Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ACSL6	23305	hgsc.bcm.edu	36	5	131336940	131336940	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	131336940	131336940	ACSL6	5	C	C	T	27
ANP32B	10541	hgsc.bcm.edu	36	9	99817531	99817531	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	99817531	99817531	ANP32B	9	T	T	A	52
ARHGAP26	23092	hgsc.bcm.edu	36	5	142261788	142261788	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	142261788	142261788	ARHGAP26	5	C	C	T	19
CEP250	11190	hgsc.bcm.edu	36	20	33513745	33513745	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33513745	33513745	CEP250	20	G	G	A	41
ENTPD4	9583	hgsc.bcm.edu	36	8	23361322	23361322	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	23361322	23361322	ENTPD4	8	G	G	A	48
HOXB1	3211	hgsc.bcm.edu	36	17	43963202	43963202	+	Missense_Mutation	SNP	A	A	G	rs12950537	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43963202	43963202	HOXB1	17	A	A	G	15
KIF2B	84643	hgsc.bcm.edu	36	17	49257364	49257364	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49257364	49257364	KIF2B	17	G	G	T	33
KLRC2	3822	hgsc.bcm.edu	36	12	10479729	10479729	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	10479729	10479729	KLRC2	12	C	C	A	32
KPRP	448834	hgsc.bcm.edu	36	1	150998772	150998772	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	150998772	150998772	KPRP	1	C	C	T	22
MYLK	4638	hgsc.bcm.edu	36	3	124995347	124995347	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	124995347	124995347	MYLK	3	T	T	C	59
MYPN	84665	hgsc.bcm.edu	36	10	69625245	69625245	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	69625245	69625245	MYPN	10	A	A	T	14
PIAS2	9063	hgsc.bcm.edu	36	18	42662067	42662067	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	42662067	42662067	PIAS2	18	C	C	A	17
PREB	10113	hgsc.bcm.edu	36	2	27208046	27208046	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27208046	27208046	PREB	2	C	C	T	23
PRPF40B	25766	hgsc.bcm.edu	36	12	48310665	48310665	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48310665	48310665	PRPF40B	12	C	C	T	21
SLC6A20	54716	hgsc.bcm.edu	36	3	45798696	45798696	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	45798696	45798696	SLC6A20	3	T	T	G	51
SNTG1	54212	hgsc.bcm.edu	36	8	51628207	51628207	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	51628207	51628207	SNTG1	8	G	G	T	43
TP53	7157	hgsc.bcm.edu	36	17	7517783	7517783	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	7517783	7517783	TP53	17	C	C	A	30
TRIM36	55521	hgsc.bcm.edu	36	5	114510861	114510861	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	114510861	114510861	TRIM36	5	T	T	A	62
USP36	57602	hgsc.bcm.edu	36	17	74310144	74310149	+	In_Frame_Del	DEL	TTTTTC	TTTTTC	-	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	TTTTTC	TTTTTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	74310144	74310149	USP36	17	TTTTTC	TTTTTC	-	64
ZIM2	23619	hgsc.bcm.edu	36	19	61985245	61985245	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1659-01	TCGA-09-1659-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	61985245	61985245	ZIM2	19	G	G	T	37