcm.edu hg19 6 39040694 39040694 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GLP1R NM_002062 exon6 c.T566A p.L189Q TCATCCTGCGAGC . 71.0 43.0 62.0 0.0 . 64 . . Atlas-SNP UBR2 23304 hgsc.bcm.edu hg19 6 42562032 42562032 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UBR2 NM_001184801 exon4 c.A521G p.E174G AAATTGAGGAAGA . 96.0 31.0 92.0 0.0 . 134 . . Atlas-SNP CUL9 23113 hgsc.bcm.edu hg19 6 43155009 43155009 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CUL9 NM_015089 exon6 c.T1413A p.P471P GAATCCTATGGAT . 86.0 35.0 72.0 0.0 . 248 . . Atlas-SNP MEP1A 4224 hgsc.bcm.edu hg19 6 46801092 46801092 + Nonsense_Mutation SNP A A T rs12197930 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MEP1A NM_005588 exon11 c.A1426T p.R476X AATAGCAGAGAAA . 37.0 15.0 55.0 0.0 . 93 . A|0.957;G|0.043 Atlas-SNP DEFB113 245927 hgsc.bcm.edu hg19 6 49937307 49937307 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DEFB113 NM_001037729 exon1 c.T32C p.V11A GTGAAGACAAAGG . 72.0 31.0 84.0 0.0 . 18 . . Atlas-SNP TFAP2D 83741 hgsc.bcm.edu hg19 6 50712859 50712859 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TFAP2D NM_172238 exon6 c.G923T p.C308F ACACTTGTGAAAC . 203.0 91.0 179.0 0.0 . 144 . . Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51890688 51890688 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PKHD1 NM_170724 exon32 c.A3920G p.Q1307R TCTCCTTGCATGG . 96.0 44.0 97.0 0.0 . 927 . . Atlas-SNP MCM3 4172 hgsc.bcm.edu hg19 6 52129386 52129386 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MCM3 NM_002388 exon17 c.A2562T p.X854C GCCTCCTCAGATG . 56.0 28.0 66.0 0.0 . 63 . . Atlas-SNP HCRTR2 3062 hgsc.bcm.edu hg19 6 55142234 55142234 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HCRTR2 NM_001526 exon5 c.A819G p.S273S TGTTTCACAGCCT . 130.0 63.0 161.0 0.0 . 112 . . Atlas-SNP ZNF451 26036 hgsc.bcm.edu hg19 6 56993604 56993604 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF451 NM_001031623 exon5 c.A390T p.A130A AGCAGCAAGACTG . 107.0 32.0 82.0 0.0 . 181 . . Atlas-SNP BAI3 577 hgsc.bcm.edu hg19 6 69348551 69348551 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BAI3 . . . . TTTTACAGGCCAA . 60.0 26.0 80.0 0.0 . 451 . . Atlas-SNP BAI3 577 hgsc.bcm.edu hg19 6 69949085 69949085 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BAI3 NM_001704 exon20 c.C2781T p.L927L TATCCTCATACTG . 89.0 35.0 98.0 0.0 . 451 . . Atlas-SNP COL9A1 1297 hgsc.bcm.edu hg19 6 70935655 70935655 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL9A1 NM_001851 exon37 c.C2561A p.P854H GCTCCAGGCAAAC . 66.0 36.0 83.0 0.0 . 228 . . Atlas-SNP MYO6 4646 hgsc.bcm.edu hg19 6 76576647 76576647 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYO6 NM_004999 exon18 c.1771-2A>T . TTTTTCAGACCCA . 64.0 35.0 63.0 0.0 . 124 . . Atlas-SNP PHIP 55023 hgsc.bcm.edu hg19 6 79770201 79770201 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PHIP NM_017934 exon6 c.A433T p.S145C CAATGCTGGGTGG . 52.0 22.0 62.0 0.0 . 177 . . Atlas-SNP LCA5 167691 hgsc.bcm.edu hg19 6 80223068 80223068 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LCA5 NM_001122769 exon3 c.G581T p.S194I AGTTCACTTTCTG . 148.0 64.0 187.0 0.0 . 71 . . Atlas-SNP C6orf165 154313 hgsc.bcm.edu hg19 6 88128124 88128124 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C6orf165 NM_001031743 exon7 c.A830T p.Q277L TCCTTCAGATCAT . 61.0 28.0 71.0 0.0 . 116 . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90371171 90371171 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MDN1 NM_014611 exon88 c.A14692G p.T4898A TGTCGGTGTCCTC . 103.0 39.0 130.0 0.0 . 478 . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90371808 90371808 + Nonsense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MDN1 NM_014611 exon87 c.G14563T p.E4855X TTACCTCATCTAT . 64.0 29.0 60.0 0.0 . 478 . . Atlas-SNP BACH2 60468 hgsc.bcm.edu hg19 6 90661011 90661011 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BACH2 NM_021813 exon7 c.A814T p.R272W GCCCCCTGGCAAG . 44.0 24.0 55.0 0.0 . 224 . . Atlas-SNP NDUFAF4 29078 hgsc.bcm.edu hg19 6 97339048 97339048 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NDUFAF4 NM_014165 exon3 c.A460T p.K154X AATATTTAAGAAG . 48.0 15.0 59.0 0.0 . 16 . . Atlas-SNP BVES 11149 hgsc.bcm.edu hg19 6 105572512 105572512 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BVES NM_001199563 exon5 c.A558T p.R186R ATGTCCTCGATAG . 30.0 10.0 45.0 0.0 . 33 . . Atlas-SNP BEND3 57673 hgsc.bcm.edu hg19 6 107390413 107390413 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BEND3 NM_001080450 exon5 c.A1982G p.H661R GGCACGTGGACCT . 46.0 21.0 58.0 0.0 . 70 . . Atlas-SNP CDC40 51362 hgsc.bcm.edu hg19 6 110522886 110522886 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CDC40 NM_015891 exon3 c.A402G p.T134T TGCAACATATGGT . 52.0 26.0 75.0 0.0 . 39 . . Atlas-SNP KIAA1919 91749 hgsc.bcm.edu hg19 6 111587672 111587672 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIAA1919 NM_153369 exon4 c.A907G p.I303V AGCAACATTGGCA . 91.0 44.0 113.0 0.0 . 54 . . Atlas-SNP ZUFSP 221302 hgsc.bcm.edu hg19 6 116973312 116973312 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZUFSP NM_145062 exon6 c.A1005T p.T335T CACATCTGTGGCA . 75.0 23.0 97.0 0.0 . 46 . . Atlas-SNP KPNA5 3841 hgsc.bcm.edu hg19 6 117047735 117047735 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KPNA5 NM_002269 exon12 c.A1203T p.A401A AGAAGCAGCTTGG . 134.0 63.0 216.0 0.0 . 57 . . Atlas-SNP GPRC6A 222545 hgsc.bcm.edu hg19 6 117114124 117114124 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPRC6A NM_148963 exon6 c.A1962T p.P654P GTCTTGTGGTTCT . 87.0 45.0 120.0 0.0 . 152 . . Atlas-SNP ROS1 6098 hgsc.bcm.edu hg19 6 117609770 117609770 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ROS1 NM_002944 exon43 c.A6929C p.H2310P TCTGCATGTGGTT . 115.0 51.0 142.0 0.0 . 728 . . Atlas-SNP C6orf170 221322 hgsc.bcm.edu hg19 6 121447529 121447529 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C6orf170 NM_152730 exon26 c.A2978G p.Y993C CCTGTATACTCCA . 48.0 27.0 62.0 0.0 . 146 . . Atlas-SNP SOGA3 387104 hgsc.bcm.edu hg19 6 127837007 127837007 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001012279 exon2 c.A753T p.K251N TCCTTCTTTCCAG . 38.0 19.0 27.0 0.0 . . . . Atlas-SNP THEMIS 387357 hgsc.bcm.edu hg19 6 128150865 128150865 + Silent SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . THEMIS NM_001010923 exon3 c.A465C p.A155A ATTCCTTGCTACT . 74.0 33.0 109.0 0.0 . 168 . . Atlas-SNP LAMA2 3908 hgsc.bcm.edu hg19 6 129498936 129498936 + Silent SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LAMA2 NM_000426 exon10 c.G1392T p.P464P CTACCCGGACTGC . 110.0 47.0 149.0 0.0 . 481 . . Atlas-SNP LAMA2 3908 hgsc.bcm.edu hg19 6 129618940 129618940 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LAMA2 NM_000426 exon21 c.T2967A p.P989P CCAACCTGGAGTC . 50.0 26.0 83.0 0.0 . 481 . . Atlas-SNP LAMA2 3908 hgsc.bcm.edu hg19 6 129636779 129636779 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LAMA2 NM_000426 exon25 c.A3714T p.P1238P ACTTCCAGAACAA . 73.0 30.0 89.0 0.0 . 481 . . Atlas-SNP LAMA2 3908 hgsc.bcm.edu hg19 6 129823895 129823895 + Missense_Mutation SNP A A T rs202202014 by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LAMA2 NM_000426 exon59 c.A8336T p.D2779V CATTTGATGACAC . 75.0 30.0 98.0 0.0 . 481 . A|1.000;G|0.000 Atlas-SNP SAMD3 154075 hgsc.bcm.edu hg19 6 130497042 130497042 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SAMD3 NM_001017373 exon8 c.A766G p.T256A TCCTTGTCTGGCC . 71.0 24.0 77.0 0.0 . 98 . . Atlas-SNP SGK1 6446 hgsc.bcm.edu hg19 6 134638546 134638546 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SGK1 NM_001143676 exon1 c.A53G p.Q18R AAAAATTGGAAGG . 93.0 37.0 138.0 0.0 . 387 . . Atlas-SNP BCLAF1 9774 hgsc.bcm.edu hg19 6 136599666 136599666 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd BCLAF1_ENST00000531224,NS,carcinoma,0,1 BCLAF1 NM_014739 exon4 c.G353A p.R118K ACGGATCTTCTTT . 139.0 33.0 129.0 0.0 . 203 . . Atlas-SNP SLC35D3 340146 hgsc.bcm.edu hg19 6 137245642 137245642 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC35D3 NM_001008783 exon2 c.T1059A p.G353G AGCAGGTGGCCCC . 39.0 14.0 51.0 0.0 . 33 . . Atlas-SNP ECT2L 345930 hgsc.bcm.edu hg19 6 139164260 139164260 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ECT2L NM_001195037 exon5 c.A487G p.T163A GCTGCTACTTATG . 64.0 19.0 68.0 0.0 . 75 . . Atlas-SNP SHPRH 257218 hgsc.bcm.edu hg19 6 146276324 146276324 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SHPRH NM_173082 exon2 c.A135T p.P45P TGAACCTGGGCAG . 35.0 14.0 55.0 0.0 . 169 . . Atlas-SNP SASH1 23328 hgsc.bcm.edu hg19 6 148848610 148848610 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SASH1 NM_015278 exon12 c.T1306C p.Y436H TTTGTGTACAAAG . 49.0 21.0 71.0 0.0 . 123 . . Atlas-SNP ZBTB2 57621 hgsc.bcm.edu hg19 6 151687080 151687080 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZBTB2 NM_020861 exon3 c.A1121C p.Q374P CTTTTCTGGATAA . 125.0 61.0 142.0 0.0 . 30 . . Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152555815 152555815 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SYNE1 NM_182961 exon111 c.A20517G p.L6839L AGCATTTAGATGA . 69.0 31.0 97.0 0.0 . 3227 . . Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152831366 152831366 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SYNE1 NM_033071 exon8 c.G564A p.K188K AGCCTTCTTAGCA . 101.0 9.0 129.0 0.0 . 3227 . . Atlas-SNP MYCT1 80177 hgsc.bcm.edu hg19 6 153043211 153043211 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYCT1 NM_025107 exon2 c.T531A p.P177P ACTTCCTGTGGAA . 77.0 32.0 85.0 0.0 . 48 . . Atlas-SNP NOX3 50508 hgsc.bcm.edu hg19 6 155776903 155776903 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NOX3 NM_015718 exon1 c.T32C p.L11P GTGGAGAGACCCT . 84.0 35.0 95.0 0.0 . 93 . . Atlas-SNP ARID1B 57492 hgsc.bcm.edu hg19 6 157528624 157528624 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ARID1B NM_020732 exon20 c.A6349T p.R2117W TTAGTTAGGTACG . 47.0 21.0 56.0 0.0 . 320 . . Atlas-SNP TAGAP 117289 hgsc.bcm.edu hg19 6 159463252 159463252 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TAGAP NM_138810 exon5 c.T173G p.L58R CAGGACAGCACCT . 105.0 39.0 131.0 0.0 . 75 . . Atlas-SNP IGF2R 3482 hgsc.bcm.edu hg19 6 160469571 160469571 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IGF2R NM_000876 exon18 c.A2510G p.D837G AAAAAGATCAGGT . 49.0 19.0 70.0 0.0 . 251 . . Atlas-SNP PLG 5340 hgsc.bcm.edu hg19 6 161160115 161160115 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PLG NM_000301 exon16 c.A1893G p.S631S GCCTTCATCCTAC . 121.0 48.0 104.0 0.0 . 150 . . Atlas-SNP MAP3K4 4216 hgsc.bcm.edu hg19 6 161523729 161523729 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MAP3K4 NM_006724 exon18 c.3626-2A>T . TCCTGCAGAACCA . 307.0 149.0 396.0 0.0 . 364 . . Atlas-SNP PDE10A 10846 hgsc.bcm.edu hg19 6 165863831 165863831 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PDE10A NM_001130690 exon4 c.A245C p.Q82P ACTCCCTGCATAT . 75.0 26.0 81.0 0.0 . 154 . . Atlas-SNP T 6862 hgsc.bcm.edu hg19 6 166578331 166578331 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . T NM_003181 exon5 c.A625T p.K209X TGTACTTAATTTT . 59.0 34.0 108.0 0.0 . 77 . . Atlas-SNP CCR6 1235 hgsc.bcm.edu hg19 6 167550197 167550197 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCR6 NM_004367 exon3 c.C479A p.T160K CCAGAACACTACC . 58.0 18.0 78.0 0.0 . 36 . . Atlas-SNP SNX8 29886 hgsc.bcm.edu hg19 7 2317782 2317782 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SNX8 NM_013321 exon2 c.A253G p.K85E CCTTCTTCTCCGG . 64.0 25.0 76.0 0.0 . 46 . . Atlas-SNP CARD11 84433 hgsc.bcm.edu hg19 7 2983944 2983944 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CARD11 NM_032415 exon5 c.A586T p.K196X TCACCTTGACCAG . 99.0 45.0 127.0 0.0 . 339 . . Atlas-SNP CARD11 84433 hgsc.bcm.edu hg19 7 2987406 2987406 + Missense_Mutation SNP A A C rs368132142 TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CARD11 NM_032415 exon3 c.T23G p.M8R TCATCCATCTCTG . 103.0 45.0 102.0 0.0 . 339 . . Atlas-SNP FOXK1 221937 hgsc.bcm.edu hg19 7 4794986 4794986 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FOXK1 NM_001037165 exon4 c.A1022G p.Y341C ACCCCTACTACCG . 99.0 29.0 105.0 0.0 . 64 . . Atlas-SNP SLC29A4 222962 hgsc.bcm.edu hg19 7 5336593 5336593 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC29A4 NM_153247 exon7 c.A646G p.S216G TCTCTGAGCCGCA . 24.0 10.0 18.0 0.0 . 52 . . Atlas-SNP TNRC18 84629 hgsc.bcm.edu hg19 7 5410083 5410083 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TNRC18 NM_001080495 exon11 c.A4142C p.Q1381P AAGCTCTGCTCCA . 47.0 20.0 51.0 0.0 . 311 . . Atlas-SNP USP42 84132 hgsc.bcm.edu hg19 7 6183734 6183734 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . USP42 NM_032172 exon9 c.A897T p.P299P GGTTCCAGCTTCA . 64.0 25.0 73.0 0.0 . 138 . . Atlas-SNP GRID2IP 392862 hgsc.bcm.edu hg19 7 6560210 6560210 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GRID2IP NM_001145118 exon7 c.A1267T p.R423W GCCACCTGTGCTG . 67.0 28.0 65.0 0.0 . 82 . . Atlas-SNP COL28A1 340267 hgsc.bcm.edu hg19 7 7530242 7530242 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL28A1 NM_001037763 exon12 c.A1062T p.P354P AGCTCCTGGAGAA . 87.0 39.0 62.0 0.0 . 113 . . Atlas-SNP MIOS 54468 hgsc.bcm.edu hg19 7 7612424 7612424 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MIOS NM_019005 exon4 c.A318G p.K106K AGGAAAAGAGTTT . 89.0 36.0 87.0 0.0 . 68 . . Atlas-SNP ICA1 3382 hgsc.bcm.edu hg19 7 8167517 8167517 + Missense_Mutation SNP T T A rs368311237 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ICA1 NM_022307 exon13 c.A1316T p.Q439L GAGGCCTGTAAGT . 58.0 29.0 68.0 0.0 . 65 . . Atlas-SNP FERD3L 222894 hgsc.bcm.edu hg19 7 19184845 19184845 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FERD3L NM_152898 exon1 c.A141T p.R47R TCCCTCTCGGAGC . 37.0 18.0 44.0 0.0 . 63 . . Atlas-SNP MACC1 346389 hgsc.bcm.edu hg19 7 20193914 20193914 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MACC1 NM_182762 exon6 c.T2248A p.W750R CCCTCCAGCCTTT . 99.0 46.0 94.0 0.0 . 99 . . Atlas-SNP ABCB5 340273 hgsc.bcm.edu hg19 7 20683101 20683101 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ABCB5 NM_001163941 exon7 c.G524C p.S175T AAATCAGTGATGG . 96.0 11.0 102.0 0.0 . 357 . . Atlas-SNP ABCB5 340273 hgsc.bcm.edu hg19 7 20778743 20778743 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ABCB5 NM_001163941 exon24 c.G3005T p.S1002I GCCGCAGTCAAGA . 70.0 25.0 54.0 0.0 . 357 . . Atlas-SNP DNAH11 8701 hgsc.bcm.edu hg19 7 21630534 21630534 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DNAH11 NM_001277115 exon13 c.2170-2A>T . TTTAATAGCTAGT . 194.0 99.0 236.0 0.0 . 584 . . Atlas-SNP HOXA13 3209 hgsc.bcm.edu hg19 7 27238961 27238961 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HOXA13 NM_000522 exon1 c.A736G p.M246V CAGGCATGGGCTG . 83.0 36.0 74.0 0.0 . 25 . . Atlas-SNP TAX1BP1 8887 hgsc.bcm.edu hg19 7 27833956 27833956 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TAX1BP1 NM_006024 exon11 c.T1425C p.N475N TAATAATGTCTTC . 221.0 94.0 224.0 0.0 . 71 . . Atlas-SNP CPVL 54504 hgsc.bcm.edu hg19 7 29103852 29103852 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CPVL NM_019029 exon12 c.964-2A>T . GGTTCCTGGCAGA . 72.0 30.0 65.0 0.0 . 60 . . Atlas-SNP WIPF3 644150 hgsc.bcm.edu hg19 7 29915478 29915478 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . WIPF3 NM_001080529 exon3 c.A123C p.A41A AAGGGCAGATCCG . 168.0 69.0 251.0 0.0 . 46 . . Atlas-SNP CRHR2 1395 hgsc.bcm.edu hg19 7 30739585 30739585 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CRHR2 NM_001202475 exon1 c.G65A p.C22Y AGGAGGCAGAGCA . 39.0 17.0 63.0 0.0 . 104 . . Atlas-SNP PPP1R17 10842 hgsc.bcm.edu hg19 7 31732116 31732116 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_006658 exon2 c.G61T p.D21Y AAGCTAGACCCTC . 90.0 40.0 87.0 0.0 . . . . Atlas-SNP BMPER 168667 hgsc.bcm.edu hg19 7 33976943 33976943 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BMPER NM_133468 exon4 c.T262C p.S88P GTGCTGTCCCGAG . 61.0 25.0 106.0 0.0 . 131 . . Atlas-SNP HERPUD2 64224 hgsc.bcm.edu hg19 7 35733822 35733822 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HERPUD2 NM_022373 exon2 c.A119T p.H40L GATAGATGCGTTT . 59.0 33.0 73.0 0.0 . 47 . . Atlas-SNP ANLN 54443 hgsc.bcm.edu hg19 7 36436005 36436005 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ANLN NM_018685 exon2 c.A149T p.Q50L GTAACCAGCAGCC . 143.0 69.0 187.0 0.0 . 101 . . Atlas-SNP AMPH 273 hgsc.bcm.edu hg19 7 38500915 38500915 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AMPH NM_139316 exon11 c.G985T p.V329F CTGGAACAAAGTT . 75.0 37.0 73.0 0.0 . 157 . . Atlas-SNP ADCY1 107 hgsc.bcm.edu hg19 7 45632453 45632453 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADCY1 NM_021116 exon2 c.G735T p.Q245H CCTGCAGGCCCGG . 124.0 62.0 111.0 0.0 . 187 . . Atlas-SNP ADCY1 107 hgsc.bcm.edu hg19 7 45717819 45717819 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADCY1 NM_021116 exon10 c.C1855T p.L619L CTCATCCTGGCTG . 114.0 48.0 105.0 0.0 . 187 . . Atlas-SNP TNS3 64759 hgsc.bcm.edu hg19 7 47408179 47408179 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TNS3 NM_022748 exon17 c.A2064T p.P688P CGAGCCTGGGGAG . 38.0 13.0 57.0 0.0 . 140 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47870899 47870899 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PKD1L1 NM_138295 exon42 c.A6389C p.Q2130P CAAGGCTGAAGGG . 118.0 50.0 125.0 0.0 . 328 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47970705 47970705 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PKD1L1 NM_138295 exon6 c.A733T p.R245X ACCTTCTGGGAGA . 48.0 22.0 52.0 0.0 . 328 . . Atlas-SNP HUS1 3364 hgsc.bcm.edu hg19 7 48008897 48008897 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HUS1 NM_004507 exon6 c.G559T p.D187Y CTCCATCTAGGTT . 40.0 16.0 42.0 0.0 . 36 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48314790 48314790 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ABCA13 NM_152701 exon17 c.G5527T p.V1843F TGCAATGTCCATG . 66.0 27.0 84.0 0.0 . 1192 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48412076 48412076 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ABCA13 NM_152701 exon33 c.T11115C p.F3705F AAGTTTTGTTAAT . 53.0 21.0 48.0 0.0 . 1192 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48431709 48431709 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ABCA13 NM_152701 exon38 c.A11846T p.K3949M GGACCAAGAAGGA . 126.0 53.0 127.0 0.0 . 1192 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48528889 48528889 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ABCA13 NM_152701 exon48 c.C13239A p.N4413K TCTAAACAACCTT . 169.0 62.0 205.0 0.0 . 1192 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48559635 48559635 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ABCA13 NM_152701 exon53 c.13798-2A>T . CTGTGCAGAATTT . 39.0 10.0 62.0 0.0 . 1192 . . Atlas-SNP IKZF1 10320 hgsc.bcm.edu hg19 7 50450343 50450343 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IKZF1 NM_006060 exon5 c.A527T p.H176L AATGCCACCTCTG . 21.0 14.0 17.0 0.0 . 613 . . Atlas-SNP COBL 23242 hgsc.bcm.edu hg19 7 51095619 51095619 + Silent SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COBL NM_015198 exon10 c.A3174C p.T1058T GCTTTCTGTGCCA . 138.0 66.0 174.0 0.0 . 167 . . Atlas-SNP ZNF727 442319 hgsc.bcm.edu hg19 7 63529267 63529267 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF727 NM_001159522 exon2 c.4-2A>T . TTTTTCAGCGAGT . 49.0 23.0 59.0 0.0 . 35 . . Atlas-SNP ZNF727 442319 hgsc.bcm.edu hg19 7 63538686 63538686 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF727 NM_001159522 exon4 c.A1259T p.E420V ATATGGAAGTGAG . 130.0 66.0 132.0 0.0 . 35 . . Atlas-SNP ZNF736 728927 hgsc.bcm.edu hg19 7 63808697 63808697 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF736 NM_001170905 exon5 c.A456G p.R152R TGGCAGAGGTTTT . 37.0 18.0 39.0 0.0 . 33 . . Atlas-SNP WBSCR17 64409 hgsc.bcm.edu hg19 7 70885934 70885934 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd WBSCR17,right_upper_lobe,carcinoma,0,1 WBSCR17 NM_022479 exon5 c.C805T p.R269C CGGAAGCGTGTGA . 98.0 54.0 97.0 0.0 . 208 . . Atlas-SNP WBSCR17 64409 hgsc.bcm.edu hg19 7 71036347 71036347 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . WBSCR17 NM_022479 exon6 c.T1040G p.M347R CTGGCATGGATGT . 81.0 41.0 99.0 0.0 . 208 . . Atlas-SNP WBSCR27 155368 hgsc.bcm.edu hg19 7 73254767 73254767 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . WBSCR27 NM_152559 exon4 c.A365T p.Q122L GGCTCCTGGCCCA . 83.0 37.0 111.0 0.0 . 21 . . Atlas-SNP HIP1 3092 hgsc.bcm.edu hg19 7 75192502 75192502 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HIP1 NM_005338 exon10 c.A869T p.Q290L GGCAGCTGGGGGA . 72.0 31.0 74.0 0.0 . 91 . . Atlas-SNP PHTF2 57157 hgsc.bcm.edu hg19 7 77567113 77567113 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PHTF2 NM_001127357 exon11 c.A1323T p.A441A GAAAGCAGACATG . 276.0 119.0 289.0 0.0 . 104 . . Atlas-SNP SEMA3C 10512 hgsc.bcm.edu hg19 7 80457899 80457899 + Splice_Site SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SEMA3C NM_006379 exon4 c.264+2T>C . AAACTTACACTCA . 127.0 49.0 130.0 0.0 . 106 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82764680 82764680 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd Q9Y6V0-3,NS,carcinoma,0,3 PCLO NM_014510 exon3 c.T2186A p.L729X TTGGACAAAGAAT . 90.0 36.0 103.0 0.0 . 1506 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82764790 82764790 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCLO NM_014510 exon3 c.G2076T p.Q692H GAGATCCTGTTTT . 95.0 45.0 114.0 0.0 . 1506 . . Atlas-SNP KIAA1324L 222223 hgsc.bcm.edu hg19 7 86571334 86571334 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIAA1324L NM_001142749 exon5 c.T741C p.S247S ACTTACAGAATGA . 85.0 34.0 106.0 0.0 . 225 . . Atlas-SNP C7orf63 79846 hgsc.bcm.edu hg19 7 89917620 89917620 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C7orf63 NM_001039706 exon15 c.G1729T p.G577C CAGAGTGGCTTAG . 94.0 34.0 116.0 0.0 . 158 . . Atlas-SNP C7orf63 79846 hgsc.bcm.edu hg19 7 89936396 89936396 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C7orf63 NM_001039706 exon20 c.A2447G p.Q816R ATGAACAAAAAGT . 135.0 54.0 133.0 0.0 . 158 . . Atlas-SNP AKAP9 10142 hgsc.bcm.edu hg19 7 91724335 91724335 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AKAP9 NM_005751 exon40 c.9579-2A>T . TGACTTAGGTTGG . 60.0 29.0 85.0 0.0 . 788 . . Atlas-SNP LRRD1 401387 hgsc.bcm.edu hg19 7 91792827 91792827 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRRD1 NM_001161528 exon1 c.T1690G p.C564G TACAGCATAAAAT . 177.0 79.0 200.0 0.0 . 35 . . Atlas-SNP LRRD1 401387 hgsc.bcm.edu hg19 7 91794336 91794336 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRRD1 NM_001161528 exon1 c.A181T p.R61X TCTGTCTAGGATG . 76.0 31.0 91.0 0.0 . 35 . . Atlas-SNP RBM48 84060 hgsc.bcm.edu hg19 7 92158171 92158171 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_032120 exon1 c.A44T p.H15L ATCACCACGTCCA . 108.0 50.0 131.0 0.0 . . . . Atlas-SNP SAMD9L 219285 hgsc.bcm.edu hg19 7 92763730 92763730 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SAMD9L NM_152703 exon5 c.A1555G p.R519G TTTCTCTCTGCCA . 55.0 25.0 65.0 0.0 . 227 . . Atlas-SNP PON3 5446 hgsc.bcm.edu hg19 7 95023973 95023973 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PON3 NM_000940 exon2 c.A128T p.H43L ATAAGGTGGCAGT . 81.0 44.0 109.0 0.0 . 59 . . Atlas-SNP ARPC1A 10552 hgsc.bcm.edu hg19 7 98946489 98946489 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ARPC1A NM_006409 exon5 c.A407G p.H136R GCAAGCACATTAA . 158.0 84.0 155.0 0.0 . 38 . . Atlas-SNP ZNF394 84124 hgsc.bcm.edu hg19 7 99097607 99097607 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF394 NM_032164 exon1 c.T110C p.L37S ACGGGCAAAAGTC . 33.0 15.0 25.0 0.0 . 48 . . Atlas-SNP NYAP1 222950 hgsc.bcm.edu hg19 7 100086259 100086259 + Silent SNP A A T rs140403396 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_173564 exon4 c.A915T p.S305S AGCTTCAGCCCTC . 57.0 30.0 69.0 0.0 . . . A|0.998;C|0.002 Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100674961 100674961 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MUC17 NM_001040105 exon3 c.C264A p.N88K CACCAACCCTGAG . 113.0 61.0 116.0 0.0 . 