Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context DIP2C 22982 genome.wustl.edu 36 10 458810 458810 + Silent SNP G G A novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 458810 458810 DIP2C 10 G G A 38 FAM86A 196483 genome.wustl.edu 36 16 5080489 5080489 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 5080489 5080489 FAM86A 16 C C T 27 ASGR2 433 genome.wustl.edu 36 17 6946148 6946148 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6946148 6946148 ASGR2 17 T T C 49 KLRC2 3822 genome.wustl.edu 36 12 10479201 10479201 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 10479201 10479201 KLRC2 12 A A G 13 PDE3A 5139 genome.wustl.edu 36 12 20694658 20694658 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20694658 20694658 PDE3A 12 G G T 48 CABIN1 23523 genome.wustl.edu 36 22 22860285 22860285 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22860285 22860285 CABIN1 22 G G A 38 HIST1H2BC 8347 genome.wustl.edu 36 6 26232094 26232094 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26232094 26232094 HIST1H2BC 6 C C A 20 PRSS16 10279 genome.wustl.edu 36 6 27324878 27324878 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27324878 27324878 PRSS16 6 C C T 22 ENSG00000215208 genome.wustl.edu 36 9 30790374 30790374 + Splice_Site_SNP SNP T T C novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 30790374 30790374 ENSG00000215208 9 T T C 53 C20orf185 359710 genome.wustl.edu 36 20 31123572 31123572 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31123572 31123572 C20orf185 20 G G A 41 NEUROD6 63974 genome.wustl.edu 36 7 31344459 31344459 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31344459 31344459 NEUROD6 7 C C T 31 GBA2 57704 genome.wustl.edu 36 9 35730010 35730010 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35730010 35730010 GBA2 9 G G A 39 THRAP3 9967 genome.wustl.edu 36 1 36527461 36527461 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36527461 36527461 THRAP3 1 T T G 63 FREM2 341640 genome.wustl.edu 36 13 38328279 38328279 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38328279 38328279 FREM2 13 A A T 3 DSCR4 10281 genome.wustl.edu 36 21 38348854 38348854 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38348854 38348854 DSCR4 21 T T C 56 CCNYL2 414194 genome.wustl.edu 36 10 42285601 42285601 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42285601 42285601 CCNYL2 10 A A G 10 ARHGEF1 9138 genome.wustl.edu 36 19 47090170 47090170 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47090170 47090170 ARHGEF1 19 G G A 39 KLRAQ1 129285 genome.wustl.edu 36 2 48540782 48540782 + Silent SNP T T G novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 48540782 48540782 KLRAQ1 2 T T G 62 AMT 275 genome.wustl.edu 36 3 49431466 49431466 + Silent SNP A A G novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 49431466 49431466 AMT 3 A A G 8 KRT72 140807 genome.wustl.edu 36 12 51267752 51267752 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51267752 51267752 KRT72 12 C C T 19 EHD2 30846 genome.wustl.edu 36 19 52935970 52935970 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 52935970 52935970 EHD2 19 C C G 20 GLI1 2735 genome.wustl.edu 36 12 56150700 56150700 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56150700 56150700 GLI1 12 G G A 39 USP1 7398 genome.wustl.edu 36 1 62688607 62688607 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 62688607 62688607 USP1 1 C C G 28 FRMD4B 23150 genome.wustl.edu 36 3 69313206 69313206 + Silent SNP C C T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 69313206 69313206 FRMD4B 3 C C T 32 NFATC1 4772 genome.wustl.edu 36 18 75294569 75294569 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75294569 75294569 NFATC1 18 C C T 23 GPR98 84059 genome.wustl.edu 36 5 89974258 89974258 + Silent SNP C C T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 89974258 89974258 GPR98 5 C C T 24 MRPL42 28977 genome.wustl.edu 36 12 92405485 92405485 + Nonsense_Mutation SNP G G T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 92405485 92405485 MRPL42 12 G G T 45 TDRD7 23424 genome.wustl.edu 36 9 99277564 99277564 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 99277564 99277564 TDRD7 9 C C T 19 GAL3ST4 79690 genome.wustl.edu 36 7 99595714 99595714 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 99595714 99595714 GAL3ST4 7 C C A 29 CBLB 868 genome.wustl.edu 36 3 106921653 106921653 + Silent SNP C C T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 106921653 106921653 CBLB 3 C C T 31 ARHGEF7 8874 genome.wustl.edu 36 13 110736520 110736520 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 110736520 110736520 ARHGEF7 13 T T G 51 TBX5 6910 genome.wustl.edu 36 12 113278030 113278030 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113278030 113278030 TBX5 12 T T A 55 CNTNAP5 129684 genome.wustl.edu 36 2 124716338 124716338 + Silent SNP G G A novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 124716338 124716338 CNTNAP5 2 G G A 38 UROC1 131669 genome.wustl.edu 36 3 127703408 127703408 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 A A A G A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 127703408 127703408 UROC1 3 A A G 9 L3MBTL3 84456 genome.wustl.edu 36 6 130455630 130455630 + Silent SNP A A G novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 130455630 130455630 L3MBTL3 6 A A G 7 ENSG00000159247 genome.wustl.edu 36 9 140191016 140191016 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C T C T Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140191016 140191016 ENSG00000159247 9 C C T 22 OR2F2 135948 genome.wustl.edu 36 7 143263482 143263482 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 143263482 143263482 OR2F2 7 C C G 17 TCHH 7062 genome.wustl.edu 36 1 150346934 150346934 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150346934 150346934 TCHH 1 T T C 55 MAP3K4 4216 genome.wustl.edu 36 6 161433095 161433095 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 161433095 161433095 MAP3K4 6 A A G 16 SI 6476 genome.wustl.edu 36 3 166220206 166220206 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 166220206 166220206 SI 3 G G T 45 TNR 7143 genome.wustl.edu 36 1 173560251 173560251 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 173560251 173560251 TNR 1 C C A 27 CEP350 9857 genome.wustl.edu 36 1 178290216 178290216 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 178290216 178290216 CEP350 1 C C T 23 TRIML1 339976 genome.wustl.edu 36 4 189305446 189305446 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 189305446 189305446 TRIML1 4 T T A 56 GRHL2 79977 genome.wustl.edu 36 8 102640019 102640020 + Frame_Shift_Ins INS - - T novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 102640019 102640020 GRHL2 8 - - T 45 MKNK1 8569 genome.wustl.edu 36 1 46824234 46824234 + Splice_Site_SNP SNP C G C novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 C C G C C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 46824234 46824234 MKNK1 1 C G C 20 OR5T2 219464 genome.wustl.edu 36 11 55756971 55756971 + Silent SNP A A G novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 55756971 55756971 OR5T2 11 A A G 13 GPR142 350383 genome.wustl.edu 36 17 69880170 69880170 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0723-01 TCGA-13-0723-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 69880170 69880170 GPR142 17 G G A 34 ATP6V1F 9296 genome.wustl.edu 36 7 128292746 128292746 + Missense_Mutation SNP G G A Unknown TCGA-13-0723-01 TCGA-13-0723-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 128292746 128292746 ATP6V1F 7 G G A 38