Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context NPPA 4878 broad.mit.edu 36 1 11828658 11828658 + Missense_Mutation SNP A A G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11828658 11828658 NPPA 1 A A G 14 PADI3 51702 broad.mit.edu 36 1 17466930 17466930 + Missense_Mutation SNP A A G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 17466930 17466930 PADI3 1 A A G 8 HIST2H2AC 8338 broad.mit.edu 36 1 148125221 148125221 + Nonsense_Mutation SNP C C T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 148125221 148125221 HIST2H2AC 1 C C T 21 PGLYRP4 57115 broad.mit.edu 36 1 151579548 151579548 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 151579548 151579548 PGLYRP4 1 G G A 39 RASAL2 9462 broad.mit.edu 36 1 176535831 176535831 + Nonsense_Mutation SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 176535831 176535831 RASAL2 1 G G T 37 KCNT2 343450 broad.mit.edu 36 1 194516679 194516679 + Missense_Mutation SNP A A C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 194516679 194516679 KCNT2 1 A A C 2 CR2 1380 broad.mit.edu 36 1 205706730 205706730 + Nonsense_Mutation SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 205706730 205706730 CR2 1 G G T 35 RYR2 6262 broad.mit.edu 36 1 235726661 235726661 + Missense_Mutation SNP T T C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 235726661 235726661 RYR2 1 T T C 56 VN1R5 317705 broad.mit.edu 36 1 245486642 245486642 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 245486642 245486642 VN1R5 1 G G C 48 LIPK 643414 broad.mit.edu 36 10 90502302 90502302 + Missense_Mutation SNP A A G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 90502302 90502302 LIPK 10 A A G 4 CYP2C19 1557 broad.mit.edu 36 10 96592719 96592719 + Missense_Mutation SNP T T A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 96592719 96592719 CYP2C19 10 T T A 55 RAPSN 5913 broad.mit.edu 36 11 47419742 47419742 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47419742 47419742 RAPSN 11 G G C 48 OR8H1 219469 broad.mit.edu 36 11 55814446 55814446 + Silent SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 55814446 55814446 OR8H1 11 G G T 47 SSRP1 6749 broad.mit.edu 36 11 56852464 56852464 + Silent SNP G G A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 56852464 56852464 SSRP1 11 G G A 40 TCN1 6947 broad.mit.edu 36 11 59386668 59386668 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59386668 59386668 TCN1 11 C C A 28 PACS1 55690 broad.mit.edu 36 11 65735253 65735253 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65735253 65735253 PACS1 11 C C T 31 C11orf82 220042 broad.mit.edu 36 11 82317532 82317532 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 82317532 82317532 C11orf82 11 C C T 30 FAT3 120114 broad.mit.edu 36 11 91727535 91727535 + Missense_Mutation SNP T T G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 91727535 91727535 FAT3 11 T T G 58 ACAT1 38 broad.mit.edu 36 11 107517594 107517594 + Silent SNP T T C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 107517594 107517594 ACAT1 11 T T C 61 FGF14 2259 broad.mit.edu 36 13 101177047 101177047 + Silent SNP A A G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 101177047 101177047 FGF14 13 A A G 4 AKAP6 9472 broad.mit.edu 36 14 32084933 32084933 + Silent SNP G G A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 32084933 32084933 AKAP6 14 G G A 46 C14orf118 55668 broad.mit.edu 36 14 75714093 75714093 + Missense_Mutation SNP A A T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75714093 75714093 C14orf118 14 A A T 3 BDKRB1 623 broad.mit.edu 36 14 95800367 95800367 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 95800367 95800367 BDKRB1 14 C C A 25 RYR3 6263 broad.mit.edu 36 15 31680950 31680950 + Silent SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 31680950 31680950 RYR3 15 G G T 43 NPRL3 8131 broad.mit.edu 36 16 82697 82697 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 82697 82697 NPRL3 16 G G C 41 TELO2 9894 broad.mit.edu 36 16 1489266 1489266 + Silent