Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
DOCK7	85440	hgsc.bcm.edu	hg19	1	62958432	62958432	+	Silent	SNP	G	G	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	DOCK7	NM_001271999	exon41	c.C5277T	p.Y1759Y	AGTAAAGTATTTT	.	227.0	171.0	353.0	0.0	.	184	.	.	Atlas-SNP
ATXN7L2	127002	hgsc.bcm.edu	hg19	1	110034053	110034053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	ATXN7L2,colon,carcinoma,0,1	ATXN7L2	NM_153340	exon10	c.G1868A	p.R623Q	TGAAGCGGGCAGG	.	110.0	69.0	192.0	0.0	.	60	.	.	Atlas-SNP
GPR161	23432	hgsc.bcm.edu	hg19	1	168074111	168074111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	GPR161	NM_001267609	exon3	c.C38A	p.T13N	CGTGGGGTGGGCA	.	94.0	28.0	57.0	0.0	.	56	.	.	Atlas-SNP
FMO4	2329	hgsc.bcm.edu	hg19	1	171289026	171289026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	FMO4	NM_002022	exon3	c.G62A	p.C21Y	AATGCTGTGTGGA	.	175.0	90.0	77.0	0.0	.	64	.	.	Atlas-SNP
GPR52	9293	hgsc.bcm.edu	hg19	1	174417781	174417781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	GPR52	NM_005684	exon1	c.T532C	p.F178L	TCCTTTTTTGGCT	.	142.0	25.0	70.0	0.0	.	40	.	.	Atlas-SNP
INTS7	25896	hgsc.bcm.edu	hg19	1	212161330	212161330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	INTS7	NM_015434	exon8	c.G895A	p.A299T	GGAGGGCACACTC	.	124.0	32.0	64.0	0.0	.	68	.	.	Atlas-SNP
CDC42BPA	8476	hgsc.bcm.edu	hg19	1	227300124	227300124	+	Splice_Site	SNP	C	C	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	CDC42BPA	NM_003607	exon15	c.1891-1G>A	.	TTCCAGCTTTAAA	.	107.0	25.0	63.0	0.0	.	528	.	.	Atlas-SNP
HADHA	3030	hgsc.bcm.edu	hg19	2	26416514	26416514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	HADHA	NM_000182	exon17	c.T1817C	p.V606A	CCAAAGACTTTGC	.	137.0	47.0	152.0	0.0	.	87	.	.	Atlas-SNP
DRD3	1814	hgsc.bcm.edu	hg19	3	113890665	113890665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	DRD3	NM_033663	exon2	c.G175T	p.A59S	GCAGGGCCCGCTC	.	144.0	61.0	128.0	0.0	.	76	.	.	Atlas-SNP
CCKAR	886	hgsc.bcm.edu	hg19	4	26483375	26483375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	CCKAR	NM_000730	exon5	c.C1172A	p.P391H	GGACCAGGATTGG	.	168.0	57.0	136.0	0.0	.	74	.	.	Atlas-SNP
CCKAR	886	hgsc.bcm.edu	hg19	4	26483376	26483376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	CCKAR	NM_000730	exon5	c.C1171A	p.P391T	GACCAGGATTGGG	.	169.0	59.0	136.0	0.0	.	74	.	.	Atlas-SNP
IQGAP2	10788	hgsc.bcm.edu	hg19	5	75991366	75991366	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	IQGAP2	NM_006633	exon32	c.G4081C	p.E1361Q	ATGATTGAAGATG	.	374.0	156.0	336.0	0.0	.	186	.	.	Atlas-SNP
APC	324	hgsc.bcm.edu	hg19	5	112162900	112162900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	APC	NM_001127510	exon13	c.G1504A	p.G502R	TATGCTGGAATGG	.	123.0	51.0	138.0	0.0	.	4158	.	.	Atlas-SNP
APC	324	hgsc.bcm.edu	hg19	5	112162901	112162901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	APC	NM_001127510	exon13	c.G1505T	p.G502V	ATGCTGGAATGGC	.	123.0	51.0	138.0	0.0	.	4158	.	.	Atlas-SNP
