Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PLEKHO1	51177	hgsc.bcm.edu	hg19	1	150131451	150131451	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	PLEKHO1	NM_016274	exon6	c.G963A	p.E321E	TCAGGAGCTTCTG	.	313.0	16.0	279.0	0.0	.	37	.	.	Atlas-SNP
CCDC19	25790	hgsc.bcm.edu	hg19	1	159847189	159847189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	CCDC19	NM_012337	exon9	c.G1108A	p.A370T	AGCGTGCGATCTC	.	154.0	33.0	146.0	0.0	.	79	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	85039487	85039487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	DNAH6	NM_001370	exon73	c.A11762G	p.K3921R	TCAACAAAGCCAT	.	147.0	62.0	137.0	0.0	.	194	.	.	Atlas-SNP
GPAT2	150763	hgsc.bcm.edu	hg19	2	96690055	96690055	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	GPAT2	NM_207328	exon16	c.G1700C	p.R567T	GGCACTCTGCCTG	.	98.0	6.0	85.0	0.0	.	46	.	.	Atlas-SNP
GALNT13	114805	hgsc.bcm.edu	hg19	2	155295175	155295175	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	GALNT13	NM_052917	exon12	c.A1467G	p.G489G	CAATGGACCTGTA	.	87.0	35.0	92.0	0.0	.	170	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179399862	179399862	+	Missense_Mutation	SNP	C	C	T	rs376403708		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	TTN	NM_001267550	exon358	c.G101480A	p.R33827H	TCACCACGCCCAA	.	65.0	22.0	62.0	0.0	.	18412	.	.	Atlas-SNP
FSIP2	401024	hgsc.bcm.edu	hg19	2	186672932	186672932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	FSIP2	NM_173651	exon17	c.C19166T	p.P6389L	TTCAACCTCAAGT	.	326.0	140.0	347.0	0.0	.	251	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196619175	196619175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	DNAH7	NM_018897	exon63	c.T11650C	p.F3884L	TCAGGAAGGCTTG	.	157.0	65.0	138.0	0.0	.	512	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210698727	210698727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	UNC80	NM_032504	exon17	c.G2777T	p.G926V	AACAGGGACTGTA	.	115.0	51.0	115.0	0.0	.	280	.	.	Atlas-SNP
MFF	56947	hgsc.bcm.edu	hg19	2	228194472	228194472	+	Missense_Mutation	SNP	G	G	T	rs145010660	bycluster;by1000genomes;alternate_allele	TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	MFF	NM_020194	exon3	c.G11T	p.G4V	GTAAAGGAACAAG	.	283.0	98.0	268.0	0.0	.	48	.	G|0.999;C|0.001	Atlas-SNP
ANKMY1	51281	hgsc.bcm.edu	hg19	2	241421602	241421602	+	Silent	SNP	C	C	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	ANKMY1	NM_016552	exon15	c.G2616C	p.G872G	TTACTGCCCCTGC	.	67.0	16.0	86.0	0.0	.	112	.	.	Atlas-SNP
GOLGA4	2803	hgsc.bcm.edu	hg19	3	37340443	37340443	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	GOLGA4	NM_001172713	exon9	c.T1000C	p.L334L	ACACTATTAACTA	.	449.0	172.0	463.0	0.0	.	173	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266107	41266107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.T104G	p.I35S	CTGGAATCCATTC	.	126.0	51.0	183.0	0.0	.	4904	.	.	Atlas-SNP
B4GALT4	8702	hgsc.bcm.edu	hg19	3	118948707	118948707	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	B4GALT4	NM_212543	exon4	c.G240A	p.V80V	AGGAGACACAGAA	.	50.0	21.0	60.0	0.0	.	30	.	.	Atlas-SNP
