Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TNFRSF18	8784	hgsc.bcm.edu	hg19	1	1140775	1140775	+	Silent	SNP	G	G	C	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	TNFRSF18	NM_148902	exon2	c.C285G	p.P95P	GCCTGGGGGACAA	.	323.0	111.0	374.0	0.0	.	13	.	.	Atlas-SNP
ACAP3	116983	hgsc.bcm.edu	hg19	1	1229084	1229084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	ACAP3	NM_030649	exon24	c.C2365T	p.R789C	CCAGACGGAGCCT	.	14.0	9.0	16.0	0.0	.	87	.	.	Atlas-SNP
STX6	10228	hgsc.bcm.edu	hg19	1	180991796	180991796	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	STX6	NM_005819	exon1	c.A14T	p.D5V	AAGGGGTCCTCCA	.	234.0	48.0	177.0	0.0	.	21	.	.	Atlas-SNP
ARPC5	10092	hgsc.bcm.edu	hg19	1	183602268	183602268	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	ARPC5	NM_001270439	exon2	c.A174G	p.L58L	TGCCTGTAGGGCA	.	220.0	39.0	121.0	0.0	.	6	.	.	Atlas-SNP
CR1	1378	hgsc.bcm.edu	hg19	1	207748949	207748949	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	CR1	NM_000651	exon28	c.C4461T	p.L1487L	CCGACTCATTGGT	.	474.0	97.0	281.0	0.0	.	354	.	.	Atlas-SNP
AHCTF1	25909	hgsc.bcm.edu	hg19	1	247024559	247024559	+	Silent	SNP	A	A	C	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	AHCTF1	NM_015446	exon29	c.T3801G	p.P1267P	TTTTTTAGGTGTA	.	387.0	170.0	203.0	0.0	.	187	.	.	Atlas-SNP
FAM179A	165186	hgsc.bcm.edu	hg19	2	29222198	29222198	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	FAM179A	NM_199280	exon4	c.G291C	p.L97F	GGCCTTGTCTTTG	.	133.0	51.0	179.0	0.0	.	106	.	.	Atlas-SNP
SFXN5	94097	hgsc.bcm.edu	hg19	2	73250320	73250320	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	SFXN5	NM_144579	exon4	c.G273A	p.K91K	TACCTGCTTGATT	.	39.0	13.0	73.0	0.0	.	31	.	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125555843	125555843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	CNTNAP5,right_upper_lobe,carcinoma,0,1	CNTNAP5	NM_130773	exon19	c.C3160T	p.L1054F	CTTTTGCTCTTTA	.	108.0	27.0	123.0	0.0	.	405	.	.	Atlas-SNP
SCN1A	6323	hgsc.bcm.edu	hg19	2	166852580	166852580	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	SCN1A	NM_001165963	exon24	c.T4524C	p.Y1508Y	TGCATTATAGTAT	.	156.0	57.0	168.0	0.0	.	641	.	.	Atlas-SNP
FSIP2	401024	hgsc.bcm.edu	hg19	2	186670241	186670241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	FSIP2	NM_173651	exon17	c.C16475T	p.S5492F	ACTGGTCTTCCAC	.	238.0	89.0	231.0	0.0	.	251	.	.	Atlas-SNP
PVRL3	25945	hgsc.bcm.edu	hg19	3	110837591	110837591	+	Silent	SNP	T	T	G	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	PVRL3	NM_001243286	exon3	c.T591G	p.T197T	AGCCACTGGAAAA	.	199.0	72.0	198.0	0.0	.	78	.	.	Atlas-SNP
FAM200B	285550	hgsc.bcm.edu	hg19	4	15688697	15688697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	FAM200B	NM_001145191	exon2	c.G97A	p.D33N	AATAGTGACAATA	.	495.0	174.0	527.0	1.0	.	56	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88537513	88537513	+	Missense_Mutation	SNP	A	A	C	rs112275895		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	DSPP	NM_014208	exon5	c.A3699C	p.E1233D	CAATGAAAGCAGC	.	383.0	39.0	347.0	0.0	.	174	.	A|0.500;C|0.500	Atlas-SNP