SNP G G A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 1489266 1489266 TELO2 16 G G A 47 C16orf75 116028 broad.mit.edu 36 16 11352077 11352077 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11352077 11352077 C16orf75 16 C C T 24 ERCC4 2072 broad.mit.edu 36 16 13949294 13949294 + Silent SNP C C T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 13949294 13949294 ERCC4 16 C C T 21 PRRT2 112476 broad.mit.edu 36 16 29732014 29732014 + Silent SNP G G A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 29732014 29732014 PRRT2 16 G G A 35 EIF4A1 1973 broad.mit.edu 36 17 7421681 7421681 + Missense_Mutation SNP A A G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7421681 7421681 EIF4A1 17 A A G 2 LGALS9C 654346 broad.mit.edu 36 17 18327955 18327955 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18327955 18327955 LGALS9C 17 C C A 19 IFI35 3430 broad.mit.edu 36 17 38419154 38419154 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38419154 38419154 IFI35 17 G G T 40 RGS9 8787 broad.mit.edu 36 17 60651880 60651880 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60651880 60651880 RGS9 17 G G A 39 BPTF 2186 broad.mit.edu 36 17 63331364 63331364 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 63331364 63331364 BPTF 17 G G C 48 CYP2A6 1548 broad.mit.edu 36 19 46044794 46044794 + Silent SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 46044794 46044794 CYP2A6 19 G G T 33 MYH14 79784 broad.mit.edu 36 19 55471160 55471160 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55471160 55471160 MYH14 19 G G T 48 ZNF765 91661 broad.mit.edu 36 19 58604142 58604142 + Missense_Mutation SNP A A T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 58604142 58604142 ZNF765 19 A A T 1 LILRA1 11024 broad.mit.edu 36 19 59798208 59798208 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59798208 59798208 LILRA1 19 C C T 22 KIF3C 3797 broad.mit.edu 36 2 26056956 26056956 + Silent SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 26056956 26056956 KIF3C 2 G G T 43 IL18RAP 8807 broad.mit.edu 36 2 102420236 102420236 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102420236 102420236 IL18RAP 2 G G T 48 BIN1 274 broad.mit.edu 36 2 127544637 127544637 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 127544637 127544637 BIN1 2 C C T 31 MYO1B 4430 broad.mit.edu 36 2 191969465 191969465 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 191969465 191969465 MYO1B 2 G G C 41 UGT1A10 54575 broad.mit.edu 36 2 234210562 234210562 + Missense_Mutation SNP T T C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 234210562 234210562 UGT1A10 2 T T C 52 VPS16 64601 broad.mit.edu 36 20 2794086 2794086 + Missense_Mutation SNP A A G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2794086 2794086 VPS16 20 A A G 12 BPIL1 80341 broad.mit.edu 36 20 31065412 31065413 + Missense_Mutation DNP TG TG AA novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 31065412 31065413 BPIL1 20 TG TG AA 51 DSN1 79980 broad.mit.edu 36 20 34832691 34832691 + Silent SNP T T G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 34832691 34832691 DSN1 20 T T G 55 DNTTIP1 116092 broad.mit.edu 36 20 43863484 43863484 + Nonsense_Mutation SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 43863484 43863484 DNTTIP1 20 G G T 35 SULF2 55959 broad.mit.edu 36 20 45798887 45798887 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45798887 45798887 SULF2 20 C C A 25 B4GALT5 9334 broad.mit.edu 36 20 47696935 47696935 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47696935 47696935 B4GALT5 20 G G T 44 POTED 317754 broad.mit.edu 36 21 13909667 13909667 + Nonsense_Mutation SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 13909667 13909667 POTED 21 G G T 47 GCFC1 94104 broad.mit.edu 36 21 33039006 33039006 + Missense_Mutation SNP A A C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 33039006 33039006 GCFC1 21 A A C 9 HLCS 3141 broad.mit.edu 36 21 37231147 37231147 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37231147 37231147 