Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Genome_Change Annotation_Transcript Transcript_Strand Transcript_Exon Transcript_Position cDNA_Change Codon_Change Protein_Change Other_Transcripts Refseq_mRNA_Id Refseq_prot_Id SwissProt_acc_Id SwissProt_entry_Id Description UniProt_AApos UniProt_Region UniProt_Site UniProt_Natural_Variations UniProt_Experimental_Info GO_Biological_Process GO_Cellular_Component GO_Molecular_Function COSMIC_overlapping_mutations COSMIC_fusion_genes COSMIC_tissue_types_affected COSMIC_total_alterations_in_gene Tumorscape_Amplification_Peaks Tumorscape_Deletion_Peaks TCGAscape_Amplification_Peaks TCGAscape_Deletion_Peaks DrugBank ref_context gc_content CCLE_ONCOMAP_overlapping_mutations CCLE_ONCOMAP_total_mutations_in_gene CGC_Mutation_Type CGC_Translocation_Partner CGC_Tumor_Types_Somatic CGC_Tumor_Types_Germline CGC_Other_Diseases DNARepairGenes_Role FamilialCancerDatabase_Syndromes MUTSIG_Published_Results OREGANNO_ID OREGANNO_Values t_alt_count t_ref_count validation_alt_allele validation_method validation_status validation_tumor_sample pox qox pox_cutoff isArtifactMode oxoGCut ANKRD36C 400986 broad.mit.edu 37 2 96593016 96593016 + Missense_Mutation SNP C C A rs79307257 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:96593016C>A ENST00000456556.1 - 28 1969 c.1885G>T c.(1885-1887)Gat>Tat p.D629Y ankyrin repeat domain 36C p.D629Y(1) breast(1)|endometrium(8)|kidney(5)|lung(4) 18 GAAACAGAATCTTTCTCATCA 0.318000 4 62 0.00307968 0.00307968 1 1 0 ATP2A3 489 broad.mit.edu 37 17 3853826 3853826 + Silent SNP G G A rs77891411 byFrequency TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr17:3853826G>A ENST00000309890.7 - 7 759 c.609C>T c.(607-609)gaC>gaT p.D203D ATP2A3_ENST00000352011.3_Silent_p.D203D|ATP2A3_ENST00000397043.3_Silent_p.D203D|ATP2A3_ENST00000397035.3_Silent_p.D203D|ATP2A3_ENST00000397039.1_5'UTR|ATP2A3_ENST00000397041.3_Silent_p.D203D|ATP2A3_ENST00000359983.3_Silent_p.D203D NM_174953.2|NM_174954.2|NM_174955.2|NM_174956.2 NP_777613.1|NP_777614.1|NP_777615.1|NP_777616.1 Q93084 AT2A3_HUMAN ATPase, Ca++ transporting, ubiquitous 203 ATP biosynthetic process|platelet activation integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding breast(1)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(11)|ovary(3)|prostate(1)|skin(3)|stomach(1)|urinary_tract(1) 36 LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766) TGTTCTTCTTGTCCTGGTTCA 0.478000 5 22 0 0 1 0 0 NBPF10 100132406 broad.mit.edu 37 1 145293128 145293128 + Missense_Mutation SNP C C T rs7366463 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:145293128C>T ENST00000468030.1 + 5 985 c.649C>T c.(649-651)Cgc>Tgc p.R217C NBPF10_ENST00000369338.1_5'UTR|NBPF10_ENST00000369339.2_Intron TTACCTGGCACGCTGGCCACA 0.498000 3 28 0 0 1 0 0 SDHA 6389 broad.mit.edu 37 5 231090 231090 + Silent SNP A A C TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:231090A>C ENST00000264932.6 + 7 985 c.870A>C c.(868-870)ctA>ctC p.L290L SDHA_ENST00000510361.1_Silent_p.L242L|SDHA_ENST00000504309.1_Silent_p.L290L NM_004168.2 NP_004159.2 P31040 DHSA_HUMAN succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 290 nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle mitochondrial respiratory chain complex II electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity p.L290L(1) NS(1)|breast(1)|cervix(1)|endometrium(6)|kidney(3)|large_intestine(6)|liver(2)|lung(16)|ovary(2)|prostate(1)|upper_aerodigestive_tract(1) 40 Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113) Succinic acid(DB00139) GCCAGGACCTAGAGTTTGTTC 0.592000 Familial Paragangliomas 4 30 0 0 1 0 0 ANKRD36C 400986 broad.mit.edu 37 2 96593000 96593000 + Missense_Mutation SNP A A G rs111976783 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:96593000A>G ENST00000456556.1 - 28 1985 c.1901T>C c.(1900-1902)aTa>aCa p.I634T ankyrin repeat domain 36C p.I634T(1) breast(1)|endometrium(8)|kidney(5)|lung(4) 18 TTCTGTGGCTATATTTGAAAC 0.338000 4 62 0 0 1 0 0 LINC00854 100874261 broad.mit.edu 37 17 41382237 41382237 + RNA SNP C C A rs1060934 byFrequency TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr17:41382237C>A ENST00000433702.2 - 0 14 NR_047479.1 TGGCTCTATGCGGTACTAAAG 0.537000 8 38 0.000157383 0.000171691 1 1 0 ANKRD36C 400986 broad.mit.edu 37 2 96593025 96593025 + Missense_Mutation SNP C C T rs75189823 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:96593025C>T ENST00000456556.1 - 28 1960 c.1876G>A c.(1876-1878)Gat>Aat p.D626N ankyrin repeat domain 36C p.D626N(1) breast(1)|endometrium(8)|kidney(5)|lung(4) 18 TCTTTCTCATCACTTGTAGCC 0.318000 4 58 0 0 1 0 0 DPP10 57628 broad.mit.edu 37 2 116447279 116447279 + Missense_Mutation SNP A A T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:116447279A>T ENST00000410059.1 + 6 938 c.458A>T c.(457-459)tAt>tTt p.Y153F DPP10_ENST00000393147.2_Missense_Mutation_p.Y157F|DPP10_ENST00000488208.1_3'UTR|DPP10_ENST00000409163.1_Missense_Mutation_p.Y103F|DPP10_ENST00000310323.8_Missense_Mutation_p.Y146F NM_001178037.1|NM_020868.3 NP_001171508.1|NP_065919.2 Q8N608 DPP10_HUMAN dipeptidyl-peptidase 10 (non-functional) 153 proteolysis integral to membrane|membrane fraction serine-type peptidase activity breast(4)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(8)|large_intestine(24)|liver(2)|lung(48)|ovary(6)|prostate(1)|skin(5)|soft_tissue(1) 101 CATTATTCGTATACTGCTTCA 0.264000 5 18 0 0 1 0 0 RP5-1198O20.4 0 broad.mit.edu 37 1 44537663 44537664 + RNA INS - - G rs7412689 byFrequency TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:44537663_44537664insG ENST00000434244.1 + 0 930 TGTTTTTTTTTGGGGGGGGACG 0.540 3 4 --- --- --- --- MGC27382 149047 broad.mit.edu 37 1 78716740 78716741 + RNA INS - - GAGT TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:78716740_78716741insGAGT ENST00000436742.1 + 0 958 agagagagagagagtgtgtgtg 0.441 4 4 --- --- --- --- LOC101927412 101927412 broad.mit.edu 37 1 81027021 81027021 + RNA DEL G G - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:81027021delG ENST00000443104.1 + 0 236 RP11-115A15.1_ENST00000437080.1_lincRNA ttctgctcctgggaagataag 0.383 2 4 --- --- --- --- GSTM5 2949 broad.mit.edu 37 1 110269977 110269978 + RNA INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:110269977_110269978insG ENST00000431955.1 + 0 249 aagggagttttggggggggcag 0.505 2 4 --- --- --- --- RP5-965F6.2 0 broad.mit.edu 37 1 112826990 112826991 + RNA INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:112826990_112826991insG ENST00000427290.1 - 0 167 AGAAAAAGGAAGGGGGGAAAGG 0.470 2 4 --- --- --- --- LOC101927648 101927648 broad.mit.edu 37 1 143418479 143418480 + RNA INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:143418479_143418480insG ENST00000423249.1 - 0 59 gcctatttagtggggggtggtc 0.525 3 5 --- --- --- --- SEC22B 9554 broad.mit.edu 37 1 145107771 145107774 + RNA DEL AAAT AAAT - rs3977178 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:145107771_145107774delAAAT ENST00000453618.1 + 0 512 O75396 SC22B_HUMAN SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) ER to Golgi vesicle-mediated transport|protein transport endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|melanosome protein binding agcaaaaaacaaataaccccattt 0.309 4 8 --- --- --- --- LOC101928009 101928009 broad.mit.edu 37 1 153148532 153148533 + RNA INS - - A rs112027836 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:153148532_153148533insA ENST00000427145.1 + 0 128 aactccatctcaaaaaaaaaaa 0.480 2 4 --- --- --- --- LINC00970 101978719 broad.mit.edu 37 1 168928386 168928386 + RNA DEL A A - rs66947140 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:168928386delA ENST00000366408.3 - 0 209 GATTAAGAATAAGACTATTTT 0.393 3 4 --- --- --- --- LOC101928650 101928650 broad.mit.edu 37 1 170451963 170451963 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:170451963delT ENST00000416416.1 - 0 113 RP11-576I22.2_ENST00000456083.1_RNA|RP11-576I22.2_ENST00000446102.1_RNA GTATTGGATCTTTTTTGCTCC 0.343 2 4 --- --- --- --- RP1-15D23.2 0 broad.mit.edu 37 1 173022609 173022610 + RNA INS - - A rs59791684 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:173022609_173022610insA ENST00000432694.1 + 0 656 gactccgtctcaaaaaaaaaaa 0.475 2 4 --- --- --- --- PAPPA2 60676 broad.mit.edu 37 1 176563963 176563964 + Frame_Shift_Ins INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:176563963_176563964insG ENST00000367662.3 + 3 2387_2388 c.1223_1224insG c.