PITX2	5308	hgsc.bcm.edu	hg19	4	111543434	111543434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	PITX2	NM_000325	exon1	c.C183A	p.D61E	GGAGGTGTCGGAG	.	182.0	79.0	205.0	0.0	.	73	.	.	Atlas-SNP
RASA1	5921	hgsc.bcm.edu	hg19	5	86668007	86668007	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	RASA1	NM_002890	exon13	c.C1771G	p.R591G	CGCCTTCGTCAGG	.	158.0	48.0	148.0	0.0	.	213	.	.	Atlas-SNP
RFESD	317671	hgsc.bcm.edu	hg19	5	94991973	94991973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	RFESD	NM_001131066	exon6	c.A593T	p.Y198F	ATTTTTATGCCAC	.	71.0	26.0	84.0	0.0	.	22	.	.	Atlas-SNP
FTMT	94033	hgsc.bcm.edu	hg19	5	121187819	121187819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	FTMT	NM_177478	exon1	c.C161A	p.S54Y	CCGCCTCCTCCCG	.	52.0	21.0	43.0	0.0	.	71	.	.	Atlas-SNP
ANKHD1	54882	hgsc.bcm.edu	hg19	5	139908010	139908010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	ANKHD1	NM_017747	exon29	c.C5479T	p.P1827S	TTCCAGCCCGCTA	.	143.0	58.0	151.0	0.0	.	233	.	.	Atlas-SNP
PCDHGA11	56105	hgsc.bcm.edu	hg19	5	140801283	140801283	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	PCDHGA11	NM_032091	exon1	c.G489A	p.V163V	AGATGTGGGCGTG	.	124.0	35.0	125.0	0.0	.	128	.	.	Atlas-SNP
GALNT10	55568	hgsc.bcm.edu	hg19	5	153570579	153570579	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	GALNT10	NM_198321	exon1	c.G153A	p.A51A	GGCGGCGGGACAG	.	38.0	11.0	54.0	0.0	.	70	.	.	Atlas-SNP
ERGIC1	57222	hgsc.bcm.edu	hg19	5	172359459	172359459	+	Missense_Mutation	SNP	A	A	C	rs140909162		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	ERGIC1	NM_001031711	exon8	c.A562C	p.I188L	GACTACATCCTGA	.	65.0	25.0	72.0	0.0	.	35	.	A|1.000;C|0.000	Atlas-SNP
B4GALT7	11285	hgsc.bcm.edu	hg19	5	177036620	177036620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	B4GALT7	NM_007255	exon6	c.G908A	p.G303D	CTGTGGGCGGGGC	.	127.0	48.0	137.0	0.0	.	21	.	.	Atlas-SNP
HSF2	3298	hgsc.bcm.edu	hg19	6	122744789	122744789	+	Silent	SNP	A	A	G	rs201391717	by1000genomes;alternate_allele	TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	HSF2	NM_004506	exon10	c.A1134G	p.L378L	CATGCTATCAGGA	.	78.0	29.0	88.0	0.0	.	43	.	A|1.000;C|0.000	Atlas-SNP
PRKAG2	51422	hgsc.bcm.edu	hg19	7	151329170	151329170	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	PRKAG2	NM_016203	exon5	c.G739T	p.E247X	CGAACTCCAGCTT	.	47.0	9.0	54.0	0.0	.	86	.	.	Atlas-SNP
DOCK5	80005	hgsc.bcm.edu	hg19	8	25240239	25240239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	DOCK5	NM_024940	exon40	c.A4076G	p.Q1359R	GGCCTCAGCCTGA	.	74.0	40.0	135.0	0.0	.	167	.	.	Atlas-SNP
ZHX1	11244	hgsc.bcm.edu	hg19	8	124266377	124266377	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	ZHX1	NM_007222	exon3	c.C1810G	p.Q604E	TGGTTTGTGCCCT	.	81.0	31.0	91.0	0.0	.	89	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79319694	79319694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	PRUNE2	NM_015225	exon8	c.A7496C	p.D2499A	CCTATGTCTCCAC	.	75.0	34.0	139.0	0.0	.	331	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113170387	113170387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	SVEP1	NM_153366	exon38	c.G7493A	p.C2498Y	TTCAGGCACTCAA	.	67.0	36.0	78.0	0.0	.	326	.	.	Atlas-SNP