HLCS 21 G G T 44 SLC6A1 6529 broad.mit.edu 36 3 11034656 11034656 + Silent SNP C C T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 11034656 11034656 SLC6A1 3 C C T 29 CTNNB1 1499 broad.mit.edu 36 3 41253081 41253081 + Splice_Site_SNP SNP A A G rs71811389 Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 41253081 41253081 CTNNB1 3 A A G 15 COL7A1 1294 broad.mit.edu 36 3 48584454 48584454 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48584454 48584454 COL7A1 3 C C G 30 UQCRC1 7384 broad.mit.edu 36 3 48618282 48618283 + Missense_Mutation DNP CC CC AA novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 48618282 48618283 UQCRC1 3 CC CC AA 30 EEFSEC 60678 broad.mit.edu 36 3 129542882 129542882 + Silent SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 129542882 129542882 EEFSEC 3 G G T 44 ABCF3 55324 broad.mit.edu 36 3 185393112 185393112 + Silent SNP C C G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 185393112 185393112 ABCF3 3 C C G 21 THAP9 79725 broad.mit.edu 36 4 84058716 84058716 + Missense_Mutation SNP A A T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 84058716 84058716 THAP9 4 A A T 11 PTPN13 5783 broad.mit.edu 36 4 87950112 87950112 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 87950112 87950112 PTPN13 4 C C A 18 MEPE 56955 broad.mit.edu 36 4 88986112 88986112 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 88986112 88986112 MEPE 4 C C A 17 FAT4 79633 broad.mit.edu 36 4 126461375 126461375 + Silent SNP T T A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 126461375 126461375 FAT4 4 T T A 58 TKTL2 84076 broad.mit.edu 36 4 164612997 164612997 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 164612997 164612997 TKTL2 4 C C A 17 SAP30 8819 broad.mit.edu 36 4 174529208 174529208 + Silent SNP C C A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 174529208 174529208 SAP30 4 C C A 31 GLRA3 8001 broad.mit.edu 36 4 175816848 175816848 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 175816848 175816848 GLRA3 4 C C T 25 KIAA0947 23379 broad.mit.edu 36 5 5513573 5513573 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5513573 5513573 KIAA0947 5 G G A 33 MYO10 4651 broad.mit.edu 36 5 16725879 16725879 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 16725879 16725879 MYO10 5 G G A 34 IL31RA 133396 broad.mit.edu 36 5 55248398 55248398 + Missense_Mutation SNP A A G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55248398 55248398 IL31RA 5 A A G 4 FCHO2 115548 broad.mit.edu 36 5 72400306 72400306 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 72400306 72400306 FCHO2 5 G G T 36 SLCO6A1 133482 broad.mit.edu 36 5 101862268 101862268 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101862268 101862268 SLCO6A1 5 C C A 18 FCHSD1 89848 broad.mit.edu 36 5 141006472 141006472 + Missense_Mutation SNP A A G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 141006472 141006472 FCHSD1 5 A A G 6 TEAD3 7005 broad.mit.edu 36 6 35562328 35562328 + Missense_Mutation SNP A A C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 35562328 35562328 TEAD3 6 A A C 8 MOCS1 0 broad.mit.edu 36 6 39985574 39985574 + Missense_Mutation SNP T T C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39985574 39985574 MOCS1 6 T T C 56 CD109 135228 broad.mit.edu 36 6 74574677 74574677 + Silent SNP A A C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 74574677 74574677 CD109 6 A A C 11 CGA 1081 broad.mit.edu 36 6 87852257 87852257 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 87852257 87852257 CGA 6 C C G 22 MET 4233 broad.mit.edu 36 7 116127036 116127036 + Missense_Mutation SNP A A G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 116127036 116127036 MET 7 A A G 9 NPBWR1 2831 broad.mit.edu 36 8 54015988 54015988 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54015988 54015988 NPBWR1 8 C C T 20 ASPH 444 broad.mit.edu 36 8 62651905 62651905 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62651905 62651905 ASPH 8 C C G 28 CYP7B1 9420 broad.mit.edu 36 8 