(1222-1224)cggfs p.R408fs PAPPA2_ENST00000367661.3_Frame_Shift_Ins_p.R408fs NM_020318.2 NP_064714.2 Q9BXP8 PAPP2_HUMAN pappalysin 2 408 cell differentiation|proteolysis|regulation of cell growth extracellular region|intracellular|membrane metalloendopeptidase activity|zinc ion binding p.L408fs*49(2)|p.L408L(2) NS(3)|breast(3)|central_nervous_system(7)|cervix(5)|endometrium(15)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(19)|lung(136)|ovary(7)|pancreas(1)|prostate(4)|skin(10)|upper_aerodigestive_tract(8)|urinary_tract(1) 226 TCTTTGCTCCTGGGGGGAGACA 0.574 7 283 --- --- --- --- RP1-35C21.2 0 broad.mit.edu 37 1 177434194 177434194 + RNA DEL A A - rs145781148 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:177434194delA ENST00000438575.1 - 0 296 GTCCAGTAAGAAAAAAAAAAC 0.408 2 4 --- --- --- --- LINC01344 400799 broad.mit.edu 37 1 182222056 182222057 + RNA DEL AA AA - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:182222056_182222057delAA ENST00000449842.1 - 0 410 gaggggaaataaagagaagatg 0.347 2 4 --- --- --- --- LINC01036 104169671 broad.mit.edu 37 1 187272725 187272726 + RNA INS - - TTCT rs147441972 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:187272725_187272726insTTCT ENST00000458683.1 + 0 179 ttctttctttcttctttctttc 0.327 3 3 --- --- --- --- LINC01031 101929184 broad.mit.edu 37 1 193277759 193277760 + RNA INS - - TG TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:193277759_193277760insTG ENST00000420807.1 + 0 194 ctctctctctctctgtgtgtgt 0.421 4 4 --- --- --- --- PROX1-AS1 100505832 broad.mit.edu 37 1 214155398 214155399 + RNA INS - - AAA rs12403994 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:214155398_214155399insAAA ENST00000598091.1 - 0 51 PROX1-AS1_ENST00000451396.2_RNA acaacaacaacaaaacacccct 0.495 3 4 --- --- --- --- RP11-400N13.1 0 broad.mit.edu 37 1 222388381 222388381 + RNA DEL G G - rs11326385 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:222388381delG ENST00000416510.1 - 0 278 TCCAGGCCAAGGCAGCAGAGT 0.468 4 9 --- --- --- --- RP4-781K5.7 0 broad.mit.edu 37 1 234848299 234848299 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:234848299delA ENST00000422414.1 + 0 51 ctcaaaaaacaaaaaaaaaaa 0.398 2 4 --- --- --- --- RP11-261C10.1 0 broad.mit.edu 37 1 243169324 243169326 + RNA DEL AGG AGG - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr1:243169324_243169326delAGG ENST00000427176.1 - 0 612_614 AAAGGTATGAAGGAGAAGATGGA 0.463 5 11 --- --- --- --- LINC01248 102723818 broad.mit.edu 37 2 5779833 5779834 + RNA INS - - A rs6720176 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:5779833_5779834insA ENST00000453678.1 - 0 331 AC107057.2_ENST00000458264.1_RNA aaaaaCCAAACAAAAAAAAAAC 0.416 3 4 --- --- --- --- LINC01248 102723818 broad.mit.edu 37 2 5782974 5782974 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:5782974delT ENST00000453678.1 - 0 331 AC107057.2_ENST00000458264.1_RNA tacttacaacttttttttttg 0.333 2 4 --- --- --- --- LINC00299 339789 broad.mit.edu 37 2 8436846 8436846 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:8436846delA ENST00000442956.1 - 0 965 tttcctttataaattacccag 0.433 2 4 --- --- --- --- RP11-734K21.4 0 broad.mit.edu 37 2 9285127 9285128 + RNA DEL AC AC - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:9285127_9285128delAC ENST00000474561.1 + 0 362 tccattcacaacacacacacac 0.475 5 3 --- --- --- --- AC010145.4 0 broad.mit.edu 37 2 16145372 16145373 + RNA INS - - CTTCTTCTC rs11690198 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:16145372_16145373insCTTCTTCTC ENST00000422415.2 - 0 152 tcttcctccttcttcttctcct 0.574 3 4 --- --- --- --- AC068490.2 0 broad.mit.edu 37 2 22210459 22210459 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:22210459delA ENST00000450551.1 - 0 200 GTTGAAATGGAAATGAAGCAA 0.358 2 4 --- --- --- --- AC068490.2 0 broad.mit.edu 37 2 22611689 22611691 + RNA DEL CAA CAA - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:22611689_22611691delCAA ENST00000450551.1 - 0 70 AC096570.2_ENST00000419013.1_lincRNA gggactcaatcaagatggtgttc 0.438 4 3 --- --- --- --- LINC01317 104355287 broad.mit.edu 37 2 34306793 34306804 + RNA DEL TGTGTGTGTGTG TGTGTGTGTGTG - rs71947168 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:34306793_34306804delTGTGTGTGTGTG ENST00000366209.2 + 0 389 tcatgctgtatgtgtgtgtgtgtgtgtgtgtg 0.377 4 6 --- --- --- --- LOC728730 728730 broad.mit.edu 37 2 39687125 39687126 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:39687125_39687126insA ENST00000449569.1 + 0 282 AC007246.3_ENST00000443038.1_RNA|AC007246.3_ENST00000426083.1_RNA|AC007246.3_ENST00000422128.1_RNA|AC007246.3_ENST00000446698.1_RNA|AC007246.3_ENST00000445520.1_RNA NR_037875.1 ataaagctaaCAAAAaaaaagt 0.267 2 4 --- --- --- --- LOC728730 728730 broad.mit.edu 37 2 39702234 39702235 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:39702234_39702235insA ENST00000449569.1 + 0 282 AC007246.3_ENST00000443038.1_RNA|AC007246.3_ENST00000426083.1_RNA|AC007246.3_ENST00000422128.1_RNA|AC007246.3_ENST00000446698.1_RNA NR_037875.1 gactccatctgaaaaaaaaaaa 0.455 3 4 --- --- --- --- SLC8A1-AS1 100128590 broad.mit.edu 37 2 40128458 40128461 + RNA DEL TTTC TTTC - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:40128458_40128461delTTTC ENST00000599740.1 + 0 73 TTACAGTTTATTTCTTTCTATTTC 0.328 3 3 --- --- --- --- SLC8A1-AS1 100128590 broad.mit.edu 37 2 40142531 40142531 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:40142531delA ENST00000599740.1 + 0 73 gtattgctggatcataagata 0.353 2 4 --- --- --- --- SLC8A1-AS1 100128590 broad.mit.edu 37 2 40310767 40310767 + RNA DEL T T - rs58937996 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:40310767delT ENST00000599268.1 + 0 509 SLC8A1-AS1_ENST00000418854.1_RNA|SLC8A1-AS1_ENST00000597385.1_RNA|SLC8A1-AS1_ENST00000599740.1_RNA|SLC8A1-AS1_ENST00000439606.1_RNA|SLC8A1-AS1_ENST00000601679.1_RNA cccctctgtcttttttttttt 0.328 3 3 --- --- --- --- AC016735.1 0 broad.mit.edu 37 2 43229853 43229854 + RNA INS - - C TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:43229853_43229854insC ENST00000457457.2 - 0 111 TTATTTTTCTTCCCCCTCAAAC 0.347 2 4 --- --- --- --- AC079807.4 0 broad.mit.edu 37 2 48325184 48325185 + RNA INS - - T rs112073974 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:48325184_48325185insT ENST00000447571.1 - 0 240 p.0?(2) gtttcactatcttttttttttg 0.475 2 4 --- --- --- --- LINC01122 400955 broad.mit.edu 37 2 58914449 58914449 + RNA DEL C C - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:58914449delC ENST00000452840.1 + 0 257 TTGAAATCATCTTTCCTGTAT 0.388 4 6 --- --- --- --- RP11-444A22.1 0 broad.mit.edu 37 2 59887068 59887068 + RNA DEL G G - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:59887068delG ENST00000606382.1 - 0 236 TAATTGCTTTGGGCTACTTCA 0.458 2 4 --- --- --- --- AC023115.2 0 broad.mit.edu 37 2 67495703 67495703 + RNA DEL C C - rs10711392 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:67495703delC ENST00000452716.1 + 0 394 TCTTAGCCAGCCCCCATACAT 0.413 3 4 --- --- --- --- AC010987.5 0 broad.mit.edu 37 2 67870574 67870574 + RNA DEL G G - rs36031714 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:67870574delG ENST00000419809.1 - 0 126 GGCTGGATTTGGGAGAGGGAT 0.403 3 6 --- --- --- --- ANKRD36BP2 645784 broad.mit.edu 37 2 89075328 89075329 + RNA INS - - TG rs151056201 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:89075328_89075329insTG ENST00000393525.3 + 0 401 GCCTGCATGACTGGACAACATG 0.361 2 4 --- --- --- --- ANKRD36BP2 645784 broad.mit.edu 37 2 89075573 89075582 + RNA DEL GGTCCTATTT GGTCCTATTT - rs5832741 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:89075573_89075582delGGTCCTATTT ENST00000393525.3 + 0 401 ATCCTTCTGGGGTCCTATTTGGTCCTTTCG 0.386 2 4 --- --- --- --- ANKRD36C 400986 broad.mit.edu 37 2 96525717 96525718 + Frame_Shift_Ins INS - - T rs77057279 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:96525717_96525718insT ENST00000456556.1 - 61 3871_3872 c.3787_3788insA c.(3787-3789)gaafs p.E1263fs ANKRD36C_ENST00000420871.2_Frame_Shift_Ins_p.E514fs|ANKRD36C_ENST00000419039.2_Frame_Shift_Ins_p.E290fs ankyrin repeat domain 36C breast(1)|endometrium(8)|kidney(5)|lung(4) 18 CTTATTTTTCAGTTTTCGAATT 0.282 6 7 --- --- --- --- RP11-76I14.1 0 broad.mit.edu 37 2 104670814 104670815 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:104670814_104670815insA ENST00000412112.3 + 0 119 CTCAAAATCAGAAAAAAATTAA 0.337 2 4 --- --- --- --- LOC101928173 101928173 broad.mit.edu 37 2 112262640 112262641 + RNA DEL TT TT - rs57938938 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:112262640_112262641delTT ENST00000455309.1 + 0 390 ttctgttttctttttttttttt 0.450 2 4 --- --- --- --- DARS-AS1 101928243 broad.mit.edu 37 2 136750940 136750941 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:136750940_136750941insA ENST00000419808.1 + 0 341 AC093391.2_ENST00000438432.1_RNA|AC093391.2_ENST00000446492.1_RNA agaggcctcggaaaaaaaatca 0.436 2 4 --- --- --- --- TEX41 401014 broad.mit.edu 37 2 145795035 145795036 + RNA INS - - C TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:145795035_145795036insC ENST00000445791.1 + 0 307 NR_033870.2 TTTTTTAAGCGCCCCCCACACA 0.322 2 4 --- --- --- --- AC113610.1 0 broad.mit.edu 37 2 151095645 151095645 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:151095645delA ENST00000429317.1 - 0 254 AC016682.1_ENST00000437118.1_lincRNA caatgatggtagatgacctgg 0.483 2 4 --- --- --- --- AC074363.1 0 broad.mit.edu 37 2 168291034 168291034 + RNA DEL A A - rs35876291 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:168291034delA ENST00000442316.1 + 0 164 agtactctgtaaaaaaaaaaa 0.328 7 3 --- --- --- --- AC016723.4 0 broad.mit.edu 37 2 168755802 168755802 + RNA DEL A A - rs79006051 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:168755802delA ENST00000436982.2 - 0 87 AACTCACTACAAAAAAAAAAA 0.378 2 4 --- --- --- --- TTN 7273 broad.mit.edu 37 2 179563643 179563644 + Splice_Site INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:179563643_179563644insA ENST00000589042.1 - 112 30907 c.e112-2 TTN_ENST00000591111.1_Splice_Site|TTN_ENST00000359218.5_Intron|TTN-AS1_ENST00000589830.1_RNA|TTN_ENST00000342992.6_Splice_Site|TTN-AS1_ENST00000431752.1_RNA|TTN_ENST00000460472.2_Intron|TTN_ENST00000342175.6_Intron|TTN-AS1_ENST00000592630.1_RNA|TTN-AS1_ENST00000585451.1_RNA NM_001267550.1 NP_001254479.1 Q8WZ42 TITIN_HUMAN titin ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26) 1448 OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134) TTTTGGTAACTaaaaaaaaaaa 0.277 2 4 --- --- --- --- AC007319.1 0 broad.mit.edu 37 2 187957209 