Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context RERE 473 broad.mit.edu 36 1 8341536 8341536 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8341536 8341536 RERE 1 G G A 37 MOV10 4343 broad.mit.edu 36 1 113019167 113019167 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113019167 113019167 MOV10 1 C C G 18 PCDH15 65217 broad.mit.edu 36 10 55747164 55747164 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55747164 55747164 PCDH15 10 G G T 36 MYOF 26509 broad.mit.edu 36 10 95106547 95106547 + Missense_Mutation SNP T T C novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 95106547 95106547 MYOF 10 T T C 52 CD163 9332 broad.mit.edu 36 12 7526584 7526584 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7526584 7526584 CD163 12 G G C 35 A2ML1 144568 broad.mit.edu 36 12 8907744 8907744 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8907744 8907744 A2ML1 12 C C G 17 KRT72 140807 broad.mit.edu 36 12 51267860 51267860 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 51267860 51267860 KRT72 12 C C T 22 SHC4 399694 broad.mit.edu 36 15 46922940 46922940 + Nonsense_Mutation SNP G G A novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 46922940 46922940 SHC4 15 G G A 45 TLN2 83660 broad.mit.edu 36 15 60899796 60899796 + Silent SNP G G A novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 60899796 60899796 TLN2 15 G G A 43 CNOT1 23019 broad.mit.edu 36 16 57146908 57146908 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57146908 57146908 CNOT1 16 G G T 36 TP53 7157 broad.mit.edu 36 17 7519119 7519119 + Missense_Mutation SNP T T C novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7519119 7519119 TP53 17 T T C 51 ZNF521 25925 broad.mit.edu 36 18 21059632 21059632 + Missense_Mutation SNP T T C novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21059632 21059632 ZNF521 18 T T C 62 CDH2 1000 broad.mit.edu 36 18 23819523 23819523 + Missense_Mutation SNP T T C novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23819523 23819523 CDH2 18 T T C 49 FSHR 2492 broad.mit.edu 36 2 49044418 49044418 + Missense_Mutation SNP T T A novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49044418 49044418 FSHR 2 T T A 56 RETSAT 54884 broad.mit.edu 36 2 85431525 85431525 + Missense_Mutation SNP A A T novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 85431525 85431525 RETSAT 2 A A T 8 ATIC 471 broad.mit.edu 36 2 215885547 215885547 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 215885547 215885547 ATIC 2 C C T 30 TCF20 6942 broad.mit.edu 36 22 40937616 40937616 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40937616 40937616 TCF20 22 G G A 42 ACVR2B 93 broad.mit.edu 36 3 38493821 38493821 + Missense_Mutation SNP A A T novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38493821 38493821 ACVR2B 3 A A T 14 KIAA1524 57650 broad.mit.edu 36 3 109753800 109753800 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 109753800 109753800 KIAA1524 3 C C T 32 STXBP5L 9515 broad.mit.edu 36 3 122458805 122458805 + Missense_Mutation SNP T T A novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122458805 122458805 STXBP5L 3 T T A 58 LAMP3 27074 broad.mit.edu 36 3 184354780 184354780 + Missense_Mutation SNP A A G novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 184354780 184354780 LAMP3 3 A A G 16 C3orf43 255798 broad.mit.edu 36 3 197719526 197719526 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 197719526 197719526 C3orf43 3 G G A 34 PPP2R2C 5522 broad.mit.edu 36 4 6425275 6425275 + Silent SNP G G T novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 6425275 6425275 PPP2R2C 4 G G T 33 ANAPC4 29945 broad.mit.edu 36 4 25001688 25001688 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 25001688 25001688 ANAPC4 4 G G C 44 UGDH 7358 broad.mit.edu 36 4 39178193 39178193 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39178193 39178193 UGDH 4 G G A 33 EPHA5 2044 broad.mit.edu 36 4 65899765 65899765 + Silent SNP T T C novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 65899765 65899765 EPHA5 4 T T C 56 CCT5 22948 broad.mit.edu 36 5 10316335 10316335 + Missense_Mutation SNP T T G novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10316335 10316335 CCT5 5 T T G 50 DNAH5 1767 broad.mit.edu 36 5 13823873 13823873 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13823873 13823873 DNAH5 5 C C T 23 CUL9 23113 broad.mit.edu 36 6 43260447 43260447 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43260447 43260447 CUL9 6 G G A 38 ABCC10 89845 broad.mit.edu 36 6 43510542 43510542 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43510542 43510542 ABCC10 6 G G A 43 ZNF746 155061 broad.mit.edu 36 7 148805656 148805656 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 148805656 148805656 ZNF746 7 C C A 22 DLC1 10395 broad.mit.edu 36 8 13004676 13004676 + Silent SNP C C T novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 13004676 13004676 DLC1 8 C C T 30 INTS10 55174 broad.mit.edu 36 8 19719442 19719442 + Silent SNP A A G novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 19719442 19719442 INTS10 8 A A G 7 DMRT1 1761 broad.mit.edu 36 9 884144 884144 + Silent SNP T T A novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 884144 884144 DMRT1 9 T T A 62 TRUB2 26995 broad.mit.edu 36 9 130111720 130111720 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 130111720 130111720 TRUB2 9 C C T 20 SUSD4 55061 broad.mit.edu 36 1 221603326 221603328 + In_Frame_Del DEL TGC - TGC novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 221603326 221603328 SUSD4 1 TGC - TGC 63 LRRIQ1 84125 broad.mit.edu 36 12 84042003 84042003 + Frame_Shift_Del DEL A - A novel Unknown TCGA-09-2045-01 TCGA-09-2045-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 84042003 84042003 LRRIQ1 12 A - A 7