804 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100685847 100685847 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MUC17 NM_001040105 exon3 c.C11150A p.P3717H CAACACCTTCTGT . 29.0 12.0 32.0 0.0 . 804 . . Atlas-SNP TMEM168 64418 hgsc.bcm.edu hg19 7 112407617 112407617 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMEM168 NM_022484 exon5 c.A1729G p.I577V CTTCAATATCTAC . 84.0 27.0 122.0 0.0 . 84 . . Atlas-SNP GPR85 54329 hgsc.bcm.edu hg19 7 112724069 112724069 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPR85 NM_001146265 exon3 c.T708A p.S236R CTGGCCACTGGCT . 55.0 23.0 72.0 0.0 . 49 . . Atlas-SNP PPP1R3A 5506 hgsc.bcm.edu hg19 7 113519017 113519017 + Nonsense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PPP1R3A NM_002711 exon4 c.C2130A p.C710X TTCACAGCACACT . 54.0 27.0 76.0 0.0 . 317 . . Atlas-SNP PPP1R3A 5506 hgsc.bcm.edu hg19 7 113520088 113520088 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PPP1R3A NM_002711 exon4 c.A1059T p.A353A CCCCTCTGCTTTA . 137.0 63.0 135.0 0.0 . 317 . . Atlas-SNP NAA38 51691 hgsc.bcm.edu hg19 7 117828430 117828430 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NAA38 NM_016200 exon3 c.A171T p.L57L GGTACTAGGATTA . 62.0 24.0 67.0 0.0 . 16 . . Atlas-SNP PTPRZ1 5803 hgsc.bcm.edu hg19 7 121684539 121684539 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PTPRZ1 NM_002851 exon23 c.C6001A p.L2001M GAGGTGCTGGACA . 81.0 38.0 70.0 0.0 . 605 . . Atlas-SNP RNF148 378925 hgsc.bcm.edu hg19 7 122342188 122342188 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RNF148 NM_198085 exon1 c.A617G p.Y206C TCTAAGTAAAAGT . 44.0 23.0 41.0 0.0 . 71 . . Atlas-SNP SPAM1 6677 hgsc.bcm.edu hg19 7 123593884 123593884 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPAM1 NM_153189 exon3 c.G260T p.G87V GGCAAGGTGTTAC . 89.0 43.0 104.0 0.0 . 195 . . Atlas-SNP PAX4 5078 hgsc.bcm.edu hg19 7 127251726 127251726 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PAX4 NM_006193 exon8 c.C752A p.S251Y CCAGGGGACTGCT . 22.0 12.0 27.0 0.0 . 66 . . Atlas-SNP LRRC4 64101 hgsc.bcm.edu hg19 7 127670231 127670231 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRRC4 NM_022143 exon2 c.C463T p.R155C TGTTGCGAAGCCA . 41.0 17.0 61.0 0.0 . 72 . . Atlas-SNP CCDC136 64753 hgsc.bcm.edu hg19 7 128449649 128449649 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCDC136 NM_022742 exon11 c.A1751T p.E584V AGGAAGAGCTGCA . 118.0 60.0 149.0 0.0 . 170 . . Atlas-SNP FLNC 2318 hgsc.bcm.edu hg19 7 128488063 128488063 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FLNC NM_001127487 exon26 c.A4521T p.P1507P CACCCCAGCCACT . 138.0 50.0 152.0 0.0 . 339 . . Atlas-SNP FLNC 2318 hgsc.bcm.edu hg19 7 128494857 128494857 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FLNC NM_001458 exon42 c.T7026A p.A2342A GGAGGCTGGCGCT . 56.0 24.0 66.0 0.0 . 339 . . Atlas-SNP SSMEM1 0 hgsc.bcm.edu hg19 7 129847933 129847933 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_145268 exon1 c.G183T p.W61C TGTCTGGGTAGGA . 70.0 37.0 57.0 0.0 . . . . Atlas-SNP CALD1 800 hgsc.bcm.edu hg19 7 134613624 134613624 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CALD1 NM_033157 exon4 c.A191T p.D64V TGACCGACCAGGT . 85.0 40.0 95.0 0.0 . 150 . . Atlas-SNP SLC13A4 26266 hgsc.bcm.edu hg19 7 135378973 135378973 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC13A4 NM_012450 exon10 c.T1030A p.C344S GAGAGCAGGTCTC . 53.0 29.0 31.0 0.0 . 56 . . Atlas-SNP CHRM2 1129 hgsc.bcm.edu hg19 7 136700927 136700927 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CHRM2 NM_001006632 exon3 c.T1315A p.C439S CCTGCCTGCTATG . 148.0 63.0 163.0 0.0 . 167 . . Atlas-SNP DGKI 9162 hgsc.bcm.edu hg19 7 137170144 137170144 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DGKI NM_004717 exon24 c.T2403A p.S801S GGAGCCAGAAGAA . 190.0 97.0 237.0 0.0 . 335 . . Atlas-SNP ZC3HAV1 56829 hgsc.bcm.edu hg19 7 138749665 138749665 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZC3HAV1 NM_024625 exon8 c.A1953G p.P651P CTGAAATGGCACA . 72.0 36.0 58.0 0.0 . 75 . . Atlas-SNP DENND2A 27147 hgsc.bcm.edu hg19 7 140301960 140301960 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DENND2A NM_015689 exon1 c.G238T p.V80L TCTCCACCGTAGA . 159.0 66.0 207.0 0.0 . 132 . . Atlas-SNP DENND2A 27147 hgsc.bcm.edu hg19 7 140301961 140301961 + Silent SNP C C A rs368178368 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DENND2A NM_015689 exon1 c.G237T p.T79T CTCCACCGTAGAG . 160.0 67.0 209.0 0.0 . 132 . . Atlas-SNP PRSS58 136541 hgsc.bcm.edu hg19 7 141952141 141952141 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PRSS58 NM_001001317 exon6 c.T626G p.L209R AAAGACAGGATTC . 119.0 45.0 123.0 0.0 . 41 . . Atlas-SNP TRPV5 56302 hgsc.bcm.edu hg19 7 142612494 142612494 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd .,1 TRPV5 NM_019841 exon10 c.G1269T p.G423G GAATGGCCCCCCA . 188.0 83.0 264.0 0.0 . 164 . . Atlas-SNP FAM131B 9715 hgsc.bcm.edu hg19 7 143054107 143054107 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd FAM131B_ENST00000443739,NS,carcinoma,0,2 FAM131B NM_001031690 exon7 c.G619T p.A207S CTTGAGCCAGGGC . 99.0 44.0 132.0 0.0 . 104 . . Atlas-SNP NOM1 64434 hgsc.bcm.edu hg19 7 156742760 156742760 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NOM1 NM_138400 exon1 c.T329A p.L110Q CCGGCCTGGGAGG . 19.0 10.0 4.0 0.0 . 73 . . Atlas-SNP DNAJB6 10049 hgsc.bcm.edu hg19 7 157160147 157160147 + Nonsense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DNAJB6 NM_058246 exon5 c.G316T p.G106X TTTGGTGGAAGGG . 59.0 29.0 75.0 0.0 . 39 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 2823327 2823327 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CSMD1 NM_033225 exon59 c.A9250T p.R3084W TCCACCTGCCGTC . 61.0 43.0 134.0 0.0 . 1469 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 2944651 2944651 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CSMD1 NM_033225 exon49 c.A7442T p.Y2481F CACTGGTACATGC . 17.0 14.0 64.0 0.0 . 1469 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 2964161 2964161 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CSMD1 NM_033225 exon46 c.G6838T p.D2280Y CAAAATCTCCTAG . 49.0 38.0 121.0 0.0 . 1469 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 3216815 3216815 + Silent SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CSMD1 NM_033225 exon21 c.C3163A p.R1055R TTCTTCGGCTGAA . 59.0 48.0 110.0 0.0 . 1469 . . Atlas-SNP USP17L1P 401447 hgsc.bcm.edu hg19 8 7190945 7190945 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001256873 exon1 c.G1037C p.W346S TCCAGTGGTATAA . 86.0 71.0 88.0 0.0 . . . . Atlas-SNP KIAA1967 57805 hgsc.bcm.edu hg19 8 22476767 22476767 + Missense_Mutation SNP C C G rs201420827 bycluster;by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIAA1967 NM_021174 exon20 c.C2626G p.R876G ACCGCCCGGACGG . 28.0 11.0 58.0 0.0 . 72 . C|1.000;T|0.000 Atlas-SNP ADAM7 8756 hgsc.bcm.edu hg19 8 24346837 24346837 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAM7 NM_003817 exon12 c.C1257T p.G419G CTGTGGCCCTGCT . 32.0 24.0 53.0 0.0 . 165 . . Atlas-SNP ZNF395 55893 hgsc.bcm.edu hg19 8 28206270 28206270 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF395 NM_018660 exon10 c.G1508A p.R503Q TTCCACCGGCAGG . 24.0 24.0 91.0 0.0 . 54 . . Atlas-SNP UNC5D 137970 hgsc.bcm.edu hg19 8 35631946 35631946 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UNC5D NM_080872 exon16 c.G2608T p.A870S CCCAATGCCAAAG . 58.0 47.0 103.0 0.0 . 393 . . Atlas-SNP IDO1 3620 hgsc.bcm.edu hg19 8 39785506 39785506 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IDO1 NM_002164 exon10 c.T1014A p.A338A GAAAGCTCTGGTC . 95.0 48.0 140.0 0.0 . 43 . . Atlas-SNP C8orf4 56892 hgsc.bcm.edu hg19 8 40011185 40011185 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C8orf4 NM_020130 exon1 c.A134C p.Q45P CAGACCAAGAATC . 70.0 39.0 102.0 0.0 . 7 . . Atlas-SNP ANK1 286 hgsc.bcm.edu hg19 8 41519015 41519015 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ANK1 NM_000037 exon42 c.A5612T p.K1871M GCCCGCTTCACTA . 44.0 16.0 44.0 0.0 . 497 . . Atlas-SNP MOS 4342 hgsc.bcm.edu hg19 8 57026368 57026368 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MOS NM_005372 exon1 c.G174T p.E58D CACCTGCTCCCAG . 52.0 28.0 66.0 0.0 . 63 . . Atlas-SNP NSMAF 8439 hgsc.bcm.edu hg19 8 59498516 59498516 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NSMAF NM_001144772 exon29 c.T2583C p.N861N AATGACATTAAGA . 64.0 21.0 77.0 0.0 . 156 . . Atlas-SNP TRPA1 8989 hgsc.bcm.edu hg19 8 72983964 72983964 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRPA1 NM_007332 exon2 c.A250T p.R84X AATCTCTGGTGAT . 69.0 27.0 73.0 0.0 . 256 . . Atlas-SNP SLC7A13 157724 hgsc.bcm.edu hg19 8 87229922 87229922 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC7A13 NM_138817 exon3 c.A956T p.Q319L CCCTCTTGGCTTG . 116.0 55.0 134.0 0.0 . 97 . . Atlas-SNP CNBD1 168975 hgsc.bcm.edu hg19 8 88365947 88365947 + Silent SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CNBD1 NM_173538 exon10 c.T1236G p.P412P AGTTCCTTTCACG . 451.0 189.0 516.0 0.0 . 206 . . Atlas-SNP NBN 4683 hgsc.bcm.edu hg19 8 90995076 90995076 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NBN NM_002485 exon2 c.A45G p.P15P TCTGTATGGTTCT . 89.0 41.0 114.0 0.0 . 86 . . Atlas-SNP SLC26A7 115111 hgsc.bcm.edu hg19 8 92401631 92401631 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC26A7 NM_134266 exon16 c.T1741A p.F581I TTTACCTTTTTTG . 71.0 34.0 113.0 0.0 . 207 . . Atlas-SNP RUNX1T1 862 hgsc.bcm.edu hg19 8 92983058 92983058 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RUNX1T1 NM_001198679 exon11 c.T1544A p.V515E CGCTTCACCTCAT . 32.0 14.0 36.0 0.0 . 516 . . Atlas-SNP RUNX1T1 862 hgsc.bcm.edu hg19 8 92998408 92998408 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd RUNX1T1_ENST00000436581,NS,carcinoma,0,3 RUNX1T1 NM_001198679 exon9 c.G1400A p.S467N CTGCTACTGCCGC . 73.0 27.0 88.0 0.0 . 516 . . Atlas-SNP TMEM67 91147 hgsc.bcm.edu hg19 8 94798504 94798504 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMEM67 NM_153704 exon13 c.G1342A p.V448I GATGCAGTAAGTG . 55.0 20.0 51.0 0.0 . 187 . . Atlas-SNP KIAA1429 25962 hgsc.bcm.edu hg19 8 95501074 95501074 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIAA1429 NM_015496 exon24 c.C5299A p.P1767T CCCGAGGACTTGG . 66.0 35.0 109.0 0.0 . 176 . . Atlas-SNP CCNE2 9134 hgsc.bcm.edu hg19 8 95906153 95906153 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCNE2 NM_057749 exon4 c.A131T p.E44V ACCTCCTCTCTTC . 118.0 46.0 151.0 0.0 . 29 . . Atlas-SNP RNF19A 25897 hgsc.bcm.edu hg19 8 101287279 101287279 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RNF19A NM_015435 exon4 c.A785T p.Q262L CAGGTCTGGTTGG . 112.0 55.0 128.0 0.0 . 67 . . Atlas-SNP GRHL2 79977 hgsc.bcm.edu hg19 8 102611327 102611327 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GRHL2 NM_024915 exon8 c.A1046G p.E349G TTGAAGAGATTGC . 71.0 29.0 69.0 0.0 . 68 . . Atlas-SNP RIMS2 9699 hgsc.bcm.edu hg19 8 104924293 104924293 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RIMS2 NM_001100117 exon6 c.T1705G p.W569G GTAACCTGGCAAC . 57.0 26.0 53.0 0.0 . 1357 . . Atlas-SNP ZFPM2 23414 hgsc.bcm.edu hg19 8 106813460 106813460 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZFPM2 NM_012082 exon8 c.C1150A p.L384I CAGGAGCTCCATG . 106.0 48.0 137.0 0.0 . 219 . . Atlas-SNP ZFPM2 23414 hgsc.bcm.edu hg19 8 106813461 106813461 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZFPM2 NM_012082 exon8 c.T1151C p.L384P AGGAGCTCCATGT . 105.0 48.0 137.0 0.0 . 219 . . Atlas-SNP OXR1 55074 hgsc.bcm.edu hg19 8 107691475 107691475 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OXR1 NM_001198532 exon3 c.A261G p.G87G AGATGGAAGACGA . 137.0 60.0 184.0 0.0 . 190 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113237150 113237150 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd CSMD3_ENST00000343508,NS,carcinoma,0,2 CSMD3 NM_198123 exon71 c.T10974A p.P3658P TGTTTTAGGTGCA . 102.0 32.0 105.0 0.0 . 2325 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113702110 113702110 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CSMD3 NM_198123 exon14 c.A2142T p.I714I GATGGGTATGTTT . 89.0 43.0 99.0 0.0 . 2325 . . Atlas-SNP TNFRSF11B 4982 hgsc.bcm.edu hg19 8 119936998 119936998 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TNFRSF11B NM_002546 exon5 c.T821A p.I274N AGGTCAATATCTG . 58.0 31.0 80.0 0.0 . 87 . . Atlas-SNP ENPP2 5168 hgsc.bcm.edu hg19 8 120594814 120594814 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ENPP2 NM_006209 exon19 c.T1728C p.N576N CCCATTATTAGGA . 89.0 34.0 63.0 0.0 . 254 . . Atlas-SNP KLHL38 340359 hgsc.bcm.edu hg19 8 124664565 124664565 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KLHL38 NM_001081675 exon1 c.T602C p.M201T CAAACCATGAGGG . 80.0 36.0 88.0 0.0 . 81 . . Atlas-SNP FER1L6 654463 hgsc.bcm.edu hg19 8 124987506 124987506 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FER1L6 NM_001039112 exon8 c.A643T p.T215S TTGAAGACCAGCC . 216.0 95.0 323.0 0.0 . 268 . . Atlas-SNP FER1L6 654463 hgsc.bcm.edu hg19 8 124998413 124998413 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FER1L6 NM_001039112 exon12 c.A1516G p.I506V GTTTCTATTGGTA . 60.0 19.0 72.0 0.0 . 268 . . Atlas-SNP ASAP1 50807 hgsc.bcm.edu hg19 8 131130809 131130809 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ASAP1 NM_018482 exon19 c.A1720T p.R574W AATCCCTGGATTT . 87.0 36.0 112.0 0.0 . 133 . . Atlas-SNP TRAPPC9 83696 hgsc.bcm.edu hg19 8 140898164 140898164 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRAPPC9 NM_031466 exon21 c.A3308C p.Q1103P ACGAGCTGGTTCA . 208.0 101.0 257.0 1.0 . 114 . . Atlas-SNP DENND3 22898 hgsc.bcm.edu hg19 8 142185462 142185462 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DENND3 NM_014957 exon14 c.A2199T p.L733L AAACCTAGGCGTT . 76.0 32.0 102.0 0.0 . 127 . . Atlas-SNP DENND3 22898 hgsc.bcm.edu hg19 8 142188201 142188201 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DENND3 NM_014957 exon16 c.C2502A p.V834V CAACGTCTTGCTG . 38.0 25.0 51.0 0.0 . 127 . . Atlas-SNP TSNARE1 203062 hgsc.bcm.edu hg19 8 143425368 143425368 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TSNARE1 NM_145003 exon4 c.A704C p.Q235P AGGGCCTGGCAAG . 71.0 26.0 79.0 0.0 . 59 . . Atlas-SNP FAM83H 286077 hgsc.bcm.edu hg19 8 144808647 144808647 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAM83H NM_198488 exon5 c.A2984T p.Q995L TCGGGTTGGCCGT . 27.0 13.0 31.0 0.0 . 68 . . Atlas-SNP SLC52A2 79581 hgsc.bcm.edu hg19 8 145584307 145584307 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_024531 exon4 c.G1059A p.L353L CTACCTGATGGCG . 18.0 10.0 18.0 0.0 . . . . Atlas-SNP RANBP6 26953 hgsc.bcm.edu hg19 9 6012662 6012662 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RANBP6 NM_012416 exon1 c.A2946T p.S982S TATTGCTGAGATA . 77.0 8.0 171.0 0.0 . 127 . . Atlas-SNP KDM4C 23081 hgsc.bcm.edu hg19 9 7046860 7046860 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KDM4C NM_001146696 exon16 c.2326-2A>T . CCCCCCAGGAATG . 29.0 27.0 90.0 0.0 . 186 . . Atlas-SNP PTPRD 5789 hgsc.bcm.edu hg19 9 8486105 8486105 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PTPRD NM_002839 exon28 c.G2712A p.G904G CTCCTCCCCAAAG . 115.0 59.0 108.0 0.0 . 1348 . . Atlas-SNP CER1 9350 hgsc.bcm.edu hg19 9 14722169 14722169 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CER1 NM_005454 exon1 c.A502T p.S168C CCTGGCTGAAGGG . 67.0 31.0 72.0 0.0 . 41 . . Atlas-SNP SNAPC3 6619 hgsc.bcm.edu hg19 9 15447091 15447091 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SNAPC3 NM_001039697 exon5 c.583-2A>T . ACTTTTAGCACAA . 132.0 57.0 121.0 0.0 . 28 . . Atlas-SNP BNC2 54796 hgsc.bcm.edu hg19 9 16437127 16437127 + Silent SNP G G T rs183551262 bycluster;by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BNC2 NM_017637 exon6 c.C1065A p.P355P AAGGCTGGGTTCC . 110.0 38.0 110.0 0.0 . 166 . G|1.000;A|0.000 Atlas-SNP SH3GL2 6456 hgsc.bcm.edu hg19 9 17793437 17793437 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SH3GL2 NM_003026 exon8 c.T801A p.T267T TCCAACTGGAGAC . 121.0 61.0 135.0 0.0 . 60 . . Atlas-SNP ADAMTSL1 92949 hgsc.bcm.edu hg19 9 18892464 18892464 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAMTSL1 NM_001040272 exon26 c.A4721G p.K1574R GTCAAAAGCTGAA . 66.0 27.0 61.0 0.0 . 306 . . Atlas-SNP MLLT3 4300 hgsc.bcm.edu hg19 9 20413886 20413886 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MLLT3 NM_004529 exon5 c.T958A p.C320S CAGAACAAGTGAG . 104.0 48.0 126.0 0.0 . 125 . . Atlas-SNP IFNA16 3449 hgsc.bcm.edu hg19 9 21217242 21217242 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IFNA16 NM_002173 exon1 c.T63C p.S21S GCCCAGAGAACAG . 233.0 61.0 192.0 0.0 . 27 . . Atlas-SNP IFNA5 3442 hgsc.bcm.edu hg19 9 21305011 21305011 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IFNA5 NM_002169 exon1 c.A245C p.E82A ATCATCTCATGGA . 95.0 65.0 95.0 0.0 . 21 . . Atlas-SNP IFNA8 3445 hgsc.bcm.edu hg19 9 21409216 21409216 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IFNA8 NM_002170 exon1 c.T41A p.L14H TGGTGCTCAGCTA . 70.0 34.0 47.0 0.0 . 19 . . Atlas-SNP UBAP2 55833 hgsc.bcm.edu hg19 9 33953474 33953474 + Splice_Site SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UBAP2 NM_018449 exon13 c.867-2A>G . CAATGCTAAGCAG . 91.0 46.0 104.0 0.0 . 82 . . Atlas-SNP CA9 768 hgsc.bcm.edu hg19 9 35674105 35674105 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CA9 NM_001216 exon1 c.G149T p.G50V CCTTGGGAGGAGG . 75.0 38.0 58.0 0.0 . 48 . . Atlas-SNP TLN1 7094 hgsc.bcm.edu hg19 9 35724956 35724956 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TLN1 NM_006289 exon4 c.G229T p.D77Y TAGTGTCCTGTTA . 62.0 21.0 86.0 0.0 . 185 . . Atlas-SNP RGP1 9827 hgsc.bcm.edu hg19 9 35752015 35752015 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RGP1 NM_001080496 exon8 c.A825G p.A275A TGGGGCAGGGGGT . 92.0 35.0 112.0 0.0 . 60 . . Atlas-SNP OR2S2 56656 hgsc.bcm.edu hg19 9 35957519 35957519 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR2S2 NM_019897 exon1 c.A577G p.I193V TGGAAATGTCAGC . 79.0 45.0 86.0 0.0 . 46 . . Atlas-SNP TMEM252 169693 hgsc.bcm.edu hg19 9 71155621 71155621 + Missense_Mutation SNP T T A rs372500287 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_153237 exon1 c.A110T p.Q37L CTCCCCTGACAGT . 168.0 57.0 114.0 0.0 . . . . Atlas-SNP TRPM6 140803 hgsc.bcm.edu hg19 9 77418778 77418778 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRPM6 NM_017662 exon15 c.A1663G p.R555G CATTTCTATTTCC . 95.0 31.0 71.0 0.0 . 377 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79324425 79324425 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PRUNE2 NM_015225 exon8 c.T2765C p.F922S TCCTCAAAAAGGT . 170.0 41.0 138.0 0.0 . 331 . . Atlas-SNP KIF27 55582 hgsc.bcm.edu hg19 9 86495242 86495242 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIF27 NM_017576 exon11 c.A2613T p.A871A AATTACTGCATCC . 66.0 18.0 72.0 0.0 . 103 . . Atlas-SNP NTRK2 4915 hgsc.bcm.edu hg19 9 87325598 87325598 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NTRK2 NM_001018065 exon6 c.A475T p.I159F ATGTGGATCAAGA . 172.0 157.0 119.0 0.0 . 331 . . Atlas-SNP C9orf153 389766 hgsc.bcm.edu hg19 9 88842778 88842778 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C9orf153 NM_001276368 exon4 c.T234A p.P78P GATAACAGGTTGG . 99.0 43.0 97.0 0.0 . 10 . . Atlas-SNP SPATA31E1 286234 hgsc.bcm.edu hg19 9 90501957 90501957 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_178828 exon4 c.T2555C p.L852P CAGACCTCCAGTC . 63.0 21.0 79.0 0.0 . . . . Atlas-SNP SEMA4D 10507 hgsc.bcm.edu hg19 9 92002518 92002518 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd SEMA4D,NS,NS,0,1 SEMA4D NM_006378 exon14 c.C1113G p.I371M GCTGTCGATGCAC . 83.0 10.0 94.0 0.0 . 81 . . Atlas-SNP ROR2 4920 hgsc.bcm.edu hg19 9 94488970 94488970 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ROR2 NM_004560 exon8 c.A1239T p.A413A TGGAATTGCGATG . 57.0 25.0 71.0 0.0 . 167 . . Atlas-SNP WNK2 65268 hgsc.bcm.edu hg19 9 96051121 96051121 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . WNK2 NM_006648 exon19 c.T4085A p.L1362Q GCTTTCTAGCCAG . 161.0 58.0 199.0 0.0 . 277 . . Atlas-SNP C9orf3 84909 hgsc.bcm.edu hg19 9 97522798 97522798 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C9orf3 NM_001193331 exon2 c.A733T p.R245W GCTATCAGGATAT . 60.0 22.0 54.0 0.0 . 100 . . Atlas-SNP HABP4 22927 hgsc.bcm.edu hg19 9 99250387 99250387 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HABP4 NM_014282 exon7 c.A1016G p.Y339C ATGACTATGAGGA . 67.0 22.0 76.0 0.0 . 25 . . Atlas-SNP CDC14B 8555 hgsc.bcm.edu hg19 9 99286009 99286009 + Splice_Site SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CDC14B NM_001077181 exon11 c.836-2A>G . GCCAGCTAGGAAA . 153.0 134.0 188.0 0.0 . 64 . . Atlas-SNP HEMGN 55363 hgsc.bcm.edu hg19 9 100698475 100698475 + Nonsense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd HEMGN,NS,malignant_melanoma,0,1 HEMGN NM_197978 exon2 c.G151T p.E51X ATGTTTCCTTTTC . 67.0 21.0 151.0 0.0 . 55 . . Atlas-SNP NR4A3 8013 hgsc.bcm.edu hg19 9 102590707 102590707 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NR4A3 NM_173200 exon4 c.T416A p.L139Q AGGTGCTGCCCAG . 19.0 14.0 37.0 0.0 . 80 . . Atlas-SNP CYLC2 1539 hgsc.bcm.edu hg19 9 105767379 105767379 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd CYLC2,right_upper_lobe,carcinoma,0,1 CYLC2 NM_001340 exon5 c.G466T p.D156Y AAGCTAGATGCAA . 71.0 59.0 135.0 0.0 . 109 . . Atlas-SNP CYLC2 1539 hgsc.bcm.edu hg19 9 105767380 105767380 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CYLC2 NM_001340 exon5 c.A467C p.D156A AGCTAGATGCAAA . 71.0 9.0 134.0 0.0 . 109 . . Atlas-SNP ABCA1 19 hgsc.bcm.edu hg19 9 107620923 107620923 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ABCA1 NM_005502 exon7 c.A600T p.S200S CTCTTCTGATTTT . 81.0 70.0 139.0 0.0 . 244 . . Atlas-SNP AKNA 80709 hgsc.bcm.edu hg19 9 117106039 117106039 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AKNA NM_030767 exon19 c.A3706G p.N1236D TGCCATTGCCTTT . 63.0 44.0 113.0 0.0 . 119 . . Atlas-SNP AKNA 80709 hgsc.bcm.edu hg19 9 117118383 117118383 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AKNA NM_030767 exon14 c.A2880T p.A960A CACAGATGCAGCA . 30.0 21.0 75.0 0.0 . 119 . . Atlas-SNP DAB2IP 153090 hgsc.bcm.edu hg19 9 124522473 124522473 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DAB2IP NM_032552 exon6 c.A841C p.K281Q GTGGAGAAGTGGT . 27.0 22.0 60.0 0.0 . 150 . . Atlas-SNP OR1L3 26735 hgsc.bcm.edu hg19 9 125437543 125437543 + Silent SNP C C T rs367667552 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR1L3 NM_001005234 exon1 c.C135T p.I45I GCTCATCATCTTG . 47.0 42.0 114.0 0.0 . 51 . . Atlas-SNP RABGAP1 23637 hgsc.bcm.edu hg19 9 125782674 125782674 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RABGAP1 NM_012197 exon13 c.A1730T p.Q577L TCTGGCAGCTGCT . 27.0 23.0 59.0 0.0 . 164 . . Atlas-SNP LHX2 9355 hgsc.bcm.edu hg19 9 126794984 126794984 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LHX2 NM_004789 exon5 c.T1219C p.X407Q CTTTTCTAATGAC . 72.0 57.0 157.0 0.0 . 30 . . Atlas-SNP GAPVD1 26130 hgsc.bcm.edu hg19 9 128124887 128124887 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GAPVD1 NM_015635 exon27 c.A4326G p.A1442A CTAGGCAAATCCA . 30.0 23.0 62.0 0.0 . 124 . . Atlas-SNP QRFP 347148 hgsc.bcm.edu hg19 9 133768976 133768976 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . QRFP NM_198180 exon1 c.T250A p.C84S ATCTGCAGCCAGC . 38.0 34.0 101.0 0.0 . 14 . . Atlas-SNP TSC1 7248 hgsc.bcm.edu hg19 9 135779040 135779040 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TSC1 NM_000368 exon17 c.A2206G p.M736V TCACCATGGCAGC . 47.0 38.0 78.0 0.0 . 167 . . Atlas-SNP C9orf96 169436 hgsc.bcm.edu hg19 9 136270407 136270407 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C9orf96 NM_153710 exon18 c.T1905C p.S635S CAGTAGTATGAAG . 12.0 10.0 23.0 0.0 . 77 . . Atlas-SNP TMEM8C 389827 hgsc.bcm.edu hg19 9 136384125 136384125 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMEM8C NM_001080483 exon3 c.A270T p.E90D CTTGGGTTCGTCG . 22.0 17.0 68.0 0.0 . 32 . . Atlas-SNP KCNT1 57582 hgsc.bcm.edu hg19 9 138656968 138656968 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KCNT1 NM_020822 exon12 c.T1127A p.L376Q TGGTCCTGTGTGT . 62.0 45.0 136.0 0.0 . 