187957215 + RNA DEL TTGTCAC TTGTCAC - rs5837014 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:187957209_187957215delTTGTCAC ENST00000412276.1 + 0 92 AC007319.1_ENST00000453517.1_RNA ATGATATAATTTGTCACTTAAACGAAG 0.329 4 4 --- --- --- --- AC098617.1 0 broad.mit.edu 37 2 192715201 192715202 + RNA INS - - C TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:192715201_192715202insC ENST00000424116.2 + 0 233 GATCACCAGCTCCCCCGAACAC 0.455 2 4 --- --- --- --- PTH2R 5746 broad.mit.edu 37 2 209370251 209370252 + RNA INS - - TT TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:209370251_209370252insTT ENST00000424628.1 + 0 103 tgatgttgagcttttttttttt 0.342 3 4 --- --- --- --- AC107218.3 0 broad.mit.edu 37 2 215506951 215506952 + RNA INS - - T rs143367752 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:215506951_215506952insT ENST00000437883.1 - 0 132 AC107218.3_ENST00000412896.1_RNA CTGCAACTTGGTTTTTTTCCAT 0.272 2 4 --- --- --- --- AC007563.5 0 broad.mit.edu 37 2 217635906 217635908 + RNA DEL TTT TTT - rs60108796 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:217635906_217635908delTTT ENST00000447289.1 + 0 510 TATCTGTGACttttttttttttt 0.438 2 4 --- --- --- --- AC007563.5 0 broad.mit.edu 37 2 217855358 217855359 + RNA INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:217855358_217855359insG ENST00000447289.1 + 0 510 AC007563.5_ENST00000607591.1_RNA TTAGAAAATTTGGGGGATAGAA 0.386 2 4 --- --- --- --- AC114765.1 0 broad.mit.edu 37 2 220991412 220991413 + RNA INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:220991412_220991413insG ENST00000432993.1 + 0 306 ACTCTGAGGTTGGGGGTATTGC 0.421 2 4 --- --- --- --- AC114765.1 0 broad.mit.edu 37 2 221274089 221274089 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:221274089delT ENST00000432993.1 + 0 427 ttcctgatgattttttttttc 0.333 2 4 --- --- --- --- AC079135.1 0 broad.mit.edu 37 2 237203500 237203501 + RNA DEL AG AG - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:237203500_237203501delAG ENST00000415226.1 + 0 482_483 TCTTTGTTTCAGAAGGTAATGA 0.510 2 4 --- --- --- --- FLJ43879 401039 broad.mit.edu 37 2 239844912 239844912 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:239844912delA ENST00000455228.1 - 0 2218 NR_034162.1 ATGTCCCTCTAAAAAGCATAA 0.547 2 4 --- --- --- --- LINC01237 101927289 broad.mit.edu 37 2 242999642 242999642 + RNA DEL T T - rs112493497 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr2:242999642delT ENST00000415434.1 + 0 310 AC093642.6_ENST00000446593.1_lincRNA CAGTGAACAATAGTCTTGCCC 0.532 3 3 --- --- --- --- AC026188.1 0 broad.mit.edu 37 3 3378038 3378038 + RNA DEL C C - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:3378038delC ENST00000455703.1 - 0 396 TGATGGATATCCATTTTATAG 0.378 2 4 --- --- --- --- AC027119.1 0 broad.mit.edu 37 3 6150999 6151000 + RNA DEL GC GC - rs58924838 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:6150999_6151000delGC ENST00000425894.1 + 0 322 gtgtgtgtgtgcgcgtgtgCGC 0.411 3 3 --- --- --- --- GRM7-AS3 101927347 broad.mit.edu 37 3 6693198 6693198 + RNA DEL T T - rs5846460 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:6693198delT ENST00000433639.1 + 0 194 GGGGCTTTCATTTTTTTTTTT 0.363 3 4 --- --- --- --- LMCD1-AS1 100288428 broad.mit.edu 37 3 8180298 8180299 + RNA DEL AA AA - rs57675650 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:8180298_8180299delAA ENST00000446281.1 - 0 514 accctgtcttaaaaaaaaaaaa 0.505 2 4 --- --- --- --- AC018359.1 0 broad.mit.edu 37 3 34550330 34550330 + RNA DEL A A - rs71070196 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:34550330delA ENST00000424786.1 + 0 570 GTagatgaagaaacagattaa 0.333 3 4 --- --- --- --- RP11-761N21.1 0 broad.mit.edu 37 3 40903006 40903006 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:40903006delA ENST00000412811.1 + 0 265 gatcccaaagaaaaaggcttt 0.328 2 4 --- --- --- --- RP11-654C22.2 0 broad.mit.edu 37 3 72555281 72555282 + RNA INS - - T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:72555281_72555282insT ENST00000478745.1 - 0 582 GATGAATGGGGTTTTTTAATGA 0.460 3 3 --- --- --- --- RP11-359D24.1 0 broad.mit.edu 37 3 81926965 81926966 + RNA DEL AC AC - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:81926965_81926966delAC ENST00000471614.1 + 0 363 acacacacagacacacacacac 0.396 3 6 --- --- --- --- RP11-343D2.11 0 broad.mit.edu 37 3 97842499 97842499 + RNA DEL A A - rs35950698 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:97842499delA ENST00000508964.1 - 0 94 gcatacacctaaaaaaaacta 0.333 6 7 --- --- --- --- MORC1 27136 broad.mit.edu 37 3 108822739 108822740 + Frame_Shift_Ins INS - - C rs142771630 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:108822739_108822740insC ENST00000232603.5 - 4 261_262 c.179_180insG c.(178-180)gttfs p.V60fs MORC1-AS1_ENST00000480826.1_RNA|MORC1_ENST00000483760.1_Frame_Shift_Ins_p.V60fs NM_014429.3 NP_055244.3 Q86VD1 MORC1_HUMAN MORC family CW-type zinc finger 1 60 cell differentiation|multicellular organismal development|spermatogenesis nucleus ATP binding|zinc ion binding breast(7)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(14)|lung(47)|ovary(3)|prostate(6)|skin(12)|upper_aerodigestive_tract(3) 105 ACAACATGAATCCCCCCTGCAG 0.376 7 344 --- --- --- --- RP11-384F7.1 0 broad.mit.edu 37 3 118105544 118105544 + RNA DEL A A - rs63067061 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:118105544delA ENST00000482142.1 - 0 232 agaggagcagaaaaaaaaaaa 0.403 3 4 --- --- --- --- RP11-649A16.1 0 broad.mit.edu 37 3 146700339 146700339 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:146700339delA ENST00000473299.1 - 0 229 gactccgtctaaaaaaaaaaa 0.433 3 5 --- --- --- --- RP11-454C18.1 0 broad.mit.edu 37 3 151356084 151356085 + RNA INS - - CTCT rs71872055 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:151356084_151356085insCTCT ENST00000492731.1 + 0 99 acacacacacacactctctctc 0.470 4 6 --- --- --- --- RP11-644C3.1 0 broad.mit.edu 37 3 176558227 176558228 + RNA INS - - T rs10711446 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:176558227_176558228insT ENST00000428516.1 - 0 198 CCTCCAGTGTATTTTTTTTTTC 0.386 4 3 --- --- --- --- LINC00578 100505566 broad.mit.edu 37 3 177176336 177176336 + RNA DEL T T - rs76150919 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:177176336delT ENST00000442937.1 + 0 190 NR_047568.1 taaagacttgtttttttctta 0.303 2 4 --- --- --- --- RP11-416O18.2 0 broad.mit.edu 37 3 181847623 181847623 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr3:181847623delA ENST00000462382.1 + 0 314 AATTTAGGGGAGGGCGAGGAG 0.473 2 4 --- --- --- --- LOC101929095 101929095 broad.mit.edu 37 4 15136584 15136584 + RNA DEL G G - rs139351497 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:15136584delG ENST00000502344.1 - 0 154 RP11-665G4.1_ENST00000513384.1_RNA tccacatggtggggggggggg 0.468 2 4 --- --- --- --- RP11-608O21.1 0 broad.mit.edu 37 4 19740618 19740619 + RNA INS - - G rs143215191 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:19740618_19740619insG ENST00000511431.1 + 0 288 CTGCCAAACACGTGTGTGCATG 0.436 4 5 --- --- --- --- RP11-123O22.1 0 broad.mit.edu 37 4 28483190 28483190 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:28483190delA ENST00000509416.1 + 0 402 TGAAAGTATTAATCCATACAA 0.348 2 4 --- --- --- --- RASGEF1B 153020 broad.mit.edu 37 4 82569919 82569920 + RNA INS - - GT rs5859793 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:82569919_82569920insGT ENST00000510780.1 - 0 390 GTGGAATTtgcgtgtgtgtgtg 0.446 3 5 --- --- --- --- RASGEF1B 153020 broad.mit.edu 37 4 82604519 82604520 + RNA INS - - GTTT rs140402965 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:82604519_82604520insGTTT ENST00000510780.1 - 0 390 tgttgtgtgtggttttttgttg 0.366 3 3 --- --- --- --- LOC101929468 101929468 broad.mit.edu 37 4 105480679 105480680 + RNA INS - - AT rs143329842 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:105480679_105480680insAT ENST00000500179.1 + 0 96 AC004063.1_ENST00000508358.1_lincRNA AAACTCATAAAATATGAAAAGT 0.342 2 4 --- --- --- --- LOC101929468 101929468 broad.mit.edu 37 4 105556081 105556083 + RNA DEL AAC AAC - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:105556081_105556083delAAC ENST00000500179.1 + 0 96 GGCTTGACAAaacaacaacaaca 0.384 3 5 --- --- --- --- RP11-775H9.2 0 broad.mit.edu 37 4 137175440 137175441 + RNA INS - - C rs138719953 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:137175440_137175441insC ENST00000513332.1 - 0 279 aatacaaactgccatcagagaa 0.342 5 5 --- --- --- --- RP11-98O2.1 0 broad.mit.edu 37 4 139717366 139717367 + RNA INS - - T rs149346611 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:139717366_139717367insT ENST00000502606.1 + 0 144 TTTATCCCTTGTTTTTTTTTTT 0.292 2 4 --- --- --- --- RP11-342A1.1 0 broad.mit.edu 37 4 150069456 150069457 + RNA INS - - TGTG rs143988646 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:150069456_150069457insTGTG ENST00000504755.1 - 0 232 ATATAAATTGAtgtgtgtgtgt 0.371 2 4 --- --- --- --- RP11-526A4.1 0 broad.mit.edu 37 4 150518536 150518537 + RNA INS - - T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:150518536_150518537insT ENST00000511993.1 - 0 1113 TGTTGTTGTGCtttttttcttt 0.371 2 4 --- --- --- --- LINC00290 728081 broad.mit.edu 37 4 182072546 182072547 + RNA DEL TG TG - rs72062772 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:182072546_182072547delTG ENST00000512487.1 - 0 201 NR_033918.1 tgtgtgcctctgtgtgtgtgtg 0.381 2 4 --- --- --- --- LOC90768 90768 broad.mit.edu 37 4 182900131 182900131 + RNA DEL A A - rs143851348 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:182900131delA ENST00000507869.1 - 0 748 AC108142.1_ENST00000509012.1_RNA TGCTTAAGTGAAAAAAAAAAA 0.279 2 4 --- --- --- --- LOC728339 728339 broad.mit.edu 37 4 190825682 190825683 + RNA INS - - T rs138468383 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:190825682_190825683insT ENST00000511785.1 - 0 231 AACTACTGTGATATTTTTTAGA 0.347 6 5 --- --- --- --- LOC728339 728339 broad.mit.edu 37 4 190837068 190837068 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr4:190837068delA ENST00000511785.1 - 0 231 TTTAAATTAcaagcattttgc 0.378 3 4 --- --- --- --- LINC01019 285577 broad.mit.edu 37 5 3516888 3516888 + RNA DEL T T - rs111254667 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:3516888delT ENST00000505443.1 - 0 459 NR_033898.1 CAGCAAACTGTTTTTTTTTTT 0.353 2 4 --- --- --- --- RP11-445O3.2 0 broad.mit.edu 37 5 4503036 4503036 + RNA DEL G G - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:4503036delG ENST00000507435.1 - 0 532 aaaaaaaaaaggtcattggga 0.299 3 3 --- --- --- --- RP11-122F24.1 0 broad.mit.edu 37 5 6958009 6958011 + RNA DEL AAA AAA - rs59852168 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:6958009_6958011delAAA ENST00000512838.1 + 0 69 caggataaagaaaatgtggcaca 0.374 4 9 --- --- --- --- CTD-2215L10.1 0 broad.mit.edu 37 5 9017945 9017946 + RNA INS - - T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:9017945_9017946insT ENST00000506519.1 + 0 121 TTGGACTGTACttttttttttt 0.470 2 4 --- --- --- --- LOC285692 285692 broad.mit.edu 37 5 9797015 9797016 + RNA INS - - C TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:9797015_9797016insC ENST00000511616.1 - 0 521 NR_027112.2 TCCTATAACTACCCCCTGCTAA 0.426 2 4 --- --- --- --- LOC646241 646241 broad.mit.edu 37 5 17861941 17861942 + RNA DEL TG TG - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:17861941_17861942delTG ENST00000514771.1 + 0 216 tgtgtgtgcatgtgtgtgtgtg 0.366 2 4 --- --- --- --- GUSBP1 728411 broad.mit.edu 37 5 21544716 21544717 + RNA DEL AT AT - rs145084669 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:21544716_21544717delAT ENST00000607545.1 + 0 314 NR_027026.1 GACCAGAACAATATAGTACAAT 0.366 3 4 --- --- --- --- GUSBP1 728411 broad.mit.edu 37 5 21547416 21547417 + RNA INS - - G rs112330227 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:21547416_21547417insG ENST00000607545.1 + 0 314 NR_027026.1 cttatttccaatatgttcacat 0.347 5 4 --- --- --- --- CTD-2118P12.1 0 broad.mit.edu 37 5 29155516 29155517 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:29155516_29155517insA ENST00000565798.2 + 0 198 AACACAGTTTCAAGGAGTTCTC 0.307 2 4 --- --- --- --- CTD-2116N24.1 0 broad.mit.edu 37 5 38053543 38053543 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:38053543delT ENST00000513039.2 + 0 233 aagggaGAGCTTATAAAATGG 0.438 2 4 --- --- --- --- LIFR-AS1 100506495 broad.mit.edu 37 5 38602600 38602601 + RNA INS - - T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:38602600_38602601insT ENST00000500733.2 + 0 2540 LIFR-AS1_ENST00000500817.2_RNA NR_037423.1|NR_103553.1 cttctcttttcttttttttttc 0.401 2 4 --- --- --- --- FGF10-AS1 101927075 broad.mit.edu 37 5 44403485 44403485 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:44403485delA ENST00000502457.1 + 0 295 aatagtggccaaaatttccgc 0.368 2 4 --- --- --- --- CTC-340D7.1 0 broad.mit.edu 37 5 68146960 68146960 + RNA DEL G G - rs59671017 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:68146960delG ENST00000503268.1 - 0 377 p.0?(1) catcatgtttgggtgcaatac 0.418 5 1 --- --- --- --- CTC-340D7.1 0 broad.mit.edu 37 5 68150132 68150133 + RNA INS - - T rs72534295 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:68150132_68150133insT ENST00000503268.1 - 0 377 p.0?(1) gggcatttaggttaattccatg 0.342 5 5 --- --- --- --- RP11-60A8.1 0 broad.mit.edu 37 5 72562818 72562829 + RNA DEL AGGGAGGGAGGG AGGGAGGGAGGG - rs60982251 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:72562818_72562829delAGGGAGGGAGGG ENST00000513379.1 + 0 328 aaaggaaggaagggagggagggagggagggag 0.486 3 3 --- --- --- --- MEF2C-AS1 101929423 broad.mit.edu 37 5 88567817 88567818 + RNA INS - - AC rs139892924 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:88567817_88567818insAC ENST00000512585.1 + 0 319 MEF2C-AS1_ENST00000514092.1_RNA AGAAGACTTGAacacacacaca 0.361 2 4 --- --- --- --- MEF2C-AS1 101929423 broad.mit.edu 37 5 88653026 88653026 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:88653026delT ENST00000514092.1 + 0 244 gatagagtgattatattaaca 0.279 2 4 --- --- --- --- CTC-529L17.1 0 broad.mit.edu 37 5 91999530 91999530 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:91999530delA ENST00000512237.1 + 0 89 tacagctgataaaatgggctg 0.413 4 2 --- --- --- --- CTD-2337A12.1 0 broad.mit.edu 37 5 95384369 95384369 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:95384369delT ENST00000511775.1 + 0 35 CTD-2337A12.1_ENST00000502645.2_RNA CTCTTCCTGATTTTTTTTTTC 0.423 2 4 --- --- --- --- LINC00492 100861468 broad.mit.edu 37 5 101918451 101918452 + RNA INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:101918451_101918452insG ENST00000504436.1 + 0 199 agaagtcgagtggggggaatga 0.436 4 5 --- --- --- --- RP11-492A10.1 0 broad.mit.edu 37 5 113976051 113976051 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:113976051delA ENST00000514115.1 - 0 331 caacaaggggaaaaaaatgta 0.289 2 4 --- --- --- --- LINC01183 728586 broad.mit.edu 37 5 127131002 127131003 + RNA DEL AC AC - rs145399757 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:127131002_127131003delAC ENST00000514853.2 + 0 278 aaaaaaaaaaaCAATTTGGTAA 0.371 3 4 --- --- --- --- CTD-2050E21.1 0 broad.mit.edu 37 5 142899421 142899421 + RNA DEL C C - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:142899421delC ENST00000340585.6 - 0 437 ttttcttcaaccaccactatc 0.289 2 4 --- --- --- --- CTC-436K13.1 0 broad.mit.edu 37 5 157608704 157608705 + RNA INS - - TCT rs35982687 byFrequency TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:157608704_157608705insTCT ENST00000522975.1 + 0 141 AAGTATATCCATCTTCTATCCA 0.386 4 5 --- --- --- --- LOC102546299 102546299 broad.mit.edu 37 5 163929800 163929801 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr5:163929800_163929801insA ENST00000486913.3 + 0 158 CTC-340A15.2_ENST00000519570.1_RNA|CTC-340A15.2_ENST00000524297.1_RNA|CTC-340A15.2_ENST00000522646.1_RNA|CTC-340A15.2_ENST00000522303.1_RNA|CTC-340A15.2_ENST00000522686.1_RNA|CTC-340A15.2_ENST00000523704.1_RNA|CTC-340A15.2_ENST00000517508.1_RNA|CTC-340A15.2_ENST00000519327.1_RNA|CTC-340A15.2_ENST00000522762.1_RNA cagaatatgacctttttttgga 0.376 2 4 --- --- --- --- RP1-209A6.1 0 broad.mit.edu 37 6 22985689 22985690 + RNA INS - - A rs78724921 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr6:22985689_22985690insA ENST00000420572.2 - 0 197 gactccatctcaaaaaaaaaaa 0.426 4 7 --- --- --- --- ZNRD1-AS1 80862 broad.mit.edu 37 6 30024686 30024687 + RNA INS - - A rs145679846 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr6:30024686_30024687insA ENST00000452229.1 - 0 3495_3496 ZNRD1-AS1_ENST00000376797.3_RNA|ZNRD1-AS1_ENST00000422224.1_RNA|ZNRD1-AS1_ENST00000420251.1_RNA|ZNRD1-AS1_ENST00000437417.1_RNA|ZNRD1-AS1_ENST00000448093.1_RNA|ZNRD1-AS1_ENST00000425604.1_RNA|ZNRD1-AS1_ENST00000421692.1_RNA|ZNRD1-AS1_ENST00000431012.1_RNA ACGAGCATTTGAAAAAAAAAAG 0.312 2 4 --- --- --- --- RUNX2 860 broad.mit.edu 37 6 45296446 45296446 + Frame_Shift_Del DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr6:45296446delA ENST00000352853.5 + 2 187 c.187delA c.(187-189)aafs p.K65fs RUNX2_ENST00000483243.1_3'UTR|RUNX2_ENST00000465038.2_5'UTR|SUPT3H_ENST00000371459.1_Intron|SUPT3H_ENST00000371460.1_Intron|SUPT3H_ENST00000306867.5_Intron|SUPT3H_ENST00000459689.1_Intron|RUNX2_ENST00000541979.1_Frame_Shift_Del_p.K65fs|RUNX2_ENST00000371438.1_5'UTR Q13950 RUNX2_HUMAN runt-related transcription factor 2 0 Poly-Gln. negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent nucleus ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity breast(2)|endometrium(2)|kidney(1)|large_intestine(5)|liver(1)|lung(18)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1) 34 GTTCTATCTGAAAAAAAAAGG 0.388 7 140 --- --- --- --- UFL1-AS1 100861530 broad.mit.edu 37 6 96918792 96918793 + RNA INS - - ACATAC rs66919588 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr6:96918792_96918793insACATAC ENST00000430796.1 - 0 110 catacacatatacatacacata 0.371 3 3 --- --- --- --- AC073316.1 0 broad.mit.edu 37 7 3337370 3337371 + RNA INS - - AGA rs79393726 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:3337370_3337371insAGA ENST00000437354.1 - 0 224 ggaggaggaggagaagaagaag 0.436 3 4 --- --- --- --- LOC101927668 101927668 broad.mit.edu 37 7 20023961 20023962 + RNA INS - - T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:20023961_20023962insT ENST00000449573.1 - 0 203 tcctgtgcccctcccccgcagt 0.535 2 4 --- --- --- --- AC092657.2 0 broad.mit.edu 37 7 46352049 46352050 + RNA INS - - G rs149834122 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:46352049_46352050insG ENST00000436266.1 + 0 49 gaaaaggaagagggggggttgg 0.416 2 4 --- --- --- --- AC004870.3 0 broad.mit.edu 37 7 47099268 47099269 + RNA INS - - T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:47099268_47099269insT ENST00000412996.1 - 0 52 cttgaatatggttttttgttgt 0.396 2 4 --- --- --- --- AC010971.1 0 broad.mit.edu 37 7 49276394 49276395 + RNA INS - - T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:49276394_49276395insT