Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context UBR4 23352 broad.mit.edu 36 1 19314717 19314717 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19314717 19314717 UBR4 1 G G T 42 CLSPN 63967 broad.mit.edu 36 1 35974712 35974712 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 35974712 35974712 CLSPN 1 C C T 31 DPH2 1802 broad.mit.edu 36 1 44210323 44210323 + Silent SNP T T C novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 44210323 44210323 DPH2 1 T T C 52 ZRANB2 9406 broad.mit.edu 36 1 71316933 71316933 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71316933 71316933 ZRANB2 1 C C A 21 CAMSAP1L1 23271 broad.mit.edu 36 1 198996695 198996695 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 198996695 198996695 CAMSAP1L1 1 G G T 48 EXO1 9156 broad.mit.edu 36 1 240102020 240102020 + Missense_Mutation SNP A A C novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 A C A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 240102020 240102020 EXO1 1 A A C 1 HBD 3045 broad.mit.edu 36 11 5211992 5211992 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5211992 5211992 HBD 11 C C G 32 ZFPL1 7542 broad.mit.edu 36 11 64612082 64612082 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64612082 64612082 ZFPL1 11 C C T 31 OR2AT4 341152 broad.mit.edu 36 11 74477819 74477819 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74477819 74477819 OR2AT4 11 G G T 48 ATP2B1 490 broad.mit.edu 36 12 88521684 88521684 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 88521684 88521684 ATP2B1 12 C C G 29 ATP6V0A2 23545 broad.mit.edu 36 12 122786043 122786043 + Silent SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 122786043 122786043 ATP6V0A2 12 C C T 19 GPC5 2262 broad.mit.edu 36 13 91143783 91143783 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 91143783 91143783 GPC5 13 C C T 23 SLC10A2 6555 broad.mit.edu 36 13 102501769 102501769 + Silent SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 102501769 102501769 SLC10A2 13 C C T 23 MCF2L 23263 broad.mit.edu 36 13 112747657 112747657 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 112747657 112747657 MCF2L 13 C C T 27 PELI2 57161 broad.mit.edu 36 14 55833216 55833216 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55833216 55833216 PELI2 14 G G A 39 KIAA1409 57578 broad.mit.edu 36 14 93173385 93173385 + Silent SNP A A G novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 93173385 93173385 KIAA1409 14 A A G 8 SALL1 6299 broad.mit.edu 36 16 49733438 49733438 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 T G T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 49733438 49733438 SALL1 16 T T G 57 ZBTB4 57659 broad.mit.edu 36 17 7306308 7306308 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7306308 7306308 ZBTB4 17 C C T 23 TP53 7157 broad.mit.edu 36 17 7519167 7519167 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 T C T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 7519167 7519167 TP53 17 T T C 57 MED1 5469 broad.mit.edu 36 17 34819137 34819137 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34819137 34819137 MED1 17 C C T 22 FCGBP 8857 broad.mit.edu 36 19 45054635 45054635 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 45054635 45054635 FCGBP 19 C C T 27 MRPS5 64969 broad.mit.edu 36 2 95129978 95129978 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 95129978 95129978 MRPS5 2 C C T 24 BAZ2B 29994 broad.mit.edu 36 2 159997727 159997727 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 159997727 159997727 BAZ2B 2 C C T 24 CYP27A1 1593 broad.mit.edu 36 2 219385950 219385950 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 219385950 219385950 CYP27A1 2 C C T 26 ALPP 250 broad.mit.edu 36 2 232953634 232953634 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 232953634 232953634 ALPP 2 C C T 22 IL17RC 84818 broad.mit.edu 36 3 9934070 9934070 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 9934070 9934070 IL17RC 3 T T G 56 STXBP5L 9515 broad.mit.edu 36 3 122247071 122247071 + Nonsense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 122247071 122247071 STXBP5L 3 C C T 19 SPATA16 83893 broad.mit.edu 36 3 174125897 174125897 + Silent SNP C C A novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 174125897 174125897 SPATA16 3 C C A 18 LIPH 200879 broad.mit.edu 36 3 186734077 186734077 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 186734077 186734077 LIPH 3 C C T 31 APBB2 323 broad.mit.edu 36 4 40587200 40587200 + Silent SNP G G A novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 40587200 40587200 APBB2 4 G G A 38 ARHGEF38 54848 broad.mit.edu 36 4 106729943 106729944 + Missense_Mutation DNP GA GA TT novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 106729943 106729944 ARHGEF38 4 GA GA TT 41 S100Z 170591 broad.mit.edu 36 5 76206977 76206977 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 76206977 76206977 S100Z 5 A A G 12 NMUR2 56923 broad.mit.edu 36 5 151764166 151764166 + Silent SNP G G A novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 151764166 151764166 NMUR2 5 G G A 41 LAMA2 3908 broad.mit.edu 36 6 129854834 129854834 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 129854834 129854834 LAMA2 6 C C T 28 GPNMB 10457 broad.mit.edu 36 7 23280357 23280357 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23280357 23280357 GPNMB 7 G G C 35 ABCB1 5243 broad.mit.edu 36 7 87008683 87008683 + Nonsense_Mutation SNP G G A novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 87008683 87008683 ABCB1 7 G G A 40 EIF4EBP1 1978 broad.mit.edu 36 8 38033901 38033901 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38033901 38033901 EIF4EBP1 8 C C A 18 KIF24 347240 broad.mit.edu 36 9 34247952 34247952 + Silent SNP C C T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 34247952 34247952 KIF24 9 C C T 20 LPAR1 1902 broad.mit.edu 36 9 112677753 112677753 + Silent SNP G G A novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 112677753 112677753 LPAR1 9 G G A 40 HUWE1 10075 broad.mit.edu 36 X 53588377 53588377 + Missense_Mutation SNP A A T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 A T A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 53588377 53588377 HUWE1 23 A A T 7 TEX11 56159 broad.mit.edu 36 X 69743565 69743565 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 69743565 69743565 TEX11 23 A A G 8 COL4A6 1288 broad.mit.edu 36 X 107317861 107317861 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 G T G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 107317861 107317861 COL4A6 23 G G T 47 NKRF 55922 broad.mit.edu 36 X 118607769 118607769 + Silent SNP G G A novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 118607769 118607769 NKRF 23 G G A 45 MAP7D3 79649 broad.mit.edu 36 X 135130616 135130616 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0926-01 TCGA-10-0926-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135130616 135130616 MAP7D3 23 G G T 48