R version 2.10.1 (2009-12-14) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_mRNA_Preprocess_Median/broadinstitute.org/cancer.genome.analysis/00374/37/get_medianExp_broad_v1.R") > result <- main("-b/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/LUSC/22230702/GDAC_MergeDataFiles_12185573/LUSC.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt", "-e/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/LUSC/22230682/GDAC_MergeDataFiles_12185549/LUSC.exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data.data.txt", "-u/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/LUSC/22230659/GDAC_MergeDataFiles_12185566/LUSC.transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data.data.txt", "-a", "-oLUSC", "-h/xchip/tcga/Tools/Nozzle/v1.current") > q(save="no")