ENST00000440455.1 + 0 198 gatggataagctttttgatgtg 0.342 2 4 --- --- --- --- RP4-724E13.2 0 broad.mit.edu 37 7 50953930 50953930 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:50953930delT ENST00000420449.1 + 0 24 tgggttagcatttccaaaatt 0.318 2 4 --- --- --- --- LINC01446 401337 broad.mit.edu 37 7 53831470 53831471 + RNA INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:53831470_53831471insG ENST00000380970.2 - 0 1381 NR_038371.1 CTTTCTTTTCTGGGGGGGTTGG 0.470 3 4 --- --- --- --- RP11-368M16.3 0 broad.mit.edu 37 7 57698805 57698817 + RNA DEL GACTTATACCCAG GACTTATACCCAG - rs113395817 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:57698805_57698817delGACTTATACCCAG ENST00000605139.1 - 0 416 GGAACTTTGAGACTTATACCCAGGGCTGAGATG 0.484 4 9 --- --- --- --- RP5-945F2.3 0 broad.mit.edu 37 7 67720494 67720494 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:67720494delT ENST00000446187.1 - 0 179 ctcctcctcctttttttctcc 0.498 6 4 --- --- --- --- AC002127.4 0 broad.mit.edu 37 7 88351064 88351064 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:88351064delA ENST00000444032.1 + 0 65 tttgtgctttaaaaaattact 0.323 2 4 --- --- --- --- MTERF1 7978 broad.mit.edu 37 7 91493869 91493869 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:91493869delA ENST00000454222.1 - 0 93 accctgtctcaaaaaaaaaaa 0.398 3 3 --- --- --- --- LOC349160 349160 broad.mit.edu 37 7 136538690 136538690 + RNA DEL T T - rs11335174 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:136538690delT ENST00000439694.1 - 0 343 AC009264.1_ENST00000586239.1_RNA|AC009264.1_ENST00000597642.1_RNA|AC009264.1_ENST00000592183.1_RNA|AC009264.1_ENST00000598184.1_RNA|AC009264.1_ENST00000593789.1_RNA atttttattcttttttttttt 0.408 6 7 --- --- --- --- SSPO 23145 broad.mit.edu 37 7 149515189 149515189 + RNA DEL A A - rs112122477 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:149515189delA ENST00000378016.2 + 0 11577 A2VEC9 SSPO_HUMAN SCO-spondin cell adhesion extracellular space peptidase inhibitor activity Melanoma(164;0.165)|Ovarian(565;0.177) OV - Ovarian serous cystadenocarcinoma(82;0.00625) GACCTCGAGTAACTGCCCCAG 0.667 4 3 --- --- --- --- C7orf13 129790 broad.mit.edu 37 7 156289634 156289635 + RNA INS - - AC rs72190644 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr7:156289634_156289635insAC ENST00000447933.1 - 0 300 CACGTGTACTTacacacacaca 0.391 3 4 --- --- --- --- LOC157273 157273 broad.mit.edu 37 8 9267980 9267983 + RNA DEL AGAG AGAG - rs113597798 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:9267980_9267983delAGAG ENST00000521842.1 - 0 65 AATTCTAAACAGAGAGAGAGTGAG 0.431 4 6 --- --- --- --- RP11-624C23.1 0 broad.mit.edu 37 8 24505501 24505501 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:24505501delT ENST00000519689.1 - 0 184 AAAGCATAGCTTTAATTAATA 0.318 4 2 --- --- --- --- RP11-317N12.1 0 broad.mit.edu 37 8 33884248 33884248 + RNA DEL C C - rs34032823 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:33884248delC ENST00000523336.1 + 0 99 tgataaacttctttatctctg 0.403 3 3 --- --- --- --- RP11-317N12.1 0 broad.mit.edu 37 8 33890943 33890944 + RNA DEL TG TG - rs72093580 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:33890943_33890944delTG ENST00000523336.1 + 0 99 GGGgtgtgtttgtgtgtgtgtg 0.347 3 5 --- --- --- --- RP11-431M3.1 0 broad.mit.edu 37 8 34041113 34041113 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:34041113delT ENST00000518217.1 + 0 128 ctgatttaaatgttaatcaca 0.358 3 4 --- --- --- --- RP11-495O10.1 0 broad.mit.edu 37 8 38558636 38558637 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:38558636_38558637insA ENST00000521511.1 - 0 325 CTGGACAGACGAAAAAAACAAA 0.436 2 4 --- --- --- --- ADAM3A 1587 broad.mit.edu 37 8 39371865 39371865 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:39371865delT ENST00000490268.2 - 0 96 NR_073423.1 ACTCAGATCATTAATCATTAG 0.259 2 4 --- --- --- --- RP11-246K15.1 0 broad.mit.edu 37 8 58449735 58449736 + RNA INS - - CA rs58097252 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:58449735_58449736insCA ENST00000520370.1 + 0 92 ATGTCACAACGCACACACACAC 0.500 2 4 --- --- --- --- LOC102724623 102724623 broad.mit.edu 37 8 65252867 65252868 + RNA INS - - A rs35872282 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:65252867_65252868insA ENST00000521958.1 - 0 218 RP11-32K4.1_ENST00000523191.1_RNA aaaaaaaatttaaaaaaaaaaa 0.351 2 4 --- --- --- --- LOC102724623 102724623 broad.mit.edu 37 8 65275781 65275782 + RNA INS - - CA TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:65275781_65275782insCA ENST00000521958.1 - 0 218 RP11-32K4.1_ENST00000523191.1_RNA Ccatacacactcacacacacaa 0.421 2 4 --- --- --- --- KCNB2 9312 broad.mit.edu 37 8 73480091 73480092 + Frame_Shift_Ins INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:73480091_73480092insG ENST00000523207.1 + 2 710_711 c.122_123insG c.(121-123)gggfs p.G41fs NM_004770.2 NP_004761.2 Q92953 KCNB2_HUMAN potassium voltage-gated channel, Shab-related subfamily, member 2 41 regulation of smooth muscle contraction voltage-gated potassium channel complex delayed rectifier potassium channel activity|protein binding NS(1)|breast(4)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(20)|liver(2)|lung(31)|ovary(2)|pancreas(3)|prostate(2)|skin(8)|upper_aerodigestive_tract(4)|urinary_tract(1) 85 Breast(64;0.137) Epithelial(68;0.105) AAGATCAATGTGGGGGGCCTCA 0.564 7 617 --- --- --- --- LOC101926926 101926926 broad.mit.edu 37 8 74254435 74254438 + RNA DEL TCTA TCTA - rs5892408 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:74254435_74254438delTCTA ENST00000514599.1 - 0 246 RP11-434I12.2_ENST00000517475.1_RNA tatcggtctgtctatctatctatc 0.319 5 6 --- --- --- --- LINC01111 101926978 broad.mit.edu 37 8 77397312 77397313 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:77397312_77397313insA ENST00000518732.1 + 0 332 AAAATGCTGGGAAAAAAAAAAA 0.337 2 4 --- --- --- --- LINC01111 101926978 broad.mit.edu 37 8 77399222 77399223 + RNA DEL AT AT - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:77399222_77399223delAT ENST00000518732.1 + 0 332 TTAAAAGAAAATAGTCATCCAT 0.307 5 10 --- --- --- --- ZFHX4-AS1 100192378 broad.mit.edu 37 8 77552081 77552083 + RNA DEL TAA TAA - rs149141543 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:77552081_77552083delTAA ENST00000518143.1 - 0 434 ZFHX4-AS1_ENST00000522961.1_RNA NR_024360.1 gagaacaaactaatacaccctcc 0.379 6 3 --- --- --- --- LOC102724874 102724874 broad.mit.edu 37 8 78389520 78389521 + RNA INS - - T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:78389520_78389521insT ENST00000518706.2 + 0 151 gacaatgtaagttttttttttt 0.337 2 4 --- --- --- --- LOC101927040 101927040 broad.mit.edu 37 8 80721068 80721069 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:80721068_80721069insA ENST00000502766.2 - 0 349 gactccatttcaaaaaaaagaa 0.450 4 4 --- --- --- --- RP11-157I4.4 0 broad.mit.edu 37 8 82386872 82386872 + RNA DEL T T - rs35284601 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:82386872delT ENST00000524085.2 + 0 298 ttgtgtgtaattttttttttt 0.249 3 2 --- --- --- --- RP11-120I21.2 0 broad.mit.edu 37 8 84973066 84973066 + RNA DEL A A - rs147325124 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:84973066delA ENST00000523678.1 + 0 184 acaaacaaggaaaaaaaaaac 0.338 2 4 --- --- --- --- RP11-386D6.1 0 broad.mit.edu 37 8 87756434 87756435 + RNA DEL TG TG - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:87756434_87756435delTG ENST00000519041.1 + 0 448 ACTCTGCCTCTGTGTGTGTGTG 0.396 3 3 --- --- --- --- RP11-586K2.1 0 broad.mit.edu 37 8 89474994 89474994 + RNA DEL T T - rs111924296 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:89474994delT ENST00000521433.1 + 0 179 RP11-586K2.1_ENST00000523254.1_RNA gttttgcaaattttttttctg 0.254 2 4 --- --- --- --- RP11-586K2.1 0 broad.mit.edu 37 8 89519428 89519429 + RNA INS - - A rs149585996 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:89519428_89519429insA ENST00000521433.1 + 0 179 RP11-586K2.1_ENST00000523254.1_RNA aatggatacacaaaaaaacaga 0.257 3 3 --- --- --- --- LINC00534 100874052 broad.mit.edu 37 8 91270981 91270982 + RNA INS - - A rs150190231 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:91270981_91270982insA ENST00000523406.1 + 0 300 NR_051989.1 TTAAGAAAATGAAAAAAAAAAc 0.337 2 4 --- --- --- --- AB015752.3 0 broad.mit.edu 37 8 91581557 91581558 + RNA INS - - T rs112859468 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:91581557_91581558insT ENST00000521975.1 - 0 134 gtaagccttgctttttttttta 0.307 2 4 --- --- --- --- RP11-122C21.1 0 broad.mit.edu 37 8 92903890 92903891 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:92903890_92903891insA ENST00000518416.1 - 0 180 tgacggacttcaaaaatggcgc 0.520 2 4 --- --- --- --- LINC00535 642924 broad.mit.edu 37 8 94577099 94577100 + RNA INS - - C TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:94577099_94577100insC ENST00000501400.1 - 0 948 NR_033858.1 CTTTCGAAAAACCAAAAATGCG 0.297 2 4 --- --- --- --- C8orf37-AS1 100616530 broad.mit.edu 37 8 96457506 96457506 + RNA DEL G G - rs112601790 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:96457506delG ENST00000521905.1 + 0 281 Ctgtttttttgtttttttttt 0.453 2 4 --- --- --- --- C8orf37-AS1 100616530 broad.mit.edu 37 8 96505388 96505389 + RNA INS - - ACACAC rs5893337 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:96505388_96505389insACACAC ENST00000521905.1 + 0 281 TGGTGGCCTGTacacacacaca 0.490 4 7 --- --- --- --- KB-1991G8.1 0 broad.mit.edu 37 8 101357291 101357292 + RNA INS - - A