REXO4	57109	hgsc.bcm.edu	hg19	9	136272184	136272184	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	REXO4	NM_020385	exon8	c.C1162T	p.Q388X	CTGCCTGGGCATC	.	26.0	17.0	40.0	0.0	.	27	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61832026	61832026	+	Silent	SNP	C	C	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	ANK3	NM_020987	exon37	c.G8613T	p.S2871S	TACATGCGAAAGT	.	83.0	36.0	84.0	0.0	.	703	.	.	Atlas-SNP
SLC5A12	159963	hgsc.bcm.edu	hg19	11	26725171	26725171	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	SLC5A12_ENST00000280467,right_upper_lobe,carcinoma,0,2	SLC5A12	NM_178498	exon6	c.T728A	p.V243E	CCTCCCACTGTGA	.	90.0	36.0	101.0	0.0	.	134	.	.	Atlas-SNP
GRM5	2915	hgsc.bcm.edu	hg19	11	88242143	88242143	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	GRM5	NM_001143831	exon9	c.A3256T	p.S1086C	CGGGGCTGGGGGC	.	133.0	45.0	160.0	0.0	.	414	.	.	Atlas-SNP
MFAP5	8076	hgsc.bcm.edu	hg19	12	8800725	8800725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	MFAP5	NM_003480	exon10	c.T484A	p.C162S	TTTCACAGGGAGG	.	286.0	99.0	267.0	0.0	.	34	.	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	hg19	12	101779827	101779827	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	UTP20	NM_014503	exon62	c.G8284C	p.E2762Q	AAGATAGAGTTCC	.	349.0	122.0	343.0	0.0	.	222	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64600832	64600832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	SYNE2	NM_182914	exon78	c.C14560A	p.L4854M	AAGGACCTGGAAA	.	130.0	54.0	143.0	0.0	.	577	.	.	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	hg19	14	80271457	80271457	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	NRXN3	NM_004796	exon16	c.A2808G	p.P936P	ACAGCCAACATCA	.	56.0	25.0	74.0	0.0	.	342	.	.	Atlas-SNP
PRPF8	10594	hgsc.bcm.edu	hg19	17	1577803	1577803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	PRPF8	NM_006445	exon21	c.G3232A	p.A1078T	CAGTGGCTATGTC	.	177.0	62.0	183.0	0.0	.	169	.	.	Atlas-SNP
SLFN11	91607	hgsc.bcm.edu	hg19	17	33680389	33680389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	SLFN11	NM_152270	exon4	c.G1888A	p.V630I	CACAAACGTAGAG	.	586.0	123.0	563.0	0.0	.	112	.	.	Atlas-SNP
SLFN14	342618	hgsc.bcm.edu	hg19	17	33875988	33875988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	SLFN14	NM_001129820	exon4	c.A2009G	p.K670R	CCATATTTGCTGC	.	104.0	41.0	105.0	0.0	.	43	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2728559	2728559	+	Missense_Mutation	SNP	A	A	C	rs9961682	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	SMCHD1	NM_015295	exon23	c.A2878C	p.I960L	GACAACATAACAG	.	139.0	51.0	157.0	0.0	.	88	.	A|0.969;G|0.031	Atlas-SNP
ZSCAN30	100101467	hgsc.bcm.edu	hg19	18	32833559	32833559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	ZSCAN30	NM_001166012	exon5	c.G1340C	p.G447A	GATTTTCCACATT	.	131.0	61.0	139.0	0.0	.	34	.	.	Atlas-SNP
ZNF681	148213	hgsc.bcm.edu	hg19	19	23938228	23938228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	ZNF681	NM_138286	exon2	c.G129T	p.L43F	CTCACCCAAGAAG	.	539.0	172.0	568.0	0.0	.	76	.	.	Atlas-SNP
