Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ANO4	121601	hgsc.bcm.edu	36	12	100001650	100001650	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	100001650	100001650	ANO4	12	G	G	C	47
BHMT2	23743	hgsc.bcm.edu	36	5	78414808	78414808	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	78414808	78414808	BHMT2	5	C	C	T	23
C10orf113	387638	hgsc.bcm.edu	36	10	21454859	21454859	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	21454859	21454859	C10orf113	10	C	C	T	22
CALCOCO2	10241	hgsc.bcm.edu	36	17	44292736	44292736	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44292736	44292736	CALCOCO2	17	C	C	T	23
CDH4	1002	hgsc.bcm.edu	36	20	59853165	59853165	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	59853165	59853165	CDH4	20	C	C	T	19
CHSY3	337876	hgsc.bcm.edu	36	5	129548619	129548619	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	129548619	129548619	CHSY3	5	G	G	A	39
DDHD2	23259	hgsc.bcm.edu	36	8	38229450	38229450	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	38229450	38229450	DDHD2	8	T	T	G	63
FLRT2	23768	hgsc.bcm.edu	36	14	85158949	85158949	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	85158949	85158949	FLRT2	14	C	C	T	23
GJC3	349149	hgsc.bcm.edu	36	7	99364444	99364444	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	99364444	99364444	GJC3	7	C	C	T	31
LRRC15	131578	hgsc.bcm.edu	36	3	195561407	195561407	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	195561407	195561407	LRRC15	3	G	G	C	41
NR3C1	2908	hgsc.bcm.edu	36	5	142658506	142658506	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	142658506	142658506	NR3C1	5	C	C	G	21
NRF1	4899	hgsc.bcm.edu	36	7	129137499	129137499	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	129137499	129137499	NRF1	7	A	A	T	7
NRXN3	9369	hgsc.bcm.edu	36	14	78502450	78502450	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	78502450	78502450	NRXN3	14	C	C	A	32
PIGG	54872	hgsc.bcm.edu	36	4	510847	510864	+	In_Frame_Del	DEL	CTCTCTGTCCTGGCTGCC	CTCTCTGTCCTGGCTGCC	-	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	CTCTCTGTCCTGGCTGCC	CTCTCTGTCCTGGCTGCC	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	510847	510864	PIGG	4	CTCTCTGTCCTGGCTGCC	CTCTCTGTCCTGGCTGCC	-	28
RBM43	375287	hgsc.bcm.edu	36	2	151816334	151816334	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	151816334	151816334	RBM43	2	T	T	-	52
SEMA3E	9723	hgsc.bcm.edu	36	7	82875639	82875639	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	82875639	82875639	SEMA3E	7	G	G	A	40
TARSL2	123283	hgsc.bcm.edu	36	15	100043682	100043682	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	100043682	100043682	TARSL2	15	A	A	C	1
TMCO5A	145942	hgsc.bcm.edu	36	15	36022863	36022863	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	36022863	36022863	TMCO5A	15	A	A	G	9
TP53	7157	hgsc.bcm.edu	36	17	7520219	7520219	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	7520219	7520219	TP53	17	T	T	A	55
TTR	7276	hgsc.bcm.edu	36	18	27429116	27429116	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01	TCGA-04-1517-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27429116	27429116	TTR	18	C	C	T	17