139 . . Atlas-SNP SLC34A3 142680 hgsc.bcm.edu hg19 9 140127698 140127698 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC34A3 NM_001177317 exon7 c.T598A p.W200R TTCAACTGGCTCA . 26.0 22.0 59.0 0.0 . 32 . . Atlas-SNP EHMT1 79813 hgsc.bcm.edu hg19 9 140695341 140695341 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EHMT1 NM_024757 exon18 c.G2617T p.G873C GACGGAGGCTGGA . 58.0 45.0 134.0 0.0 . 196 . . Atlas-SNP DIP2C 22982 hgsc.bcm.edu hg19 10 395294 395294 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DIP2C NM_014974 exon25 c.A3086T p.H1029L GCCACGTGGTCGC . 33.0 16.0 29.0 0.0 . 195 . . Atlas-SNP PFKFB3 5209 hgsc.bcm.edu hg19 10 6255708 6255708 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PFKFB3 NM_004566 exon2 c.A199G p.K67E CCCACAAAAGGTG . 55.0 29.0 45.0 0.0 . 82 . . Atlas-SNP SFMBT2 57713 hgsc.bcm.edu hg19 10 7213990 7213990 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SFMBT2 NM_001029880 exon19 c.T2282C p.V761A AGGGTGACGGCCC . 27.0 13.0 12.0 0.0 . 209 . . Atlas-SNP MCM10 55388 hgsc.bcm.edu hg19 10 13217598 13217598 + Missense_Mutation SNP A A T rs138161730 bycluster;by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MCM10 NM_182751 exon6 c.A684T p.R228S AACTAGAGGTCAA . 136.0 65.0 150.0 0.0 . 76 . A|1.000;G|0.000 Atlas-SNP FAM107B 83641 hgsc.bcm.edu hg19 10 14563994 14563994 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAM107B NM_031453 exon4 c.A678T p.P226P CAATTCTGGTTTG . 59.0 26.0 73.0 0.0 . 43 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 17151661 17151661 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd CUBN,NS,carcinoma,0,1 CUBN NM_001081 exon10 c.T1089A p.D363E TGAGGCATCTGGG . 76.0 27.0 67.0 0.0 . 515 . . Atlas-SNP SLC39A12 221074 hgsc.bcm.edu hg19 10 18250689 18250689 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC39A12 NM_152725 exon3 c.A441C p.L147L CAGCCTACTGAGC . 129.0 60.0 133.0 0.0 . 181 . . Atlas-SNP GPR158 57512 hgsc.bcm.edu hg19 10 25887814 25887814 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPR158 NM_020752 exon11 c.C3259A p.L1087I GAGAAGCTTTTGA . 76.0 30.0 88.0 0.0 . 255 . . Atlas-SNP MYO3A 53904 hgsc.bcm.edu hg19 10 26463109 26463109 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYO3A NM_017433 exon30 c.A3916G p.K1306E GAAAAGAAGACAT . 174.0 85.0 170.0 0.0 . 371 . . Atlas-SNP ZNF33B 7582 hgsc.bcm.edu hg19 10 43089253 43089253 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF33B NM_006955 exon5 c.A1145T p.E382V GGTTTCTCCCCTG . 62.0 36.0 86.0 0.0 . 78 . . Atlas-SNP FXYD4 53828 hgsc.bcm.edu hg19 10 43870979 43870979 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FXYD4 NM_001184963 exon6 c.T130G p.C44G CTGATCTGCGGAG . 83.0 38.0 88.0 0.0 . 9 . . Atlas-SNP RASSF4 83937 hgsc.bcm.edu hg19 10 45484737 45484737 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RASSF4 NM_032023 exon7 c.C547G p.P183A TTTACTCCAGCCT . 52.0 19.0 68.0 0.0 . 33 . . Atlas-SNP ZFAND4 93550 hgsc.bcm.edu hg19 10 46135397 46135397 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001128324 exon6 c.A584G p.Y195C GAATTATACATAG . 51.0 17.0 54.0 0.0 . . . . Atlas-SNP PPYR1 5540 hgsc.bcm.edu hg19 10 47087208 47087208 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PPYR1 NM_005972 exon3 c.T425C p.L142P ATCAGCTCATCAT . 124.0 24.0 107.0 0.0 . 54 . . Atlas-SNP ZNF488 118738 hgsc.bcm.edu hg19 10 48370707 48370707 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF488 NM_153034 exon2 c.G175C p.E59Q GGCCCTGAGGCTG . 24.0 7.0 35.0 0.0 . 38 . . Atlas-SNP GDF2 2658 hgsc.bcm.edu hg19 10 48416370 48416370 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GDF2 NM_016204 exon1 c.T324C p.I108I CCGCACAATGTTG . 48.0 19.0 59.0 0.0 . 77 . . Atlas-SNP ARHGAP22 58504 hgsc.bcm.edu hg19 10 49687696 49687696 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ARHGAP22 NM_001256025 exon4 c.G452T p.W151L GGGGCCCAGATGA . 117.0 56.0 119.0 0.0 . 94 . . Atlas-SNP WDFY4 57705 hgsc.bcm.edu hg19 10 50174650 50174650 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . WDFY4 NM_020945 exon55 c.T8516A p.L2839Q TGAGCCTGCCTGG . 62.0 18.0 95.0 0.0 . 205 . . Atlas-SNP C10orf71 118461 hgsc.bcm.edu hg19 10 50530956 50530956 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C10orf71 NM_001135196 exon3 c.C366T p.V122V GCCAGTCCAGAGG . 127.0 62.0 128.0 0.0 . 179 . . Atlas-SNP C10orf71 118461 hgsc.bcm.edu hg19 10 50532101 50532101 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C10orf71 NM_001135196 exon3 c.A1511T p.K504M ACCTCAAGGACGT . 58.0 32.0 85.0 0.0 . 179 . . Atlas-SNP PGBD3 267004 hgsc.bcm.edu hg19 10 50724703 50724703 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PGBD3 NM_170753 exon2 c.C458T p.P153L ATGACCTCGTCAT . 72.0 34.0 122.0 0.0 . 58 . . Atlas-SNP NCOA4 8031 hgsc.bcm.edu hg19 10 51585413 51585413 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NCOA4 NM_001145261 exon9 c.A1560G p.K520K ATACAAAGAAGGA . 82.0 41.0 70.0 0.0 . 58 . . Atlas-SNP ASAH2 56624 hgsc.bcm.edu hg19 10 52005188 52005188 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ASAH2 NM_019893 exon2 c.A154T p.T52S TTTGGGTGGTTGA . 83.0 35.0 105.0 0.0 . 69 . . Atlas-SNP A1CF 29974 hgsc.bcm.edu hg19 10 52603787 52603787 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . A1CF NM_001198820 exon5 c.A219T p.R73R AAGGTCTCGGGGA . 133.0 55.0 185.0 0.0 . 190 . . Atlas-SNP PRKG1 5592 hgsc.bcm.edu hg19 10 53564432 53564432 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PRKG1 NM_006258 exon4 c.A680G p.Y227C CCGAGTATATGGA . 38.0 20.0 61.0 0.0 . 167 . . Atlas-SNP BICC1 80114 hgsc.bcm.edu hg19 10 60553242 60553242 + Splice_Site SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BICC1 NM_001080512 exon9 c.1048-2A>G . TTTTCTAGGGTTG . 96.0 33.0 92.0 0.0 . 121 . . Atlas-SNP ANK3 288 hgsc.bcm.edu hg19 10 61829458 61829458 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ANK3 NM_020987 exon37 c.T11181G p.S3727S GGATGCAGAAATT . 66.0 24.0 101.0 0.0 . 703 . . Atlas-SNP ARID5B 84159 hgsc.bcm.edu hg19 10 63760062 63760062 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ARID5B NM_032199 exon4 c.A715G p.S239G AACGAGAGTATAT . 71.0 29.0 91.0 0.0 . 125 . . Atlas-SNP ZNF365 22891 hgsc.bcm.edu hg19 10 64415185 64415185 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF365 NM_199452 exon4 c.C185T p.T62I ATCTCACCTTCCA . 133.0 63.0 140.0 0.0 . 174 . . Atlas-SNP ZNF365 22891 hgsc.bcm.edu hg19 10 64425949 64425949 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF365 NM_199451 exon7 c.A1281C p.Q427H ACTCCAAAATTGT . 45.0 13.0 65.0 0.0 . 174 . . Atlas-SNP TET1 80312 hgsc.bcm.edu hg19 10 70332525 70332525 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TET1 NM_030625 exon2 c.A430G p.I144V TATAAGATACTCC . 55.0 41.0 78.0 0.0 . 255 . . Atlas-SNP DDX50 79009 hgsc.bcm.edu hg19 10 70666604 70666604 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DDX50 NM_024045 exon2 c.A225G p.E75E CACTGAAGAAGGA . 212.0 81.0 231.0 0.0 . 65 . . Atlas-SNP DDX50 79009 hgsc.bcm.edu hg19 10 70670895 70670895 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DDX50 NM_024045 exon4 c.A532T p.I178L GATTTAATAGCTC . 190.0 104.0 195.0 1.0 . 65 . . Atlas-SNP SUPV3L1 6832 hgsc.bcm.edu hg19 10 70968759 70968759 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SUPV3L1 NM_003171 exon15 c.A2329T p.R777X GGGACGAGAAGAA . 56.0 20.0 56.0 0.0 . 61 . . Atlas-SNP CDH23 64072 hgsc.bcm.edu hg19 10 73269837 73269837 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CDH23 NM_001171931 exon4 c.146-2A>T . TACTCCAGGTTCT . 41.0 18.0 59.0 0.0 . 365 . . Atlas-SNP NDST2 8509 hgsc.bcm.edu hg19 10 75567441 75567441 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NDST2 NM_003635 exon3 c.A706G p.T236A CATATGTACTATG . 53.0 19.0 91.0 0.0 . 53 . . Atlas-SNP KAT6B 23522 hgsc.bcm.edu hg19 10 76788413 76788413 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_012330 exon18 c.A3831T p.P1277P CCCGCCAGAAACA . 60.0 38.0 51.0 0.0 . . . . Atlas-SNP DLG5 9231 hgsc.bcm.edu hg19 10 79601686 79601686 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DLG5 NM_004747 exon7 c.A1390G p.T464A CAGATGTGCTGCT . 43.0 17.0 54.0 0.0 . 154 . . Atlas-SNP DYDC1 143241 hgsc.bcm.edu hg19 10 82102044 82102044 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DYDC1 NM_001269053 exon4 c.C323G p.A108G TCTTGAGCTCTCT . 67.0 29.0 84.0 0.0 . 15 . . Atlas-SNP LRIT1 26103 hgsc.bcm.edu hg19 10 85991913 85991913 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRIT1 NM_015613 exon4 c.T1642A p.C548S TGCAGCAGACAAG . 95.0 36.0 88.0 0.0 . 73 . . Atlas-SNP CCSER2 54462 hgsc.bcm.edu hg19 10 86259681 86259681 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCSER2 NM_018999 exon10 c.G2376A p.G792G CCAGGGGATCCCA . 56.0 24.0 87.0 0.0 . 7 . . Atlas-SNP SLC16A12 387700 hgsc.bcm.edu hg19 10 91198482 91198482 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC16A12 NM_213606 exon6 c.T907C p.Y303H CCAAGTACACAAA . 60.0 41.0 119.0 0.0 . 40 . . Atlas-SNP KIF20B 9585 hgsc.bcm.edu hg19 10 91469185 91469185 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIF20B NM_016195 exon4 c.A318G p.S106S AAGCTCAGGGCAG . 69.0 53.0 174.0 1.0 . 191 . . Atlas-SNP CEP55 55165 hgsc.bcm.edu hg19 10 95259889 95259889 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CEP55 NM_018131 exon2 c.A81T p.L27F TACATTAGAAAAA . 47.0 38.0 147.0 1.0 . 35 . . Atlas-SNP BLNK 29760 hgsc.bcm.edu hg19 10 97976426 97976426 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BLNK NM_001114094 exon7 c.C590T p.S197L GGAGGTGAACTGC . 68.0 49.0 156.0 0.0 . 46 . . Atlas-SNP TLL2 7093 hgsc.bcm.edu hg19 10 98145897 98145897 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TLL2 NM_012465 exon15 c.A1928C p.N643T TTTTTGTTTGTGG . 31.0 19.0 59.0 0.0 . 122 . . Atlas-SNP CALHM3 119395 hgsc.bcm.edu hg19 10 105236257 105236257 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CALHM3 NM_001129742 exon2 c.T337A p.W113R GGATCCAGACCAG . 56.0 39.0 140.0 0.0 . 46 . . Atlas-SNP TDRD1 56165 hgsc.bcm.edu hg19 10 115947807 115947807 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TDRD1 NM_198795 exon2 c.A217T p.T73S GAGCAAACCAAAC . 97.0 83.0 178.0 1.0 . 126 . . Atlas-SNP DMBT1 1755 hgsc.bcm.edu hg19 10 124402796 124402796 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DMBT1 NM_007329 exon53 c.A7124G p.Y2375C GCTGCTACCGAGG . 72.0 52.0 144.0 0.0 . 677 . . Atlas-SNP PTPRE 5791 hgsc.bcm.edu hg19 10 129869164 129869164 + Silent SNP G G T rs143511195 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PTPRE NM_006504 exon15 c.G1386T p.P462P CATCCCGTGTAAG . 34.0 23.0 68.0 0.0 . 132 . G|1.000;C|0.000 Atlas-SNP TTC40 54777 hgsc.bcm.edu hg19 10 134659626 134659626 + Missense_Mutation SNP A A T rs10870341 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTC40 NM_001200049 exon44 c.T6373A p.C2125S CTTGGCACCGGAG . 25.0 10.0 33.0 0.0 . 100 . A|0.840;G|0.160 Atlas-SNP TTC40 54777 hgsc.bcm.edu hg19 10 134712524 134712524 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTC40 NM_001200049 exon24 c.A3158T p.K1053M TTGGCCTTCTTCC . 74.0 36.0 137.0 0.0 . 100 . . Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 135013094 135013094 + Nonsense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KNDC1 NM_152643 exon15 c.C2891G p.S964X AGGCGTCACCCTC . 30.0 23.0 69.0 0.0 . 155 . . Atlas-SNP ANO9 338440 hgsc.bcm.edu hg19 11 430368 430368 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ANO9 NM_001012302 exon8 c.T575A p.V192D AGCCAGACGAAGT . 97.0 85.0 233.0 1.0 . 61 . . Atlas-SNP PIDD 55367 hgsc.bcm.edu hg19 11 801093 801093 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PIDD NM_145887 exon10 c.A1658T p.H553L AACAGGTGCAGGC . 21.0 14.0 64.0 0.0 . 76 . . Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1083817 1083817 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MUC2 NM_002457 exon18 c.C2349A p.S783R CCTCAGCTGCCAG . 22.0 20.0 72.0 0.0 . 614 . . Atlas-SNP KRTAP5-4 387267 hgsc.bcm.edu hg19 11 1642911 1642911 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRTAP5-4 NM_001012709 exon1 c.A413G p.Q138R CTGCACTGGGAGC . 39.0 31.0 111.0 0.0 . 78 . . Atlas-SNP MRGPRE 116534 hgsc.bcm.edu hg19 11 3249418 3249418 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MRGPRE NM_001039165 exon2 c.G612T p.E204D GCCTCGCTCCACC . 17.0 15.0 42.0 0.0 . 35 . . Atlas-SNP OR51F2 119694 hgsc.bcm.edu hg19 11 4842970 4842970 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR51F2 NM_001004753 exon1 c.C355A p.H119N TTTCTACACGGAT . 55.0 46.0 132.0 0.0 . 72 . . Atlas-SNP OR51S1 119692 hgsc.bcm.edu hg19 11 4870336 4870336 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR51S1 NM_001004758 exon1 c.T103A p.W35R ATGTCCACCAGGA . 67.0 56.0 120.0 0.0 . 83 . . Atlas-SNP OR51A2 401667 hgsc.bcm.edu hg19 11 4976050 4976050 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR51A2 NM_001004748 exon1 c.A894C p.K298N AATCTGTTTAGTT . 156.0 140.0 176.0 0.0 . 40 . . Atlas-SNP OR52N5 390075 hgsc.bcm.edu hg19 11 5799159 5799159 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR52N5 NM_001001922 exon1 c.A706T p.S236C AGAGGCTGATCGC . 62.0 48.0 128.0 0.0 . 58 . . Atlas-SNP DCHS1 8642 hgsc.bcm.edu hg19 11 6644033 6644033 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DCHS1 NM_003737 exon21 c.A8874T p.L2958L AAGTCCTAGGACC . 29.0 25.0 72.0 0.0 . 277 . . Atlas-SNP DCHS1 8642 hgsc.bcm.edu hg19 11 6653396 6653396 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DCHS1 NM_003737 exon6 c.A3347T p.E1116V TGGTTCTCAGCCA . 30.0 29.0 58.0 0.0 . 277 . . Atlas-SNP OR6A2 8590 hgsc.bcm.edu hg19 11 6816315 6816315 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR6A2 NM_003696 exon1 c.A625G p.I209V TAAAAATGGCCAG . 24.0 21.0 45.0 0.0 . 68 . . Atlas-SNP TUB 7275 hgsc.bcm.edu hg19 11 8111646 8111646 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TUB NM_003320 exon4 c.A286T p.K96X AAGAAGAAGCGCC . 82.0 28.0 175.0 0.0 . 71 . . Atlas-SNP IPO7 10527 hgsc.bcm.edu hg19 11 9446500 9446500 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IPO7 NM_006391 exon11 c.A1181T p.Q394L CTGCCCAGACACT . 57.0 49.0 119.0 0.0 . 72 . . Atlas-SNP PLEKHA7 144100 hgsc.bcm.edu hg19 11 16816089 16816089 + Missense_Mutation SNP C C A rs150403598 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PLEKHA7 NM_175058 exon19 c.G2691T p.Q897H CCTCAGCTGGGGT . 31.0 21.0 67.0 0.0 . 120 . C|1.000;G|0.000 Atlas-SNP IGSF22 283284 hgsc.bcm.edu hg19 11 18743196 18743196 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IGSF22 NM_173588 exon4 c.C264T p.A88A CACCCGGGCTCGG . 26.0 22.0 77.0 0.0 . 211 . . Atlas-SNP PTPN5 84867 hgsc.bcm.edu hg19 11 18755139 18755139 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PTPN5 NM_032781 exon10 c.C1044A p.D348E CAGAGGGTCGTCA . 48.0 41.0 99.0 0.0 . 163 . . Atlas-SNP KIAA1549L 25758 hgsc.bcm.edu hg19 11 33564933 33564933 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_012194 exon1 c.A933G p.S311S TGTCTCATCTCCC . 175.0 70.0 185.0 0.0 . . . . Atlas-SNP LDLRAD3 143458 hgsc.bcm.edu hg19 11 36057758 36057758 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LDLRAD3 NM_174902 exon2 c.G152T p.G51V GTGACGGGCTGCC . 44.0 21.0 54.0 0.0 . 52 . . Atlas-SNP RAG1 5896 hgsc.bcm.edu hg19 11 36596843 36596843 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RAG1 NM_000448 exon2 c.A1989C p.A663A GCTGGCAGATGAG . 92.0 38.0 96.0 0.0 . 151 . . Atlas-SNP RAG2 5897 hgsc.bcm.edu hg19 11 36614915 36614915 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RAG2 NM_001243785 exon3 c.T804C p.N268N TTCATCATTGTTA . 48.0 18.0 48.0 0.0 . 92 . . Atlas-SNP ALX4 60529 hgsc.bcm.edu hg19 11 44297157 44297157 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ALX4 NM_021926 exon2 c.T518A p.V173E ATCCCCACAGTGT . 52.0 26.0 45.0 0.0 . 58 . . Atlas-SNP CREB3L1 90993 hgsc.bcm.edu hg19 11 46334468 46334468 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd CREB3L1,NS,carcinoma,0,1 CREB3L1 NM_052854 exon8 c.C1029A p.N343K TGCCAACAGGTGG . 38.0 14.0 39.0 0.0 . 30 . . Atlas-SNP TRIM64C 646754 hgsc.bcm.edu hg19 11 49075580 49075580 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRIM64C NM_001206631 exon6 c.G1039A p.V347M GGGTCACATCCAC . 53.0 19.0 69.0 0.0 . 18 . . Atlas-SNP OR4A15 81328 hgsc.bcm.edu hg19 11 55135489 55135489 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd OR4A15,NS,carcinoma,0,1 OR4A15 NM_001005275 exon1 c.G130A p.G44R CTCTTAGGGCTCA . 68.0 31.0 71.0 0.0 . 161 . . Atlas-SNP OR4A15 81328 hgsc.bcm.edu hg19 11 55135678 55135678 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR4A15 NM_001005275 exon1 c.C319A p.P107T TTTGCTCCCAAAA . 35.0 16.0 43.0 0.0 . 161 . . Atlas-SNP OR4C6 219432 hgsc.bcm.edu hg19 11 55433038 55433038 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR4C6 NM_001004704 exon1 c.C396T p.I132I CACGATCATCATG . 70.0 31.0 65.0 0.0 . 114 . . Atlas-SNP OR8J3 81168 hgsc.bcm.edu hg19 11 55905003 55905003 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR8J3 NM_001004064 exon1 c.A192T p.R64S TAGATGTCTCAGG . 79.0 30.0 110.0 0.0 . 112 . . Atlas-SNP OR8K5 219453 hgsc.bcm.edu hg19 11 55926969 55926969 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR8K5 NM_001004058 exon1 c.T825G p.S275S AAACACAGAAGCC . 95.0 36.0 110.0 0.0 . 82 . . Atlas-SNP OR5J2 282775 hgsc.bcm.edu hg19 11 55944226 55944226 + Missense_Mutation SNP A A G rs201858818 bycluster TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR5J2 NM_001005492 exon1 c.A133G p.M45V CTGGGCATGATCC . 72.0 36.0 74.0 0.0 . 98 . A|0.999;G|0.001 Atlas-SNP OR8K3 219473 hgsc.bcm.edu hg19 11 56086359 56086359 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR8K3 NM_001005202 exon1 c.C577A p.H193N AATACACATGAAA . 75.0 29.0 85.0 0.0 . 92 . . Atlas-SNP OR8K1 390157 hgsc.bcm.edu hg19 11 56114284 56114284 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd OR8K1,face,malignant_melanoma,0,1 OR8K1 NM_001002907 exon1 c.T770C p.F257S TCATGTTCTATGG . 65.0 24.0 107.0 0.0 . 93 . . Atlas-SNP OR8K1 390157 hgsc.bcm.edu hg19 11 56114424 56114424 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR8K1 NM_001002907 exon1 c.A910T p.K304X GAAGTAAAAGATG . 41.0 16.0 51.0 0.0 . 93 . . Atlas-SNP OR5AP2 338675 hgsc.bcm.edu hg19 11 56409824 56409824 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR5AP2 NM_001002925 exon1 c.G92T p.G31V AGGACTCCTTGTA . 52.0 24.0 48.0 0.0 . 69 . . Atlas-SNP OR9G9 504191 hgsc.bcm.edu hg19 11 56468593 56468593 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001013358 exon1 c.C730A p.L244M TCCCACCTGACCT . 92.0 18.0 104.0 0.0 . . . . Atlas-SNP OR9G9 504191 hgsc.bcm.edu hg19 11 56468658 56468658 + Nonsense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001013358 exon1 c.T795G p.Y265X TAGCTATTCTTTT . 72.0 11.0 94.0 0.0 . . . . Atlas-SNP OR5B3 441608 hgsc.bcm.edu hg19 11 58170104 58170104 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR5B3 NM_001005469 exon1 c.C779A p.P260H GAGCTGGGTTGTA . 48.0 20.0 55.0 0.0 . 65 . . Atlas-SNP DDB1 1642 hgsc.bcm.edu hg19 11 61091480 61091480 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DDB1 NM_001923 exon7 c.A892T p.K298X GATCCTTGAGAGT . 170.0 75.0 169.0 0.0 . 100 . . Atlas-SNP CYBASC3 220002 hgsc.bcm.edu hg19 11 61124109 61124109 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CYBASC3 NM_001161454 exon4 c.A128T p.Y43F ATCCAGTAGATAG . 87.0 44.0 89.0 0.0 . 26 . . Atlas-SNP AHNAK 79026 hgsc.bcm.edu hg19 11 62285505 62285505 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AHNAK NM_001620 exon5 c.A16384G p.K5462E TCCCTTTCACTTT . 82.0 41.0 86.0 0.0 . 532 . . Atlas-SNP AHNAK 79026 hgsc.bcm.edu hg19 11 62288328 62288328 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AHNAK NM_001620 exon5 c.A13561G p.M4521V CACTCATGGAGAT . 98.0 29.0 111.0 0.0 . 532 . . Atlas-SNP AHNAK 79026 hgsc.bcm.edu hg19 11 62289734 62289734 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AHNAK NM_001620 exon5 c.A12155G p.H4052R GGGCCATGAACAT . 70.0 34.0 81.0 0.0 . 532 . . Atlas-SNP B3GAT3 26229 hgsc.bcm.edu hg19 11 62384649 62384649 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . B3GAT3 NM_012200 exon3 c.A428T p.Q143L AGCCGCTGGGCTT . 50.0 27.0 57.0 0.0 . 24 . . Atlas-SNP SLC22A8 9376 hgsc.bcm.edu hg19 11 62763203 62763203 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC22A8 NM_001184732 exon7 c.G974A p.R325H GTCATGCGGCGCA . 65.0 28.0 107.0 0.0 . 60 . . Atlas-SNP SLC22A12 116085 hgsc.bcm.edu hg19 11 64359432 64359432 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC22A12 NM_001276326 exon1 c.402+2T>A . CCAAGGTAGGGCC . 21.0 11.0 28.0 0.0 . 68 . . Atlas-SNP SF1 7536 hgsc.bcm.edu hg19 11 64536751 64536751 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SF1 NM_001178030 exon7 c.G1098T p.K366N CTGCATCTTCCGT . 126.0 51.0 131.0 0.0 . 124 . . Atlas-SNP CDC42BPG 55561 hgsc.bcm.edu hg19 11 64601242 64601242 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CDC42BPG NM_017525 exon22 c.A2533T p.R845W CCGGCCTCAGATC . 27.0 11.0 42.0 0.0 . 101 . . Atlas-SNP PPP2R5B 5526 hgsc.bcm.edu hg19 11 64699068 64699068 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PPP2R5B NM_006244 exon10 c.G983C p.C328S AAACCTGCACCCA . 49.0 16.0 59.0 0.0 . 47 . . Atlas-SNP DRAP1 10589 hgsc.bcm.edu hg19 11 65688799 65688799 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DRAP1 NM_006442 exon7 c.513-2A>T . CCCTGCAGCCCCC . 148.0 80.0 168.0 0.0 . 18 . . Atlas-SNP FOLR1 2348 hgsc.bcm.edu hg19 11 71907162 71907162 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FOLR1 NM_016729 exon4 c.T715A p.W239R GGGCCCTGGGCAG . 84.0 39.0 99.0 0.0 . 22 . . Atlas-SNP ATG16L2 89849 hgsc.bcm.edu hg19 11 72538273 72538273 + Silent SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATG16L2 NM_033388 exon14 c.G1407T p.V469V TGACGTGGTGTGT . 68.0 24.0 90.0 0.0 . 26 . . Atlas-SNP ARHGEF17 9828 hgsc.bcm.edu hg19 11 73066691 73066691 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ARHGEF17 NM_014786 exon4 c.A3567G p.L1189L GTTCCTAGAGGTA . 53.0 20.0 57.0 0.0 . 117 . . Atlas-SNP OR2AT4 341152 hgsc.bcm.edu hg19 11 74800166 74800166 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR2AT4 NM_001005285 exon1 c.C593T p.T198I TGGGGGGTGGTGT . 55.0 24.0 58.0 0.0 . 32 . . Atlas-SNP KLHL35 283212 hgsc.bcm.edu hg19 11 75139660 75139660 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KLHL35 NM_001039548 exon2 c.T893C p.L298P TCAGCTAGGTCCA . 31.0 17.0 37.0 0.0 . 15 . . Atlas-SNP MYO7A 4647 hgsc.bcm.edu hg19 11 76903162 76903162 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd MYO7A,NS,carcinoma,0,1 MYO7A NM_000260 exon31 c.A3991T p.K1331X TACGCCAAGGAGC . 110.0 57.0 128.0 0.0 . 164 . . Atlas-SNP TENM4 26011 hgsc.bcm.edu hg19 11 78614413 78614413 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001098816 exon7 c.G649C p.D217H AGTGGTCCGTGGG . 19.0 10.0 39.0 0.0 . . . . Atlas-SNP SYTL2 54843 hgsc.bcm.edu hg19 11 85436399 85436399 + Silent SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SYTL2 NM_206927 exon1 c.C1101A p.P367P ATCCTGGGGAAAA . 53.0 29.0 58.0 0.0 . 231 . . Atlas-SNP CCDC81 60494 hgsc.bcm.edu hg19 11 86103710 86103710 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCDC81 NM_001156474 exon4 c.A426T p.Q142H GAAACAAAATGTG . 106.0 38.0 130.0 0.0 . 89 . . Atlas-SNP CCDC81 60494 hgsc.bcm.edu hg19 11 86108753 86108753 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCDC81 NM_001156474 exon6 c.A726T p.K242N GTTAAAAGACCAG . 40.0 16.0 45.0 0.0 . 89 . . Atlas-SNP CTSC 1075 hgsc.bcm.edu hg19 11 88042455 88042455 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CTSC NM_001814 exon4 c.A517T p.N173Y CAAAGTTGTGATC . 55.0 23.0 73.0 0.0 . 46 . . Atlas-SNP NOX4 50507 hgsc.bcm.edu hg19 11 89069089 89069089 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NOX4 NM_016931 exon17 c.G1540C p.A514P TCAGTGCATGATA . 231.0 99.0 255.0 1.0 . 101 . . Atlas-SNP NAALAD2 10003 hgsc.bcm.edu hg19 11 89907042 89907042 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NAALAD2 NM_005467 exon14 c.G1461T p.W487C AAGCTGGTTGGAA . 103.0 46.0 103.0 0.0 . 113 . . Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92523226 92523226 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAT3 NM_001008781 exon7 c.A4453T p.T1485S GAAGCCACAGATA . 131.0 61.0 138.0 0.0 . 1822 . . Atlas-SNP HEPHL1 341208 hgsc.bcm.edu hg19 11 93806484 93806484 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HEPHL1 NM_001098672 exon8 c.C1383G p.I461M AGTCATCAAGGCA . 