HLA-C	3107	hgsc.bcm.edu	hg19	6	31239099	31239099	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	HLA-C	NM_002117	exon3	c.G370C	p.G124R	CGCAGCCAGACAT	.	214.0	21.0	83.0	0.0	.	92	.	.	Atlas-SNP
BTNL2	56244	hgsc.bcm.edu	hg19	6	32369565	32369565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	BTNL2	NM_019602	exon4	c.C727A	p.L243M	TACCCAGCTCAGT	.	153.0	13.0	62.0	0.0	.	50	.	.	Atlas-SNP
CDKN1A	1026	hgsc.bcm.edu	hg19	6	36652015	36652015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	CDKN1A	NM_001220778	exon2	c.G137T	p.R46L	AGGCCCGTGAGCG	.	75.0	41.0	47.0	0.0	.	27	.	.	Atlas-SNP
RBM28	55131	hgsc.bcm.edu	hg19	7	127964620	127964620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	RBM28	NM_018077	exon12	c.G1331T	p.R444L	CCTTCTCGGGCCA	.	118.0	40.0	113.0	0.0	.	71	.	.	Atlas-SNP
WHSC1L1	54904	hgsc.bcm.edu	hg19	8	38146244	38146244	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	WHSC1L1	NM_023034	exon19	c.C3262T	p.Q1088X	CAACCTGGATCTG	.	159.0	51.0	97.0	0.0	.	137	.	.	Atlas-SNP
STK3	6788	hgsc.bcm.edu	hg19	8	99608325	99608325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	STK3	NM_001256312	exon9	c.G841A	p.D281N	CAAAATCGGTGAA	.	315.0	87.0	199.0	0.0	.	47	.	.	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	hg19	9	396879	396879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	DOCK8	NM_203447	exon25	c.C3065T	p.T1022I	TAACTACTATTGT	.	185.0	66.0	198.0	0.0	.	401	.	.	Atlas-SNP
KCNV2	169522	hgsc.bcm.edu	hg19	9	2718363	2718363	+	Silent	SNP	C	C	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	KCNV2	NM_133497	exon1	c.C624T	p.D208D	GCGCGACGAGCTG	.	86.0	37.0	58.0	0.0	.	72	.	.	Atlas-SNP
NANS	54187	hgsc.bcm.edu	hg19	9	100823187	100823187	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	NANS	NM_018946	exon2	c.C256T	p.R86X	CACAAACGACATC	.	162.0	62.0	140.0	0.0	.	24	.	.	Atlas-SNP
GARNL3	84253	hgsc.bcm.edu	hg19	9	130104554	130104554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	GARNL3	NM_032293	exon14	c.C1192T	p.R398C	CGTCGGCGTACCC	.	108.0	40.0	107.0	0.0	.	83	.	.	Atlas-SNP
CXCL12	6387	hgsc.bcm.edu	hg19	10	44880397	44880397	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	CXCL12	NM_199168	exon1	c.C57G	p.S19R	ACCGTCGCTGAGG	.	51.0	22.0	38.0	0.0	.	37	.	.	Atlas-SNP
H2AFY2	55506	hgsc.bcm.edu	hg19	10	71835496	71835496	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	H2AFY2	NM_018649	exon2	c.C82G	p.L28V	GGGAGGCTGATGC	.	242.0	147.0	186.0	0.0	.	30	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1282675	1282675	+	Missense_Mutation	SNP	G	G	A	rs372911529		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	MUC5B	NM_002458	exon49	c.G17126A	p.R5709Q	AGAGGCGGGTCCA	.	35.0	16.0	34.0	0.0	.	473	.	.	Atlas-SNP
ST5	6764	hgsc.bcm.edu	hg19	11	8734241	8734241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	ST5	NM_005418	exon12	c.C2029T	p.R677C	GGGCGCGCTTCAG	.	38.0	9.0	30.0	0.0	.	85	.	.	Atlas-SNP
