Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context RAP1GAP2 23108 genome.wustl.edu 36 17 2876141 2876141 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2876141 2876141 RAP1GAP2 17 C C T 23 TP53 7157 genome.wustl.edu 36 17 7518284 7518284 + Missense_Mutation SNP G A A rs28934573 Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7518284 7518284 TP53 17 G A A 41 FARSA 2193 genome.wustl.edu 36 19 12902497 12902497 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 12902497 12902497 FARSA 19 G G A 39 FAR1 84188 genome.wustl.edu 36 11 13705692 13705692 + Missense_Mutation SNP A T T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 A A T T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 13705692 13705692 FAR1 11 A T T 12 NCAM2 4685 genome.wustl.edu 36 21 21574817 21574817 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21574817 21574817 NCAM2 21 G G C 41 GPR158 57512 genome.wustl.edu 36 10 25926869 25926869 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 25926869 25926869 GPR158 10 T T C 54 ANKS1A 23294 genome.wustl.edu 36 6 35093620 35093620 + Nonsense_Mutation SNP C C T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 35093620 35093620 ANKS1A 6 C C T 23 TTC3 7267 genome.wustl.edu 36 21 37418871 37418871 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37418871 37418871 TTC3 21 A A G 4 CBX7 23492 genome.wustl.edu 36 22 37859983 37859983 + Silent SNP G T T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 37859983 37859983 CBX7 22 G T T 39 PRICKLE1 144165 genome.wustl.edu 36 12 41144824 41144824 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41144824 41144824 PRICKLE1 12 G G C 35 KIAA1644 85352 genome.wustl.edu 36 22 43024013 43024013 + Silent SNP C C T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 43024013 43024013 KIAA1644 22 C C T 23 NNT 23530 genome.wustl.edu 36 5 43691842 43691842 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43691842 43691842 NNT 5 G G A 34 KRT79 338785 genome.wustl.edu 36 12 51504354 51504354 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51504354 51504354 KRT79 12 G G T 48 RB1CC1 9821 genome.wustl.edu 36 8 53749013 53749013 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 53749013 53749013 RB1CC1 8 T T C 50 PCDH15 65217 genome.wustl.edu 36 10 55286974 55286974 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55286974 55286974 PCDH15 10 G G T 36 LRIG3 121227 genome.wustl.edu 36 12 57560777 57560777 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 57560777 57560777 LRIG3 12 G G C 35 TTC9C 283237 genome.wustl.edu 36 11 62253040 62253040 + Silent SNP G G T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 62253040 62253040 TTC9C 11 G G T 40 PLEK2 26499 genome.wustl.edu 36 14 66931898 66931898 + Silent SNP G G A novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 66931898 66931898 PLEK2 14 G G A 45 NUMB 8650 genome.wustl.edu 36 14 72813133 72813133 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 72813133 72813133 NUMB 14 G G A 34 CDH13 1012 genome.wustl.edu 36 16 81808467 81808467 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 81808467 81808467 CDH13 16 G G T 35 CDH13 1012 genome.wustl.edu 36 16 81808476 81808476 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 81808476 81808476 CDH13 16 G G T 35 CADM2 253559 genome.wustl.edu 36 3 85858344 85858344 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 85858344 85858344 CADM2 3 A A G 2 VWA3B 200403 genome.wustl.edu 36 2 98233285 98233285 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 98233285 98233285 VWA3B 2 A A G 5 MFSD9 84804 genome.wustl.edu 36 2 102701787 102701787 + Missense_Mutation SNP G A A novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 102701787 102701787 MFSD9 2 G A A 38 DAO 1610 genome.wustl.edu 36 12 107805409 107805409 + Silent SNP C C T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 107805409 107805409 DAO 12 C C T 19 SOBP 55084 genome.wustl.edu 36 6 108061758 108061758 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 108061758 108061758 SOBP 6 C C A 20 CAMK2D 817 genome.wustl.edu 36 4 114600794 114600794 + Missense_Mutation SNP A A C novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 114600794 114600794 CAMK2D 4 A A C 1 MCM9 254394 genome.wustl.edu 36 6 119280502 119280502 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 119280502 119280502 MCM9 6 G G A 45 NUP188 23511 genome.wustl.edu 36 9 130770618 130770618 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 130770618 130770618 NUP188 9 G G A 36 PPP2CA 5515 genome.wustl.edu 36 5 133565562 133565562 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 133565562 133565562 PPP2CA 5 C C G 32 KIAA0649 9858 genome.wustl.edu 36 9 137519770 137519770 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 137519770 137519770 KIAA0649 9 C C T 19 PCDHB9 56127 genome.wustl.edu 36 5 140549022 140549022 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140549022 140549022 PCDHB9 5 G G A 34 CYP11B1 1584 genome.wustl.edu 36 8 143956176 143956176 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 T T T C T C Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 143956176 143956176 CYP11B1 8 T T C 53 LRBA 987 genome.wustl.edu 36 4 151612283 151612283 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 151612283 151612283 LRBA 4 A A T 8 HMCN1 83872 genome.wustl.edu 36 1 184258800 184258800 + Nonsense_Mutation SNP C C T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 184258800 184258800 HMCN1 1 C C T 31 PGAP1 80055 genome.wustl.edu 36 2 197489528 197489528 + Silent SNP T T C novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 197489528 197489528 PGAP1 2 T T C 55 FAM117B 150864 genome.wustl.edu 36 2 203338550 203338550 + Nonsense_Mutation SNP A A T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 203338550 203338550 FAM117B 2 A A T 5 SLC18A1 6570 genome.wustl.edu 36 8 20082690 20082691 + Frame_Shift_Ins INS - - T novel Unknown TCGA-04-1349-01 TCGA-04-1349-11 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 20082690 20082691 SLC18A1 8 - - T 21 PADI2 11240 genome.wustl.edu 36 1 17291556 17291556 + Missense_Mutation SNP C C T Unknown TCGA-04-1349-01 TCGA-04-1349-11 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17291556 17291556 PADI2 1 C C T 23 CYP21A2 1589 genome.wustl.edu 36 6 32114194 32114196 + In_Frame_Del DEL CTG CTG - Unknown TCGA-04-1349-01 TCGA-04-1349-11 CTG CTG CTG - CTG CTG Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 32114194 32114196 CYP21A2 6 CTG CTG - 24