70.0 34.0 85.0 0.0 . 144 . . Atlas-SNP FOLR4 390243 hgsc.bcm.edu hg19 11 94040439 94040439 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FOLR4 NM_001199206 exon3 c.T457A p.W153R TCCAACTGGCGTG . 65.0 30.0 97.0 0.0 . 31 . . Atlas-SNP GPR83 10888 hgsc.bcm.edu hg19 11 94113896 94113896 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPR83 NM_016540 exon4 c.C691A p.P231T CAGCTGGCTCAGG . 31.0 12.0 41.0 0.0 . 47 . . Atlas-SNP PIWIL4 143689 hgsc.bcm.edu hg19 11 94354059 94354059 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PIWIL4 NM_152431 exon20 c.A2460T p.P820P TGTCCCAGCACCA . 86.0 40.0 82.0 0.0 . 70 . . Atlas-SNP MMP7 4316 hgsc.bcm.edu hg19 11 102394039 102394039 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MMP7 NM_002423 exon5 c.A707T p.Y236F TTTCCATAGGTTG . 77.0 20.0 95.0 0.0 . 27 . . Atlas-SNP MMP10 4319 hgsc.bcm.edu hg19 11 102642848 102642848 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MMP10 NM_002425 exon10 c.1227-2A>T . CAAATCTAAACCA . 53.0 17.0 55.0 0.0 . 44 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 102984375 102984375 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DYNC2H1 NM_001377 exon2 c.A305T p.E102V TGTTAGAGTCACC . 122.0 56.0 140.0 0.0 . 246 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103018556 103018556 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DYNC2H1 NM_001377 exon19 c.G2758T p.D920Y GTGATTGATGATC . 43.0 21.0 49.0 0.0 . 246 . . Atlas-SNP GRIA4 2893 hgsc.bcm.edu hg19 11 105732861 105732861 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GRIA4 NM_001077244 exon5 c.A599T p.E200V TAGAAGAACTTGA . 90.0 41.0 98.0 0.0 . 380 . . Atlas-SNP GRIA4 2893 hgsc.bcm.edu hg19 11 105769103 105769103 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GRIA4 NM_001077244 exon7 c.T835A p.W279R GATCGCTGGAAGA . 143.0 61.0 153.0 0.0 . 380 . . Atlas-SNP GRIA4 2893 hgsc.bcm.edu hg19 11 105795169 105795169 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GRIA4 NM_001077243 exon12 c.A1521G p.R507R GGTACGAGAGGAG . 64.0 31.0 99.0 0.0 . 380 . . Atlas-SNP GRIA4 2893 hgsc.bcm.edu hg19 11 105795274 105795274 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GRIA4 NM_001077243 exon12 c.T1626A p.P542P GGATCCTCTGGCC . 127.0 63.0 128.0 0.0 . 380 . . Atlas-SNP SLC35F2 54733 hgsc.bcm.edu hg19 11 107673871 107673871 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd SLC35F2,NS,carcinoma,0,2 SLC35F2 NM_017515 exon7 c.C795A p.F265L TGCCACGAACAGC . 191.0 77.0 242.0 0.0 . 29 . . Atlas-SNP ATM 472 hgsc.bcm.edu hg19 11 108175446 108175446 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATM NM_000051 exon37 c.T5541C p.H1847H GATTCATGATATT . 47.0 20.0 70.0 0.0 . 1657 . . Atlas-SNP C11orf65 160140 hgsc.bcm.edu hg19 11 108253873 108253873 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C11orf65 NM_152587 exon9 c.A817C p.I273L TATATATGTTTTT . 64.0 23.0 78.0 0.0 . 29 . . Atlas-SNP CADM1 23705 hgsc.bcm.edu hg19 11 115080321 115080321 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CADM1 NM_014333 exon8 c.A1051G p.T351A TGGTGGTGGTGGT . 56.0 33.0 53.0 0.0 . 74 . . Atlas-SNP SIDT2 51092 hgsc.bcm.edu hg19 11 117054562 117054562 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SIDT2 NM_001040455 exon7 c.G770A p.G257E CCTGCGGGGGCTC . 44.0 21.0 81.0 0.0 . 82 . . Atlas-SNP TMPRSS13 84000 hgsc.bcm.edu hg19 11 117789167 117789167 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMPRSS13 NM_001206790 exon2 c.T408C p.P136P CCTGGCAGGAGAT . 65.0 25.0 59.0 0.0 . 75 . . Atlas-SNP ARHGEF12 23365 hgsc.bcm.edu hg19 11 120349051 120349051 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ARHGEF12 NM_015313 exon37 c.A3719T p.H1240L ATTCACACCTGCC . 60.0 25.0 73.0 0.0 . 133 . . Atlas-SNP OR4D5 219875 hgsc.bcm.edu hg19 11 123811185 123811185 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR4D5 NM_001001965 exon1 c.A862T p.T288S ATCTATACCCTGA . 86.0 45.0 94.0 0.0 . 94 . . Atlas-SNP OR8B8 26493 hgsc.bcm.edu hg19 11 124310403 124310403 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR8B8 NM_012378 exon1 c.T579A p.Y193X ATTCACATAGGTG . 161.0 72.0 179.0 0.0 . 76 . . Atlas-SNP STT3A 3703 hgsc.bcm.edu hg19 11 125489978 125489978 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . STT3A NM_152713 exon17 c.A2036G p.E679G TCCTGGAGGAAGC . 84.0 32.0 98.0 0.0 . 52 . . Atlas-SNP ADAMTS8 11095 hgsc.bcm.edu hg19 11 130278692 130278692 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAMTS8 NM_007037 exon7 c.A1894T p.R632W CGCTCCTCCCCCG . 49.0 20.0 74.0 0.0 . 172 . . Atlas-SNP SNX19 399979 hgsc.bcm.edu hg19 11 130748331 130748331 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SNX19 NM_014758 exon11 c.G2965T p.G989C AGACACCCATCCT . 81.0 40.0 116.0 0.0 . 84 . . Atlas-SNP OPCML 4978 hgsc.bcm.edu hg19 11 133402212 133402212 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OPCML NM_001012393 exon1 c.A8G p.H3R GCAGGATGGTACA . 47.0 19.0 63.0 0.0 . 166 . . Atlas-SNP GLB1L3 112937 hgsc.bcm.edu hg19 11 134177095 134177095 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GLB1L3 NM_001080407 exon10 c.T954C p.D318D TAAAGATGCAAAG . 58.0 22.0 61.0 0.0 . 102 . . Atlas-SNP B4GALNT3 283358 hgsc.bcm.edu hg19 12 660161 660161 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . B4GALNT3 NM_173593 exon11 c.T1071C p.D357D GGTGGATGGGCTT . 65.0 29.0 114.0 0.0 . 64 . . Atlas-SNP B4GALNT3 283358 hgsc.bcm.edu hg19 12 662644 662644 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . B4GALNT3 NM_173593 exon14 c.A1555G p.S519G AAACCCAGCCCTG . 51.0 23.0 78.0 0.0 . 64 . . Atlas-SNP CACNA2D4 93589 hgsc.bcm.edu hg19 12 1987485 1987485 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CACNA2D4 NM_172364 exon16 c.C1715G p.P572R ACCAGGGGCCGGA . 61.0 31.0 82.0 0.0 . 220 . . Atlas-SNP CACNA2D4 93589 hgsc.bcm.edu hg19 12 2027475 2027475 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CACNA2D4 NM_172364 exon1 c.G165T p.W55C CAGCAGCCACAGG . 47.0 20.0 71.0 0.0 . 220 . . Atlas-SNP FKBP4 2288 hgsc.bcm.edu hg19 12 2909266 2909266 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FKBP4 NM_002014 exon7 c.A824G p.E275G TGAAAGAGCGGGG . 50.0 22.0 49.0 0.0 . 29 . . Atlas-SNP KCNA1 3736 hgsc.bcm.edu hg19 12 5021211 5021211 + Missense_Mutation SNP A A C rs146948558 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KCNA1 NM_000217 exon2 c.A667C p.I223L TTCTTCATCGTGG . 77.0 43.0 118.0 0.0 . 112 . A|1.000;G|0.000 Atlas-SNP KCNA5 3741 hgsc.bcm.edu hg19 12 5154056 5154056 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KCNA5 NM_002234 exon1 c.C743T p.S248F CTGGGTCCGCGCG . 38.0 19.0 23.0 0.0 . 138 . . Atlas-SNP VWF 7450 hgsc.bcm.edu hg19 12 6140731 6140731 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . VWF NM_000552 exon21 c.G2699A p.S900N GGGTTACTGCCGC . 78.0 43.0 84.0 0.0 . 338 . . Atlas-SNP VWF 7450 hgsc.bcm.edu hg19 12 6143964 6143964 + Missense_Mutation SNP T T C rs371017187 TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . VWF NM_000552 exon20 c.A2575G p.T859A GGTCTGTGCAGTT . 79.0 40.0 116.0 0.0 . 338 . . Atlas-SNP NANOGNB 360030 hgsc.bcm.edu hg19 12 7923072 7923072 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NANOGNB NM_001145465 exon3 c.A473G p.N158S AATATAATAAAGA . 71.0 33.0 75.0 0.0 . 6 . . Atlas-SNP CLEC2B 9976 hgsc.bcm.edu hg19 12 10005916 10005916 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CLEC2B NM_005127 exon5 c.A433T p.R145W TTTTCCTGCAAAT . 59.0 29.0 51.0 0.0 . 19 . . Atlas-SNP TAS2R7 50837 hgsc.bcm.edu hg19 12 10954328 10954328 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TAS2R7 NM_023919 exon1 c.A842G p.H281R AATGAATGACTTG . 104.0 43.0 133.0 0.0 . 35 . . Atlas-SNP GPRC5A 9052 hgsc.bcm.edu hg19 12 13061653 13061653 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPRC5A NM_003979 exon2 c.T470C p.M157T TGACCATGAATAG . 64.0 34.0 81.0 0.0 . 38 . . Atlas-SNP HEBP1 50865 hgsc.bcm.edu hg19 12 13140219 13140219 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HEBP1 NM_015987 exon3 c.A265T p.N89Y CTTCATTGGGGAA . 126.0 53.0 127.0 0.0 . 16 . . Atlas-SNP ART4 420 hgsc.bcm.edu hg19 12 14993397 14993397 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ART4 NM_021071 exon2 c.A835G p.N279D GACAGTTATATGT . 49.0 21.0 57.0 0.0 . 27 . . Atlas-SNP C2CD5 9847 hgsc.bcm.edu hg19 12 22606848 22606848 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd KIAA0528_ENST00000544930,NS,carcinoma,0,2 . NM_014802 exon24 c.G2853A p.E951E TGGATTCTCCATG . 92.0 40.0 124.0 0.0 . . . . Atlas-SNP KIAA1551 55196 hgsc.bcm.edu hg19 12 32137547 32137547 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_018169 exon4 c.A3658T p.R1220X GGAGAGAGAACTT . 72.0 27.0 83.0 0.0 . . . . Atlas-SNP SYT10 341359 hgsc.bcm.edu hg19 12 33532888 33532888 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SYT10 NM_198992 exon6 c.A1379G p.H460R TCATTGTGTCCTA . 68.0 35.0 93.0 0.0 . 109 . . Atlas-SNP KIF21A 55605 hgsc.bcm.edu hg19 12 39727052 39727052 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd .,2 KIF21A NM_001173464 exon18 c.A2449T p.R817X GGTTTCTTTTTTG . 126.0 41.0 111.0 0.0 . 238 . . Atlas-SNP ABCD2 225 hgsc.bcm.edu hg19 12 40010969 40010969 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ABCD2 NM_005164 exon2 c.T941A p.V314E ATTTCTACCTATA . 71.0 34.0 71.0 0.0 . 127 . . Atlas-SNP NELL2 4753 hgsc.bcm.edu hg19 12 45105173 45105173 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NELL2 NM_001145107 exon12 c.A1241T p.Q414L ATGGTCTGGTCCT . 83.0 23.0 75.0 0.0 . 286 . . Atlas-SNP SLC38A2 54407 hgsc.bcm.edu hg19 12 46760941 46760941 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC38A2 NM_018976 exon6 c.A399G p.L133L TTCATATAATAAA . 150.0 16.0 183.0 0.0 . 36 . . Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49420043 49420043 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MLL2 NM_003482 exon48 c.A15706C p.N5236H GCCCGTTGTTCTC . 94.0 45.0 98.0 0.0 . 1173 . . Atlas-SNP TUBA1C 84790 hgsc.bcm.edu hg19 12 49666554 49666554 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TUBA1C NM_032704 exon4 c.A894T p.P298P TGAGCCAGCCAAC . 190.0 105.0 233.0 0.0 . 32 . . Atlas-SNP FAIM2 23017 hgsc.bcm.edu hg19 12 50294962 50294962 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAIM2 NM_012306 exon2 c.A162T p.P54P GGGGGCTGGGGGG . 33.0 12.0 23.0 0.0 . 32 . . Atlas-SNP ASIC1 41 hgsc.bcm.edu hg19 12 50473727 50473727 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001256830 exon6 c.T1196C p.M399T GTGAAATGCCTTG . 123.0 49.0 155.0 0.0 . . . . Atlas-SNP ASIC1 41 hgsc.bcm.edu hg19 12 50474966 50474966 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001095 exon10 c.1377+2T>A . ACGAGGTAAGCGG . 69.0 33.0 65.0 0.0 . . . . Atlas-SNP TFCP2 7024 hgsc.bcm.edu hg19 12 51492562 51492562 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TFCP2 NM_001173452 exon13 c.T1416C p.D472D TACCTCATCACTG . 55.0 24.0 46.0 0.0 . 49 . . Atlas-SNP SLC4A8 9498 hgsc.bcm.edu hg19 12 51865212 51865212 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC4A8 NM_001039960 exon14 c.A1800G p.L600L CTCCCTAATTTGC . 59.0 23.0 61.0 0.0 . 292 . . Atlas-SNP KRT81 3887 hgsc.bcm.edu hg19 12 52682242 52682242 + Splice_Site SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRT81 NM_002281 exon5 c.640-2A>G . ACATCCTGGAAAG . 84.0 39.0 88.0 0.0 . 46 . . Atlas-SNP KRT6C 286887 hgsc.bcm.edu hg19 12 52862953 52862953 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRT6C NM_173086 exon9 c.A1588T p.S530C CACTGCTGGAACT . 122.0 56.0 133.0 0.0 . 55 . . Atlas-SNP KRT72 140807 hgsc.bcm.edu hg19 12 52979933 52979933 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRT72 NM_001146225 exon9 c.G1369T p.G457W CTGCCCCAGCATT . 51.0 24.0 58.0 0.0 . 70 . . Atlas-SNP KRT73 319101 hgsc.bcm.edu hg19 12 53010081 53010081 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRT73 NM_175068 exon2 c.T531C p.N177N CAGGTTATTCTTG . 88.0 49.0 121.0 0.0 . 101 . . Atlas-SNP KRT77 374454 hgsc.bcm.edu hg19 12 53086355 53086355 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRT77 NM_175078 exon7 c.A1277G p.Q426R AGCTTCTGCCACG . 43.0 21.0 43.0 0.0 . 58 . . Atlas-SNP SOAT2 8435 hgsc.bcm.edu hg19 12 53515148 53515148 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SOAT2 NM_003578 exon12 c.A1199G p.D400G TCCATGACTGGCT . 92.0 34.0 91.0 0.0 . 44 . . Atlas-SNP RARG 5916 hgsc.bcm.edu hg19 12 53605571 53605571 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RARG NM_000966 exon10 c.C1254G p.N418K TTCAGGGTTCTCC . 30.0 12.0 39.0 0.0 . 53 . . Atlas-SNP HOXC10 3226 hgsc.bcm.edu hg19 12 54379618 54379618 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HOXC10 NM_017409 exon1 c.T575A p.L192Q CTCAGCTGGGGGG . 77.0 41.0 128.0 0.0 . 42 . . Atlas-SNP NEUROD4 58158 hgsc.bcm.edu hg19 12 55421151 55421151 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd NEUROD4,colon,carcinoma,0,1 NEUROD4 NM_021191 exon2 c.G928T p.D310Y CCTATAGACATGT . 79.0 37.0 85.0 0.0 . 87 . . Atlas-SNP OR6C3 254786 hgsc.bcm.edu hg19 12 55726148 55726148 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR6C3 NM_054104 exon1 c.A664G p.I222V AGGACCATTTTGA . 75.0 24.0 89.0 0.0 . 36 . . Atlas-SNP NABP2 79035 hgsc.bcm.edu hg19 12 56619992 56619992 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_024068 exon5 c.A320T p.N107I TTCCTAACTTCAG . 116.0 58.0 152.0 0.0 . . . . Atlas-SNP TIMELESS 8914 hgsc.bcm.edu hg19 12 56827889 56827889 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TIMELESS NM_003920 exon2 c.A66G p.G22G AGTGTCTCCCTCC . 96.0 38.0 147.0 0.0 . 107 . . Atlas-SNP TAC3 6866 hgsc.bcm.edu hg19 12 57407370 57407370 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TAC3 NM_013251 exon3 c.C200A p.A67D GTGCTAGCCTGGC . 43.0 19.0 48.0 0.0 . 11 . . Atlas-SNP KIF5A 3798 hgsc.bcm.edu hg19 12 57970570 57970570 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIF5A NM_004984 exon20 c.T2225A p.L742Q TAGAGCTAGAGAA . 61.0 25.0 72.0 0.0 . 143 . . Atlas-SNP DTX3 196403 hgsc.bcm.edu hg19 12 58001020 58001020 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DTX3 NM_178502 exon5 c.T374A p.L125H CCCCTCTCCGAGC . 44.0 21.0 50.0 0.0 . 27 . . Atlas-SNP AGAP2 116986 hgsc.bcm.edu hg19 12 58121778 58121778 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AGAP2 NM_001122772 exon15 c.A2708T p.Q903L ATGGCCTGGACCC . 59.0 26.0 49.0 0.0 . 167 . . Atlas-SNP PPM1H 57460 hgsc.bcm.edu hg19 12 63083571 63083571 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PPM1H NM_020700 exon8 c.A1153G p.T385A CAATAGTTGCCAT . 52.0 22.0 62.0 0.0 . 42 . . Atlas-SNP CAND1 55832 hgsc.bcm.edu hg19 12 67703830 67703830 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CAND1 NM_018448 exon12 c.A3175T p.R1059X AAAGTTAGAAAGG . 112.0 44.0 121.0 0.0 . 100 . . Atlas-SNP YEATS4 8089 hgsc.bcm.edu hg19 12 69759665 69759665 + Splice_Site SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . YEATS4 NM_006530 exon4 c.333+1G>T . AGACCTGTGAGTA . 263.0 99.0 257.0 0.0 . 15 . . Atlas-SNP LRRC10 376132 hgsc.bcm.edu hg19 12 70004105 70004105 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRRC10 NM_201550 exon1 c.A514G p.I172V GCCAGATGGTCCT . 48.0 21.0 44.0 0.0 . 26 . . Atlas-SNP TRHDE 29953 hgsc.bcm.edu hg19 12 73012775 73012775 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRHDE NM_013381 exon13 c.T2291C p.L764P ATCCTCTAGATAA . 254.0 120.0 295.0 0.0 . 194 . . Atlas-SNP CAPS2 84698 hgsc.bcm.edu hg19 12 75716791 75716791 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CAPS2 NM_032606 exon5 c.G311T p.C104F GTTTGACATGGTG . 278.0 95.0 282.0 0.0 . 96 . . Atlas-SNP CAPS2 84698 hgsc.bcm.edu hg19 12 75720286 75720286 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd CAPS2_ENST00000409445,NS,carcinoma,0,1 CAPS2 NM_032606 exon2 c.G50C p.G17A TGAGTTCCTGTGT . 53.0 14.0 69.0 0.0 . 96 . . Atlas-SNP GLIPR1L1 256710 hgsc.bcm.edu hg19 12 75728612 75728612 + Missense_Mutation SNP A A T rs143627655 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GLIPR1L1 NM_152779 exon1 c.A104T p.D35V TTATAGACAACTG . 107.0 48.0 109.0 0.0 . 28 . A|0.999;G|0.001 Atlas-SNP PTPRQ 374462 hgsc.bcm.edu hg19 12 81042674 81042674 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PTPRQ NM_001145026 exon33 c.5400-2A>T . TATTGCAGGTTAC . 231.0 87.0 257.0 0.0 . 119 . . Atlas-SNP MGAT4C 25834 hgsc.bcm.edu hg19 12 86373569 86373569 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MGAT4C NM_013244 exon7 c.T935A p.M312K TAGCCCATGTGCT . 68.0 24.0 81.0 0.0 . 110 . . Atlas-SNP CEP290 80184 hgsc.bcm.edu hg19 12 88513944 88513944 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CEP290 NM_025114 exon15 c.A1469G p.E490G TTCAATTCAAGTT . 274.0 119.0 311.0 0.0 . 195 . . Atlas-SNP LUM 4060 hgsc.bcm.edu hg19 12 91502590 91502590 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LUM NM_002345 exon2 c.T167A p.L56Q AATTTCAGCTCAT . 59.0 24.0 82.0 0.0 . 65 . . Atlas-SNP UBE2N 7334 hgsc.bcm.edu hg19 12 93804888 93804888 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UBE2N NM_003348 exon2 c.C218T p.T73I ATTTTGGTCATGA . 186.0 84.0 195.0 0.0 . 20 . . Atlas-SNP METAP2 10988 hgsc.bcm.edu hg19 12 95905678 95905678 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . METAP2 NM_006838 exon9 c.A972C p.P324P GAAACCAATCCGT . 55.0 17.0 69.0 0.0 . 28 . . Atlas-SNP GAS2L3 283431 hgsc.bcm.edu hg19 12 101018227 101018227 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GAS2L3 NM_174942 exon10 c.A1644C p.P548P AAAGCCAGTCCCA . 95.0 37.0 102.0 0.0 . 76 . . Atlas-SNP SLC5A8 160728 hgsc.bcm.edu hg19 12 101551063 101551063 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC5A8 NM_145913 exon15 c.T1827A p.R609R TCACAAACGAGTC . 73.0 8.0 101.0 0.0 . 102 . . Atlas-SNP UTP20 27340 hgsc.bcm.edu hg19 12 101748808 101748808 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd UTP20,bladder,carcinoma,0,1 UTP20 NM_014503 exon41 c.A5306G p.K1769R AAAACAAGGAAGA . 147.0 9.0 176.0 0.0 . 222 . . Atlas-SNP STAB2 55576 hgsc.bcm.edu hg19 12 104107485 104107485 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . STAB2 NM_017564 exon42 c.C4476A p.T1492T AACCACCCCAGGA . 93.0 36.0 89.0 0.0 . 370 . . Atlas-SNP TCP11L2 255394 hgsc.bcm.edu hg19 12 106734764 106734764 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TCP11L2 NM_152772 exon9 c.T1303A p.W435R CCTATCTGGTCCT . 66.0 39.0 81.0 0.0 . 59 . . Atlas-SNP DAO 1610 hgsc.bcm.edu hg19 12 109286766 109286766 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DAO NM_001917 exon6 c.A461T p.E154V TAACTGAGAGGGG . 53.0 21.0 68.0 0.0 . 58 . . Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112717077 112717077 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001109662 exon9 c.A1210C p.T404P ATCGGGTGGCAGA . 43.0 18.0 65.0 0.0 . . . . Atlas-SNP RASAL1 8437 hgsc.bcm.edu hg19 12 113557018 113557018 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RASAL1 NM_004658 exon8 c.T557A p.L186Q TCCCGCAGCTCCA . 50.0 22.0 63.0 0.0 . 89 . . Atlas-SNP NOS1 4842 hgsc.bcm.edu hg19 12 117680507 117680507 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NOS1 NM_001204218 exon21 c.T3068C p.L1023P TTGGATAGACCTG . 60.0 31.0 76.0 0.0 . 240 . . Atlas-SNP NOS1 4842 hgsc.bcm.edu hg19 12 117703310 117703310 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NOS1 NM_000620 exon12 c.C1947A p.D649E CACTTTGTCACTC . 52.0 26.0 50.0 0.0 . 240 . . Atlas-SNP KSR2 283455 hgsc.bcm.edu hg19 12 118298200 118298200 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KSR2 NM_173598 exon2 c.T130C p.C44R TTTTGCAGGACAG . 34.0 17.0 43.0 0.0 . 208 . . Atlas-SNP SRRM4 84530 hgsc.bcm.edu hg19 12 119588876 119588876 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SRRM4 NM_194286 exon10 c.C1131A p.V377V TTTGGTCCCATCC . 92.0 42.0 86.0 0.0 . 131 . . Atlas-SNP GCN1L1 10985 hgsc.bcm.edu hg19 12 120594786 120594786 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GCN1L1 NM_006836 exon27 c.A3098T p.E1033V AGCAACTCCGGGC . 56.0 18.0 73.0 0.0 . 207 . . Atlas-SNP COX6A1 1337 hgsc.bcm.edu hg19 12 120875944 120875944 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COX6A1 NM_004373 exon1 c.T15C p.G5G AGTTGGTGTGTCC . 37.0 20.0 58.0 0.0 . 5 . . Atlas-SNP PITPNM2 57605 hgsc.bcm.edu hg19 12 123498472 123498472 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PITPNM2 NM_020845 exon3 c.G196T p.G66C GCATGCCCACATG . 72.0 30.0 80.0 0.0 . 105 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124285839 124285839 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DNAH10 NM_207437 exon15 c.G2120A p.G707E CAGCTGGGATACA . 74.0 38.0 76.0 0.0 . 888 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124383215 124383215 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DNAH10 NM_207437 exon55 c.T9140A p.L3047Q AGCGTCTGGATGG . 92.0 44.0 92.0 0.0 . 888 . . Atlas-SNP NCOR2 9612 hgsc.bcm.edu hg19 12 124886995 124886995 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NCOR2 NM_006312 exon16 c.A1595T p.E532V TCCTCCTCCTTCT . 56.0 26.0 70.0 0.0 . 475 . . Atlas-SNP TMEM132D 121256 hgsc.bcm.edu hg19 12 130184613 130184613 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMEM132D NM_133448 exon2 c.G710T p.G237V CAGTCCCCTCTCT . 97.0 39.0 81.0 0.0 . 299 . . Atlas-SNP MPHOSPH8 54737 hgsc.bcm.edu hg19 13 20220900 20220900 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MPHOSPH8 NM_017520 exon3 c.A687T p.K229N AAAGAAAGTTAAA . 152.0 57.0 169.0 0.0 . 58 . . Atlas-SNP EFHA1 221154 hgsc.bcm.edu hg19 13 22113457 22113457 + Missense_Mutation SNP T T A rs371935367 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EFHA1 NM_152726 exon4 c.A450T p.R150S AAGGTCTCTGAAA . 182.0 84.0 197.0 0.0 . 33 . . Atlas-SNP SGCG 6445 hgsc.bcm.edu hg19 13 23898515 23898515 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SGCG NM_000231 exon8 c.T711A p.L237L TGTGCTTGATGCT . 38.0 17.0 48.0 0.0 . 64 . . Atlas-SNP FLT3 2322 hgsc.bcm.edu hg19 13 28601380 28601380 + Splice_Site SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FLT3 NM_004119 exon18 c.2054-2A>G . TGGTCCTGAAATA . 52.0 29.0 67.0 0.0 . 15525 . . Atlas-SNP FRY 10129 hgsc.bcm.edu hg19 13 32812069 32812069 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FRY NM_023037 exon44 c.A6364T p.S2122C CTCTTCAGTCTGC . 55.0 27.0 88.0 0.0 . 312 . . Atlas-SNP FRY 10129 hgsc.bcm.edu hg19 13 32841436 32841436 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FRY NM_023037 exon55 c.G8076C p.M2692I GCTTATGTGTGAC . 36.0 15.0 51.0 0.0 . 312 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 35731383 35731383 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NBEA NM_015678 exon21 c.T2820C p.D940D GGTGGATACCCTC . 61.0 19.0 58.0 0.0 . 340 . . Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39262741 39262741 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FREM2 NM_207361 exon1 c.A1260T p.A420A AGGAGCAGCTTCA . 60.0 28.0 77.0 0.0 . 385 . . Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39357294 39357294 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FREM2 NM_207361 exon5 c.T5729A p.V1910E GAGATGTGAGCCA . 103.0 42.0 104.0 0.0 . 385 . . Atlas-SNP LRCH1 23143 hgsc.bcm.edu hg19 13 47302989 47302989 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRCH1 NM_001164211 exon18 c.A1877G p.E626G GCATTGAGATGAG . 58.0 23.0 81.0 0.0 . 104 . . Atlas-SNP RB1 5925 hgsc.bcm.edu hg19 13 49030437 49030437 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RB1 NM_000321 exon19 c.A1912T p.T638S TTCCAGACCCAGA . 275.0 116.0 279.0 0.0 . 1068 . . Atlas-SNP FNDC3A 22862 hgsc.bcm.edu hg19 13 49781371 49781371 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FNDC3A NM_001079673 exon26 c.A3437T p.Q1146L TCTCTCAGAGGAC . 136.0 126.0 158.0 0.0 . 93 . . Atlas-SNP SUGT1 10910 hgsc.bcm.edu hg19 13 53227239 53227239 + Splice_Site SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SUGT1 NM_001130912 exon2 c.96+1G>A . TTAGAGGTGAGAG . 69.0 23.0 84.0 0.0 . 37 . . Atlas-SNP DIAPH3 81624 hgsc.bcm.edu hg19 13 60490362 60490362 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DIAPH3 NM_001042517 exon19 c.G2192C p.R731P GGCACCCGAAAAG . 66.0 32.0 81.0 0.0 . 139 . . Atlas-SNP KLHL1 57626 hgsc.bcm.edu hg19 13 70535471 70535471 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KLHL1 NM_020866 exon3 c.T786C p.A262A CCAGAGAGCATTG . 77.0 29.0 92.0 0.0 . 