HGD	3081	hgsc.bcm.edu	hg19	3	120389301	120389301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	HGD	NM_000187	exon4	c.G255T	p.W85C	TTCATCCCAGTTG	.	120.0	50.0	123.0	0.0	.	65	.	.	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121258426	121258426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	POLQ	NM_199420	exon4	c.A485G	p.Q162R	ACTTCCTGAAACA	.	214.0	83.0	238.0	0.0	.	273	.	.	Atlas-SNP
KCTD8	386617	hgsc.bcm.edu	hg19	4	44449630	44449630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	KCTD8	NM_198353	exon1	c.A911G	p.Q304R	CGGTACTGGTTGA	.	66.0	38.0	89.0	0.0	.	96	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55564533	55564533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	KIT	NM_000222	exon3	c.C421T	p.P141S	ACAGACCCAGAAG	.	101.0	31.0	136.0	0.0	.	7396	.	.	Atlas-SNP
SLC4A4	8671	hgsc.bcm.edu	hg19	4	72205022	72205022	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	SLC4A4	NM_003759	exon1	c.C57T	p.A19A	AAGAGCCCGGAGC	.	156.0	60.0	179.0	0.0	.	269	.	.	Atlas-SNP
HHIP	64399	hgsc.bcm.edu	hg19	4	145580921	145580921	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	HHIP	NM_022475	exon4	c.T762C	p.L254L	GATACTTACCCCT	.	167.0	66.0	197.0	0.0	.	100	.	.	Atlas-SNP
DDX60	55601	hgsc.bcm.edu	hg19	4	169209405	169209405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	DDX60	NM_017631	exon9	c.A1103G	p.N368S	ATTAAATTCAGAT	.	669.0	256.0	738.0	1.0	.	304	.	.	Atlas-SNP
BRD9	65980	hgsc.bcm.edu	hg19	5	892720	892720	+	Splice_Site	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	BRD9	NM_023924	exon2	c.52+1G>A	.	GCCTCACCCTCGT	.	198.0	8.0	89.0	0.0	.	113	.	.	Atlas-SNP
TRIP13	9319	hgsc.bcm.edu	hg19	5	912081	912081	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	TRIP13	NM_004237	exon10	c.C990T	p.I330I	CAAAATCTACCTC	.	200.0	25.0	99.0	0.0	.	41	.	.	Atlas-SNP
TERT	7015	hgsc.bcm.edu	hg19	5	1294294	1294294	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	TERT	NM_001193376	exon2	c.A707C	p.K236T	GGCCTCTTGGGCA	.	743.0	544.0	338.0	2.0	.	2594	.	.	Atlas-SNP
OSMR	9180	hgsc.bcm.edu	hg19	5	38921880	38921880	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	OSMR	NM_003999	exon12	c.C1749T	p.S583S	CACAAGCACAGTC	.	155.0	75.0	175.0	0.0	.	133	.	.	Atlas-SNP
MRPS30	10884	hgsc.bcm.edu	hg19	5	44809645	44809645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	MRPS30	NM_016640	exon1	c.C581T	p.A194V	ACCCGGCCCTGGC	.	120.0	52.0	125.0	0.0	.	90	.	.	Atlas-SNP
GZMK	3003	hgsc.bcm.edu	hg19	5	54320628	54320628	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	GZMK	NM_002104	exon2	c.C205T	p.Q69X	CACTGCCAATATC	.	86.0	27.0	109.0	0.0	.	39	.	.	Atlas-SNP
ANKHD1	54882	hgsc.bcm.edu	hg19	5	139908468	139908468	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	ANKHD1	NM_017747	exon29	c.G5937A	p.V1979V	TTCTGTGACAAGC	.	27.0	22.0	49.0	0.0	.	233	.	.	Atlas-SNP
HAVCR1	26762	hgsc.bcm.edu	hg19	5	156482260	156482260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	HAVCR1	NM_001099414	exon3	c.G331A	p.G111R	ACCACCCACGGTG	.	94.0	29.0	118.0	0.0	.	84	.	.	Atlas-SNP
