Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context TP53 7157 genome.wustl.edu 36 17 7519259 7519259 + Missense_Mutation SNP C C A novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7519259 7519259 TP53 17 C C A 32 ENO1 2023 genome.wustl.edu 36 1 8846605 8846605 + Silent SNP G G A novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 8846605 8846605 ENO1 1 G G A 40 SLC2A9 56606 genome.wustl.edu 36 4 9596452 9596452 + Silent SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 9596452 9596452 SLC2A9 4 C C T 27 THSD7A 221981 genome.wustl.edu 36 7 11642346 11642346 + Nonsense_Mutation SNP G G A novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 11642346 11642346 THSD7A 7 G G A 47 PRAMEF4 400735 genome.wustl.edu 36 1 12864794 12864794 + Missense_Mutation SNP A A G novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 12864794 12864794 PRAMEF4 1 A A G 7 MAST3 23031 genome.wustl.edu 36 19 18115610 18115610 + Missense_Mutation SNP T T A novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18115610 18115610 MAST3 19 T T A 58 HRH4 59340 genome.wustl.edu 36 18 20311168 20311168 + Missense_Mutation SNP G G T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20311168 20311168 HRH4 18 G G T 46 MBTPS2 51360 genome.wustl.edu 36 X 21771329 21771329 + Missense_Mutation SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21771329 21771329 MBTPS2 23 C C T 19 HS3ST2 9956 genome.wustl.edu 36 16 22833913 22833913 + Silent SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 22833913 22833913 HS3ST2 16 C C T 21 SPACA3 124912 genome.wustl.edu 36 17 28346653 28346653 + Missense_Mutation SNP G G A novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 28346653 28346653 SPACA3 17 G G A 46 DLGAP4 22839 genome.wustl.edu 36 20 34494244 34494244 + Missense_Mutation SNP G G T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 34494244 34494244 DLGAP4 20 G G T 34 NDUFAF1 51103 genome.wustl.edu 36 15 39474438 39474438 + Missense_Mutation SNP T T G novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 39474438 39474438 NDUFAF1 15 T T G 63 ADAMTS20 80070 genome.wustl.edu 36 12 42103950 42103950 + Missense_Mutation SNP C C G novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42103950 42103950 ADAMTS20 12 C C G 17 LRRC46 90506 genome.wustl.edu 36 17 43267764 43267764 + Missense_Mutation SNP G G A novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43267764 43267764 LRRC46 17 G G A 39 KIAA0467 23334 genome.wustl.edu 36 1 43664194 43664194 + Silent SNP G G A novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 43664194 43664194 KIAA0467 1 G G A 37 ADCY1 107 genome.wustl.edu 36 7 45684099 45684099 + Missense_Mutation SNP G G A novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 45684099 45684099 ADCY1 7 G G A 38 PSG11 5680 genome.wustl.edu 36 19 48211161 48211161 + Missense_Mutation SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48211161 48211161 PSG11 19 C C T 19 PLXNB1 5364 genome.wustl.edu 36 3 48429549 48429549 + Missense_Mutation SNP C C A novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48429549 48429549 PLXNB1 3 C C A 32 COL7A1 1294 genome.wustl.edu 36 3 48598288 48598288 + Missense_Mutation SNP C C A novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48598288 48598288 COL7A1 3 C C A 32 ZFYVE9 9372 genome.wustl.edu 36 1 52584418 52584418 + Missense_Mutation SNP C C G novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 52584418 52584418 ZFYVE9 1 C C G 26 LIPC 3990 genome.wustl.edu 36 15 56617868 56617868 + Silent SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 56617868 56617868 LIPC 15 C C T 28 CDH3 1001 genome.wustl.edu 36 16 67276041 67276041 + Missense_Mutation SNP G G A novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67276041 67276041 CDH3 16 G G A 37 LRRC49 54839 genome.wustl.edu 36 15 69016209 69016209 + Missense_Mutation SNP T T G novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 T T T G T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 69016209 69016209 LRRC49 15 T T G 49 ARR3 407 genome.wustl.edu 36 X 69413276 69413276 + Silent SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 69413276 69413276 ARR3 23 C C T 32 GPRC5C 55890 genome.wustl.edu 36 17 