164 . . Atlas-SNP IRG1 730249 hgsc.bcm.edu hg19 13 77527812 77527812 + Silent SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IRG1 NM_001258406 exon2 c.G240T p.V80V TTTTGTGAACGGT . 71.0 65.0 68.0 0.0 . 1 . . Atlas-SNP MYCBP2 23077 hgsc.bcm.edu hg19 13 77844588 77844588 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYCBP2 NM_015057 exon6 c.G1031A p.G344D TTAATGCCATTAC . 148.0 62.0 155.0 0.0 . 1029 . . Atlas-SNP SLITRK5 26050 hgsc.bcm.edu hg19 13 88330290 88330290 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLITRK5 NM_015567 exon2 c.A2647C p.S883R CCGTGCAGCCCCG . 132.0 58.0 139.0 0.0 . 192 . . Atlas-SNP ITGBL1 9358 hgsc.bcm.edu hg19 13 102250520 102250520 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ITGBL1 NM_004791 exon7 c.T886G p.C296G TGTAATTGCGGAA . 56.0 50.0 65.0 0.0 . 83 . . Atlas-SNP METTL21C 196541 hgsc.bcm.edu hg19 13 103343193 103343193 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . METTL21C NM_001010977 exon2 c.A252G p.I84M ACTCTCTATGGAT . 125.0 114.0 105.0 0.0 . 23 . . Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103383046 103383046 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001146197 exon4 c.T20001C p.I6667I TGTATCAATGGAA . 60.0 55.0 79.0 0.0 . . . . Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103392604 103392604 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001146197 exon4 c.T10443C p.H3481H AGTTTTATGGTAT . 54.0 29.0 49.0 0.0 . . . . Atlas-SNP GRK1 6011 hgsc.bcm.edu hg19 13 114324036 114324036 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GRK1 NM_002929 exon2 c.T734A p.V245E TGAAAGTACACAG . 55.0 32.0 58.0 0.0 . 41 . . Atlas-SNP OR4K2 390431 hgsc.bcm.edu hg19 14 20344887 20344887 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR4K2 NM_001005501 exon1 c.T461C p.M154T GAGTTATGCATTC . 116.0 22.0 110.0 0.0 . 97 . . Atlas-SNP OR4K15 81127 hgsc.bcm.edu hg19 14 20444394 20444394 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR4K15 NM_001005486 exon1 c.T717C p.V239V CTTGGTTGTCTCC . 86.0 52.0 68.0 0.0 . 82 . . Atlas-SNP OR11G2 390439 hgsc.bcm.edu hg19 14 20666491 20666491 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR11G2 NM_001005503 exon1 c.A997T p.K333X AGGAACAAAGATA . 76.0 25.0 97.0 0.0 . 73 . . Atlas-SNP TEP1 7011 hgsc.bcm.edu hg19 14 20851687 20851687 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TEP1 NM_007110 exon26 c.G3827T p.G1276V AGCTGCCCATTCT . 91.0 47.0 99.0 0.0 . 224 . . Atlas-SNP TEP1 7011 hgsc.bcm.edu hg19 14 20871535 20871535 + Splice_Site SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TEP1 NM_007110 exon8 c.1266+1G>T . GACTCACCTTTCT . 106.0 51.0 121.0 0.0 . 224 . . Atlas-SNP OXA1L 5018 hgsc.bcm.edu hg19 14 23237247 23237247 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OXA1L NM_005015 exon3 c.A486T p.V162V AGATGTAGTCCAA . 80.0 35.0 82.0 0.0 . 49 . . Atlas-SNP MMP14 4323 hgsc.bcm.edu hg19 14 23312529 23312529 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MMP14 NM_004995 exon5 c.G752T p.S251I ATTCCAGTGACCC . 44.0 15.0 53.0 0.0 . 40 . . Atlas-SNP CEBPE 1053 hgsc.bcm.edu hg19 14 23587945 23587945 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CEBPE NM_001805 exon1 c.C356A p.A119E TTCACCGCCACAG . 42.0 18.0 39.0 0.0 . 34 . . Atlas-SNP MYH6 4624 hgsc.bcm.edu hg19 14 23858850 23858850 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYH6 NM_002471 exon27 c.T3811A p.S1271T TGAGGGAGCGTTG . 126.0 55.0 139.0 0.0 . 274 . . Atlas-SNP MYH7 4625 hgsc.bcm.edu hg19 14 23892879 23892879 + Silent SNP C C A rs368728770 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYH7 NM_000257 exon24 c.G2976T p.L992L CTTGGTCAGCTTG . 91.0 39.0 102.0 0.0 . 349 . . Atlas-SNP MYH7 4625 hgsc.bcm.edu hg19 14 23900689 23900689 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYH7 NM_000257 exon9 c.G734T p.G245V AATTTCCCCTGGA . 67.0 27.0 70.0 0.0 . 349 . . Atlas-SNP DCAF11 80344 hgsc.bcm.edu hg19 14 24586232 24586232 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_025230 exon3 c.G262T p.G88W CGTCTTGGGGATC . 147.0 69.0 186.0 0.0 . . . . Atlas-SNP ADCY4 196883 hgsc.bcm.edu hg19 14 24792119 24792119 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADCY4 NM_001198592 exon19 c.T2333A p.L778X GAGTCCAAGGGGC . 68.0 41.0 55.0 0.0 . 86 . . Atlas-SNP NFATC4 4776 hgsc.bcm.edu hg19 14 24841727 24841727 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NFATC4 NM_001198967 exon4 c.G1466T p.R489I AGCCTAGAGCCCA . 56.0 32.0 47.0 0.0 . 115 . . Atlas-SNP NFATC4 4776 hgsc.bcm.edu hg19 14 24843545 24843545 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NFATC4 NM_001198967 exon7 c.C1935A p.A645A CTCAGCCCAGGAG . 44.0 21.0 45.0 0.0 . 115 . . Atlas-SNP NKX2-8 26257 hgsc.bcm.edu hg19 14 37051488 37051488 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NKX2-8 NM_014360 exon1 c.A107T p.Q36L TCGGGCTGGGGGG . 73.0 31.0 102.0 0.0 . 13 . . Atlas-SNP KLHL28 54813 hgsc.bcm.edu hg19 14 45414552 45414552 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KLHL28 NM_017658 exon2 c.A580T p.T194S CTTCGGTAGCTAC . 108.0 49.0 97.0 0.0 . 53 . . Atlas-SNP FANCM 57697 hgsc.bcm.edu hg19 14 45658267 45658267 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FANCM NM_020937 exon20 c.A5042T p.N1681I ATGTAAATGATAA . 106.0 44.0 111.0 0.0 . 225 . . Atlas-SNP POLE2 5427 hgsc.bcm.edu hg19 14 50140842 50140842 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . POLE2 NM_001197331 exon5 c.A416T p.Q139L CTTACCTGGTGCA . 93.0 39.0 89.0 0.0 . 36 . . Atlas-SNP NEMF 9147 hgsc.bcm.edu hg19 14 50318359 50318359 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NEMF NM_004713 exon3 c.A153G p.L51L TTCAAGTAAAAGT . 63.0 26.0 53.0 0.0 . 79 . . Atlas-SNP NID2 22795 hgsc.bcm.edu hg19 14 52481921 52481921 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NID2 NM_007361 exon15 c.C3101G p.P1034R TCCCGGGGGGTGC . 119.0 58.0 127.0 0.0 . 201 . . Atlas-SNP GPR137C 283554 hgsc.bcm.edu hg19 14 53100355 53100355 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPR137C NM_001099652 exon5 c.G975T p.Q325H GGCACAGAGATTA . 69.0 30.0 75.0 0.0 . 24 . . Atlas-SNP DDHD1 80821 hgsc.bcm.edu hg19 14 53521180 53521180 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DDHD1 NM_001160147 exon12 c.A2434T p.S812C CAGAACTGCTATG . 134.0 65.0 218.0 0.0 . 202 . . Atlas-SNP DDHD1 80821 hgsc.bcm.edu hg19 14 53521253 53521253 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DDHD1 NM_001160147 exon12 c.A2361G p.S787S TTCCATTGAGTCT . 178.0 78.0 222.0 0.0 . 202 . . Atlas-SNP C14orf105 55195 hgsc.bcm.edu hg19 14 57960276 57960276 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C14orf105 NM_018168 exon1 c.A158G p.Q53R TTATTCTGGTCCT . 47.0 20.0 43.0 0.0 . 26 . . Atlas-SNP KIAA0586 9786 hgsc.bcm.edu hg19 14 58924599 58924599 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIAA0586 NM_001244189 exon13 c.A1644G p.Q548Q AGTACAAAACAAT . 71.0 33.0 100.0 0.0 . 180 . . Atlas-SNP MTHFD1 4522 hgsc.bcm.edu hg19 14 64886605 64886605 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MTHFD1 NM_005956 exon8 c.G689T p.G230V AACCTGGGGCAAT . 87.0 47.0 106.0 0.0 . 61 . . Atlas-SNP PLEK2 26499 hgsc.bcm.edu hg19 14 67857415 67857415 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PLEK2 NM_016445 exon7 c.G820A p.D274N CTGGATCCTTCCT . 92.0 36.0 115.0 0.0 . 23 . . Atlas-SNP RAD51B 5890 hgsc.bcm.edu hg19 14 68758622 68758622 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RAD51B NM_133509 exon8 c.A778G p.T260A CAGATTACAACCC . 44.0 20.0 47.0 0.0 . 80 . . Atlas-SNP GALNT16 57452 hgsc.bcm.edu hg19 14 69727044 69727044 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GALNT16 NM_001168368 exon1 c.A37T p.T13S ATCCTGACCGTAG . 49.0 26.0 68.0 0.0 . 8 . . Atlas-SNP PLEKHD1 400224 hgsc.bcm.edu hg19 14 69967307 69967307 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PLEKHD1 NM_001161498 exon3 c.T257A p.L86Q TCCCTCTGGGGGG . 31.0 16.0 44.0 0.0 . 24 . . Atlas-SNP SIPA1L1 26037 hgsc.bcm.edu hg19 14 72200517 72200517 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SIPA1L1 NM_015556 exon19 c.A5059G p.K1687E GCTGCCAAAGCCT . 34.0 13.0 31.0 0.0 . 219 . . Atlas-SNP LTBP2 4053 hgsc.bcm.edu hg19 14 75019087 75019087 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LTBP2 NM_000428 exon6 c.A1202T p.Q401L GGGATCTGGCAGA . 23.0 12.0 26.0 0.0 . 158 . . Atlas-SNP MLH3 27030 hgsc.bcm.edu hg19 14 75516322 75516322 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MLH3 NM_014381 exon2 c.T37C p.L13L AACGCAATTTGGC . 64.0 36.0 79.0 0.0 . 200 . . Atlas-SNP FOS 2353 hgsc.bcm.edu hg19 14 75747981 75747981 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FOS NM_005252 exon4 c.A997T p.S333C ACTCCCAGCTGCA . 34.0 16.0 39.0 0.0 . 30 . . Atlas-SNP SAMD15 161394 hgsc.bcm.edu hg19 14 77844096 77844096 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SAMD15 NM_001010860 exon1 c.C335G p.S112C AAACATCCAGAGA . 61.0 24.0 85.0 0.0 . 60 . . Atlas-SNP FLRT2 23768 hgsc.bcm.edu hg19 14 86089087 86089087 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FLRT2 NM_013231 exon2 c.A1229G p.D410G TTCCTGACTGGGA . 189.0 75.0 211.0 0.0 . 168 . . Atlas-SNP GALC 2581 hgsc.bcm.edu hg19 14 88401194 88401194 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GALC NM_000153 exon17 c.A1940T p.D647V GACTTGTCATTCA . 61.0 21.0 70.0 0.0 . 48 . . Atlas-SNP GPR65 8477 hgsc.bcm.edu hg19 14 88478190 88478190 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPR65 NM_003608 exon2 c.A999T p.L333F GGAATTAGAGGTC . 80.0 37.0 92.0 0.0 . 48 . . Atlas-SNP KCNK10 54207 hgsc.bcm.edu hg19 14 88707163 88707163 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KCNK10 NM_138318 exon3 c.A404G p.H135R AGAGCATGCTGCA . 32.0 19.0 25.0 0.0 . 273 . . Atlas-SNP ZC3H14 79882 hgsc.bcm.edu hg19 14 89044335 89044335 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZC3H14 NM_001160104 exon9 c.A1130C p.Q377P TTCCACAGAAACA . 255.0 96.0 331.0 0.0 . 71 . . Atlas-SNP KCNK13 56659 hgsc.bcm.edu hg19 14 90650791 90650791 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KCNK13 NM_022054 exon2 c.A671T p.Y224F GGAGCTACTTTGA . 92.0 39.0 105.0 0.0 . 76 . . Atlas-SNP FAM181A 90050 hgsc.bcm.edu hg19 14 94395161 94395161 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAM181A NM_138344 exon3 c.T716A p.L239Q AGCCCCTGGGACC . 22.0 15.0 42.0 0.0 . 42 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105413692 105413692 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AHNAK2 NM_138420 exon7 c.A8096T p.Q2699L GGGGGCTGAATGC . 120.0 49.0 214.0 0.0 . 719 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105420987 105420987 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AHNAK2 NM_138420 exon7 c.A801G p.I267M GCTCTTTATGGAT . 24.0 19.0 48.0 0.0 . 719 . . Atlas-SNP NPAP1 23742 hgsc.bcm.edu hg19 15 24923872 24923872 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_018958 exon1 c.C2858A p.T953N CATATACTGCATT . 42.0 22.0 54.0 0.0 . . . . Atlas-SNP GABRG3 2567 hgsc.bcm.edu hg19 15 27777744 27777744 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GABRG3 NM_033223 exon10 c.1123-2A>T . GCTTGCAGAACTA . 57.0 29.0 72.0 0.0 . 115 . . Atlas-SNP FAN1 22909 hgsc.bcm.edu hg19 15 31197069 31197069 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAN1 NM_001146095 exon2 c.A203T p.D68V ACAATGACTTCGT . 157.0 63.0 140.0 0.0 . 77 . . Atlas-SNP FMN1 342184 hgsc.bcm.edu hg19 15 33091016 33091016 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FMN1 NM_001103184 exon15 c.A3450G p.I1150M TTTAGATATGTTT . 62.0 27.0 77.0 0.0 . 174 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 33954785 33954785 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RYR3 NM_001243996 exon35 c.A5054T p.E1685V GCCCCGAGATTCC . 74.0 35.0 81.0 0.0 . 760 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 34080457 34080457 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RYR3 NM_001243996 exon67 c.C9628G p.L3210V CCCGACCTGCTGA . 95.0 47.0 99.0 0.0 . 760 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 34105180 34105180 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RYR3 NM_001036 exon73 c.C10374T p.V3458V AGCTGTCTTCCAC . 57.0 36.0 65.0 0.0 . 760 . . Atlas-SNP RASGRP1 10125 hgsc.bcm.edu hg19 15 38804991 38804991 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RASGRP1 NM_001128602 exon7 c.T842C p.V281A TGAGCCACCTGGA . 68.0 27.0 78.0 0.0 . 50 . . Atlas-SNP BUB1B 701 hgsc.bcm.edu hg19 15 40491906 40491906 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BUB1B NM_001211 exon10 c.A1379T p.Q460L CTACTCAGCAAGA . 285.0 122.0 320.0 0.0 . 71 . . Atlas-SNP PLCB2 5330 hgsc.bcm.edu hg19 15 40591344 40591344 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PLCB2 NM_004573 exon8 c.A668T p.E223V AAGATCTCATCTA . 43.0 18.0 71.0 0.0 . 177 . . Atlas-SNP DISP2 85455 hgsc.bcm.edu hg19 15 40660858 40660858 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DISP2 NM_033510 exon8 c.A2545T p.S849C AGCCCCAGCTGCG . 33.0 14.0 28.0 0.0 . 86 . . Atlas-SNP JMJD7-PLA2G4B 8681 hgsc.bcm.edu hg19 15 42134021 42134021 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . JMJD7-PLA2G4B NM_005090 exon13 c.A1188T p.S396S AGCCTCAGAGCAC . 78.0 35.0 77.0 0.0 . 90 . . Atlas-SNP PLA2G4D 283748 hgsc.bcm.edu hg19 15 42364510 42364510 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PLA2G4D NM_178034 exon14 c.T1398C p.N466N TTTGACATTGAGG . 42.0 20.0 51.0 0.0 . 72 . . Atlas-SNP LRRC57 255252 hgsc.bcm.edu hg19 15 42839595 42839595 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRRC57 NM_153260 exon4 c.A356T p.Q119L CCCAGTTGGTTCC . 80.0 42.0 89.0 0.0 . 20 . . Atlas-SNP EPB42 2038 hgsc.bcm.edu hg19 15 43500883 43500883 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EPB42 NM_000119 exon7 c.A1013G p.Y338C TCATTATAGTATT . 139.0 65.0 120.0 0.0 . 53 . . Atlas-SNP TGM7 116179 hgsc.bcm.edu hg19 15 43571862 43571862 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TGM7 NM_052955 exon10 c.T1639G p.W547G GCCTCCAGAAGGG . 37.0 11.0 49.0 0.0 . 86 . . Atlas-SNP WDR76 79968 hgsc.bcm.edu hg19 15 44158449 44158449 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . WDR76 NM_024908 exon13 c.A1740C p.T580T TGAGACAGGAAAG . 141.0 57.0 126.0 0.0 . 34 . . Atlas-SNP SEMA6D 80031 hgsc.bcm.edu hg19 15 48058822 48058822 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SEMA6D NM_020858 exon16 c.A1695G p.G565G TGAAGGATATGAA . 88.0 44.0 105.0 0.0 . 322 . . Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48756135 48756135 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FBN1 NM_000138 exon41 c.C5026A p.P1676T AGTCTGGAGGACA . 57.0 24.0 77.0 0.0 . 310 . . Atlas-SNP FAM227B 196951 hgsc.bcm.edu hg19 15 49867301 49867301 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_152647 exon8 c.A552C p.R184S AAAAACTCTTTCC . 271.0 115.0 329.0 0.0 . . . . Atlas-SNP AP4E1 23431 hgsc.bcm.edu hg19 15 51289653 51289653 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AP4E1 NM_007347 exon18 c.A2477G p.Y826C TGGCATATGAAGA . 88.0 31.0 74.0 0.0 . 78 . . Atlas-SNP FAM214A 56204 hgsc.bcm.edu hg19 15 52879347 52879347 + Splice_Site SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_019600 exon12 c.2877+1G>A . CACATACCACTTG . 63.0 25.0 114.0 0.0 . . . . Atlas-SNP RNF111 54778 hgsc.bcm.edu hg19 15 59373264 59373264 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RNF111 NM_017610 exon8 c.A2078G p.H693R CTTTCCATTCTCA . 199.0 91.0 202.0 0.0 . 179 . . Atlas-SNP VPS13C 54832 hgsc.bcm.edu hg19 15 62223325 62223325 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . VPS13C NM_020821 exon50 c.A6002C p.D2001A AGATCATCAAGGG . 91.0 41.0 96.0 0.0 . 506 . . Atlas-SNP TLN2 83660 hgsc.bcm.edu hg19 15 63102125 63102125 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TLN2 NM_015059 exon49 c.A6665C p.Q2222P TCCAGCAAGCATC . 88.0 46.0 119.0 0.0 . 253 . . Atlas-SNP MEGF11 84465 hgsc.bcm.edu hg19 15 66222097 66222097 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MEGF11 NM_032445 exon12 c.T1533A p.T511T GCCAGGAGTGCAG . 98.0 36.0 105.0 0.0 . 70 . . Atlas-SNP RPL4 6124 hgsc.bcm.edu hg19 15 66795504 66795504 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RPL4 NM_000968 exon4 c.176-2A>T . ATGACCTAAAATT . 115.0 44.0 110.0 0.0 . 29 . . Atlas-SNP ITGA11 22801 hgsc.bcm.edu hg19 15 68624266 68624266 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ITGA11 NM_001004439 exon14 c.G1701A p.E567E GTTGTCCTCCAGG . 104.0 57.0 100.0 0.0 . 110 . . Atlas-SNP ITGA11 22801 hgsc.bcm.edu hg19 15 68624312 68624312 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ITGA11 NM_001004439 exon14 c.T1655A p.L552H TGGTTGAGGTCTC . 127.0 52.0 123.0 0.0 . 110 . . Atlas-SNP CORO2B 10391 hgsc.bcm.edu hg19 15 69006317 69006317 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd CORO2B,NS,carcinoma,0,1 CORO2B NM_006091 exon6 c.G702T p.M234I GAACATGAAGCGG . 61.0 20.0 94.0 0.0 . 68 . . Atlas-SNP GRAMD2 196996 hgsc.bcm.edu hg19 15 72455799 72455799 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GRAMD2 NM_001012642 exon10 c.T764C p.V255A GAAGCTACTTGGG . 85.0 38.0 87.0 0.0 . 31 . . Atlas-SNP HCN4 10021 hgsc.bcm.edu hg19 15 73614832 73614832 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HCN4 NM_005477 exon8 c.C3602A p.S1201Y AGATTGGATGGCA . 143.0 65.0 175.0 0.0 . 150 . . Atlas-SNP CD276 80381 hgsc.bcm.edu hg19 15 73994758 73994758 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CD276 NM_025240 exon3 c.A242G p.E81G TTGCTGAGGGCCA . 58.0 28.0 67.0 0.0 . 29 . . Atlas-SNP SEMA7A 8482 hgsc.bcm.edu hg19 15 74707046 74707046 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SEMA7A NM_003612 exon10 c.A1136T p.Q379L GCCACCTGGAAGG . 61.0 37.0 79.0 0.0 . 58 . . Atlas-SNP CYP1A1 1543 hgsc.bcm.edu hg19 15 75013936 75013936 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CYP1A1 NM_000499 exon3 c.A948G p.G316G ACCAGCTCCAAAG . 62.0 26.0 80.0 0.0 . 60 . . Atlas-SNP LMAN1L 79748 hgsc.bcm.edu hg19 15 75111520 75111520 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LMAN1L NM_021819 exon6 c.A625T p.S209C ACTCCCAGTGATC . 56.0 20.0 69.0 0.0 . 43 . . Atlas-SNP C15orf39 56905 hgsc.bcm.edu hg19 15 75499850 75499850 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C15orf39 NM_015492 exon2 c.A1461T p.P487P TCTTCCACAGAAG . 43.0 18.0 66.0 0.0 . 64 . . Atlas-SNP UBE2Q2 92912 hgsc.bcm.edu hg19 15 76152229 76152229 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UBE2Q2 NM_173469 exon3 c.A293T p.Q98L GTCAGCAATTGAA . 75.0 38.0 100.0 0.0 . 26 . . Atlas-SNP UBE2Q2 92912 hgsc.bcm.edu hg19 15 76183352 76183352 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UBE2Q2 NM_173469 exon11 c.T1026C p.N342N AGCAAATAAGGTA . 82.0 32.0 105.0 0.0 . 26 . . Atlas-SNP SCAPER 49855 hgsc.bcm.edu hg19 15 77021006 77021006 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SCAPER NM_020843 exon16 c.G2095C p.E699Q GGGCTTCTTGTTC . 77.0 32.0 103.0 0.0 . 160 . . Atlas-SNP KIAA1024 23251 hgsc.bcm.edu hg19 15 79749742 79749742 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIAA1024 NM_015206 exon2 c.A1253G p.K418R TGCCAAAGGATCA . 191.0 86.0 216.0 0.0 . 146 . . Atlas-SNP MEX3B 84206 hgsc.bcm.edu hg19 15 82336831 82336831 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MEX3B NM_032246 exon2 c.T380C p.I127T GAGATGATCTCCC . 31.0 14.0 34.0 0.0 . 50 . . Atlas-SNP EFTUD1 79631 hgsc.bcm.edu hg19 15 82444096 82444096 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EFTUD1 NM_024580 exon18 c.G2699A p.S900N AATTTACTTAGGT . 98.0 41.0 84.0 0.0 . 74 . . Atlas-SNP BTBD1 53339 hgsc.bcm.edu hg19 15 83718868 83718868 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BTBD1 NM_025238 exon3 c.A621G p.T207T ATCCATTGTGCTT . 60.0 31.0 79.0 0.0 . 32 . . Atlas-SNP AKAP13 11214 hgsc.bcm.edu hg19 15 86286977 86286977 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AKAP13 NM_006738 exon36 c.C8325A p.T2775T CTCTACCCGCCTG . 101.0 15.0 138.0 0.0 . 394 . . Atlas-SNP AGBL1 123624 hgsc.bcm.edu hg19 15 86702252 86702252 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AGBL1 NM_152336 exon4 c.A345C p.A115A CCAAGCAATCAGG . 81.0 41.0 86.0 0.0 . 151 . . Atlas-SNP AGBL1 123624 hgsc.bcm.edu hg19 15 86823010 86823010 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AGBL1 NM_152336 exon15 c.T2078A p.L693H CAGCCCTCATGGT . 110.0 54.0 106.0 0.0 . 151 . . Atlas-SNP AGBL1 123624 hgsc.bcm.edu hg19 15 87097675 87097675 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AGBL1 NM_152336 exon20 c.C2763A p.S921S AGCTTCCACGGCC . 63.0 30.0 77.0 0.0 . 151 . . Atlas-SNP ACAN 176 hgsc.bcm.edu hg19 15 89388804 89388804 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ACAN NM_001135 exon7 c.A1120G p.T374A GTCCAGACAGTGA . 75.0 36.0 92.0 0.0 . 220 . . Atlas-SNP ABHD2 11057 hgsc.bcm.edu hg19 15 89694906 89694906 + Splice_Site SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ABHD2 NM_152924 exon4 c.195-2A>G . TTCTTTAGATACA . 64.0 32.0 81.0 0.0 . 55 . . Atlas-SNP WDR93 56964 hgsc.bcm.edu hg19 15 90246187 90246187 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . WDR93 NM_020212 exon3 c.A310C p.K104Q CTCAACAAAATGC . 85.0 41.0 101.0 0.0 . 63 . . Atlas-SNP MCTP2 55784 hgsc.bcm.edu hg19 15 94913364 94913364 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MCTP2 NM_001159643 exon11 c.G1537A p.V513M CTACAAGTGAAGG . 106.0 20.0 119.0 0.0 . 122 . . Atlas-SNP IGF1R 3480 hgsc.bcm.edu hg19 15 99478555 99478555 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IGF1R NM_000875 exon17 c.T3197A p.L1066Q GATTGCTGGGTGT . 75.0 35.0 87.0 0.0 . 147 . . Atlas-SNP LRRK1 79705 hgsc.bcm.edu hg19 15 101598240 101598240 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRRK1 NM_024652 exon29 c.T4573A p.F1525I CCGACTTTTGCCA . 55.0 24.0 80.0 0.0 . 310 . . Atlas-SNP LRRK1 79705 hgsc.bcm.edu hg19 15 101605833 101605833 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRRK1 NM_024652 exon32 c.A5191G p.M1731V CCCTACATGGCCC . 55.0 27.0 71.0 0.0 . 310 . . Atlas-SNP TARSL2 123283 hgsc.bcm.edu hg19 15 102252089 102252089 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TARSL2 NM_152334 exon5 c.A806G p.E269G CTGTCTTCAATGA . 67.0 15.0 74.0 0.0 . 63 . . Atlas-SNP RHBDF1 64285 hgsc.bcm.edu hg19 16 114754 114754 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RHBDF1 NM_022450 exon3 c.A191G p.H64R AGCTCATGGTGGG . 44.0 20.0 66.0 0.0 . 54 . . Atlas-SNP PDIA2 64714 hgsc.bcm.edu hg19 16 333349 333349 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PDIA2 NM_006849 exon1 c.T180A p.P60P GCACCCTGCCCTG . 47.0 27.0 67.0 0.0 . 51 . . Atlas-SNP CCDC78 124093 hgsc.bcm.edu hg19 16 774367 774367 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCDC78 NM_001031737 exon9 c.T908A p.L303Q TCCACCAGCCTCT . 41.0 20.0 37.0 0.0 . 26 . . Atlas-SNP CACNA1H 8912 hgsc.bcm.edu hg19 16 1270071 1270071 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CACNA1H NM_021098 exon35 c.A6139G p.R2047G CCGGTGAGGCCGG . 84.0 39.0 109.0 0.0 . 317 . . Atlas-SNP TELO2 9894 hgsc.bcm.edu hg19 16 1551726 1551726 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TELO2 NM_016111 exon11 c.G1424A p.G475D TGGATGGCGGCGT . 20.0 11.0 24.0 0.0 . 44 . . Atlas-SNP TBL3 10607 hgsc.bcm.edu hg19 16 2026270 2026270 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TBL3 NM_006453 exon13 c.A1247T p.Q416L TGGCTCAGGGTTC . 63.0 29.0 87.0 0.0 . 54 . . Atlas-SNP ZNF598 90850 hgsc.bcm.edu hg19 16 2048704 2048704 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF598 NM_178167 exon13 c.A2360T p.Q787L CTGACCTGTCTGA . 64.0 27.0 73.0 0.0 . 55 . . Atlas-SNP E4F1 1877 hgsc.bcm.edu hg19 16 2282755 2282755 + Splice_Site SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . E4F1 NM_004424 exon6 c.731-2A>C . CTCTGCAGATGAG . 36.0 21.0 56.0 0.0 . 53 . . Atlas-SNP ABCA3 21 hgsc.bcm.edu hg19 16 2348543 2348543 + Splice_Site SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ABCA3 NM_001089 exon16 c.1742-2A>G . GAGACCTGGGGCC . 74.0 31.0 62.0 0.0 . 176 . . Atlas-SNP C16orf89 146556 hgsc.bcm.edu hg19 16 5112500 5112500 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C16orf89 NM_001098514 exon2 c.T284A p.L95Q TCCCCCAGCATCC . 60.0 30.0 61.0 0.0 . 64 . . Atlas-SNP CLEC16A 23274 hgsc.bcm.edu hg19 16 11076808 11076808 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CLEC16A NM_015226 exon9 c.A1031T p.E344V TGTCTGAGATGTA . 57.0 25.0 51.0 0.0 . 