rs35269620 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:101357291_101357292insA ENST00000519566.1 + 0 121 aaaccagatgcaaaggctctgg 0.337 2 4 --- --- --- --- KB-1930G5.4 0 broad.mit.edu 37 8 102437337 102437338 + RNA INS - - T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:102437337_102437338insT ENST00000519793.1 - 0 242 AGCCATTTCCAttttttttttt 0.446 2 4 --- --- --- --- CASC8 727677 broad.mit.edu 37 8 128441227 128441227 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:128441227delT ENST00000502082.1 - 0 1041 GATTTGAGACttttttttttt 0.473 6 5 --- --- --- --- CCDC26 137196 broad.mit.edu 37 8 130504998 130504999 + RNA INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:130504998_130504999insG ENST00000446592.3 - 0 312 tgtcagggggtggggggaaagg 0.446 3 5 --- --- --- --- LOC401478 401478 broad.mit.edu 37 8 138915689 138915689 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr8:138915689delA ENST00000518973.1 - 0 514 RP11-238K6.2_ENST00000519652.1_lincRNA TATGATGGCTAAAACCTGTCC 0.418 2 4 --- --- --- --- RP11-536O18.1 0 broad.mit.edu 37 9 13468689 13468689 + RNA DEL G G - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr9:13468689delG ENST00000428006.2 + 0 103 ACATCTCACAGGGATTTCTGC 0.383 2 4 --- --- --- --- LINC01239 441389 broad.mit.edu 37 9 22733598 22733599 + RNA INS - - T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr9:22733598_22733599insT ENST00000436786.1 + 0 524 NR_038977.1 agtcattacaattttttgagat 0.272 2 4 --- --- --- --- B4GALT1-AS1 101929639 broad.mit.edu 37 9 33175841 33175842 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr9:33175841_33175842insA ENST00000442432.1 + 0 72 RP11-326F20.5_ENST00000426270.1_RNA actatcgacacatttctcagaa 0.366 2 4 --- --- --- --- LOC440896 440896 broad.mit.edu 37 9 70940393 70940394 + RNA DEL GA GA - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr9:70940393_70940394delGA ENST00000429953.2 + 0 1559 tgatgataaggagagagtctgc 0.411 2 4 --- --- --- --- LOC101928438 101928438 broad.mit.edu 37 9 102355551 102355552 + RNA INS - - A rs77932548 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr9:102355551_102355552insA ENST00000427039.1 - 0 417 GGATCAATGGTAAAAAAAAAAA 0.277 3 3 --- --- --- --- RP11-281A20.1 0 broad.mit.edu 37 9 120612880 120612881 + RNA INS - - GT rs72048598 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr9:120612880_120612881insGT ENST00000449730.1 - 0 336 RP11-281A20.2_ENST00000421509.2_lincRNA TTTGTTTTAACgtgtgtgtgtg 0.406 2 4 --- --- --- --- RP11-543F8.2 0 broad.mit.edu 37 10 8470658 8470661 + RNA DEL AAAC AAAC - rs57064508 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr10:8470658_8470661delAAAC ENST00000413286.1 + 0 141 AGTCATGGGGaaacaaacaaacaa 0.407 2 4 --- --- --- --- RP11-168P8.5 0 broad.mit.edu 37 10 44403343 44403343 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr10:44403343delA ENST00000438454.1 - 0 34 CAACAGCCACAAAAAAATGCA 0.393 2 4 --- --- --- --- RP11-168P8.5 0 broad.mit.edu 37 10 44406743 44406744 + RNA INS - - A rs141547623 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr10:44406743_44406744insA ENST00000438454.1 - 0 34 aaataaatgtgaaaaatagtaa 0.312 5 1 --- --- --- --- LINC01515 101928913 broad.mit.edu 37 10 67366536 67366536 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr10:67366536delT ENST00000433152.3 + 0 594 TCTTCCTTCCTTGTGAAGTTA 0.363 2 4 --- --- --- --- RP11-655H13.2 0 broad.mit.edu 37 10 110559288 110559288 + RNA DEL G G - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr10:110559288delG ENST00000421481.1 + 0 69 CACCATGCCTGGTGCATAGAT 0.323 2 4 --- --- --- --- RP11-467K18.2 0 broad.mit.edu 37 11 9032774 9032775 + RNA DEL AC AC - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:9032774_9032775delAC ENST00000531592.1 + 0 382 TCCCTGCAAAacacacacacac 0.347 2 4 --- --- --- --- RP11-98J9.2 0 broad.mit.edu 37 11 13890520 13890521 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:13890520_13890521insA ENST00000530492.1 - 0 78 RP11-98J9.3_ENST00000525381.1_lincRNA CAAATAGAATGAAAAAAAACCA 0.371 2 4 --- --- --- --- RP11-396O20.2 0 broad.mit.edu 37 11 15740431 15740432 + RNA INS - - C TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:15740431_15740432insC ENST00000524613.1 - 0 187 GTTTGCCAGTTCCCCCCAATTC 0.480 2 4 --- --- --- --- RP11-159D8.1 0 broad.mit.edu 37 11 37972611 37972612 + RNA INS - - A rs57549100 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:37972611_37972612insA ENST00000532562.1 + 0 163 atcaaagaggcaaaaaaaataa 0.287 2 4 --- --- --- --- CTD-2572N17.1 0 broad.mit.edu 37 11 42264449 42264457 + RNA DEL TGATGTGTC TGATGTGTC - rs11280351 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:42264449_42264457delTGATGTGTC ENST00000527757.1 - 0 99 GGAGGAAAATTGATGTGTCTGATGTGTCT 0.411 3 3 --- --- --- --- LINC00301 283197 broad.mit.edu 37 11 60430926 60430926 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:60430926delT ENST00000320202.4 + 0 612 NR_026946.1 TTTGTTTGAATTttttttttt 0.318 2 4 --- --- --- --- LOC338694 338694 broad.mit.edu 37 11 68932163 68932165 + RNA DEL AAG AAG - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:68932163_68932165delAAG ENST00000562772.1 - 0 477 CCGTGGAGCCAAGAAGACACAGA 0.581 4 2 --- --- --- --- FLJ42102 399923 broad.mit.edu 37 11 71128520 71128532 + RNA DEL AAAAAAAAAAAAA AAAAAAAAAAAAA - rs72355858 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:71128520_71128532delAAAAAAAAAAAAA ENST00000331301.4 - 0 125 NR_038862.1 actctatctcaaaaaaaaaaaaaaaaaaaaagt 0.455 2 4 --- --- --- --- LOC101928989 101928989 broad.mit.edu 37 11 82090800 82090800 + RNA DEL T T - rs35474992 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:82090800delT ENST00000500502.1 - 0 235 tgagagtgggtaatttataaa 0.378 2 4 --- --- --- --- RP11-708B6.2 0 broad.mit.edu 37 11 109248368 109248368 + RNA DEL C C - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:109248368delC ENST00000532992.1 - 0 427 AGGTGACACTCCACAGAGGAA 0.443 2 4 --- --- --- --- LOC101928823 101928823 broad.mit.edu 37 11 112332121 112332121 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:112332121delT ENST00000528496.1 + 0 231 TGATTTTATGTTTTTTTTTTT 0.378 5 5 --- --- --- --- TMPRSS4-AS1 100526771 broad.mit.edu 37 11 117928164 117928165 + RNA INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:117928164_117928165insG ENST00000606951.1 - 0 195 TMPRSS4-AS1_ENST00000527695.1_RNA|TMPRSS4-AS1_ENST00000527329.1_RNA NR_038318.1 AGAGCCACTGTGGGGAAAGAAC 0.579 2 4 --- --- --- --- MIR100HG 399959 broad.mit.edu 37 11 121971368 121971368 + RNA DEL C C - rs3028409 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:121971368delC ENST00000531381.1 - 0 732 TAAAAAAAGGCGGGGGGGGGG 0.468 3 6 --- --- --- --- KRT18P59 399965 broad.mit.edu 37 11 124995233 124995233 + RNA DEL A A - rs61501775 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:124995233delA ENST00000534728.1 + 0 1894 AGTGGGTCAGATAGACTTCTA 0.453 6 0 --- --- --- --- AP002856.5 0 broad.mit.edu 37 11 131188563 131188564 + RNA INS - - A rs79572859 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:131188563_131188564insA ENST00000606885.1 + 0 146 agtacaataataaaaaaaaaaA 0.342 2 4 --- --- --- --- LOC283177 283177 broad.mit.edu 37 11 134356024 134356025 + RNA DEL CT CT - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr11:134356024_134356025delCT ENST00000528482.2 + 0 1894_1895 AGAAGAAAGACTCTGCTTCTTG 0.535 4 2 --- --- --- --- RP11-1038A11.3 0 broad.mit.edu 37 12 5478856 5478857 + RNA DEL AC AC - rs151255607 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:5478856_5478857delAC ENST00000537192.1 + 0 351 attgtgaataacacacacacac 0.302 2 4 --- --- --- --- RP11-871F6.3 0 broad.mit.edu 37 12 17722010 17722010 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:17722010delA ENST00000540399.1 - 0 763 ATTTATTAATAAAGAATGTCA 0.289 5 3 --- --- --- --- RP11-283G6.4 0 broad.mit.edu 37 12 26454650 26454651 + RNA INS - - T rs151152744 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:26454650_26454651insT ENST00000540392.1 - 0 130 RP11-283G6.5_ENST00000540625.1_RNA TATGTATACAAttttttttttt 0.421 4 7 --- --- --- --- DDX11-AS1 100506660 broad.mit.edu 37 12 31211622 31211622 + RNA DEL C C - rs113453661 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:31211622delC ENST00000500527.1 - 0 764 DDX11-AS1_ENST00000535870.1_RNA NR_038927.1 aaaaaaaaaaccaaaaaaaca 0.403 3 5 --- --- --- --- RP11-25I15.3 0 broad.mit.edu 37 12 43089118 43089118 + RNA DEL G G - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:43089118delG ENST00000550177.1 + 0 165 acatggagcagggatatgaca 0.493 2 4 --- --- --- --- TARBP2 6895 broad.mit.edu 37 12 53896875 53896876 + Frame_Shift_Ins INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:53896875_53896876insG ENST00000266987.2 + 3 771_772 c.288_289insG c.(286-291)aaggggfs p.KG96fs TARBP2_ENST00000456234.2_Frame_Shift_Ins_p.KG75fs|TARBP2_ENST00000549028.1_3'UTR|TARBP2_ENST00000394357.2_Frame_Shift_Ins_p.KG75fs|TARBP2_ENST00000552857.1_Intron NM_134323.1 NP_599150.1 Q15633 TRBP2_HUMAN TAR (HIV-1) RNA binding protein 2 96 DRBM 1.