CORO1B	57175	hgsc.bcm.edu	hg19	11	67209971	67209971	+	Silent	SNP	G	G	C	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	CORO1B	NM_020441	exon2	c.C129G	p.V43V	GGGGTTGACGGCG	.	82.0	33.0	98.0	0.0	.	30	.	.	Atlas-SNP
CHD4	1108	hgsc.bcm.edu	hg19	12	6701864	6701864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	CHD4	NM_001273	exon18	c.C2772G	p.F924L	TTACTGGAACCTC	.	103.0	48.0	91.0	0.0	.	539	.	.	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	hg19	12	104056724	104056724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	STAB2	NM_017564	exon18	c.T1970C	p.I657T	CCTCCATTGTCCC	.	218.0	137.0	128.0	0.0	.	370	.	.	Atlas-SNP
DDX54	79039	hgsc.bcm.edu	hg19	12	113600779	113600779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	DDX54	NM_024072	exon17	c.A2153G	p.D718G	GCTTCATCCCCCA	.	45.0	5.0	24.0	0.0	.	73	.	.	Atlas-SNP
FERMT2	10979	hgsc.bcm.edu	hg19	14	53360119	53360119	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	FERMT2	NM_001135000	exon4	c.C418G	p.L140V	TTAAGAGAGAAAG	.	60.0	27.0	54.0	0.0	.	59	.	.	Atlas-SNP
PCNXL4	64430	hgsc.bcm.edu	hg19	14	60590986	60590986	+	Silent	SNP	T	T	G	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	.	NM_022495	exon8	c.T1395G	p.V465V	CAGAGTTGATGAA	.	116.0	37.0	89.0	0.0	.	.	.	.	Atlas-SNP
PDE8A	5151	hgsc.bcm.edu	hg19	15	85656625	85656625	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	PDE8A	NM_002605	exon13	c.C1132G	p.H378D	AGACGACACTCTT	.	105.0	48.0	66.0	0.0	.	50	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	347849	347849	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	AXIN1	NM_181050	exon6	c.G1657T	p.E553X	TGGCCTCGGCCTC	.	37.0	28.0	52.0	0.0	.	290	.	.	Atlas-SNP
KRT33A	3883	hgsc.bcm.edu	hg19	17	39506783	39506783	+	Silent	SNP	C	C	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	KRT33A	NM_004138	exon1	c.G237T	p.R79R	GTTGTCCCGCTCC	.	119.0	44.0	126.0	0.0	.	53	.	.	Atlas-SNP
ADAM11	4185	hgsc.bcm.edu	hg19	17	42853002	42853002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	ADAM11	NM_002390	exon17	c.C1443A	p.H481Q	GACTCACGACGCC	.	71.0	26.0	60.0	0.0	.	118	.	.	Atlas-SNP
HOXB2	3212	hgsc.bcm.edu	hg19	17	46620730	46620730	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	HOXB2	NM_002145	exon2	c.C771G	p.S257R	GTCCGCGCTTAAG	.	57.0	24.0	55.0	0.0	.	23	.	.	Atlas-SNP
PRAC	84366	hgsc.bcm.edu	hg19	17	46799700	46799700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	PRAC	NM_032391	exon1	c.A55G	p.S19G	AAGCACTCTTGGA	.	96.0	37.0	82.0	0.0	.	6	.	.	Atlas-SNP
UNK	85451	hgsc.bcm.edu	hg19	17	73808617	73808617	+	Silent	SNP	G	G	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	UNK	NM_001080419	exon4	c.G573A	p.A191A	GGCTGCGAGCCAT	.	89.0	41.0	116.0	0.0	.	87	.	.	Atlas-SNP
RPTOR	57521	hgsc.bcm.edu	hg19	17	78931502	78931502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	RPTOR,colon,carcinoma,0,1	RPTOR	NM_020761	exon29	c.G3449T	p.W1150L	GGATCTGGGACAC	.	52.0	22.0	57.0	0.0	.	122	.	.	Atlas-SNP