101 . . Atlas-SNP MKL2 57496 hgsc.bcm.edu hg19 16 14340581 14340581 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MKL2 NM_014048 exon12 c.A1464T p.T488T ACCTACAGGAACC . 68.0 36.0 83.0 0.0 . 103 . . Atlas-SNP XYLT1 64131 hgsc.bcm.edu hg19 16 17353092 17353092 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . XYLT1 NM_022166 exon3 c.A666G p.R222R TGCGGCTCTGTCC . 86.0 40.0 87.0 0.0 . 147 . . Atlas-SNP TMC7 79905 hgsc.bcm.edu hg19 16 19033071 19033071 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMC7 NM_024847 exon4 c.A581G p.Y194C CGAAATACAAGAT . 103.0 37.0 109.0 0.0 . 75 . . Atlas-SNP GPR139 124274 hgsc.bcm.edu hg19 16 20084903 20084903 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPR139 NM_001002911 exon1 c.C36G p.S12R CAGCGAGCTGTTG . 115.0 52.0 126.0 0.0 . 75 . . Atlas-SNP ACSM3 6296 hgsc.bcm.edu hg19 16 20788756 20788756 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ACSM3 NM_005622 exon4 c.A492T p.Q164H ACTACAATCTTCA . 91.0 46.0 107.0 0.0 . 113 . . Atlas-SNP DNAH3 55567 hgsc.bcm.edu hg19 16 21136500 21136500 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DNAH3 NM_017539 exon9 c.A1400C p.H467P ACTTTGTGTATCA . 68.0 35.0 51.0 0.0 . 1142 . . Atlas-SNP ZP2 7783 hgsc.bcm.edu hg19 16 21215496 21215496 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZP2 NM_003460 exon9 c.C827T p.T276I GGTATGGTGAGAG . 42.0 18.0 78.0 0.0 . 92 . . Atlas-SNP POLR3E 55718 hgsc.bcm.edu hg19 16 22316495 22316495 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . POLR3E NM_001258033 exon3 c.A55G p.K19E TTGGCCAAGAGTC . 71.0 29.0 76.0 0.0 . 62 . . Atlas-SNP USP31 57478 hgsc.bcm.edu hg19 16 23080584 23080584 + Missense_Mutation SNP C C A rs34435034 bycluster;byfrequency;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . USP31 NM_020718 exon16 c.G2842T p.V948L TGAACACGCCTTC . 52.0 23.0 79.0 0.0 . 122 . C|0.999;T|0.001 Atlas-SNP CACNG3 10368 hgsc.bcm.edu hg19 16 24373102 24373102 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CACNG3 NM_006539 exon4 c.T866A p.L289Q CTTTTCTACAGTT . 94.0 40.0 96.0 0.0 . 112 . . Atlas-SNP HS3ST4 9951 hgsc.bcm.edu hg19 16 26147136 26147136 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HS3ST4 NM_006040 exon2 c.T938G p.V313G TTGAGGTGCTGGC . 110.0 43.0 97.0 0.0 . 120 . . Atlas-SNP IL4R 3566 hgsc.bcm.edu hg19 16 27374493 27374493 + Nonsense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd IL4R,NS,carcinoma,0,1 IL4R NM_000418 exon11 c.C1820G p.S607X CCTTCTCAAGCCT . 40.0 20.0 34.0 0.0 . 70 . . Atlas-SNP IL21R 50615 hgsc.bcm.edu hg19 16 27448852 27448852 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IL21R NM_181079 exon5 c.A262T p.S88C TCCTGCAGCCTCC . 65.0 31.0 72.0 0.0 . 95 . . Atlas-SNP GTF3C1 2975 hgsc.bcm.edu hg19 16 27509073 27509073 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GTF3C1 NM_001520 exon14 c.A2235G p.P745P TCCACTTGGGCCC . 116.0 53.0 125.0 0.0 . 210 . . Atlas-SNP KIAA0556 23247 hgsc.bcm.edu hg19 16 27760972 27760972 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd KIAA0556_ENST00000261588,colon,carcinoma,0,2 KIAA0556 NM_015202 exon16 c.C2691G p.H897Q ACTTCACGAGTCA . 108.0 54.0 143.0 1.0 . 348 . . Atlas-SNP C16orf54 283897 hgsc.bcm.edu hg19 16 29755668 29755668 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C16orf54 NM_175900 exon2 c.A605T p.Q202L CGTGGCTGGAGGC . 99.0 52.0 93.0 0.0 . 18 . . Atlas-SNP SEZ6L2 26470 hgsc.bcm.edu hg19 16 29906726 29906726 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd SEZ6L2_ENST00000350527,NS,carcinoma,0,2 SEZ6L2 NM_001243332 exon5 c.G707T p.G236V GGGGATCCCCCAC . 74.0 34.0 80.0 0.0 . 137 . . Atlas-SNP FBRS 64319 hgsc.bcm.edu hg19 16 30680873 30680873 + Silent SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FBRS NM_001105079 exon12 c.G1290C p.P430P CCCACCGGGAGCC . 72.0 32.0 64.0 0.0 . 39 . . Atlas-SNP PHKG2 5261 hgsc.bcm.edu hg19 16 30764551 30764551 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PHKG2 NM_001172432 exon5 c.327-2A>T . TCCCTTAGGATGC . 42.0 20.0 57.0 0.0 . 29 . . Atlas-SNP ORAI3 93129 hgsc.bcm.edu hg19 16 30965031 30965031 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ORAI3 NM_152288 exon2 c.A754G p.M252V GCCATCATGGTAC . 47.0 25.0 57.0 0.0 . 19 . . Atlas-SNP PYDC1 260434 hgsc.bcm.edu hg19 16 31228226 31228226 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PYDC1 NM_152901 exon1 c.G124T p.G42C GCGCGCCCCGCGG . 86.0 44.0 97.0 0.0 . 7 . . Atlas-SNP ITGAD 3681 hgsc.bcm.edu hg19 16 31419776 31419776 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ITGAD NM_005353 exon10 c.A1040T p.Q347L CCTTCCAGCACGA . 58.0 32.0 60.0 0.0 . 154 . . Atlas-SNP ARMC5 79798 hgsc.bcm.edu hg19 16 31477974 31477974 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ARMC5 NM_001105247 exon6 c.A2572T p.I858F GGCCGCATCCACC . 47.0 20.0 50.0 0.0 . 94 . . Atlas-SNP PHKB 5257 hgsc.bcm.edu hg19 16 47622970 47622970 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PHKB NM_000293 exon10 c.T1025C p.L342S CATCATTGGAAGA . 26.0 23.0 72.0 0.0 . 298 . . Atlas-SNP PHKB 5257 hgsc.bcm.edu hg19 16 47727355 47727355 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PHKB NM_000293 exon28 c.A2832T p.R944R TGACCGAGTGTGG . 70.0 59.0 148.0 0.0 . 298 . . Atlas-SNP ZNF423 23090 hgsc.bcm.edu hg19 16 49764842 49764842 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF423 NM_015069 exon3 c.C117T p.S39S CGCACGGCTGGTT . 45.0 38.0 101.0 0.0 . 463 . . Atlas-SNP RBL2 5934 hgsc.bcm.edu hg19 16 53498136 53498136 + Splice_Site SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RBL2 NM_005611 exon12 c.1561-2A>G . TTTTATAGGGTAT . 30.0 25.0 50.0 0.0 . 115 . . Atlas-SNP SLC12A3 6559 hgsc.bcm.edu hg19 16 56936357 56936357 + Missense_Mutation SNP C C A rs13306666 bycluster;byhapmap;by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd SLC12A3,caecum,carcinoma,0,1 SLC12A3 NM_000339 exon24 c.C2820A p.N940K TGTCAACGAGATG . 27.0 24.0 89.0 0.0 . 99 . C|0.998;T|0.002 Atlas-SNP CNGB1 1258 hgsc.bcm.edu hg19 16 57935438 57935438 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CNGB1 NM_001297 exon28 c.C2886T p.L962L CTGAAAGAGTGCG . 37.0 32.0 59.0 0.0 . 105 . . Atlas-SNP CCDC113 29070 hgsc.bcm.edu hg19 16 58293762 58293762 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCDC113 NM_014157 exon5 c.A551T p.N184I AGGATAATATGAA . 89.0 81.0 190.0 0.0 . 30 . . Atlas-SNP PRSS54 221191 hgsc.bcm.edu hg19 16 58320072 58320072 + Silent SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PRSS54 NM_001080492 exon5 c.A291C p.I97I GTTACTTATACCC . 49.0 38.0 115.0 0.0 . 48 . . Atlas-SNP CDH5 1003 hgsc.bcm.edu hg19 16 66431975 66431975 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CDH5 NM_001795 exon9 c.A1451T p.Q484L CCTACCAGCCCAA . 51.0 43.0 128.0 0.0 . 111 . . Atlas-SNP CMTM4 146223 hgsc.bcm.edu hg19 16 66670433 66670433 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CMTM4 NM_178818 exon2 c.C238T p.P80S CACACGGGGAGCA . 34.0 29.0 62.0 0.0 . 19 . . Atlas-SNP KCTD19 146212 hgsc.bcm.edu hg19 16 67325322 67325322 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KCTD19 NM_001100915 exon14 c.T2455C p.Y819H GTGCATAAAACAT . 50.0 46.0 136.0 0.0 . 82 . . Atlas-SNP LRRC36 55282 hgsc.bcm.edu hg19 16 67375858 67375858 + Splice_Site SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LRRC36 NM_018296 exon2 c.71-2A>C . CTTTTCAGAACTG . 34.0 30.0 68.0 0.0 . 68 . . Atlas-SNP EDC4 23644 hgsc.bcm.edu hg19 16 67909967 67909967 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EDC4 NM_014329 exon2 c.A202G p.T68A CTTCGGACCATGC . 30.0 25.0 96.0 0.0 . 101 . . Atlas-SNP HYDIN 54768 hgsc.bcm.edu hg19 16 70995883 70995883 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HYDIN NM_001270974 exon38 c.C5947A p.L1983M TTTCCAGGCTTTC . 62.0 34.0 110.0 0.0 . 788 . . Atlas-SNP IST1 9798 hgsc.bcm.edu hg19 16 71957226 71957226 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001270976 exon9 c.G834A p.Q278Q TTATCAGGCCTTT . 63.0 53.0 97.0 0.0 . . . . Atlas-SNP CNTNAP4 85445 hgsc.bcm.edu hg19 16 76523604 76523604 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CNTNAP4 NM_138994 exon12 c.A1685T p.Q562L TCATACAGCACAA . 49.0 40.0 119.0 0.0 . 600 . . Atlas-SNP PKD1L2 114780 hgsc.bcm.edu hg19 16 81248727 81248727 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PKD1L2 NM_001076780 exon3 c.T536A p.V179D TCCTGGACCTGGA . 37.0 29.0 107.0 0.0 . 361 . . Atlas-SNP ADAD2 161931 hgsc.bcm.edu hg19 16 84230327 84230327 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd ADAD2,NS,carcinoma,0,1 ADAD2 NM_139174 exon10 c.T1847C p.V616A GGGCTGTGGGGAA . 26.0 24.0 58.0 0.0 . 46 . . Atlas-SNP CDH15 1013 hgsc.bcm.edu hg19 16 89246648 89246648 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CDH15 NM_004933 exon3 c.G242C p.S81T TCTACAGCATCCA . 37.0 27.0 84.0 0.0 . 54 . . Atlas-SNP ANKRD11 29123 hgsc.bcm.edu hg19 16 89350278 89350278 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ANKRD11 NM_001256183 exon9 c.A2672G p.D891G CGGCTGTCCCGCC . 41.0 38.0 79.0 0.0 . 195 . . Atlas-SNP SCARF1 8578 hgsc.bcm.edu hg19 17 1538573 1538573 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SCARF1 NM_003693 exon11 c.A1972C p.T658P GGCCAGTGGCTGA . 46.0 39.0 71.0 0.0 . 46 . . Atlas-SNP OR1D5 8386 hgsc.bcm.edu hg19 17 2966603 2966603 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR1D5 NM_014566 exon1 c.A299G p.Q100R TAGAGCTGTGTCA . 140.0 91.0 306.0 0.0 . 33 . . Atlas-SNP OR1D2 4991 hgsc.bcm.edu hg19 17 2996103 2996103 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR1D2 NM_002548 exon1 c.T188A p.L63Q TTGGCCAGGAAGA . 110.0 91.0 174.0 0.0 . 39 . . Atlas-SNP OR1A2 26189 hgsc.bcm.edu hg19 17 3100889 3100889 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR1A2 NM_012352 exon1 c.T77A p.V26D ATAATGTCTTCTT . 49.0 36.0 96.0 0.0 . 52 . . Atlas-SNP SLC2A4 6517 hgsc.bcm.edu hg19 17 7189182 7189182 + Silent SNP C C T rs375934415 TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC2A4 NM_001042 exon10 c.C1281T p.N427N CTCCAACTGGACG . 50.0 44.0 111.0 0.0 . 44 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578235 7578235 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd TP53_ENST00000545858,temporoparietal,glioma,0,24 TP53 NM_000546 exon6 c.A614G p.Y205C TCCAAATACTCCA . 73.0 60.0 133.0 0.0 . 33396 . . Atlas-SNP MFSD6L 162387 hgsc.bcm.edu hg19 17 8700730 8700730 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MFSD6L NM_152599 exon1 c.G1709A p.G570E TCTGTCCCCTGCT . 28.0 27.0 45.0 0.0 . 46 . . Atlas-SNP DHRS7C 201140 hgsc.bcm.edu hg19 17 9674809 9674809 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DHRS7C NM_001220493 exon6 c.G935T p.G312V AGTTACCCCTCCT . 27.0 17.0 42.0 0.0 . 34 . . Atlas-SNP GLP2R 9340 hgsc.bcm.edu hg19 17 9774103 9774103 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GLP2R NM_004246 exon10 c.A1096G p.I366V CTTCTCATTTCTA . 48.0 34.0 134.0 0.0 . 90 . . Atlas-SNP MYH1 4619 hgsc.bcm.edu hg19 17 10416941 10416941 + Splice_Site SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYH1 NM_005963 exon10 c.805+2T>A . TTACTCACATGTT . 44.0 39.0 106.0 0.0 . 403 . . Atlas-SNP MYH2 4620 hgsc.bcm.edu hg19 17 10432930 10432930 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYH2 NM_017534 exon24 c.T3068C p.V1023A GTGTTGACTTTGT . 52.0 40.0 128.0 0.0 . 390 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11809030 11809030 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DNAH9 NM_001372 exon61 c.G11653A p.D3885N GCCCTAGATTTTG . 39.0 32.0 84.0 0.0 . 695 . . Atlas-SNP CENPV 201161 hgsc.bcm.edu hg19 17 16253335 16253335 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CENPV NM_181716 exon2 c.A419G p.Q140R AGGCCCTGGTATT . 132.0 111.0 302.0 1.0 . 14 . . Atlas-SNP TRPV2 51393 hgsc.bcm.edu hg19 17 16332223 16332223 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRPV2 NM_016113 exon10 c.T1514A p.L505Q TGGTGCTGGGCTG . 28.0 24.0 47.0 0.0 . 74 . . Atlas-SNP ZNF287 57336 hgsc.bcm.edu hg19 17 16455335 16455335 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF287 NM_020653 exon6 c.T2121A p.N707K ACATTCATTACAT . 217.0 76.0 101.0 0.0 . 60 . . Atlas-SNP MAPK7 5598 hgsc.bcm.edu hg19 17 19286534 19286534 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MAPK7 NM_002749 exon7 c.A2441T p.Q814L ACCTCCAGGACCC . 36.0 17.0 61.0 0.0 . 72 . . Atlas-SNP USP22 23326 hgsc.bcm.edu hg19 17 20919135 20919135 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . USP22 NM_015276 exon6 c.A768T p.A256A GTAGCCTGCTAGG . 41.0 16.0 46.0 0.0 . 45 . . Atlas-SNP KCNJ18 100134444 hgsc.bcm.edu hg19 17 21319679 21319679 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001194958 exon3 c.A1025G p.Y342C TTGACTACTCGCA . 67.0 10.0 90.0 0.0 . . . . Atlas-SNP NLK 51701 hgsc.bcm.edu hg19 17 26499544 26499544 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NLK NM_016231 exon7 c.T1049A p.L350X TGTAGTTGGATTT . 61.0 25.0 73.0 0.0 . 88 . . Atlas-SNP CCL11 6356 hgsc.bcm.edu hg19 17 32612882 32612882 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCL11 NM_002986 exon1 c.C55A p.P19T TTCAGCCCCCAGG . 43.0 21.0 44.0 0.0 . 12 . . Atlas-SNP NLE1 54475 hgsc.bcm.edu hg19 17 33462285 33462285 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NLE1 NM_018096 exon10 c.G1197T p.W399C GCCATCCCACAGC . 90.0 46.0 108.0 0.0 . 42 . . Atlas-SNP UNC45B 146862 hgsc.bcm.edu hg19 17 33495163 33495163 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UNC45B NM_001267052 exon10 c.T1235A p.L412Q TTGACCTGGGCAA . 101.0 44.0 114.0 0.0 . 133 . . Atlas-SNP CCL18 6362 hgsc.bcm.edu hg19 17 34398401 34398401 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCL18 NM_002988 exon3 c.A270T p.X90C TGCCTGAGGGGCC . 130.0 72.0 146.0 0.0 . 9 . . Atlas-SNP GPR179 440435 hgsc.bcm.edu hg19 17 36485679 36485679 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPR179 NM_001004334 exon11 c.G3773T p.S1258I TTGCCACTGTCTG . 44.0 20.0 43.0 0.0 . 170 . . Atlas-SNP PCGF2 7703 hgsc.bcm.edu hg19 17 36891668 36891668 + Silent SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCGF2 NM_007144 exon11 c.C843A p.T281T GGATGGGGTGGCT . 55.0 25.0 50.0 0.0 . 24 . . Atlas-SNP CCR7 1236 hgsc.bcm.edu hg19 17 38721654 38721654 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd CCR7,NS,carcinoma,0,1 CCR7 NM_001838 exon1 c.T8A p.L3Q TCACCCAGGTCCA . 58.0 15.0 71.0 0.0 . 31 . . Atlas-SNP KRT24 192666 hgsc.bcm.edu hg19 17 38855854 38855854 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRT24 NM_019016 exon6 c.A1203G p.S401S AATTTCTGACAGC . 73.0 29.0 68.0 0.0 . 60 . . Atlas-SNP KRT40 125115 hgsc.bcm.edu hg19 17 39137242 39137242 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRT40 NM_182497 exon6 c.G849A p.Q283Q ACTGACCTGAACA . 103.0 48.0 85.0 0.0 . 27 . . Atlas-SNP KRT40 125115 hgsc.bcm.edu hg19 17 39140425 39140425 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRT40 NM_182497 exon3 c.T101A p.L34H CCGGGGAGACAAG . 83.0 36.0 110.0 0.0 . 27 . . Atlas-SNP KRTAP9-9 81870 hgsc.bcm.edu hg19 17 39411764 39411764 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRTAP9-9 NM_030975 exon1 c.T127A p.C43S AGCTGCTGCCAGC . 37.0 18.0 49.0 0.0 . 24 . . Atlas-SNP KRTAP16-1 100505753 hgsc.bcm.edu hg19 17 39464596 39464596 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRTAP16-1 NM_001146182 exon1 c.T910A p.C304S AGACACAACAAGA . 60.0 24.0 68.0 0.0 . 12 . . Atlas-SNP KRTAP16-1 100505753 hgsc.bcm.edu hg19 17 39465344 39465344 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRTAP16-1 NM_001146182 exon1 c.T162G p.C54W TGGCCCACAGCTG . 191.0 84.0 168.0 0.0 . 12 . . Atlas-SNP KRT32 3882 hgsc.bcm.edu hg19 17 39619248 39619248 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRT32 NM_002278 exon6 c.C1051G p.L351V GGGCCAGCTGGGA . 76.0 39.0 71.0 0.0 . 57 . . Atlas-SNP KRT15 3866 hgsc.bcm.edu hg19 17 39673060 39673060 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRT15 NM_002275 exon3 c.G738T p.E246D TCTCACCTCTTCG . 40.0 14.0 45.0 0.0 . 60 . . Atlas-SNP KRT9 3857 hgsc.bcm.edu hg19 17 39728014 39728014 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRT9 NM_000226 exon1 c.T231C p.S77S ACCCCCAGATCCT . 151.0 52.0 162.0 0.0 . 78 . . Atlas-SNP GHDC 84514 hgsc.bcm.edu hg19 17 40345476 40345476 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GHDC NM_001142622 exon3 c.G124T p.G42W GGGCCCCCCATGC . 29.0 12.0 33.0 0.0 . 63 . . Atlas-SNP AOC3 8639 hgsc.bcm.edu hg19 17 41004309 41004309 + Missense_Mutation SNP T T A rs438287 byfrequency;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AOC3 NM_003734 exon1 c.T949A p.Y317N CAGTTCTATCCCC . 55.0 26.0 42.0 0.0 . 88 . T|0.720;C|0.280 Atlas-SNP NBR1 4077 hgsc.bcm.edu hg19 17 41341610 41341610 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NBR1 NM_031862 exon8 c.A486T p.R162S GTTCAGAGAACAA . 99.0 49.0 115.0 0.0 . 55 . . Atlas-SNP NBR1 4077 hgsc.bcm.edu hg19 17 41352594 41352594 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NBR1 NM_031862 exon17 c.G2437C p.E813Q ATCCCAGAGGTAG . 180.0 75.0 207.0 0.0 . 55 . . Atlas-SNP FZD2 2535 hgsc.bcm.edu hg19 17 42635241 42635241 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FZD2 NM_001466 exon1 c.G185T p.G62V TTCTGGGCCACAC . 69.0 36.0 85.0 0.0 . 81 . . Atlas-SNP C17orf104 284071 hgsc.bcm.edu hg19 17 42750732 42750732 + Splice_Site SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C17orf104 NM_001145080 exon7 c.2458-2A>C . TCCCTCAGGTTGT . 63.0 24.0 49.0 0.0 . 75 . . Atlas-SNP HOXB6 3216 hgsc.bcm.edu hg19 17 46675506 46675506 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HOXB6 NM_018952 exon3 c.T7A p.S3T AATAGGAACTCAT . 67.0 31.0 68.0 0.0 . 13 . . Atlas-SNP SPOP 8405 hgsc.bcm.edu hg19 17 47679227 47679227 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPOP NM_001007228 exon9 c.A980G p.Y327C ACTCACTAGTTGA . 76.0 37.0 99.0 0.0 . 91 . . Atlas-SNP SPOP 8405 hgsc.bcm.edu hg19 17 47699405 47699405 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SPOP NM_001007228 exon3 c.A103T p.M35L TCCACATGTAGGA . 120.0 55.0 148.0 0.0 . 91 . . Atlas-SNP MYCBPAP 84073 hgsc.bcm.edu hg19 17 48597032 48597032 + Missense_Mutation SNP T T A rs183786523 by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYCBPAP NM_032133 exon7 c.T929A p.L310Q GTCGACTGGAATA . 82.0 45.0 109.0 0.0 . 135 . T|1.000;C|0.000 Atlas-SNP AKAP1 8165 hgsc.bcm.edu hg19 17 55187406 55187406 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AKAP1 NM_001242902 exon4 c.G1735T p.D579Y AGCATGGATTCCG . 77.0 27.0 77.0 0.0 . 73 . . Atlas-SNP USP32 84669 hgsc.bcm.edu hg19 17 58260585 58260585 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . USP32 NM_032582 exon31 c.A4064T p.D1355V AGCACGTCCTCTT . 130.0 70.0 137.0 0.0 . 128 . . Atlas-SNP BRIP1 83990 hgsc.bcm.edu hg19 17 59793426 59793426 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BRIP1 NM_032043 exon18 c.2380-2A>T . TCAACCTAATAAT . 39.0 16.0 54.0 0.0 . 237 . . Atlas-SNP MRC2 9902 hgsc.bcm.edu hg19 17 60744225 60744225 + Nonsense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MRC2 NM_006039 exon5 c.G967T p.E323X AACTGGGAGAGTG . 79.0 37.0 98.0 0.0 . 126 . . Atlas-SNP BPTF 2186 hgsc.bcm.edu hg19 17 65907751 65907751 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BPTF NM_004459 exon13 c.A4129G p.S1377G TCCAAGAGTGCTT . 122.0 49.0 126.0 0.0 . 415 . . Atlas-SNP RNF157 114804 hgsc.bcm.edu hg19 17 74151646 74151646 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RNF157 NM_052916 exon15 c.A1695G p.G565G TACCTCTCCTTCT . 55.0 17.0 52.0 0.0 . 66 . . Atlas-SNP SEC14L1 6397 hgsc.bcm.edu hg19 17 75196640 75196640 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SEC14L1 NM_001204408 exon11 c.G894T p.M298I GATCATGTGTCAG . 60.0 25.0 92.0 0.0 . 81 . . Atlas-SNP TK1 7083 hgsc.bcm.edu hg19 17 76170929 76170929 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TK1 NM_003258 exon7 c.T616C p.C206R CTGGGCAGTTCTC . 49.0 22.0 65.0 0.0 . 23 . . Atlas-SNP TMEM105 284186 hgsc.bcm.edu hg19 17 79287489 79287489 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMEM105 NM_178520 exon3 c.G352A p.G118R ACAGCCCCTTCAT . 65.0 52.0 138.0 0.0 . 19 . . Atlas-SNP TBCD 6904 hgsc.bcm.edu hg19 17 80887026 80887026 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TBCD NM_005993 exon31 c.A2731T p.S911C CAGGCCAGTGAGA . 18.0 15.0 32.0 0.0 . 94 . . Atlas-SNP EPB41L3 23136 hgsc.bcm.edu hg19 18 5396213 5396213 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EPB41L3 NM_012307 exon19 c.A2960G p.Y987C GATTCATATGTGA . 36.0 31.0 80.0 0.0 . 222 . . Atlas-SNP EPB41L3 23136 hgsc.bcm.edu hg19 18 5416315 5416315 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EPB41L3 NM_012307 exon13 c.A1569G p.T523T GGGAGATGTGGGG . 26.0 19.0 35.0 0.0 . 222 . . Atlas-SNP TUBB6 84617 hgsc.bcm.edu hg19 18 12325366 12325366 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TUBB6 NM_032525 exon4 c.T578A p.V193E AGCTGGTGGAGAA . 45.0 36.0 111.0 0.0 . 35 . . Atlas-SNP ROCK1 6093 hgsc.bcm.edu hg19 18 18559965 18559965 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ROCK1 NM_005406 exon22 c.A2560G p.T854A AAAGTGTCTGCAA . 47.0 20.0 60.0 0.0 . 162 . . Atlas-SNP MIB1 57534 hgsc.bcm.edu hg19 18 19345790 19345790 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MIB1 NM_020774 exon2 c.T287A p.I96N TTGGCATTCGATG . 49.0 32.0 59.0 0.0 . 87 . . Atlas-SNP CABLES1 91768 hgsc.bcm.edu hg19 18 20774494 20774494 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CABLES1 NM_001100619 exon3 c.A1000G p.R334G GATACCAGGAATG . 53.0 29.0 62.0 0.0 . 32 . . Atlas-SNP C18orf8 29919 hgsc.bcm.edu hg19 18 21104400 21104400 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C18orf8 NM_013326 exon12 c.A1014G p.S338S TTCTTCATCTTGG . 55.0 21.0 64.0 0.0 . 58 . . Atlas-SNP ZNF521 25925 hgsc.bcm.edu hg19 18 22669533 22669533 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF521 NM_015461 exon7 c.G3802T p.A1268S TGTTTGCTTGAAC . 102.0 40.0 110.0 0.0 . 269 . . Atlas-SNP ZNF521 25925 hgsc.bcm.edu hg19 18 22806527 22806527 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF521 NM_015461 exon4 c.T1355A p.L452Q TCATTTAGGTTAT . 69.0 41.0 91.0 0.0 . 269 . . Atlas-SNP ZNF521 25925 hgsc.bcm.edu hg19 18 22807425 22807425 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF521 NM_015461 exon4 c.A457T p.R153W ACAGCCTACTGCA . 119.0 62.0 143.0 0.0 . 269 . . Atlas-SNP TAF4B 6875 hgsc.bcm.edu hg19 18 23854702 23854702 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TAF4B NM_005640 exon4 c.T673C p.S225P AAGCCTTCAAGTT . 164.0 71.0 186.0 0.0 . 71 . . Atlas-SNP DSG3 1830 hgsc.bcm.edu hg19 18 29039011 29039011 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DSG3 NM_001944 exon5 c.C388A p.L130I CGGGCTCTAAATG . 165.0 67.0 176.0 0.0 . 172 . . Atlas-SNP CCDC178 374864 hgsc.bcm.edu hg19 18 30672732 30672732 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001105528 exon20 c.A2381T p.K794M TGTTTCTTATCTC . 200.0 104.0 254.0 0.0 . . . . Atlas-SNP DTNA 1837 hgsc.bcm.edu hg19 18 32444004 32444004 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DTNA NM_001390 exon16 c.A1640T p.E547V AGTTGGAGGGTCT . 35.0 19.0 35.0 0.0 . 321 . . Atlas-SNP RIT2 6014 hgsc.bcm.edu hg19 18 40554045 40554045 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RIT2 NM_001272077 exon3 c.T228A p.A76A CTGGCCAGCAGTG . 252.0 134.0 296.0 1.0 . 56 . . Atlas-SNP HAUS1 115106 hgsc.bcm.edu hg19 18 43703286 43703286 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HAUS1 NM_138443 exon6 c.A622G p.M208V AGAGGCATGGATG . 190.0 82.0 258.0 0.0 . 22 . . Atlas-SNP KATNAL2 83473 hgsc.bcm.edu hg19 18 44589401 44589401 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KATNAL2 NM_031303 exon6 c.A392T p.E131V CCAGTGAACTTGC . 56.0 22.0 62.0 0.0 . 64 . . Atlas-SNP ATP8B1 5205 hgsc.bcm.edu hg19 18 55338765 55338765 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATP8B1 NM_005603 exon17 c.A1867C p.T623P TAACAGTGTCAGC . 130.0 54.0 154.0 0.0 . 126 . . Atlas-SNP RAX 30062 hgsc.bcm.edu hg19 18 56936364 56936364 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RAX NM_013435 exon3 c.T913A p.C305S GCCCGCACGGGTA . 42.0 15.0 51.0 0.0 . 19 . . Atlas-SNP CCBE1 147372 hgsc.bcm.edu hg19 18 57122130 57122130 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCBE1 NM_133459 exon6 c.A607T p.K203X ACTCCTTGCATGT . 64.0 27.0 76.0 0.0 . 59 . . Atlas-SNP CDH20 28316 hgsc.bcm.edu hg19 18 59166656 59166656 + Nonsense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CDH20 NM_031891 exon2 c.G484T p.E162X GACAATGAGCCCA . 