65671997 65671997 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65671997 65671997 CYP7B1 8 G G A 44 C9orf72 203228 broad.mit.edu 36 9 27538308 27538308 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27538308 27538308 C9orf72 9 C C G 24 UNC13B 10497 broad.mit.edu 36 9 35300543 35300543 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 35300543 35300543 UNC13B 9 C C T 29 TBC1D2 55357 broad.mit.edu 36 9 100057643 100057643 + Missense_Mutation SNP A A G novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100057643 100057643 TBC1D2 9 A A G 8 SURF6 6838 broad.mit.edu 36 9 135189382 135189382 + Silent SNP C C T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 135189382 135189382 SURF6 9 C C T 32 MAGED1 9500 broad.mit.edu 36 X 51656346 51656346 + Silent SNP G G A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 51656346 51656346 MAGED1 23 G G A 33 HUWE1 10075 broad.mit.edu 36 X 53577081 53577081 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53577081 53577081 HUWE1 23 G G T 33 PHF8 23133 broad.mit.edu 36 X 54037048 54037048 + Missense_Mutation SNP T T C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54037048 54037048 PHF8 23 T T C 55 FAM199X 139231 broad.mit.edu 36 X 103321041 103321041 + Missense_Mutation SNP T T C novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 103321041 103321041 FAM199X 23 T T C 56 KIAA1210 57481 broad.mit.edu 36 X 118112043 118112043 + Missense_Mutation SNP T T A novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 118112043 118112043 KIAA1210 23 T T A 53 SPANXN4 441525 broad.mit.edu 36 X 141949669 141949669 + Nonsense_Mutation SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 141949669 141949669 SPANXN4 23 G G T 35 TREX2 11219 broad.mit.edu 36 X 152363969 152363969 + Silent SNP G G T novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 152363969 152363969 TREX2 23 G G T 35 HMBS 3145 broad.mit.edu 36 11 118464151 118464177 + Splice_Site_Del DEL GTGACCTGGGGACTTTTTCTGCAGGAA - GTGACCTGGGGACTTTTTCTGCAGGAA novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Splice_Site_Del DEL 118464151 118464177 HMBS 11 GTGACCTGGGGACTTTTTCTGCAGGAA - GTGACCTGGGGACTTTTTCTGCAGGAA 48 RIMBP2 23504 broad.mit.edu 36 12 129463099 129463127 + Splice_Site_Del DEL ATAGGGGTTTGCGCTTACCTATTTTCTCC - ATAGGGGTTTGCGCTTACCTATTTTCTCC novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Splice_Site_Del DEL 129463099 129463127 RIMBP2 12 ATAGGGGTTTGCGCTTACCTATTTTCTCC - ATAGGGGTTTGCGCTTACCTATTTTCTCC 4 PNP 4860 broad.mit.edu 36 14 20010384 20010385 + Frame_Shift_Del DEL TC - TC novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 20010384 20010385 PNP 14 TC - TC 50 YLPM1 56252 broad.mit.edu 36 14 74334998 74335001 + Frame_Shift_Del DEL GGTT - GGTT novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 74334998 74335001 YLPM1 14 GGTT - GGTT 43 TDP1 55775 broad.mit.edu 36 14 89525057 89525063 + Frame_Shift_Del DEL GTCAGTT - GTCAGTT novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 89525057 89525063 TDP1 14 GTCAGTT - GTCAGTT 44 ATG2B 55102 broad.mit.edu 36 14 95858346 95858347 + Splice_Site_Ins INS - AA - novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Splice_Site_Ins INS 95858346 95858347 ATG2B 14 - AA - 53 IL21R 50615 broad.mit.edu 36 16 27356479 27356504 + Frame_Shift_Del DEL GAGTGTGGCAGCTTTCTCCTGGCTGA - GAGTGTGGCAGCTTTCTCCTGGCTGA novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 27356479 27356504 IL21R 16 GAGTGTGGCAGCTTTCTCCTGGCTGA - GAGTGTGGCAGCTTTCTCCTGGCTGA 41 TP53 7157 broad.mit.edu 36 17 7518991 7519015 + Splice_Site_Del DEL TAAGATGCTGAGGAGGGGCCAGACC - TAAGATGCTGAGGAGGGGCCAGACC novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Splice_Site_Del DEL 7518991 7519015 TP53 17 TAAGATGCTGAGGAGGGGCCAGACC - TAAGATGCTGAGGAGGGGCCAGACC 49 TSC1 7248 broad.mit.edu 36 9 134768895 134768905 + Frame_Shift_Del DEL GATCACCTTGC - GATCACCTTGC novel Unknown TCGA-09-2044-01 TCGA-09-2044-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 134768895 134768905 TSC1 9 GATCACCTTGC - GATCACCTTGC 45