RPTOR	57521	hgsc.bcm.edu	hg19	17	78931503	78931503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	RPTOR	NM_020761	exon29	c.G3450T	p.W1150C	GATCTGGGACACA	.	51.0	21.0	56.0	0.0	.	122	.	.	Atlas-SNP
VSTM2B	342865	hgsc.bcm.edu	hg19	19	30054822	30054822	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	VSTM2B	NM_001146339	exon5	c.G839C	p.R280P	TCCTGCGCCTGCT	.	59.0	11.0	72.0	0.0	.	15	.	.	Atlas-SNP
PSG6	5675	hgsc.bcm.edu	hg19	19	43420327	43420327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	PSG6,NS,carcinoma,0,1	PSG6	NM_001031850	exon2	c.G377A	p.R126Q	TCGCCTCGCTTTA	.	91.0	8.0	70.0	0.0	.	89	.	.	Atlas-SNP
ERCC2	2068	hgsc.bcm.edu	hg19	19	45867148	45867148	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	ERCC2	NM_000400	exon11	c.G971C	p.R324P	GCCGTGCGGATGG	.	30.0	16.0	20.0	0.0	.	78	.	.	Atlas-SNP
ARHGAP40	343578	hgsc.bcm.edu	hg19	20	37267403	37267403	+	Splice_Site	SNP	G	G	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	ARHGAP40	NM_001164431	exon8	c.1039-1G>T	.	CTGACAGCTGCTG	.	121.0	5.0	95.0	0.0	.	50	.	.	Atlas-SNP
TBC1D10A	83874	hgsc.bcm.edu	hg19	22	30722679	30722679	+	Silent	SNP	C	C	A	rs375400780		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	TBC1D10A	NM_031937	exon1	c.G192T	p.S64S	GCCCTGCGAGCCC	.	108.0	54.0	119.0	0.0	.	49	.	.	Atlas-SNP
RBM10	8241	hgsc.bcm.edu	hg19	X	47030582	47030582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	RBM10	NM_001204468	exon4	c.G552T	p.E184D	GGAGGAGGATGAG	.	110.0	5.0	99.0	0.0	.	117	.	.	Atlas-SNP
SUV39H1	6839	hgsc.bcm.edu	hg19	X	48558697	48558697	+	Silent	SNP	G	G	C	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	SUV39H1	NM_003173	exon3	c.G381C	p.A127A	GCGGGCGCTCCGT	.	188.0	78.0	179.0	0.0	.	36	.	.	Atlas-SNP
VSIG4	11326	hgsc.bcm.edu	hg19	X	65242305	65242305	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	VSIG4	NM_007268	exon8	c.A1000T	p.M334L	CCCTCATGGTTTC	.	112.0	28.0	100.0	0.0	.	54	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	7236	7236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	.	ENST00000361624	exon1	c.G1333A	p.D445N	TACCCCGATGCAT	.	53.0	11.0	11.0	0.0	.	.	.	.	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	11453	11453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	.	ENST00000361381	exon1	c.G694A	p.A232T	GTACTTGCCGCAG	.	60.0	57.0	14.0	0.0	.	.	.	.	Atlas-SNP
HADHA	3030	hgsc.bcm.edu	hg19	2	26416510	26416510	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	HADHA	NM_000182	exon17	c.1822delG	p.G608fs	.	.	136.0	46.0	154.0	0.0	.	87	.	.	Atlas-INDEL
COL18A1	80781	hgsc.bcm.edu	hg19	21	46875754	46875756	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-XR-A8TC-01A-11D-A35Z-10	TCGA-XR-A8TC-10A-01D-A35Z-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f6f8eb64-43ca-4cbb-996d-6a32332040cb	7fbbfbff-4266-4236-98a1-03b439b86b0a	.	COL18A1	NM_030582	exon1	c.309_311del	p.103_104del	.	.	104.0	39.0	108.0	0.0	.	129	.	.	Atlas-INDEL