Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
ga2file	LUAD.mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt	gdac.broadinstitute.org_LUAD.Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00439:15	miRseq_Preprocess_2016012800	LUAD.miRseq_cross_mapped.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_LUAD.miRseq_Preprocess.Level_3.2016012800.0.0	yes
ga2file	LUAD.mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt	gdac.broadinstitute.org_LUAD.Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00439:15	miRseq_Preprocess_2016012800	LUAD.miRseq_RPKM.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_LUAD.miRseq_Preprocess.Level_3.2016012800.0.0	yes
ga2file	LUAD.mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt	gdac.broadinstitute.org_LUAD.Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00439:15	miRseq_Preprocess_2016012800	LUAD.miRseq_RPKM_log2.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_LUAD.miRseq_Preprocess.Level_3.2016012800.0.0	yes
ga2file	LUAD.mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt	gdac.broadinstitute.org_LUAD.Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00439:15	miRseq_Preprocess_2016012800	stdout.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_LUAD.miRseq_Preprocess.Level_3.2016012800.0.0	yes
ga2file	LUAD.mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt	gdac.broadinstitute.org_LUAD.Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00439:15	miRseq_Preprocess_2016012800	LUAD.miRseq_raw_counts.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_LUAD.miRseq_Preprocess.Level_3.2016012800.0.0	yes
ga2file	LUAD.mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt	gdac.broadinstitute.org_LUAD.Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00439:15	miRseq_Preprocess_2016012800	stderr.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_LUAD.miRseq_Preprocess.Level_3.2016012800.0.0	yes
expfile	LUAD.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt	gdac.broadinstitute.org_LUAD.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00439:15	miRseq_Preprocess_2016012800	LUAD.miRseq_cross_mapped.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_LUAD.miRseq_Preprocess.Level_3.2016012800.0.0	yes
expfile	LUAD.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt	gdac.broadinstitute.org_LUAD.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00439:15	miRseq_Preprocess_2016012800	LUAD.miRseq_RPKM.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_LUAD.miRseq_Preprocess.Level_3.2016012800.0.0	yes
expfile	LUAD.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt	gdac.broadinstitute.org_LUAD.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00439:15	miRseq_Preprocess_2016012800	LUAD.miRseq_RPKM_log2.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_LUAD.miRseq_Preprocess.Level_3.2016012800.0.0	yes
expfile	LUAD.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt	gdac.broadinstitute.org_LUAD.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00439:15	miRseq_Preprocess_2016012800	stdout.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_LUAD.miRseq_Preprocess.Level_3.2016012800.0.0	yes
expfile	LUAD.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt	gdac.broadinstitute.org_LUAD.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00439:15	miRseq_Preprocess_2016012800	LUAD.miRseq_raw_counts.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_LUAD.miRseq_Preprocess.Level_3.2016012800.0.0	yes
expfile	LUAD.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.data.txt	gdac.broadinstitute.org_LUAD.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00439:15	miRseq_Preprocess_2016012800	stderr.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_LUAD.miRseq_Preprocess.Level_3.2016012800.0.0	yes