|Sufficient for interaction with PRKRA. miRNA loading onto RISC involved in gene silencing by miRNA|negative regulation of defense response to virus by host|negative regulation of protein kinase activity|positive regulation of viral genome replication|pre-miRNA processing|production of siRNA involved in RNA interference|regulation of transcription from RNA polymerase II promoter|regulation of translation|regulation of viral transcription|targeting of mRNA for destruction involved in RNA interference cytosol|nucleus|perinuclear region of cytoplasm|RNA-induced silencing complex double-stranded RNA binding|protein homodimerization activity|siRNA binding central_nervous_system(1)|endometrium(2)|large_intestine(4)|lung(3) 10 AACACCTCAAAGGGGGGAGCAT 0.634 2 4 --- --- --- --- LOC100507065 100507065 broad.mit.edu 37 12 65961014 65961015 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:65961014_65961015insA ENST00000546198.1 - 0 391 gaagtagagataaaaaaaaaac 0.322 2 4 --- --- --- --- RP11-588H23.3 0 broad.mit.edu 37 12 70882864 70882865 + RNA INS - - T rs34936426 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:70882864_70882865insT ENST00000548687.1 + 0 243 RP11-588H23.3_ENST00000548924.1_RNA|RP11-588H23.3_ENST00000549359.1_RNA|RP11-588H23.3_ENST00000551438.1_RNA|RP11-588H23.3_ENST00000549616.1_RNA|RP11-588H23.3_ENST00000549460.1_RNA agcaagaataattttttttttt 0.342 2 4 --- --- --- --- RP11-314D7.4 0 broad.mit.edu 37 12 73768133 73768134 + RNA DEL TC TC - rs10549441 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:73768133_73768134delTC ENST00000549058.1 - 0 132 actttttgtttctgagttttga 0.356 3 4 --- --- --- --- RP11-114H23.1 0 broad.mit.edu 37 12 76178119 76178120 + RNA INS - - A rs149087109 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:76178119_76178120insA ENST00000552856.1 - 0 295 actccagccccctccaggacac 0.441 3 3 --- --- --- --- RP11-1060G2.1 0 broad.mit.edu 37 12 94321719 94321719 + RNA DEL A A - rs71433900 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:94321719delA ENST00000550687.1 - 0 59 actctgtctcaaaaaaaaaaa 0.418 2 4 --- --- --- --- RP11-536G4.2 0 broad.mit.edu 37 12 96237229 96237229 + RNA DEL T T - rs150092518 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:96237229delT ENST00000553194.1 - 0 86 tctgtcttgattttttttttt 0.478 3 4 --- --- --- --- RP11-690J15.1 0 broad.mit.edu 37 12 98508467 98508467 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:98508467delA ENST00000548344.1 - 0 160 actccatctcaaaaaaaCACT 0.478 3 6 --- --- --- --- RP11-143E21.6 0 broad.mit.edu 37 12 130742274 130742275 + RNA INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:130742274_130742275insG ENST00000563922.1 + 0 340 CCACGGGGTTTGGGGGTGCAGC 0.520 2 4 --- --- --- --- LINC01257 116437 broad.mit.edu 37 12 131663944 131663945 + RNA INS - - TACC rs71453103 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr12:131663944_131663945insTACC ENST00000376678.2 + 0 220 NR_026670.2 gactggaacagtaccgcacatg 0.327 3 3 --- --- --- --- LINC00402 100507612 broad.mit.edu 37 13 74830826 74830837 + RNA DEL TGTGTGTGTGTG TGTGTGTGTGTG - rs72176130 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr13:74830826_74830837delTGTGTGTGTGTG ENST00000419499.1 + 0 296 GAGTAGAGCTtgtgtgtgtgtgtgtgtgtgtg 0.434 2 4 --- --- --- --- RP11-244H18.3 0 broad.mit.edu 37 14 20108142 20108142 + RNA DEL C C - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr14:20108142delC ENST00000551144.1 + 0 438 RP11-597A11.1_ENST00000548261.1_RNA ATGATGCCCACGTGAGCTGGC 0.408 3 5 --- --- --- --- RP11-116N8.1 0 broad.mit.edu 37 14 36420854 36420857 + RNA DEL CAAA CAAA - rs72006622 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr14:36420854_36420857delCAAA ENST00000550089.1 + 0 242 gactccgtctcaaacaaacaaaca 0.407 2 4 --- --- --- --- LINC00609 101101773 broad.mit.edu 37 14 36561125 36561125 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr14:36561125delA ENST00000546508.1 + 0 259 NR_073454.1 TAGCAATGCTAAAAAATGACA 0.328 2 4 --- --- --- --- RP11-99L13.1 0 broad.mit.edu 37 14 44935091 44935091 + RNA DEL T T - rs35173099 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr14:44935091delT ENST00000556472.1 - 0 231 TTTAACTCTCTTTTTTTTATT 0.269 3 6 --- --- --- --- LINC00871 100506412 broad.mit.edu 37 14 46560886 46560887 + RNA DEL AG AG - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr14:46560886_46560887delAG ENST00000556886.1 + 0 58 NR_102701.1 CACACCAAACAGAGGATGACAA 0.376 5 8 --- --- --- --- CTD-2277K2.1 0 broad.mit.edu 37 14 62373506 62373509 + RNA DEL TCCA TCCA - rs28538514 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr14:62373506_62373509delTCCA ENST00000554436.1 + 0 482 cgtccgtccgtccatccatccatc 0.525 4 5 --- --- --- --- LOC100506411 100506411 broad.mit.edu 37 14 71280446 71280447 + RNA INS - - A rs72231853 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr14:71280446_71280447insA ENST00000557691.1 + 0 336 ccctctctctcaaaaaaaaaaa 0.480 3 4 --- --- --- --- RP6-114E22.1 0 broad.mit.edu 37 14 72356762 72356763 + RNA INS - - C TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr14:72356762_72356763insC ENST00000555581.1 + 0 131 gctctctgaggcccccccagaa 0.446 2 4 --- --- --- --- RP1-240K6.3 0 broad.mit.edu 37 14 73943262 73943262 + RNA DEL C C - rs11345432 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr14:73943262delC ENST00000515412.2 + 0 486 AGGACAAGGGCCATTTCTTCT 0.463 3 3 --- --- --- --- RP11-187O7.3 0 broad.mit.edu 37 14 77143687 77143688 + RNA INS - - T rs11375966 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr14:77143687_77143688insT ENST00000554926.1 - 0 194 aacccctcgtattgcaggtggg 0.480 3 5 --- --- --- --- RP11-187O7.3 0 broad.mit.edu 37 14 77162203 77162206 + RNA DEL ATAC ATAC - rs10580851 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr14:77162203_77162206delATAC ENST00000554926.1 - 0 194 TCATATCCTTATACATACATGCCC 0.505 5 1 --- --- --- --- LOC100129345 100129345 broad.mit.edu 37 14 98110769 98110770 + RNA INS - - T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr14:98110769_98110770insT ENST00000355909.3 - 0 625 NR_033943.1 ATACAATTAGGTTTTTTGACTC 0.366 2 4 --- --- --- --- HERC2P3 283755 broad.mit.edu 37 15 20608792 20608794 + RNA DEL TTC TTC - rs71399679 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr15:20608792_20608794delTTC ENST00000428453.1 - 0 4041 central_nervous_system(1)|endometrium(11)|kidney(2)|large_intestine(1)|lung(14)|pancreas(1)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1) 35 aatttgttaattcttttgtttct 0.261 2 4 --- --- --- --- LOC101928227 101928227 broad.mit.edu 37 15 38314403 38314404 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr15:38314403_38314404insA ENST00000558081.2 + 0 155 gatgtccacacaaaaacctgca 0.386 2 4 --- --- --- --- RP11-275I4.2 0 broad.mit.edu 37 15 38968783 38968784 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr15:38968783_38968784insA ENST00000557946.1 + 0 287 caattggaaggaaaaaaaaaac 0.292 2 4 --- --- --- --- RP11-627D16.1 0 broad.mit.edu 37 15 46986711 46986713 + RNA DEL ATC ATC - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr15:46986711_46986713delATC ENST00000559148.1 + 0 335 TGAAGTCTTAATCATCTTTAAAT 0.355 3 4 --- --- --- --- RP11-648K4.2 0 broad.mit.edu 37 15 88148745 88148745 + RNA DEL A A - rs11305987 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr15:88148745delA ENST00000560439.1 - 0 80 AATGGGTTTTAAAAATTTACA 0.348 4 3 --- --- --- --- RP11-429B14.1 0 broad.mit.edu 37 15 90088314 90088325 + RNA DEL CTCCTTCTCCTC CTCCTTCTCCTC - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr15:90088314_90088325delCTCCTTCTCCTC ENST00000559041.1 + 0 47 cttcctccttctccttctcctcctccttctcc 0.443 4 7 --- --- --- --- RP11-522B15.3 0 broad.mit.edu 37 15 96918836 96918836 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr15:96918836delT ENST00000558499.1 + 0 123 ACCTGGGttcttttttttttt 0.473 2 4 --- --- --- --- RP11-420N3.2 0 broad.mit.edu 37 16 5994048 5994051 + RNA DEL ATCC ATCC - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr16:5994048_5994051delATCC ENST00000569895.1 + 0 436 gttatcatcaatccatccatccat 0.471 4 4 --- --- --- --- RP11-410D17.2 0 broad.mit.edu 37 16 58975274 58975276 + RNA DEL CTT CTT - rs148651695 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr16:58975274_58975276delCTT ENST00000500117.1 + 0 679 tctcttcctccttctaaccctcc 0.379 9 0 --- --- --- --- LA16c-444G7.1 0 broad.mit.edu 37 16 88281222 88281225 + RNA DEL TTGA TTGA - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr16:88281222_88281225delTTGA ENST00000563190.1 + 0 119 gagtgaatgtttgattgaatgagt 0.426 3 6 --- --- --- --- LA16c-444G7.1 0 broad.mit.edu 37 16 88330062 88330063 + RNA INS - - C rs113788215 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr16:88330062_88330063insC ENST00000563190.1 + 0 344 aTGCTCACCCTCCCCCCCACAC 0.505 3 5 --- --- --- --- MYO15A 51168 broad.mit.edu 37 17 18047246 18047246 + Frame_Shift_Del DEL C C - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr17:18047246delC ENST00000205890.5 + 28 6447 c.6109delC c.(6109-6111)ccfs p.P2037fs NM_016239.3 NP_057323.3 Q9UKN7 MYO15_HUMAN myosin XVA 2037 Tail. sensory perception of sound cytoplasm|myosin complex|stereocilium actin binding|ATP binding|calmodulin binding|motor activity breast(5)|central_nervous_system(2)|endometrium(17)|kidney(3)|large_intestine(16)|lung(27)|ovary(3)|pancreas(1)|prostate(6)|skin(13)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(2) 99 all_neural(463;0.228) CCAGGCTGAGCCCCGTGTCAC 0.607 2 4 --- --- --- --- RP11-260A9.6 0 broad.mit.edu 37 17 25318507 25318507 + RNA DEL C C - rs68017874 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr17:25318507delC ENST00000580686.1 - 0 189 CTCAATGAAACCCATGTAAGA 0.368 2 4 --- --- --- --- RP11-271K11.5 0 broad.mit.edu 37 17 29369546 29369547 + RNA DEL CA CA - rs150909945 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr17:29369546_29369547delCA ENST00000583112.1 - 0 628 p.?