FAM184A	79632	hgsc.bcm.edu	hg19	6	119297186	119297186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	FAM184A	NM_024581	exon12	c.C2479T	p.H827Y	GTTGATGGTTGAG	.	46.0	15.0	46.0	0.0	.	109	.	.	Atlas-SNP
FUT10	84750	hgsc.bcm.edu	hg19	8	33318937	33318937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	FUT10	NM_032664	exon2	c.T34C	p.S12P	GGCAAGATGCCAA	.	23.0	15.0	57.0	0.0	.	62	.	.	Atlas-SNP
RB1CC1	9821	hgsc.bcm.edu	hg19	8	53573155	53573155	+	Splice_Site	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	RB1CC1	NM_014781	exon13	c.1689+1G>A	.	TACATACACAAAA	.	294.0	205.0	515.0	0.0	.	163	.	.	Atlas-SNP
FOCAD	54914	hgsc.bcm.edu	hg19	9	20986401	20986401	+	Missense_Mutation	SNP	G	G	T	rs376770371		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	.	NM_017794	exon42	c.G4843T	p.V1615L	AAAGAGGTGTTGG	.	42.0	15.0	47.0	0.0	.	.	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113252044	113252044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	SVEP1	NM_153366	exon9	c.C1816A	p.H606N	CTGGATGAACGTG	.	132.0	39.0	121.0	0.0	.	326	.	.	Atlas-SNP
DBC1	1620	hgsc.bcm.edu	hg19	9	121929597	121929597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	DBC1,brain,glioma,0,2	DBC1	NM_014618	exon8	c.G2051A	p.G684D	AACTGGCCGCCCT	.	163.0	8.0	151.0	0.0	.	194	.	.	Atlas-SNP
MEGF9	1955	hgsc.bcm.edu	hg19	9	123370235	123370235	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	MEGF9	NM_001080497	exon5	c.C1141G	p.P381A	AGTTCGGGCCTAT	.	131.0	44.0	129.0	0.0	.	33	.	.	Atlas-SNP
STRBP	55342	hgsc.bcm.edu	hg19	9	125920368	125920368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	STRBP	NM_018387	exon11	c.A968G	p.Y323C	ACTTTGTAAATCT	.	68.0	21.0	85.0	0.0	.	73	.	.	Atlas-SNP
TOR1B	27348	hgsc.bcm.edu	hg19	9	132566402	132566402	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	TOR1B	NM_014506	exon2	c.G250C	p.E84Q	GCCACGGAAGTGA	.	109.0	45.0	97.0	0.0	.	20	.	.	Atlas-SNP
RET	5979	hgsc.bcm.edu	hg19	10	43609005	43609005	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	RET	NM_020630	exon10	c.G1761A	p.R587R	CTCAGGGGGCAGC	.	35.0	19.0	22.0	0.0	.	916	.	.	Atlas-SNP
TIAL1	7073	hgsc.bcm.edu	hg19	10	121339462	121339462	+	Silent	SNP	A	A	C	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	TIAL1	NM_001033925	exon6	c.T483G	p.S161S	ATAAAAAGATACA	.	130.0	40.0	144.0	0.0	.	47	.	.	Atlas-SNP
SIGIRR	59307	hgsc.bcm.edu	hg19	11	406869	406869	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	SIGIRR	NM_001135053	exon8	c.T853A	p.L285M	GCAGCAAGGTCAC	.	54.0	23.0	52.0	0.0	.	22	.	.	Atlas-SNP
MICAL2	9645	hgsc.bcm.edu	hg19	11	12281400	12281400	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	MICAL2	NM_014632	exon26	c.C3290G	p.S1097C	AAAGTTCTTGCGC	.	224.0	76.0	258.0	0.0	.	114	.	.	Atlas-SNP
SIK2	23235	hgsc.bcm.edu	hg19	11	111592590	111592590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	SIK2	NM_015191	exon13	c.C1981T	p.L661F	TCCACTCTCCCTG	.	45.0	15.0	52.0	0.0	.	89	.	.	Atlas-SNP
