Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ALPK2	115701	hgsc.bcm.edu	36	18	54397446	54397446	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	54397446	54397446	ALPK2	18	C	C	T	23
ARFGEF2	10564	hgsc.bcm.edu	36	20	47038451	47038451	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47038451	47038451	ARFGEF2	20	C	C	G	19
ARL2	402	hgsc.bcm.edu	36	11	64542704	64542704	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	64542704	64542704	ARL2	11	A	A	G	8
ATAD3B	83858	hgsc.bcm.edu	36	1	1414489	1414489	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1414489	1414489	ATAD3B	1	C	C	A	24
BAT5	7920	hgsc.bcm.edu	36	6	31777860	31777860	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	31777860	31777860	BAT5	6	C	C	T	21
BCL11A	53335	hgsc.bcm.edu	36	2	60542989	60542989	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	60542989	60542989	BCL11A	2	G	G	A	48
C19orf18	147685	hgsc.bcm.edu	36	19	63161859	63161859	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	63161859	63161859	C19orf18	19	G	G	C	36
C19orf47	126526	hgsc.bcm.edu	36	19	45533868	45533868	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	45533868	45533868	C19orf47	19	C	C	T	18
C2orf71	388939	hgsc.bcm.edu	36	2	29141430	29141431	+	In_Frame_Ins	INS	-	-	GCT	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Ins	INS	29141430	29141431	C2orf71	2	-	-	GCT	31
C6orf168	84553	hgsc.bcm.edu	36	6	99846374	99846374	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	99846374	99846374	C6orf168	6	G	G	A	40
CDC73	79577	hgsc.bcm.edu	36	1	191448182	191448182	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	191448182	191448182	CDC73	1	C	C	A	18
CHST15	51363	hgsc.bcm.edu	36	10	125788152	125788152	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	125788152	125788152	CHST15	10	C	C	T	22
DOK2	9046	hgsc.bcm.edu	36	8	21823005	21823006	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	21823005	21823006	DOK2	8	-	-	A	24
EPHA6	285220	hgsc.bcm.edu	36	3	98188958	98188958	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	98188958	98188958	EPHA6	3	G	G	C	40
ERBB2	2064	hgsc.bcm.edu	36	17	35135143	35135143	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35135143	35135143	ERBB2	17	G	G	A	38
FADS2	9415	hgsc.bcm.edu	36	11	61352599	61352600	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	61352599	61352600	FADS2	11	-	-	G	23
GTF2IRD1	9569	hgsc.bcm.edu	36	7	73643154	73643154	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	73643154	73643154	GTF2IRD1	7	C	C	T	19
IMPG2	50939	hgsc.bcm.edu	36	3	102447416	102447416	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102447416	102447416	IMPG2	3	G	G	C	33
KCTD8	386617	hgsc.bcm.edu	36	4	43871767	43871767	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43871767	43871767	KCTD8	4	G	G	A	40
KL	9365	hgsc.bcm.edu	36	13	32536043	32536043	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32536043	32536043	KL	13	G	G	A	38
KRTAP19-4	337971	hgsc.bcm.edu	36	21	30791269	30791269	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30791269	30791269	KRTAP19-4	21	G	G	T	35
MYO7B	4648	hgsc.bcm.edu	36	2	128101042	128101042	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	128101042	128101042	MYO7B	2	T	T	G	58
MYT1L	23040	hgsc.bcm.edu	36	2	1870318	1870318	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1870318	1870318	MYT1L	2	C	C	A	20
NBPF1	55672	hgsc.bcm.edu	36	1	16763950	16763952	+	In_Frame_Del	DEL	TCG	TCG	-	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	TCG	TCG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	16763950	16763952	NBPF1	1	TCG	TCG	-	62
NBPF12	440675	hgsc.bcm.edu	36	1	144929375	144929375	+	Missense_Mutation	SNP	C	C	A	rs5015286	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	144929375	144929375	NBPF12	1	C	C	A	26
NR4A2	4929	hgsc.bcm.edu	36	2	156894619	156894620	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	156894619	156894620	NR4A2	2	-	-	G	55
PDE12	201626	hgsc.bcm.edu	36	3	57517972	57517972	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	57517972	57517972	PDE12	3	A	A	T	6
PGAP1	80055	hgsc.bcm.edu	36	2	197445444	197445444	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	197445444	197445444	PGAP1	2	A	A	C	1
RGS9	8787	hgsc.bcm.edu	36	17	60651718	60651718	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	60651718	60651718	RGS9	17	G	G	A	39
RPA1	6117	hgsc.bcm.edu	36	17	1747193	1747194	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	1747193	1747194	RPA1	17	-	-	G	11
RUNX2	860	hgsc.bcm.edu	36	6	45622685	45622685	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	45622685	45622685	RUNX2	6	G	G	A	39
SEC14L3	266629	hgsc.bcm.edu	36	22	29190822	29190822	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29190822	29190822	SEC14L3	22	T	T	A	52
SLC9A8	23315	hgsc.bcm.edu	36	20	47865032	47865032	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47865032	47865032	SLC9A8	20	C	C	T	23
SNCB	6620	hgsc.bcm.edu	36	5	175980868	175980868	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	175980868	175980868	SNCB	5	C	C	T	29
SPOP	8405	hgsc.bcm.edu	36	17	45043777	45043777	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	45043777	45043777	SPOP	17	A	A	G	16
SYNE2	23224	hgsc.bcm.edu	36	14	63754929	63754929	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	63754929	63754929	SYNE2	14	G	G	C	47
TACC1	6867	hgsc.bcm.edu	36	8	38796364	38796364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	38796364	38796364	TACC1	8	G	G	A	40
TP53	7157	hgsc.bcm.edu	36	17	7518927	7518927	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7518927	7518927	TP53	17	A	A	C	6
UBE4B	10277	hgsc.bcm.edu	36	1	10153945	10153945	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10153945	10153945	UBE4B	1	C	C	T	31
YTHDC2	64848	hgsc.bcm.edu	36	5	112927646	112927646	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	112927646	112927646	YTHDC2	5	A	A	G	1
ZBTB7C	201501	hgsc.bcm.edu	36	18	43820833	43820833	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43820833	43820833	ZBTB7C	18	C	C	G	20
ZMAT3	64393	hgsc.bcm.edu	36	3	180227980	180227980	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	180227980	180227980	ZMAT3	3	G	G	A	38
ZNF235	9310	hgsc.bcm.edu	36	19	49484668	49484668	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49484668	49484668	ZNF235	19	G	G	A	38
ZNF536	9745	hgsc.bcm.edu	36	19	35717640	35717640	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01	TCGA-04-1364-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	35717640	35717640	ZNF536	19	G	G	A	38