101.0 54.0 114.0 0.0 . 117 . . Atlas-SNP SERPINB2 5055 hgsc.bcm.edu hg19 18 61562574 61562574 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SERPINB2 NM_002575 exon3 c.T245C p.M82T GGTTCATGCAGCA . 75.0 24.0 69.0 0.0 . 63 . . Atlas-SNP DSEL 92126 hgsc.bcm.edu hg19 18 65180193 65180193 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DSEL NM_032160 exon2 c.T1683C p.F561F ACTCACAAATACC . 109.0 44.0 105.0 0.0 . 196 . . Atlas-SNP CCDC102B 79839 hgsc.bcm.edu hg19 18 66678301 66678301 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCDC102B NM_001093729 exon9 c.T1394C p.V465A TACGAGTGGAAGA . 135.0 50.0 159.0 0.0 . 92 . . Atlas-SNP FAM69C 125704 hgsc.bcm.edu hg19 18 72114218 72114218 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAM69C NM_001044369 exon2 c.A499T p.S167C CCAGGCTGCTGTT . 61.0 32.0 60.0 0.0 . 45 . . Atlas-SNP THEG 51298 hgsc.bcm.edu hg19 19 362299 362299 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . THEG NM_016585 exon8 c.C1041T p.G347G GTTGAGGCCCTTG . 54.0 21.0 96.0 0.0 . 58 . . Atlas-SNP C19orf21 126353 hgsc.bcm.edu hg19 19 758534 758534 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C19orf21 NM_173481 exon2 c.G1588T p.V530L TGGGAGGTGGCTG . 77.0 33.0 86.0 0.0 . 56 . . Atlas-SNP C19orf21 126353 hgsc.bcm.edu hg19 19 758601 758601 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C19orf21 NM_173481 exon2 c.A1655T p.E552V AGAGGGAGAGTGT . 129.0 58.0 153.0 0.0 . 56 . . Atlas-SNP APC2 10297 hgsc.bcm.edu hg19 19 1460853 1460853 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd APC2,NS,malignant_melanoma,0,1 APC2 NM_005883 exon12 c.C1518G p.H506Q GCTCCACCAGGTA . 81.0 11.0 109.0 0.0 . 50 . . Atlas-SNP MAP2K2 5605 hgsc.bcm.edu hg19 19 4117490 4117490 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MAP2K2 NM_030662 exon2 c.A230G p.E77G CCCAGCTCTGAGA . 55.0 16.0 70.0 0.0 . 72 . . Atlas-SNP SIRT6 51548 hgsc.bcm.edu hg19 19 4175099 4175099 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SIRT6 NM_016539 exon7 c.A664T p.S222C TCCCGCTGGGCCG . 35.0 19.0 58.0 0.0 . 16 . . Atlas-SNP ANKRD24 170961 hgsc.bcm.edu hg19 19 4207906 4207906 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ANKRD24 NM_133475 exon10 c.G773A p.G258E TGGCGGGGGACAA . 82.0 38.0 88.0 0.0 . 180 . . Atlas-SNP CCDC94 55702 hgsc.bcm.edu hg19 19 4249223 4249223 + Splice_Site SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CCDC94 NM_018074 exon2 c.25-2A>G . CCCTGCAGAAATA . 72.0 34.0 86.0 0.0 . 28 . . Atlas-SNP STAP2 55620 hgsc.bcm.edu hg19 19 4333984 4333984 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . STAP2 NM_001013841 exon2 c.A160T p.N54Y CCCGATTGCTATT . 68.0 37.0 65.0 0.0 . 38 . . Atlas-SNP ARRDC5 645432 hgsc.bcm.edu hg19 19 4902726 4902726 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ARRDC5 NM_001080523 exon1 c.C154A p.P52T CTATGGGGTCCAC . 120.0 62.0 139.0 0.0 . 19 . . Atlas-SNP ZNRF4 148066 hgsc.bcm.edu hg19 19 5456001 5456001 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNRF4 NM_181710 exon1 c.A499T p.T167S GACTGCACCTTCG . 13.0 9.0 14.0 0.0 . 59 . . Atlas-SNP RANBP3 8498 hgsc.bcm.edu hg19 19 5918611 5918611 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RANBP3 NM_007322 exon15 c.A1369T p.T457S GCTTGGTGTTGAG . 96.0 49.0 118.0 0.0 . 36 . . Atlas-SNP DENND1C 79958 hgsc.bcm.edu hg19 19 6478804 6478804 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DENND1C NM_024898 exon6 c.C356T p.A119V TCCTGGGCTAGGA . 119.0 51.0 179.0 0.0 . 93 . . Atlas-SNP C3 718 hgsc.bcm.edu hg19 19 6710810 6710810 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C3 NM_000064 exon13 c.A1526G p.E509G CCGGGCTCTCGCA . 100.0 44.0 85.0 0.0 . 192 . . Atlas-SNP FBN3 84467 hgsc.bcm.edu hg19 19 8175948 8175948 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FBN3 NM_032447 exon32 c.T4204A p.C1402S CCTGGCAGGCCCG . 50.0 17.0 63.0 0.0 . 300 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9062263 9062263 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MUC16 NM_024690 exon3 c.A25183G p.I8395V TGGATATGGAAAC . 54.0 30.0 52.0 0.0 . 4315 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9067175 9067175 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MUC16 NM_024690 exon3 c.T20271A p.T6757T GGATGTAGTTGGT . 58.0 27.0 84.0 0.0 . 4315 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9067507 9067507 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MUC16 NM_024690 exon3 c.A19939G p.I6647V TCTCAATCCTTGT . 90.0 42.0 96.0 0.0 . 4315 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9069194 9069194 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MUC16 NM_024690 exon3 c.C18252T p.A6084A CACCAGGGCGGTG . 111.0 56.0 111.0 0.0 . 4315 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9071260 9071260 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MUC16 NM_024690 exon3 c.A16186T p.S5396C TGCTGCTCAAATT . 96.0 42.0 100.0 0.0 . 4315 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9077042 9077042 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MUC16 NM_024690 exon3 c.C10404A p.D3468E GCCTTGGTCTCCA . 47.0 27.0 55.0 0.0 . 4315 . . Atlas-SNP OR7G1 125962 hgsc.bcm.edu hg19 19 9226012 9226012 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . OR7G1 NM_001005192 exon1 c.T428A p.L143X ATCAGCAAGCCCC . 89.0 32.0 92.0 0.0 . 53 . . Atlas-SNP S1PR5 53637 hgsc.bcm.edu hg19 19 10624587 10624587 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . S1PR5 NM_030760 exon2 c.G1101A p.S367S CTGGGGCGATGAG . 36.0 18.0 33.0 0.0 . 33 . . Atlas-SNP S1PR5 53637 hgsc.bcm.edu hg19 19 10625481 10625481 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd S1PR5,colon,carcinoma,-2,1 S1PR5 NM_030760 exon2 c.T207C p.A69A CATGGGAGCGTGG . 70.0 17.0 70.0 0.0 . 33 . . Atlas-SNP SMARCA4 6597 hgsc.bcm.edu hg19 19 11101907 11101907 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SMARCA4 NM_003072 exon8 c.A1327C p.K443Q CGCAGCAAGCGCC . 90.0 33.0 94.0 0.0 . 502 . . Atlas-SNP NFIX 4784 hgsc.bcm.edu hg19 19 13136064 13136064 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NFIX NM_001271043 exon2 c.A281T p.E94V GGCCCGAGTTCCG . 61.0 28.0 66.0 0.0 . 61 . . Atlas-SNP CACNA1A 773 hgsc.bcm.edu hg19 19 13411364 13411364 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CACNA1A NM_001127221 exon18 c.T2282A p.V761E ACTTACACAGCTA . 74.0 23.0 87.0 0.0 . 715 . . Atlas-SNP EMR3 84658 hgsc.bcm.edu hg19 19 14749129 14749129 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EMR3 NM_032571 exon11 c.T1272A p.G424G CAAAGCACCGGCG . 55.0 30.0 78.0 0.0 . 99 . . Atlas-SNP EMR3 84658 hgsc.bcm.edu hg19 19 14755018 14755018 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd EMR3,ear,carcinoma,+1,1 EMR3 NM_032571 exon9 c.A952T p.R318W CATCCCTGGACCA . 66.0 30.0 75.0 0.0 . 99 . . Atlas-SNP ZNF333 84449 hgsc.bcm.edu hg19 19 14828536 14828536 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF333 NM_032433 exon11 c.T891C p.D297D CATTGATGTGAAA . 60.0 30.0 73.0 0.0 . 76 . . Atlas-SNP NOTCH3 4854 hgsc.bcm.edu hg19 19 15290991 15290991 + Silent SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NOTCH3 NM_000435 exon20 c.A3219C p.P1073P GCCCTCTGGGCAC . 52.0 25.0 55.0 0.0 . 340 . . Atlas-SNP NOTCH3 4854 hgsc.bcm.edu hg19 19 15299987 15299987 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NOTCH3 NM_000435 exon9 c.1193-2A>T . GGCGCCTGCCGGA . 66.0 25.0 79.0 0.0 . 340 . . Atlas-SNP F2RL3 9002 hgsc.bcm.edu hg19 19 17000522 17000522 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . F2RL3 NM_003950 exon2 c.T248A p.L83H CCGCCCTCTATGG . 25.0 13.0 20.0 0.0 . 20 . . Atlas-SNP IL12RB1 3594 hgsc.bcm.edu hg19 19 18171954 18171954 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IL12RB1 NM_005535 exon15 c.T1769C p.I590T AACTCAATGGCGG . 268.0 122.0 307.0 0.0 . 92 . . Atlas-SNP KIAA1683 80726 hgsc.bcm.edu hg19 19 18377981 18377981 + Silent SNP C C A rs61740692 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIAA1683 NM_001145304 exon3 c.G369T p.L123L GGAAATCAGCTTC . 74.0 33.0 77.0 0.0 . 190 . C|0.984;G|0.016 Atlas-SNP KIAA1683 80726 hgsc.bcm.edu hg19 19 18377982 18377982 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIAA1683 NM_001145304 exon3 c.T368C p.L123P GAAATCAGCTTCT . 72.0 31.0 77.0 0.0 . 190 . . Atlas-SNP TMEM161A 54929 hgsc.bcm.edu hg19 19 19243552 19243552 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMEM161A NM_001256766 exon4 c.G200A p.G67D CTAAGGCCATTGG . 86.0 35.0 98.0 0.0 . 37 . . Atlas-SNP CILP2 148113 hgsc.bcm.edu hg19 19 19651056 19651056 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CILP2 NM_153221 exon3 c.A207T p.G69G CCCCGGAGGCGAC . 30.0 15.0 27.0 0.0 . 84 . . Atlas-SNP CILP2 148113 hgsc.bcm.edu hg19 19 19655120 19655120 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CILP2 NM_153221 exon8 c.G1766T p.G589V CTTCTGGCGCTTT . 56.0 33.0 71.0 0.0 . 84 . . Atlas-SNP PBX4 80714 hgsc.bcm.edu hg19 19 19675781 19675781 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PBX4 NM_025245 exon6 c.C886T p.P296S TCCCTGGGACCCC . 94.0 47.0 107.0 0.0 . 34 . . Atlas-SNP GMIP 51291 hgsc.bcm.edu hg19 19 19749243 19749243 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GMIP NM_016573 exon8 c.A586G p.K196E GCTCCTTGAACTC . 92.0 33.0 113.0 0.0 . 55 . . Atlas-SNP ZNF93 81931 hgsc.bcm.edu hg19 19 20026109 20026109 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF93 NM_031218 exon2 c.T24C p.D8D TAGAGATGTGGCC . 40.0 22.0 35.0 0.0 . 81 . . Atlas-SNP ZNF430 80264 hgsc.bcm.edu hg19 19 21239855 21239855 + Silent SNP C C T rs148853343 TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd ZNF430,abdomen,malignant_melanoma,0,1 ZNF430 NM_025189 exon5 c.C741T p.T247T CTCAACCCTTACT . 182.0 81.0 221.0 0.0 . 59 . . Atlas-SNP ZNF431 170959 hgsc.bcm.edu hg19 19 21365902 21365902 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF431 NM_133473 exon5 c.G796T p.G266C GAATGTGGCAAAG . 78.0 39.0 67.0 0.0 . 71 . . Atlas-SNP ZNF429 353088 hgsc.bcm.edu hg19 19 21719234 21719234 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF429 NM_001001415 exon4 c.A379G p.K127E CTATACAAAGGAG . 113.0 45.0 138.0 0.0 . 338 . . Atlas-SNP ZNF729 100287226 hgsc.bcm.edu hg19 19 22497586 22497586 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF729 NM_001242680 exon4 c.G1367T p.G456V ATACTGGGGAGAA . 42.0 21.0 33.0 0.0 . 78 . . Atlas-SNP ZNF728 388523 hgsc.bcm.edu hg19 19 23158819 23158819 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_001267716 exon4 c.T1320A p.T440T ATGTTTAGTAAGG . 16.0 10.0 16.0 0.0 . . . . Atlas-SNP ZNF681 148213 hgsc.bcm.edu hg19 19 23926975 23926975 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF681 NM_138286 exon4 c.T1377C p.F459F CTGGTTAAAGGCT . 21.0 8.0 38.0 0.0 . 76 . . Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 30935770 30935770 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF536 NM_014717 exon2 c.T1301G p.L434R CCTGCCTGCAGAG . 62.0 21.0 69.0 0.0 . 424 . . Atlas-SNP ZNF507 22847 hgsc.bcm.edu hg19 19 32843894 32843894 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF507 NM_001136156 exon3 c.A158G p.K53R TAAGCAAGATAGT . 78.0 36.0 74.0 0.0 . 92 . . Atlas-SNP RGS9BP 388531 hgsc.bcm.edu hg19 19 33167237 33167237 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RGS9BP NM_207391 exon1 c.T68A p.L23Q ACCACCTGGTGCT . 50.0 22.0 34.0 0.0 . 9 . . Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36221017 36221017 + Silent SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MLL4 NM_014727 exon23 c.G5067C p.L1689L TCTCCTGGATGGC . 113.0 55.0 157.0 0.0 . 229 . . Atlas-SNP ARHGAP33 115703 hgsc.bcm.edu hg19 19 36276186 36276186 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ARHGAP33 NM_052948 exon18 c.A1817T p.K606M CTCGAAAGAAGCC . 92.0 43.0 98.0 0.0 . 102 . . Atlas-SNP ZNF585A 199704 hgsc.bcm.edu hg19 19 37644045 37644045 + Silent SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF585A NM_199126 exon6 c.A591C p.T197T CTTTTGTGTGAAT . 72.0 37.0 71.0 0.0 . 117 . . Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38383818 38383818 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . WDR87 NM_031951 exon4 c.T2408A p.L803Q CACTGTAGGTATA . 61.0 23.0 66.0 0.0 . 191 . . Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38384319 38384319 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . WDR87 NM_031951 exon4 c.T1907C p.L636S AATTTTAAACAGG . 53.0 18.0 50.0 0.0 . 191 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 39076640 39076640 + Nonsense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RYR1 NM_000540 exon103 c.G14866T p.E4956X GATATGGAGGTAG . 56.0 25.0 69.0 0.0 . 708 . . Atlas-SNP FBXO27 126433 hgsc.bcm.edu hg19 19 39517611 39517611 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FBXO27 NM_178820 exon5 c.A607T p.R203X GGAGTCTGTACAT . 85.0 26.0 88.0 0.0 . 26 . . Atlas-SNP TTC9B 148014 hgsc.bcm.edu hg19 19 40724111 40724111 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTC9B NM_152479 exon1 c.A178T p.S60C GGCTGCTGTCGAG . 30.0 17.0 22.0 0.0 . 8 . . Atlas-SNP PRX 57716 hgsc.bcm.edu hg19 19 40903671 40903671 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PRX NM_181882 exon7 c.A588T p.R196R CACTTCTCGTACA . 19.0 10.0 23.0 0.0 . 151 . . Atlas-SNP CEACAM6 4680 hgsc.bcm.edu hg19 19 42265920 42265920 + Nonsense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CEACAM6 NM_002483 exon4 c.C747G p.Y249X CAATTACCGTCCA . 110.0 44.0 130.0 0.0 . 52 . . Atlas-SNP LYPD4 147719 hgsc.bcm.edu hg19 19 42342129 42342129 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LYPD4 NM_173506 exon4 c.T418G p.C140G AGCTACAGGACGC . 97.0 45.0 117.0 0.0 . 30 . . Atlas-SNP POU2F2 5452 hgsc.bcm.edu hg19 19 42621499 42621499 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . POU2F2 NM_002698 exon5 c.G206T p.S69I TCGCCACTGGGGT . 34.0 21.0 26.0 0.0 . 106 . . Atlas-SNP CIC 23152 hgsc.bcm.edu hg19 19 42793207 42793207 + Missense_Mutation SNP G G C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CIC NM_015125 exon7 c.G1099C p.E367Q GGCGGAGAAGTAG . 31.0 18.0 34.0 0.0 . 249 . . Atlas-SNP CXCL17 284340 hgsc.bcm.edu hg19 19 42937971 42937971 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CXCL17 NM_198477 exon2 c.T117C p.S39S TCTCCTAGAAGCC . 31.0 18.0 46.0 0.0 . 8 . . Atlas-SNP PSG6 5675 hgsc.bcm.edu hg19 19 43412004 43412004 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PSG6 NM_001031850 exon4 c.A709G p.K237E GCAGCTTCGCTGT . 40.0 24.0 39.0 0.0 . 89 . . Atlas-SNP ZNF221 7638 hgsc.bcm.edu hg19 19 44470227 44470227 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF221 NM_013359 exon6 c.A573T p.S191S ACAATCACACTCA . 55.0 23.0 86.0 0.0 . 59 . . Atlas-SNP ZNF230 7773 hgsc.bcm.edu hg19 19 44515114 44515114 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF230 NM_006300 exon5 c.A923G p.Y308C AACTGTACAAATC . 55.0 24.0 86.0 0.0 . 44 . . Atlas-SNP ZNF224 7767 hgsc.bcm.edu hg19 19 44610721 44610721 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF224 NM_013398 exon6 c.A408T p.A136A TGAGGCAGGACTA . 77.0 38.0 71.0 0.0 . 70 . . Atlas-SNP ZFP112 7771 hgsc.bcm.edu hg19 19 44832441 44832441 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZFP112 NM_001083335 exon5 c.A1887T p.R629S GTGGACTCTCTGA . 113.0 49.0 146.0 0.0 . 219 . . Atlas-SNP ZFP112 7771 hgsc.bcm.edu hg19 19 44833042 44833042 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZFP112 NM_001083335 exon5 c.A1286C p.N429T TCAAGATTTGAAC . 82.0 26.0 76.0 0.0 . 219 . . Atlas-SNP RSPH6A 81492 hgsc.bcm.edu hg19 19 46318016 46318016 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RSPH6A NM_030785 exon1 c.A419T p.E140V GGGGGCTCCTGGA . 52.0 23.0 74.0 0.0 . 70 . . Atlas-SNP ARHGAP35 2909 hgsc.bcm.edu hg19 19 47425269 47425269 + Nonsense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_004491 exon1 c.C3337T p.Q1113X AGCACCCAAGGCA . 101.0 43.0 154.0 0.0 . . . . Atlas-SNP KPTN 11133 hgsc.bcm.edu hg19 19 47986778 47986778 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KPTN NM_007059 exon2 c.T290A p.V97E ATCCCCACAACCA . 80.0 27.0 110.0 0.0 . 34 . . Atlas-SNP ELSPBP1 64100 hgsc.bcm.edu hg19 19 48519284 48519284 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ELSPBP1 NM_022142 exon4 c.T343G p.C115G AAATTCTGTGAAA . 57.0 19.0 82.0 0.0 . 29 . . Atlas-SNP PLA2G4C 8605 hgsc.bcm.edu hg19 19 48551611 48551611 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PLA2G4C NM_001159322 exon17 c.T1645G p.C549G CCAAGCAGCAACT . 40.0 24.0 44.0 0.0 . 76 . . Atlas-SNP FGF21 26291 hgsc.bcm.edu hg19 19 49261303 49261303 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FGF21 NM_019113 exon3 c.A456T p.P152P GTCCCCACACCGG . 164.0 59.0 188.0 0.0 . 21 . . Atlas-SNP GYS1 2997 hgsc.bcm.edu hg19 19 49473817 49473817 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GYS1 NM_002103 exon14 c.A1795G p.K599E GGTATTTCCAGTC . 51.0 27.0 59.0 0.0 . 59 . . Atlas-SNP TRPM4 54795 hgsc.bcm.edu hg19 19 49703938 49703938 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRPM4 NM_017636 exon19 c.G2849T p.G950V CGGAGGGGCTCCT . 41.0 17.0 45.0 0.0 . 119 . . Atlas-SNP SCAF1 58506 hgsc.bcm.edu hg19 19 50154181 50154181 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SCAF1 NM_021228 exon7 c.A535C p.T179P TTGGGCACGGGAG . 65.0 20.0 76.0 0.0 . 78 . . Atlas-SNP SIGLEC11 114132 hgsc.bcm.edu hg19 19 50453266 50453266 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SIGLEC11 NM_052884 exon11 c.T2058A p.L686L CAATTGAAGCCCA . 71.0 27.0 99.0 0.0 . 70 . . Atlas-SNP NAPSA 9476 hgsc.bcm.edu hg19 19 50861904 50861904 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NAPSA NM_004851 exon9 c.T1169G p.M390R CTCTTCATGTCCC . 68.0 30.0 108.0 0.0 . 38 . . Atlas-SNP SHANK1 50944 hgsc.bcm.edu hg19 19 51189492 51189492 + Splice_Site SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SHANK1 NM_016148 exon21 c.2577+2T>C . CCGCCTACCTCAG . 19.0 9.0 45.0 0.0 . 210 . . Atlas-SNP SIGLECL1 284369 hgsc.bcm.edu hg19 19 51768725 51768725 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_173635 exon3 c.A126T p.G42G GATGGGAGGAGTC . 87.0 34.0 116.0 0.0 . . . . Atlas-SNP IGLON5 402665 hgsc.bcm.edu hg19 19 51828607 51828607 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IGLON5 NM_001101372 exon4 c.C399A p.A133A CCCTGCCCGCATT . 46.0 21.0 61.0 0.0 . 31 . . Atlas-SNP SIGLEC8 27181 hgsc.bcm.edu hg19 19 51958812 51958812 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SIGLEC8 NM_014442 exon4 c.C911T p.P304L CGTGAGGGGCACA . 46.0 26.0 73.0 0.0 . 130 . . Atlas-SNP SIGLEC12 89858 hgsc.bcm.edu hg19 19 52003208 52003208 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SIGLEC12 NM_053003 exon2 c.C774A p.N258K TATGTAGTTCCAT . 60.0 29.0 85.0 0.0 . 243 . . Atlas-SNP SIGLEC12 89858 hgsc.bcm.edu hg19 19 52004872 52004872 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SIGLEC12 NM_053003 exon1 c.G116T p.C39F GAGACACACAGGC . 50.0 22.0 88.0 0.0 . 243 . . Atlas-SNP SIGLEC6 946 hgsc.bcm.edu hg19 19 52023460 52023460 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SIGLEC6 NM_198846 exon6 c.A1062T p.X354C CCAGCCTCAGCAG . 49.0 17.0 73.0 0.0 . 142 . . Atlas-SNP FPR1 2357 hgsc.bcm.edu hg19 19 52249744 52249744 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FPR1 NM_001193306 exon3 c.T504A p.P168P TTTACCAGGTACT . 48.0 24.0 54.0 0.0 . 64 . . Atlas-SNP ZNF347 84671 hgsc.bcm.edu hg19 19 53644359 53644359 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF347 NM_001172675 exon5 c.T1725C p.C575C CTTGCCACACTCA . 37.0 17.0 66.0 0.0 . 87 . . Atlas-SNP ZNF677 342926 hgsc.bcm.edu hg19 19 53741010 53741010 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF677 NM_182609 exon5 c.T970G p.C324G TGCCACATATATT . 72.0 40.0 99.0 0.0 . 94 . . Atlas-SNP BIRC8 112401 hgsc.bcm.edu hg19 19 53793261 53793261 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BIRC8 NM_033341 exon1 c.T367A p.F123I AATCAAATCCCAT . 93.0 39.0 118.0 0.0 . 54 . . Atlas-SNP DPRX 503834 hgsc.bcm.edu hg19 19 54139945 54139945 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd DPRX,NS,carcinoma,0,1 DPRX NM_001012728 exon3 c.T279A p.G93G AGAGGGTGGGGTC . 65.0 25.0 98.0 0.0 . 34 . . Atlas-SNP PRKCG 5582 hgsc.bcm.edu hg19 19 54401219 54401219 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PRKCG NM_002739 exon10 c.C946A p.R316R CGGGTGCGGATGG . 38.0 22.0 57.0 0.0 . 246 . . Atlas-SNP CACNG7 59284 hgsc.bcm.edu hg19 19 54444786 54444786 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CACNG7 NM_031896 exon4 c.A487C p.R163R ATGAACAGGCCCA . 55.0 30.0 67.0 0.0 . 58 . . Atlas-SNP NLRP2 55655 hgsc.bcm.edu hg19 19 55497556 55497556 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NLRP2 NM_017852 exon8 c.C2239A p.L747I CGGAACCTCTGCC . 91.0 38.0 97.0 0.0 . 161 . . Atlas-SNP NLRP2 55655 hgsc.bcm.edu hg19 19 55505725 55505725 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NLRP2 NM_017852 exon11 c.G2797T p.G933W GATCTGGGGCTGA . 95.0 52.0 107.0 0.0 . 161 . . Atlas-SNP NLRP2 55655 hgsc.bcm.edu hg19 19 55505788 55505788 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NLRP2 NM_017852 exon11 c.T2860C p.C954R CCACTGTGCAACT . 87.0 44.0 84.0 0.0 . 161 . . Atlas-SNP GP6 51206 hgsc.bcm.edu hg19 19 55538983 55538983 + Missense_Mutation SNP C C A rs41301959 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GP6 NM_016363 exon4 c.G573T p.W191C GGCTGACCACAGG . 56.0 34.0 78.0 0.0 . 55 . . Atlas-SNP RDH13 112724 hgsc.bcm.edu hg19 19 55556516 55556516 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RDH13 NM_001145971 exon7 c.A922G p.R308G AAAGCCTCCGGGC . 80.0 21.0 119.0 0.0 . 43 . . Atlas-SNP SYT5 6861 hgsc.bcm.edu hg19 19 55689571 55689571 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SYT5 NM_003180 exon3 c.T245C p.I82T TTGTCTATGTAAC . 21.0 13.0 37.0 0.0 . 45 . . Atlas-SNP ZNF471 57573 hgsc.bcm.edu hg19 19 57036782 57036782 + Missense_Mutation SNP A A C rs372005205 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF471 NM_020813 exon5 c.A1346C p.H449P CTCAGCATCAAAG . 38.0 32.0 91.0 0.0 . 99 . . Atlas-SNP ZNF71 58491 hgsc.bcm.edu hg19 19 57132817 57132817 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF71 NM_021216 exon3 c.A162T p.A54A AGGTGCAGAGTGG . 42.0 37.0 125.0 0.0 . 69 . . Atlas-SNP ZNF460 10794 hgsc.bcm.edu hg19 19 57803168 57803168 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF460 NM_006635 exon3 c.A1259G p.Y420C AGCCCTATGAGTG . 54.0 51.0 91.0 0.0 . 59 . . Atlas-SNP ZNF549 256051 hgsc.bcm.edu hg19 19 58048776 58048776 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZNF549 NM_001199295 exon4 c.T404G p.V135G CGTCTGTGGCCAG . 93.0 68.0 159.0 0.0 . 118 . . Atlas-SNP ZSCAN18 65982 hgsc.bcm.edu hg19 19 58598367 58598367 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZSCAN18 NM_001145542 exon5 c.G819C p.K273N AAAGGACTTCAGC . 17.0 16.0 27.0 0.0 . 104 . . Atlas-SNP ZSCAN18 65982 hgsc.bcm.edu hg19 19 58601546 58601546 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ZSCAN18 NM_001145542 exon2 c.A257T p.Q86L TCCTGCTGGACTC . 81.0 62.0 215.0 1.0 . 104 . . Atlas-SNP SLC52A3 113278 hgsc.bcm.edu hg19 20 744623 744623 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_033409 exon3 c.G592T p.A198S GGAGGGCGGACAC . 63.0 17.0 52.0 0.0 . . . . Atlas-SNP SIRPB1 10326 hgsc.bcm.edu hg19 20 1551660 1551660 + Missense_Mutation SNP A A T rs201191774 by1000genomes;alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SIRPB1 NM_006065 exon4 c.T875A p.V292E CGGGACACATTTC . 145.0 40.0 96.0 0.0 . 83 . A|1.000;G|0.000 Atlas-SNP C20orf141 128653 hgsc.bcm.edu hg19 20 2796253 2796253 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C20orf141 NM_080739 exon2 c.T330A p.G110G TGAAGGTCCTGGA . 77.0 30.0 87.0 0.0 . 21 . . Atlas-SNP DDRGK1 65992 hgsc.bcm.edu hg19 20 3180750 3180750 + Splice_Site SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DDRGK1 NM_023935 exon5 c.409-2A>C . TCTGCCTGGAGAG . 71.0 29.0 62.0 0.0 . 21 . . Atlas-SNP SMOX 54498 hgsc.bcm.edu hg19 20 4168039 4168039 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SMOX NM_001270691 exon8 c.C1743T p.F581F CCTCTTCCAGCAG . 72.0 33.0 107.0 0.0 . 119 . . Atlas-SNP SLC23A2 9962 hgsc.bcm.edu hg19 20 4913132 4913132 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC23A2 NM_203327 exon3 c.A77T p.E26V TTTGCCTCGTCTT . 83.0 30.0 81.0 0.0 . 