(1) cacatgcaagcacacacacaca 0.535 2 4 --- --- --- --- RP11-642M2.1 0 broad.mit.edu 37 17 33175650 33175651 + RNA DEL CA CA - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr17:33175650_33175651delCA ENST00000579327.1 - 0 253 AGCACAAAAGCACACAAAGGAA 0.475 2 4 --- --- --- --- ETV4 2118 broad.mit.edu 37 17 41643430 41643430 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr17:41643430delA ENST00000588996.1 + 0 31 cgtctcaaagaaaaaaaaaaG 0.552 3 3 --- --- --- --- RP11-166P13.3 0 broad.mit.edu 37 17 55155896 55155897 + RNA INS - - T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr17:55155896_55155897insT ENST00000576871.1 - 0 474_475 gttgtcttctgttttttttttt 0.495 3 3 --- --- --- --- LINC01482 101928104 broad.mit.edu 37 17 66628605 66628606 + RNA INS - - TG rs71144611 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr17:66628605_66628606insTG ENST00000585484.1 + 0 33 GTGTTTCACTCtgtgtgtgtgt 0.416 4 2 --- --- --- --- LINC01483 101928122 broad.mit.edu 37 17 67591224 67591224 + RNA DEL G G - rs11077451 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr17:67591224delG ENST00000433856.1 + 0 156 GGATTTTTTTGTTGTTGTTGT 0.313 2 4 --- --- --- --- KCNJ16 3773 broad.mit.edu 37 17 68070026 68070026 + RNA DEL T T - rs67672917 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr17:68070026delT ENST00000435112.1 - 0 306 TAGTCTTCAATTTTTTTTTTT 0.353 5 2 --- --- --- --- RP11-101O21.1 0 broad.mit.edu 37 17 72094993 72094994 + RNA DEL CA CA - rs145947654 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr17:72094993_72094994delCA ENST00000584003.1 - 0 360 catgcacattcacacacacaca 0.441 3 4 --- --- --- --- RP11-172F10.1 0 broad.mit.edu 37 18 4886491 4886492 + RNA INS - - C TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr18:4886491_4886492insC ENST00000584204.1 - 0 500 gcgacgccccaccccccttggc 0.574 2 4 --- --- --- --- RP11-739N10.1 0 broad.mit.edu 37 18 25098455 25098456 + RNA INS - - T rs145422082 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr18:25098455_25098456insT ENST00000584546.1 - 0 260 atgatttttgataaaagtttga 0.238 6 3 --- --- --- --- RP11-746B8.1 0 broad.mit.edu 37 18 30484474 30484475 + RNA DEL TG TG - rs34325836 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr18:30484474_30484475delTG ENST00000580366.1 + 0 27 AGTACAGGTTtgtgtgtgtgtg 0.332 3 5 --- --- --- --- LINC01478 101927921 broad.mit.edu 37 18 41995459 41995459 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr18:41995459delA ENST00000587877.1 - 0 386 aataaaaattaaaaaaaaaTA 0.294 4 5 --- --- --- --- RP11-116O18.3 0 broad.mit.edu 37 18 43283255 43283256 + RNA INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr18:43283255_43283256insG ENST00000589510.1 - 0 160 gggtctatgttggggggggtcc 0.520 3 4 --- --- --- --- LOC284294 284294 broad.mit.edu 37 18 61817701 61817702 + RNA INS - - T rs71164807 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr18:61817701_61817702insT ENST00000589376.1 + 0 200 AC100848.1_ENST00000417298.1_lincRNA NR_033881.1 ttccttcttgattttttttttt 0.337 2 4 --- --- --- --- LOC284294 284294 broad.mit.edu 37 18 61856134 61856134 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr18:61856134delT ENST00000589376.1 + 0 200 NR_033881.1 CTAGTGGTGCTTTTGTTTCCA 0.368 2 4 --- --- --- --- RP11-751H17.1 0 broad.mit.edu 37 18 74913783 74913784 + RNA DEL TC TC - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr18:74913783_74913784delTC ENST00000584843.1 + 0 209 acagcaccaatctctctccatc 0.540 2 4 --- --- --- --- RP11-176N18.2 0 broad.mit.edu 37 18 75238621 75238622 + RNA INS - - TGTGTGCA rs58608051 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr18:75238621_75238622insTGTGTGCA ENST00000583629.1 + 0 497 gtgtctctgtgcgtgtgcatgt 0.500 2 4 --- --- --- --- PRTN3 5657 broad.mit.edu 37 19 843554 843555 + Frame_Shift_Ins INS - - C TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr19:843554_843555insC ENST00000544537.2 + 1 214_215 c.32_33insC c.(31-33)gagfs p.E11fs PRTN3_ENST00000234347.5_Frame_Shift_Ins_p.E52fs P24158 PRTN3_HUMAN proteinase 3 52 collagen catabolic process|positive regulation of cell proliferation|proteolysis protein binding|serine-type endopeptidase activity lung(1)|ovary(2)|urinary_tract(1) 4 Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228) UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18) GGGAACCCGGGCAGCCACTTCT 0.713 2 4 --- --- --- --- CTC-513N18.6 0 broad.mit.edu 37 19 20617301 20617302 + RNA INS - - C rs117026781 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr19:20617301_20617302insC ENST00000598131.1 + 0 160 taggaaagaaaccccccccaca 0.416 3 6 --- --- --- --- CTC-459F4.5 0 broad.mit.edu 37 19 28367915 28367916 + RNA INS - - T TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr19:28367915_28367916insT ENST00000589471.1 - 0 118 ccttggtaaggtttttttgtta 0.366 2 4 --- --- --- --- AC007795.1 0 broad.mit.edu 37 19 29369221 29369222 + RNA INS - - A rs112645778 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr19:29369221_29369222insA ENST00000585883.1 + 0 202 CTTCTCTGCCCTTAACTTCTTT 0.510 3 3 --- --- --- --- CTC-439O9.3 0 broad.mit.edu 37 19 31698538 31698538 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr19:31698538delA ENST00000589511.1 + 0 646 ggaaacttgtaataaaaccac 0.353 2 4 --- --- --- --- FLJ26850 400710 broad.mit.edu 37 19 50567905 50567906 + RNA DEL GA GA - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr19:50567905_50567906delGA ENST00000527209.1 + 0 806 NR_027257.1 gggttgtggggagagagagaga 0.446 2 4 --- --- --- --- MGC45922 284365 broad.mit.edu 37 19 51321023 51321024 + RNA INS - - GTGT rs57958306 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr19:51321023_51321024insGTGT ENST00000326989.5 + 0 62 NR_038359.1 GTTGTGAGGGCgtgtgtgtgtg 0.515 3 3 --- --- --- --- LOC727993 727993 broad.mit.edu 37 20 1959267 1959268 + RNA DEL TG TG - rs71814909 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr20:1959267_1959268delTG ENST00000446562.1 + 0 1216 AACCTGAATAtgtgtgtgtgtg 0.411 2 4 --- --- --- --- NCOR1P1 149934 broad.mit.edu 37 20 26094301 26094301 + RNA DEL G G - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr20:26094301delG ENST00000478176.1 - 0 150 NR_003678.1 TTCATCAAAAGCAAAGACAAG 0.343 3 5 --- --- --- --- BAGE2 85319 broad.mit.edu 37 21 11069266 11069266 + RNA DEL A A - rs56865191 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr21:11069266delA ENST00000470054.1 - 0 324 B melanoma antigen family, member 2 Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723) UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247) cacaaatggcaaaaaaaaaga 0.318 3 3 --- --- --- --- BAGE2 85319 broad.mit.edu 37 21 11082289 11082290 + RNA INS - - A rs141568460 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr21:11082289_11082290insA ENST00000470054.1 - 0 324 B melanoma antigen family, member 2 Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723) UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247) cttaacatcctacacacaggac 0.465 5 9 --- --- --- --- AP000470.2 0 broad.mit.edu 37 21 25527764 25527765 + RNA DEL CT CT - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr21:25527764_25527765delCT ENST00000448063.1 - 0 411_412 cttgctctcactctctctctct 0.376 3 5 --- --- --- --- LOC339622 339622 broad.mit.edu 37 21 26318937 26318937 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr21:26318937delT ENST00000441009.1 + 0 330 AP000146.2_ENST00000441666.1_lincRNA NR_046198.3 TAACCACCTATTTTTTTTTCA 0.363 3 2 --- --- --- --- AP000233.4 0 broad.mit.edu 37 21 26641798 26641798 + RNA DEL A A - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr21:26641798delA ENST00000409758.1 - 0 89 gcataaaaagaaaaaaaaaac 0.333 2 4 --- --- --- --- CYYR1-AS1 100996571 broad.mit.edu 37 21 27791764 27791764 + RNA DEL T T - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr21:27791764delT ENST00000357401.3 + 0 186 AP001597.1_ENST00000414486.1_RNA|AP001596.6_ENST00000444306.1_RNA|AP001596.6_ENST00000429340.1_RNA|AP001596.6_ENST00000421771.1_RNA ccccaaagtcttagctcattc 0.428 2 4 --- --- --- --- AP000282.2 0 broad.mit.edu 37 21 34361313 34361314 + RNA INS - - G TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr21:34361313_34361314insG ENST00000420356.1 - 0 201 AP000282.2_ENST00000454622.1_RNA GTCATCTTAAAGGGGAGTCCCC 0.450 2 4 --- --- --- --- AC007064.24 0 broad.mit.edu 37 22 17351804 17351804 + RNA DEL G G - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr22:17351804delG ENST00000442403.1 + 0 288 CATTATCCCTGGTATAGGGCA 0.453 2 4 --- --- --- --- RP1-149A16.12 0 broad.mit.edu 37 22 32729846 32729847 + RNA DEL CA CA - TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr22:32729846_32729847delCA ENST00000446543.1 - 0 94 acacacacaccacagacaccca 0.480 2 4 --- --- --- --- ISX-AS1 101926957 broad.mit.edu 37 22 35395159 35395160 + RNA INS - - GT rs145602493 by1000genomes TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr22:35395159_35395160insGT ENST00000448318.4 - 0 986 RP1-272J12.1_ENST00000427881.1_RNA tgtgcaagtaggtgtgtgtgtg 0.337 4 3 --- --- --- --- LOC284930 284930 broad.mit.edu 37 22 48159490 48159491 + RNA INS - - A TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chr22:48159490_48159491insA ENST00000423737.1 + 0 1125 GACTGTCTTAGAAGGGGAGTCT 0.450 2 4 --- --- --- --- RP13-188A5.1 0 broad.mit.edu 37 X 56005523 56005524 + RNA DEL GA GA - rs72468280 TCGA-17-Z019-01A-01W-0746-08 TCGA-17-Z019-11A-01W-0746-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4cf515b-9c79-405e-9d44-7ec5376063e2 ed3e0a17-44af-4b91-ac37-198aed05c9c5 g.chrX:56005523_56005524delGA ENST00000452532.1 + 0 678 CATATAGGGCGAGAGAGAGAGA 0.376 2 4 --- --- --- ---