HMBS	3145	hgsc.bcm.edu	hg19	11	118963733	118963733	+	Splice_Site	SNP	T	T	C	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	HMBS	NM_001258209	exon12	c.741+2T>C	.	CCCAGGTACCAAA	.	135.0	63.0	149.0	0.0	.	27	.	.	Atlas-SNP
CLSTN3	9746	hgsc.bcm.edu	hg19	12	7293899	7293899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	CLSTN3	NM_014718	exon9	c.A1385G	p.Y462C	CACTCTATACCGA	.	155.0	65.0	178.0	0.0	.	84	.	.	Atlas-SNP
TRPC4	7223	hgsc.bcm.edu	hg19	13	38211276	38211276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	TRPC4	NM_003306	exon11	c.C2713A	p.P905T	GACCGGGAATGCT	.	95.0	45.0	102.0	0.0	.	389	.	.	Atlas-SNP
ACTC1	70	hgsc.bcm.edu	hg19	15	35084698	35084698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	ACTC1	NM_005159	exon4	c.C527A	p.A176D	ATGATGGCATGGG	.	179.0	20.0	179.0	0.0	.	75	.	.	Atlas-SNP
SPATA5L1	79029	hgsc.bcm.edu	hg19	15	45694823	45694823	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	SPATA5L1	NM_024063	exon1	c.G196C	p.D66H	CGGCGGGACGGAG	.	64.0	22.0	60.0	0.0	.	40	.	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	hg19	15	63069030	63069030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	TLN2	NM_015059	exon40	c.T5435C	p.M1812T	ACATCATGGTGAC	.	85.0	38.0	76.0	0.0	.	253	.	.	Atlas-SNP
HCN4	10021	hgsc.bcm.edu	hg19	15	73660429	73660429	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	HCN4	NM_005477	exon1	c.C183T	p.A61A	ACCCGCGGCCGCC	.	410.0	180.0	377.0	1.0	.	150	.	.	Atlas-SNP
XYLT1	64131	hgsc.bcm.edu	hg19	16	17235129	17235129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	XYLT1	NM_022166	exon7	c.G1468A	p.D490N	CGCCATCCACGGC	.	86.0	42.0	98.0	0.0	.	147	.	.	Atlas-SNP
IRX6	79190	hgsc.bcm.edu	hg19	16	55362676	55362676	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	IRX6	NM_024335	exon5	c.G786A	p.E262E	GGAAGAGGAGGAG	.	87.0	6.0	75.0	0.0	.	66	.	.	Atlas-SNP
LOC100653515	0	hgsc.bcm.edu	hg19	17	76887957	76887957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	.	NM_001243540	exon3	c.C629T	p.T210M	CGACCCGTGGCTT	.	128.0	37.0	96.0	0.0	.	.	.	.	Atlas-SNP
COLEC12	81035	hgsc.bcm.edu	hg19	18	334824	334824	+	Silent	SNP	G	G	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	COLEC12	NM_130386	exon6	c.C1734A	p.G578G	GGGGGGGCCCTTG	.	62.0	30.0	61.0	0.0	.	121	.	.	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	hg19	19	31770531	31770531	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	TSHZ3	NM_020856	exon2	c.C168G	p.C56W	GCTGGGGCAGGCC	.	42.0	12.0	49.0	0.0	.	549	.	.	Atlas-SNP
ZNF382	84911	hgsc.bcm.edu	hg19	19	37117613	37117613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	ZNF382	NM_032825	exon5	c.A814G	p.K272E	TACAACAAATATG	.	102.0	42.0	91.0	0.0	.	87	.	.	Atlas-SNP
ZNF569	148266	hgsc.bcm.edu	hg19	19	37904717	37904717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	ZNF569	NM_152484	exon6	c.G843T	p.Q281H	TGATTTCTGGCTG	.	62.0	24.0	56.0	0.0	.	101	.	.	Atlas-SNP
FBXO17	115290	hgsc.bcm.edu	hg19	19	39437164	39437164	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	FBXO17	NM_148169	exon4	c.G532C	p.V178L	GCCACACCCCTTC	.	140.0	62.0	161.0	0.0	.	42	.	.	Atlas-SNP