69948051 69948051 + Missense_Mutation SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 69948051 69948051 GPRC5C 17 C C T 31 MYO7A 4647 genome.wustl.edu 36 11 76548208 76548208 + Silent SNP C G G novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 76548208 76548208 MYO7A 11 C G G 22 NTRK2 4915 genome.wustl.edu 36 9 86760151 86760151 + Missense_Mutation SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 86760151 86760151 NTRK2 9 C C T 23 CPSF2 53981 genome.wustl.edu 36 14 91697797 91697797 + Missense_Mutation SNP T T G novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 91697797 91697797 CPSF2 14 T T G 61 LGI1 9211 genome.wustl.edu 36 10 95543049 95543049 + Missense_Mutation SNP G G C novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 95543049 95543049 LGI1 10 G G C 45 ENSG00000211953 0 genome.wustl.edu 36 14 105862454 105862454 + Splice_Site_SNP SNP A A T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 105862454 105862454 ENSG00000211953 14 A A T 6 PPP1R3A 5506 genome.wustl.edu 36 7 113346185 113346185 + Missense_Mutation SNP G G A novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113346185 113346185 PPP1R3A 7 G G A 44 LOC653052 653052 genome.wustl.edu 36 7 139063067 139063067 + Missense_Mutation SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 139063067 139063067 LOC653052 7 C C T 19 CYP11B1 1584 genome.wustl.edu 36 8 143957893 143957893 + Missense_Mutation SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 143957893 143957893 CYP11B1 8 C C T 23 UTRN 7402 genome.wustl.edu 36 6 144848293 144848293 + Missense_Mutation SNP T T G novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 144848293 144848293 UTRN 6 T T G 51 APH1A 51107 genome.wustl.edu 36 1 148507029 148507029 + Missense_Mutation SNP G G C novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 148507029 148507029 APH1A 1 G G C 33 HRNR 388697 genome.wustl.edu 36 1 150453461 150453461 + Missense_Mutation SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150453461 150453461 HRNR 1 C C T 31 GPR149 344758 genome.wustl.edu 36 3 155538219 155538219 + Missense_Mutation SNP G G A novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 155538219 155538219 GPR149 3 G G A 34 OLFML2B 25903 genome.wustl.edu 36 1 160256591 160256591 + Silent SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 160256591 160256591 OLFML2B 1 C C T 21 GLRA3 8001 genome.wustl.edu 36 4 175834972 175834972 + Missense_Mutation SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 175834972 175834972 GLRA3 4 C C T 21 PIKFYVE 200576 genome.wustl.edu 36 2 208846602 208846602 + Missense_Mutation SNP G G C novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 208846602 208846602 PIKFYVE 2 G G C 41 EIF4ENIF1 56478 genome.wustl.edu 36 22 30166737 30166737 + Frame_Shift_Del DEL C C - novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 30166737 30166737 EIF4ENIF1 22 C C - 30 EPDR1 54749 genome.wustl.edu 36 7 37926788 37926800 + Frame_Shift_Del DEL AGGCAGTGGCAGC AGGCAGTGGCAGC - novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 AGGCAGTGGCAGC AGGCAGTGGCAGC Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 37926788 37926800 EPDR1 7 AGGCAGTGGCAGC AGGCAGTGGCAGC - 3 LOC100128975 genome.wustl.edu 36 19 19909009 19909009 + Silent SNP G A G novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G A G G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Silent SNP 19909009 19909009 LOC100128975 19 G A G 33 PABPN1 8106 genome.wustl.edu 36 14 22861342 22861342 + Missense_Mutation SNP A A G novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22861342 22861342 PABPN1 14 A A G 4 ADAMTS17 170691 genome.wustl.edu 36 15 98512972 98512972 + Missense_Mutation SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 98512972 98512972 ADAMTS17 15 C C T 24 COL7A1 1294 genome.wustl.edu 36 3 48604189 48604189 + Silent SNP C C T novel Unknown TCGA-09-0366-01 TCGA-09-0366-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 48604189 48604189 COL7A1 3 C C T 23 SIM1 6492 genome.wustl.edu 36 6 101002802 101002802 + Missense_Mutation SNP G G T Unknown TCGA-09-0366-01 TCGA-09-0366-10 G G G T G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101002802 101002802 SIM1 6 G G T 36