HSPA12B	116835	hgsc.bcm.edu	hg19	20	3723019	3723019	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	HSPA12B	NM_052970	exon4	c.G230C	p.S77T	CTTTCAGCTTTGC	.	60.0	20.0	64.0	0.0	.	43	.	.	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	hg19	20	47262565	47262565	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	PREX1	NM_020820	exon26	c.G3336A	p.S1112S	CCCACCCGAGGTG	.	35.0	18.0	43.0	0.0	.	441	.	.	Atlas-SNP
CLDN5	7122	hgsc.bcm.edu	hg19	22	19511459	19511459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	CLDN5	NM_001130861	exon1	c.G575A	p.C192Y	GCCACGCAGGTGG	.	81.0	24.0	72.0	0.0	.	22	.	.	Atlas-SNP
TAB3	257397	hgsc.bcm.edu	hg19	X	30873586	30873586	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	TAB3	NM_152787	exon6	c.A196T	p.M66L	TATTCATCCTATT	.	161.0	52.0	171.0	0.0	.	82	.	.	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	hg19	X	123197040	123197040	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	STAG2	NM_001042749	exon19	c.T1806C	p.T602T	TACCACTGGACGA	.	403.0	127.0	370.0	0.0	.	309	.	.	Atlas-SNP
IFIT3	3437	hgsc.bcm.edu	hg19	10	91099865	91099865	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	IFIT3	NM_001549	exon2	c.1452delT	p.S484fs	.	.	91.0	33.0	81.0	0.0	.	36	.	.	Atlas-INDEL
ANKRD26	22852	hgsc.bcm.edu	hg19	10	27313387	27313390	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	TCTT	TCTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	ANKRD26	NM_014915	exon28	c.4072_4075del	p.1358_1359del	.	.	269.0	103.0	295.0	0.0	.	179	.	.	Atlas-INDEL
CCAR1	55749	hgsc.bcm.edu	hg19	10	70482318	70482319	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	CCAR1	NM_018237	exon2	c.57_58insA	p.T19fs	.	.	98.0	34.0	69.0	0.0	.	118	.	.	Atlas-INDEL
NOS3	4846	hgsc.bcm.edu	hg19	7	150710398	150710405	+	Frame_Shift_Del	DEL	GAACGCCC	GAACGCCC	-	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	GAACGCCC	GAACGCCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	NOS3	NM_000603	exon25	c.3185_3192del	p.1062_1064del	.	.	52.0	15.0	70.0	0.0	.	131	.	.	Atlas-INDEL
ATP2A2	488	hgsc.bcm.edu	hg19	12	110782702	110782716	+	In_Frame_Del	DEL	GCTGCTACCGTGGGT	GCTGCTACCGTGGGT	-	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	GCTGCTACCGTGGGT	GCTGCTACCGTGGGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	ATP2A2	NM_170665	exon17	c.2532_2546del	p.844_849del	.	.	82.0	26.0	120.0	0.0	.	78	.	.	Atlas-INDEL
SUPT20HL2	170067	hgsc.bcm.edu	hg19	X	24329899	24329900	+	In_Frame_Ins	INS	-	-	AGCAGC	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	.	NM_001136233	exon1	c.1534_1535insGCTGCT	p.A512delinsAAA	.	.	300.0	30.0	295.0	0.0	.	.	.	.	Atlas-INDEL
CASS4	57091	hgsc.bcm.edu	hg19	20	55025670	55025670	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ZP-A9D0-01A-11D-A36X-10	TCGA-ZP-A9D0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b293a3fc-fa50-456a-a8cc-42ede95b381c	67df7979-ba2c-424e-b4f2-bffcd8828c05	.	CASS4	NM_001164115	exon4	c.576delG	p.Q192fs	.	.	108.0	42.0	123.0	0.0	.	121	.	.	Atlas-INDEL