62 . . Atlas-SNP PLCB4 5332 hgsc.bcm.edu hg19 20 9449299 9449299 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PLCB4 NM_001172646 exon35 c.G3330A p.K1110K TATCAAGAATAAA . 37.0 11.0 35.0 0.0 . 204 . . Atlas-SNP PAK7 57144 hgsc.bcm.edu hg19 20 9546811 9546811 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PAK7 NM_177990 exon5 c.T1211A p.L404H AGGCTGAGGGAGC . 46.0 21.0 67.0 0.0 . 194 . . Atlas-SNP PAK7 57144 hgsc.bcm.edu hg19 20 9561478 9561478 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PAK7 NM_177990 exon4 c.A304G p.K102E TTTCTTTCCTTAG . 65.0 22.0 72.0 0.0 . 194 . . Atlas-SNP PAK7 57144 hgsc.bcm.edu hg19 20 9624845 9624845 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd PAK7,mouth,carcinoma,0,1 PAK7 NM_177990 exon3 c.A132T p.A44A CGTATCTGCTAAC . 87.0 35.0 107.0 0.0 . 194 . . Atlas-SNP KIF16B 55614 hgsc.bcm.edu hg19 20 16485049 16485049 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIF16B NM_001199865 exon10 c.A1144T p.R382X TCAGTCTGGCTAT . 114.0 51.0 143.0 0.0 . 305 . . Atlas-SNP CST9 128822 hgsc.bcm.edu hg19 20 23586297 23586297 + Silent SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CST9 NM_001008693 exon1 c.A205C p.R69R ACAGCCTGTAGGC . 121.0 56.0 107.0 0.0 . 26 . . Atlas-SNP HM13 81502 hgsc.bcm.edu hg19 20 30102430 30102430 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HM13 NM_178581 exon1 c.C76T p.P26S CGGCCGCCTTCCA . 79.0 29.0 68.0 0.0 . 52 . . Atlas-SNP FOXS1 2307 hgsc.bcm.edu hg19 20 30432970 30432970 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FOXS1 NM_004118 exon1 c.C376T p.P126S TGGCGGGGCCCCG . 27.0 13.0 27.0 0.0 . 29 . . Atlas-SNP XKR7 343702 hgsc.bcm.edu hg19 20 30585087 30585087 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . XKR7 NM_001011718 exon3 c.A1567T p.I523F CCTGTCATCCGGA . 29.0 16.0 29.0 0.0 . 62 . . Atlas-SNP BPIFA1 51297 hgsc.bcm.edu hg19 20 31827623 31827623 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_016583 exon4 c.A335G p.D112G TCACTGACCCCCA . 104.0 34.0 104.0 0.0 . . . . Atlas-SNP EDEM2 55741 hgsc.bcm.edu hg19 20 33714169 33714169 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EDEM2 NM_018217 exon8 c.A854G p.K285R ATGGCTTTGTTAT . 68.0 26.0 99.0 0.0 . 46 . . Atlas-SNP MMP24 10893 hgsc.bcm.edu hg19 20 33839777 33839777 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MMP24 NM_006690 exon3 c.C465A p.R155R CAAGCGCTATGCC . 67.0 33.0 87.0 0.0 . 35 . . Atlas-SNP CEP250 11190 hgsc.bcm.edu hg19 20 34065725 34065725 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CEP250 NM_007186 exon17 c.C1893G p.S631R GTGCAGCAGAATG . 97.0 48.0 118.0 0.0 . 141 . . Atlas-SNP SOGA1 140710 hgsc.bcm.edu hg19 20 35406236 35406236 + Splice_Site SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SOGA1 NM_199181 exon16 c.2994-2A>G . TCTGGCTCTCTTC . 53.0 15.0 58.0 0.0 . 136 . . Atlas-SNP SOGA1 140710 hgsc.bcm.edu hg19 20 35423004 35423004 + Splice_Site SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SOGA1 NM_199181 exon15 c.2769-2A>T . TGGTTCTGCGAAG . 66.0 35.0 77.0 0.0 . 136 . . Atlas-SNP LPIN3 64900 hgsc.bcm.edu hg19 20 39978721 39978721 + Silent SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LPIN3 NM_022896 exon7 c.C786G p.S262S CGAGTCCTCAGTG . 81.0 29.0 82.0 0.0 . 69 . . Atlas-SNP STK4 6789 hgsc.bcm.edu hg19 20 43607128 43607128 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . STK4 NM_006282 exon3 c.A161T p.Q54L CCGGCCAGATTGT . 60.0 24.0 72.0 0.0 . 84 . . Atlas-SNP SEMG2 6407 hgsc.bcm.edu hg19 20 43851485 43851485 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SEMG2 NM_003008 exon2 c.T1212C p.N404N GGAAAATAAAATA . 105.0 45.0 109.0 0.0 . 92 . . Atlas-SNP SLC12A5 57468 hgsc.bcm.edu hg19 20 44684872 44684872 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLC12A5 NM_001134771 exon22 c.A2940G p.E980E CCCAGAAGAGACG . 88.0 33.0 99.0 0.0 . 181 . . Atlas-SNP CSE1L 1434 hgsc.bcm.edu hg19 20 47675054 47675054 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CSE1L NM_001256135 exon2 c.A54G p.T18T GAAAACACTTGAT . 52.0 29.0 68.0 0.0 . 83 . . Atlas-SNP STX16 8675 hgsc.bcm.edu hg19 20 57246218 57246218 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . STX16 NM_001001433 exon7 c.A657G p.T219T TTTTACAGAGGAC . 72.0 27.0 87.0 0.0 . 36 . . Atlas-SNP PHACTR3 116154 hgsc.bcm.edu hg19 20 58349384 58349384 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PHACTR3 NM_080672 exon7 c.A1013T p.E338V GCAAGGAGAGGGA . 99.0 36.0 85.0 0.0 . 104 . . Atlas-SNP CDH26 60437 hgsc.bcm.edu hg19 20 58563998 58563998 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CDH26 NM_177980 exon9 c.A1063G p.I355V CTCATCATTGTCG . 70.0 29.0 64.0 0.0 . 229 . . Atlas-SNP USP25 29761 hgsc.bcm.edu hg19 21 17196476 17196476 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . USP25 NM_013396 exon11 c.A1199G p.Y400C TTTTATATTTGGA . 28.0 15.0 28.0 0.0 . 156 . . Atlas-SNP TMPRSS15 5651 hgsc.bcm.edu hg19 21 19732132 19732132 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMPRSS15 NM_002772 exon8 c.A822G p.T274T ATAATATGTATTA . 188.0 86.0 188.0 0.0 . 189 . . Atlas-SNP NCAM2 4685 hgsc.bcm.edu hg19 21 22782650 22782650 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NCAM2 NM_004540 exon10 c.A1252G p.I418V AATCCTATCAATA . 322.0 144.0 353.0 0.0 . 220 . . Atlas-SNP JAM2 58494 hgsc.bcm.edu hg19 21 27062262 27062262 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . JAM2 NM_021219 exon3 c.T218A p.V73D CCTTTGTCTACTA . 25.0 19.0 35.0 0.0 . 33 . . Atlas-SNP APP 351 hgsc.bcm.edu hg19 21 27277345 27277345 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd APP,NS,carcinoma,0,1 APP NM_000484 exon15 c.A1954G p.T652A GTCGAGTGGTCAG . 98.0 34.0 104.0 0.0 . 90 . . Atlas-SNP ADAMTS5 11096 hgsc.bcm.edu hg19 21 28306845 28306845 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ADAMTS5 NM_007038 exon4 c.A1629T p.G543G CCCCTTTCCACAA . 83.0 38.0 114.0 0.0 . 184 . . Atlas-SNP KRTAP11-1 337880 hgsc.bcm.edu hg19 21 32253723 32253723 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRTAP11-1 NM_175858 exon1 c.T121G p.C41G GCAAACAGATGCC . 109.0 45.0 113.0 0.0 . 46 . . Atlas-SNP SETD4 54093 hgsc.bcm.edu hg19 21 37408515 37408515 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SETD4 NM_017438 exon11 c.T1223C p.I408T TGGTTTATCAGGG . 86.0 35.0 100.0 0.0 . 37 . . Atlas-SNP DOPEY2 9980 hgsc.bcm.edu hg19 21 37572789 37572789 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DOPEY2 NM_005128 exon4 c.A481T p.I161F TCCGAGATCTCCG . 31.0 14.0 27.0 0.0 . 184 . . Atlas-SNP DOPEY2 9980 hgsc.bcm.edu hg19 21 37605269 37605269 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DOPEY2 NM_005128 exon15 c.A2518G p.S840G TATAAGAGCTCTG . 158.0 74.0 191.0 0.0 . 184 . . Atlas-SNP HMGN1 3150 hgsc.bcm.edu hg19 21 40720227 40720227 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HMGN1 NM_004965 exon4 c.A117T p.A39A CGCTGCTGCCTTT . 80.0 33.0 102.0 0.0 . 8 . . Atlas-SNP PRDM15 63977 hgsc.bcm.edu hg19 21 43281737 43281737 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PRDM15 NM_022115 exon7 c.A826C p.M276L TGTGCATGCTGGC . 59.0 21.0 75.0 0.0 . 110 . . Atlas-SNP KRTAP10-4 386672 hgsc.bcm.edu hg19 21 45994365 45994365 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRTAP10-4 NM_198687 exon1 c.T730C p.S244P GTGTGCTCTGAGG . 34.0 14.0 33.0 0.0 . 44 . . Atlas-SNP KRTAP12-2 353323 hgsc.bcm.edu hg19 21 46086475 46086475 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KRTAP12-2 NM_181684 exon1 c.G329T p.C110F GGCCTGCAGCTCA . 68.0 23.0 88.0 0.0 . 10 . . Atlas-SNP COL6A2 1292 hgsc.bcm.edu hg19 21 47552138 47552138 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL6A2 NM_001849 exon28 c.T2732A p.L911Q AATACCTGAACTC . 23.0 21.0 41.0 0.0 . 351 . . Atlas-SNP C21orf58 54058 hgsc.bcm.edu hg19 21 47735441 47735441 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . C21orf58 NM_058180 exon4 c.G391A p.D131N GGGCATCGTCCGG . 35.0 28.0 77.0 0.0 . 25 . . Atlas-SNP GNB1L 54584 hgsc.bcm.edu hg19 22 19808139 19808139 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd GNB1L,NS,carcinoma,0,1 GNB1L NM_053004 exon4 c.A236T p.Q79L CGCCCCTGGGGCA . 82.0 32.0 107.0 0.0 . 34 . . Atlas-SNP P2RX6 9127 hgsc.bcm.edu hg19 22 21380894 21380894 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_005446 exon12 c.C1314A p.S438S CCATTCCGGGAGC . 72.0 26.0 96.0 0.0 . . . . Atlas-SNP PRAME 23532 hgsc.bcm.edu hg19 22 22892325 22892325 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PRAME NM_206954 exon5 c.T776C p.M259T TTAATCATCTGGC . 80.0 32.0 75.0 0.0 . 78 . . Atlas-SNP SUSD2 56241 hgsc.bcm.edu hg19 22 24584255 24584255 + Missense_Mutation SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SUSD2 NM_019601 exon14 c.G2404A p.A802T GCGGTTGCGCTCG . 31.0 18.0 36.0 0.0 . 68 . . Atlas-SNP GGT5 2687 hgsc.bcm.edu hg19 22 24629889 24629889 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GGT5 NM_001099782 exon2 c.T257A p.M86K AGGCCCATGCTCT . 111.0 54.0 101.0 0.0 . 61 . . Atlas-SNP TMEM211 255349 hgsc.bcm.edu hg19 22 25334227 25334227 + Missense_Mutation SNP A A T rs112354981 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TMEM211 NM_001001663 exon2 c.T16A p.W6R GGAGCCAGCCTCC . 33.0 16.0 26.0 0.0 . 16 . A|0.500;G|0.500 Atlas-SNP KIAA1671 85379 hgsc.bcm.edu hg19 22 25581013 25581013 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . KIAA1671 NM_001145206 exon9 c.A5269G p.S1757G CCCAAGAGCCCCA . 106.0 40.0 139.0 0.0 . 28 . . Atlas-SNP MYO18B 84700 hgsc.bcm.edu hg19 22 26423048 26423048 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYO18B NM_032608 exon43 c.A7108T p.T2370S CCGACCACACCCA . 56.0 25.0 56.0 0.0 . 322 . . Atlas-SNP SEZ6L 23544 hgsc.bcm.edu hg19 22 26688929 26688929 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SEZ6L NM_021115 exon2 c.A652T p.R218W CCCCAGAGGCCAG . 84.0 38.0 156.0 0.0 . 174 . . Atlas-SNP HPS4 89781 hgsc.bcm.edu hg19 22 26849269 26849269 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HPS4 NM_022081 exon14 c.A2057C p.Q686P CCATCCTGAGGGT . 41.0 20.0 67.0 0.0 . 123 . . Atlas-SNP CRYBB1 1414 hgsc.bcm.edu hg19 22 26995533 26995533 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CRYBB1 NM_001887 exon6 c.A680T p.Q227L AGGGACTGCATCT . 97.0 40.0 112.0 0.0 . 49 . . Atlas-SNP CRYBA4 1413 hgsc.bcm.edu hg19 22 27026355 27026355 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CRYBA4 NM_001886 exon6 c.A495T p.E165D GCTGGAATGCGAT . 45.0 15.0 53.0 0.0 . 33 . . Atlas-SNP CHEK2 11200 hgsc.bcm.edu hg19 22 29130640 29130640 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CHEK2 NM_145862 exon2 c.A70T p.S24C TAACGCTGCCATG . 94.0 33.0 110.0 0.0 . 438 . . Atlas-SNP MORC2 22880 hgsc.bcm.edu hg19 22 31333654 31333654 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MORC2 NM_014941 exon16 c.T1228C p.S410P TGGCAGAGAGGTA . 44.0 19.0 38.0 0.0 . 78 . . Atlas-SNP BPIFC 254240 hgsc.bcm.edu hg19 22 32828474 32828474 + Missense_Mutation SNP C C A rs374301481 alternate_allele TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_174932 exon10 c.G1035T p.E345D GGGAGGCTCTGTG . 99.0 46.0 111.0 0.0 . . . . Atlas-SNP SYN3 8224 hgsc.bcm.edu hg19 22 32914296 32914296 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SYN3 NM_003490 exon12 c.T1344C p.P448P GGGCTGAGGAGAC . 25.0 12.0 22.0 0.0 . 77 . . Atlas-SNP MYH9 4627 hgsc.bcm.edu hg19 22 36684453 36684453 + Nonsense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MYH9 NM_002473 exon34 c.G4777T p.E1593X CCATCTCCCGCAC . 26.0 11.0 25.0 0.0 . 225 . . Atlas-SNP EIF3D 8664 hgsc.bcm.edu hg19 22 36920644 36920644 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EIF3D NM_003753 exon4 c.A305T p.Q102L CCTACCTGGGCAA . 56.0 28.0 75.0 0.0 . 37 . . Atlas-SNP ELFN2 114794 hgsc.bcm.edu hg19 22 37769351 37769351 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ELFN2 NM_052906 exon3 c.A2224T p.T742S AGTAGGTGGAGTC . 44.0 18.0 51.0 0.0 . 89 . . Atlas-SNP MICALL1 85377 hgsc.bcm.edu hg19 22 38318312 38318312 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MICALL1 NM_033386 exon6 c.C903A p.P301P CCGCCCCACCCCT . 23.0 12.0 20.0 0.0 . 53 . . Atlas-SNP APOBEC3D 140564 hgsc.bcm.edu hg19 22 39421150 39421150 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . APOBEC3D NM_152426 exon3 c.A286C p.R96R GCTAACAGGCGCT . 77.0 28.0 97.0 0.0 . 61 . . Atlas-SNP TTLL1 25809 hgsc.bcm.edu hg19 22 43459928 43459928 + Splice_Site SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TTLL1 NM_012263 exon8 c.639-1G>T . TTGTACCTAGGAG . 80.0 35.0 100.0 0.0 . 41 . . Atlas-SNP PRR5-ARHGAP8 553158 hgsc.bcm.edu hg19 22 45218295 45218295 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PRR5-ARHGAP8 NM_181334 exon9 c.A797T p.E266V TGAGTGAGCTCCA . 66.0 26.0 118.0 0.0 . 53 . . Atlas-SNP PKDREJ 10343 hgsc.bcm.edu hg19 22 46657787 46657787 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PKDREJ NM_006071 exon1 c.T1433C p.L478S AGGAACAAAGAAA . 54.0 26.0 73.0 0.0 . 195 . . Atlas-SNP TBC1D22A 25771 hgsc.bcm.edu hg19 22 47189485 47189485 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TBC1D22A NM_014346 exon3 c.C207A p.S69R TACCAGCGATGCC . 66.0 37.0 82.0 0.0 . 54 . . Atlas-SNP MOV10L1 54456 hgsc.bcm.edu hg19 22 50599429 50599429 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MOV10L1 NM_018995 exon26 c.A3499G p.T1167A AGTATTACAAACG . 115.0 41.0 147.0 0.0 . 238 . . Atlas-SNP NLGN4X 57502 hgsc.bcm.edu hg19 X 5810965 5810965 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . NLGN4X NM_181332 exon6 c.A2344T p.I782F TTGGAATCATGGT . 68.0 59.0 118.0 0.0 . 191 . . Atlas-SNP FAM9A 171482 hgsc.bcm.edu hg19 X 8767070 8767070 + Missense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAM9A NM_174951 exon3 c.A157T p.R53W CCTTCCTGCTGCG . 72.0 62.0 106.0 0.0 . 57 . . Atlas-SNP TLR7 51284 hgsc.bcm.edu hg19 X 12905637 12905637 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TLR7 NM_016562 exon3 c.T2010G p.F670L AGTTTTTGATGGT . 46.0 32.0 61.0 0.0 . 125 . . Atlas-SNP TLR8 51311 hgsc.bcm.edu hg19 X 12938413 12938413 + Silent SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TLR8 NM_138636 exon2 c.C1254A p.S418S TTTCTCCAATCTG . 40.0 38.0 55.0 0.0 . 134 . . Atlas-SNP DDX53 168400 hgsc.bcm.edu hg19 X 23019627 23019627 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DDX53 NM_182699 exon1 c.A1453G p.S485G TTGTCAAGCGACT . 80.0 74.0 115.0 0.0 . 76 . . Atlas-SNP FAM47C 442444 hgsc.bcm.edu hg19 X 37027900 37027900 + Missense_Mutation SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . FAM47C NM_001013736 exon1 c.C1417T p.H473Y GTGTCCCATCTCT . 50.0 46.0 54.0 0.0 . 267 . . Atlas-SNP UBA1 7317 hgsc.bcm.edu hg19 X 47074244 47074244 + Silent SNP G G A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . UBA1 NM_153280 exon26 c.G3093A p.V1031V CCACGTGCGGGCG . 25.0 24.0 34.0 0.0 . 89 . . Atlas-SNP SUV39H1 6839 hgsc.bcm.edu hg19 X 48558575 48558575 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SUV39H1 NM_003173 exon3 c.A259T p.K87X ATCCTCAAGCAGT . 115.0 104.0 135.0 1.0 . 36 . . Atlas-SNP GPR173 54328 hgsc.bcm.edu hg19 X 53106453 53106453 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . GPR173 NM_018969 exon2 c.T650C p.M217T GCAAGATGAAGCC . 30.0 27.0 20.0 0.0 . 66 . . Atlas-SNP TRO 7216 hgsc.bcm.edu hg19 X 54955840 54955840 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRO NM_001039705 exon12 c.A2683T p.T895S CTCAGCACCAGTG . 43.0 43.0 55.0 0.0 . 246 . . Atlas-SNP MTMR8 55613 hgsc.bcm.edu hg19 X 63490847 63490847 + Missense_Mutation SNP C C G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MTMR8 NM_017677 exon13 c.G1588C p.D530H GCACATCTGTCTC . 91.0 86.0 120.0 0.0 . 178 . . Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66937427 66937427 + Silent SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AR NM_000044 exon5 c.A2281C p.R761R AACTCCAGGATGC . 58.0 52.0 58.0 0.0 . 249 . . Atlas-SNP RLIM 51132 hgsc.bcm.edu hg19 X 73812565 73812565 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RLIM NM_183353 exon5 c.A585T p.S195S TTCAGTTGAATTT . 43.0 33.0 47.0 0.0 . 90 . . Atlas-SNP ATRX 546 hgsc.bcm.edu hg19 X 76938245 76938245 + Nonsense_Mutation SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ATRX NM_000489 exon9 c.A2503T p.R835X TGGTTCTGGCAGC . 53.0 52.0 54.0 0.0 . 833 . . Atlas-SNP BRWD3 254065 hgsc.bcm.edu hg19 X 79979304 79979304 + Silent SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BRWD3 NM_153252 exon16 c.A1593G p.T531T AGAATCTGTGCAG . 47.0 45.0 52.0 0.0 . 251 . . Atlas-SNP RPS6KA6 27330 hgsc.bcm.edu hg19 X 83390124 83390124 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RPS6KA6 NM_014496 exon7 c.T596G p.L199R GGCTTCAGGTCTC . 260.0 233.0 301.0 0.0 . 116 . . Atlas-SNP DACH2 117154 hgsc.bcm.edu hg19 X 85769362 85769362 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DACH2 NM_053281 exon3 c.G608T p.G203V TCCCAGGCCTCTT . 197.0 176.0 224.0 0.0 . 263 . . Atlas-SNP PCDH11X 27328 hgsc.bcm.edu hg19 X 91873834 91873834 + Silent SNP C C T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PCDH11X NM_032968 exon7 c.C3939T p.P1313P TCATCCCAGTGAT . 162.0 151.0 172.0 0.0 . 714 . . Atlas-SNP ARMCX3 51566 hgsc.bcm.edu hg19 X 100880234 100880234 + Nonsense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . ARMCX3 NM_016607 exon5 c.A265T p.R89X GGAACCAGAGCTA . 30.0 29.0 37.0 0.0 . 33 . . Atlas-SNP COL4A5 1287 hgsc.bcm.edu hg19 X 107821343 107821343 + Silent SNP T T A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL4A5 NM_000495 exon12 c.T681A p.G227G CAAAGGTGAAAAA . 159.0 145.0 192.0 0.0 . 262 . . Atlas-SNP PAK3 5063 hgsc.bcm.edu hg19 X 110391047 110391047 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PAK3 NM_001128168 exon5 c.T467C p.L156P CTGTTCTAGATGT . 250.0 223.0 244.0 0.0 . 179 . . Atlas-SNP RBMXL3 139804 hgsc.bcm.edu hg19 X 114424720 114424720 + Missense_Mutation SNP T T C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RBMXL3 NM_001145346 exon1 c.T716C p.V239A CGCGGGTCCGGGA . 33.0 28.0 42.0 0.0 . 83 . . Atlas-SNP DOCK11 139818 hgsc.bcm.edu hg19 X 117722105 117722105 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DOCK11 NM_144658 exon17 c.A1801G p.I601V GATTGTATTACTT . 47.0 45.0 54.0 0.0 . 185 . . Atlas-SNP DOCK11 139818 hgsc.bcm.edu hg19 X 117722147 117722147 + Missense_Mutation SNP T T G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DOCK11 NM_144658 exon17 c.T1843G p.C615G AAGAATTGCCAAA . 46.0 41.0 57.0 0.0 . 185 . . Atlas-SNP IGSF1 3547 hgsc.bcm.edu hg19 X 130419759 130419759 + Missense_Mutation SNP G G T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . IGSF1 NM_001555 exon4 c.C361A p.L121I ACTCTAGAACTTT . 40.0 38.0 35.0 0.0 . 231 . . Atlas-SNP PLAC1 10761 hgsc.bcm.edu hg19 X 133700330 133700330 + Missense_Mutation SNP C C A novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PLAC1 NM_021796 exon3 c.G383T p.C128F ATGGAGCAGGGCT . 76.0 70.0 70.0 0.0 . 17 . . Atlas-SNP SAGE1 55511 hgsc.bcm.edu hg19 X 134993960 134993960 + Missense_Mutation SNP A A C novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SAGE1 NM_018666 exon18 c.A2369C p.N790T CCAAAAACTACAG . 75.0 68.0 84.0 0.0 . 160 . . Atlas-SNP MAGEC2 51438 hgsc.bcm.edu hg19 X 141291576 141291576 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MAGEC2 NM_016249 exon3 c.T198A p.P66P CTCCTCAGGACCA . 37.0 34.0 44.0 0.0 . 102 . . Atlas-SNP SLITRK2 84631 hgsc.bcm.edu hg19 X 144904336 144904336 + Silent SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . SLITRK2 NM_001144005 exon5 c.A393T p.L131L CTTCCTAGGCCTG . 58.0 52.0 102.0 0.0 . 221 . . Atlas-SNP AFF2 2334 hgsc.bcm.edu hg19 X 147967466 147967466 + Missense_Mutation SNP A A T novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . AFF2 NM_002025 exon8 c.A1310T p.E437V ACCTTGAGCCTGT . 48.0 43.0 55.0 0.0 . 679 . . Atlas-SNP MTMR1 8776 hgsc.bcm.edu hg19 X 149867740 149867740 + Silent SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . MTMR1 NM_003828 exon2 c.A219G p.S73S AGGTTCAGTGACA . 32.0 30.0 45.0 0.0 . 82 . . Atlas-SNP DKC1 1736 hgsc.bcm.edu hg19 X 153996705 153996705 + Missense_Mutation SNP A A G novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . DKC1 NM_001363 exon8 c.A769G p.K257E AGTGAAAAGGTAT . 30.0 27.0 40.0 0.0 . 41 . . Atlas-SNP CFHR1 3078 hgsc.bcm.edu hg19 1 196799671 196799671 + Frame_Shift_Del DEL G G - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CFHR1 NM_002113 exon5 c.648delT p.N216fs . . 183.0 14.0 261.0 0.0 . 47 . . Atlas-INDEL RB1 5925 hgsc.bcm.edu hg19 13 48953748 48953748 + Frame_Shift_Del DEL C C - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RB1 NM_000321 exon14 c.1350delT p.V450fs . . 211.0 191.0 276.0 0.0 . 1068 . . Atlas-Indel,Pindel RFPL4B 442247 hgsc.bcm.edu hg19 6 112671556 112671556 + Frame_Shift_Del DEL G G - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . RFPL4B NM_001013734 exon3 c.645delA p.L215fs . . 49.0 28.0 45.0 0.0 . 36 . . Atlas-Indel,Pindel BTG1 694 hgsc.bcm.edu hg19 12 92539312 92539324 + Frame_Shift_Del DEL GGGGGCGGCGTGC GGGGGCGGCGTGC - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 GGGGGCGGCGTGC GGGGGCGGCGTGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . BTG1 NM_001731 wholegene . . . . 44.0 19.0 43.0 0.0 . 30 . . Atlas-Indel,Pindel EYS 346007 hgsc.bcm.edu hg19 6 66204911 66204911 + Frame_Shift_Del DEL T T - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EYS NM_001142801 exon4 c.394delG p.G132fs . . 99.0 44.0 102.0 0.0 . 527 . . Atlas-Indel,Pindel STON1-GTF2A1L 286749 hgsc.bcm.edu hg19 2 48808054 48808054 + Frame_Shift_Del DEL C C - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . STON1-GTF2A1L NM_001198593 exon2 c.281delT p.I94fs . . 107.0 50.0 133.0 0.0 . 180 . . Atlas-Indel,Pindel EML5 161436 hgsc.bcm.edu hg19 14 89154769 89154769 + Frame_Shift_Del DEL T T - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . EML5 NM_183387 exon18 c.2589delT p.N863fs . . 56.0 23.0 60.0 0.0 . 141 . . Atlas-Indel,Pindel COL6A3 1293 hgsc.bcm.edu hg19 2 238303641 238303641 + Frame_Shift_Del DEL G G - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . COL6A3 NM_004369 exon3 c.299delA p.Q100fs . . 129.0 63.0 156.0 0.0 . 608 . . Atlas-Indel,Pindel CFH 3075 hgsc.bcm.edu hg19 1 196714988 196714988 + Frame_Shift_Del DEL G G - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CFH NM_000186 exon21 c.3351delT p.N1117fs . . 114.0 87.0 239.0 0.0 . 251 . . Atlas-Indel,Pindel CCDC176 80127 hgsc.bcm.edu hg19 14 74514746 74514757 + In_Frame_Del DEL AAGAGAGTCATA AAGAGAGTCATA - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 AAGAGAGTCATA AAGAGAGTCATA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . . NM_025057 exon7 c.760_771del p.254_257del . . 149.0 24.0 227.0 0.0 . . . . Atlas-Indel,Pindel CDK5R2 8941 hgsc.bcm.edu hg19 2 219825484 219825484 + Frame_Shift_Del DEL C C - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . CDK5R2 NM_003936 exon1 c.941delA p.D314fs . . 76.0 32.0 71.0 0.0 . 17 . . Atlas-Indel,Pindel TRIM13 10206 hgsc.bcm.edu hg19 13 50589218 50589250 + RNA DEL AAAAAAAAAAAAAATATATATATATATATATAT AAAAAAAAAAAAAATATATATATATATATATAT - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 AAAAAAAAAAAAAATATATATATATATATATAT AAAAAAAAAAAAAATATATATATATATATATAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . TRIM13 . . . . . . 23.0 15.0 30.0 0.0 . 30 . . Atlas-INDEL PDZD4 57595 hgsc.bcm.edu hg19 X 153073936 153073936 + Frame_Shift_Del DEL C C - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PDZD4 NM_032512 exon2 c.176delA p.D59fs . . 46.0 40.0 99.0 0.0 . 67 . . Atlas-Indel,Pindel LPPR4 0 hgsc.bcm.edu hg19 1 99771914 99771914 + Frame_Shift_Del DEL C C - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . LPPR4 NM_014839 exon7 c.1639delT p.S547fs . . 69.0 36.0 101.0 0.0 . 143 . . Atlas-Indel,Pindel PTPRB 5787 hgsc.bcm.edu hg19 12 70983979 70983979 + Frame_Shift_Del DEL A A - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . PTPRB NM_001109754 exon8 c.1816delA p.N606fs . . 111.0 38.0 152.0 0.0 . 676 . . Atlas-Indel,Pindel HDAC6 10013 hgsc.bcm.edu hg19 X 48681555 48681555 + Frame_Shift_Del DEL G G - novel TCGA-UB-A7MB-01A-11D-A33Q-10 TCGA-UB-A7MB-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c7af114d-6f4d-4bf8-978c-4eebf696b12e 2cff442a-ea76-4fbd-9c30-57cc414c49bd . HDAC6 NM_006044 exon25 c.2745delA p.T915fs . . 67.0 31.0 70.0 0.0 . 111 . . Pindel