ZNF223	7766	hgsc.bcm.edu	hg19	19	44570689	44570689	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	ZNF223	NM_013361	exon5	c.A708G	p.Q236Q	TGAACAATGTGGG	.	94.0	45.0	107.0	0.0	.	61	.	.	Atlas-SNP
ZNF227	7770	hgsc.bcm.edu	hg19	19	44739935	44739935	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	ZNF227	NM_182490	exon6	c.T1352G	p.L451X	CACCATTAATATG	.	68.0	24.0	101.0	0.0	.	62	.	.	Atlas-SNP
HAS1	3036	hgsc.bcm.edu	hg19	19	52222514	52222514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	HAS1	NM_001523	exon2	c.G647A	p.R216H	ACCTCGCGCTTGC	.	64.0	27.0	56.0	0.0	.	61	.	.	Atlas-SNP
ZNF813	126017	hgsc.bcm.edu	hg19	19	53995222	53995222	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	ZNF813	NM_001004301	exon4	c.A1736T	p.Y579F	AACCTTACAAGTG	.	144.0	60.0	174.0	0.0	.	81	.	.	Atlas-SNP
PSMG1	8624	hgsc.bcm.edu	hg19	21	40550541	40550541	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	PSMG1	NM_003720	exon5	c.G489C	p.Q163H	AGTTATCTGCATG	.	159.0	72.0	131.0	0.0	.	11	.	.	Atlas-SNP
SCUBE1	80274	hgsc.bcm.edu	hg19	22	43634957	43634957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	SCUBE1,NS,carcinoma,0,1	SCUBE1	NM_173050	exon7	c.C731T	p.T244M	GCGCACGTCTCTG	.	124.0	44.0	153.0	0.0	.	105	.	.	Atlas-SNP
FRMPD4	9758	hgsc.bcm.edu	hg19	X	12632900	12632900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	FRMPD4	NM_014728	exon4	c.G322A	p.G108S	CCAGGTGGCCCCT	.	134.0	55.0	177.0	0.0	.	214	.	.	Atlas-SNP
ATRX	546	hgsc.bcm.edu	hg19	X	76938720	76938720	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	ATRX	NM_000489	exon9	c.T2028C	p.N676N	ATCTGAATTAGAT	.	100.0	37.0	82.0	0.0	.	833	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	5970	5970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	.	ENST00000361624	exon1	c.G67A	p.G23S	TTATTCGGCGCAT	.	127.0	10.0	67.0	0.0	.	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13289	13289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	.	ENST00000361567	exon1	c.G953A	p.G318D	CAATCGGCATCAA	.	89.0	32.0	55.0	0.0	.	.	.	.	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14459	14459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	.	ENST00000361681	exon1	c.C215T	p.A72V	GCCATCGCTGTAG	.	170.0	15.0	90.0	0.0	.	.	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15392	15392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	.	ENST00000361789	exon1	c.G646A	p.D216N	CATTCCGATAAAA	.	76.0	16.0	46.0	0.0	.	.	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28419719	28419729	+	Frame_Shift_Del	DEL	CGTGCCATTGC	CGTGCCATTGC	-	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	CGTGCCATTGC	CGTGCCATTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	HERC2	NM_004667	exon65	c.9870_9880del	p.3290_3294del	.	.	397.0	59.0	463.0	0.0	.	501	.	.	Atlas-INDEL
MIRLET7BHG	400931	hgsc.bcm.edu	hg19	22	46501636	46501636	+	RNA	DEL	C	C	-	novel		TCGA-ZP-A9D4-01A-11D-A36X-10	TCGA-ZP-A9D4-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a6d2530-b2f0-4021-988f-4a0f41cae737	e029bef5-a63c-42bb-9902-0acc5f1bb090	.	.	.	.	.	.	.	.	82.0	37.0	66.0	0.0	.	.	.	.	Atlas-INDEL