Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context DOCK8 81704 genome.wustl.edu 36 9 408118 408118 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 408118 408118 DOCK8 9 G G C 35 KCNQ1 3784 genome.wustl.edu 36 11 2561263 2561263 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2561263 2561263 KCNQ1 11 A A T 16 PFKFB3 5209 genome.wustl.edu 36 10 6301630 6301630 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6301630 6301630 PFKFB3 10 C C G 28 TP53 7157 genome.wustl.edu 36 17 7517819 7517819 + Missense_Mutation SNP G G A rs28934574 Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7517819 7517819 TP53 17 G G A 39 MUC16 94025 genome.wustl.edu 36 19 8859702 8859702 + Silent SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 8859702 8859702 MUC16 19 G G A 35 BRPF1 7862 genome.wustl.edu 36 3 9758744 9758744 + Silent SNP G G T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 9758744 9758744 BRPF1 3 G G T 45 LPHN1 22859 genome.wustl.edu 36 19 14124354 14124354 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14124354 14124354 LPHN1 19 G G C 45 TTC39B 158219 genome.wustl.edu 36 9 15204172 15204172 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15204172 15204172 TTC39B 9 G G T 48 KCNN1 3780 genome.wustl.edu 36 19 17961588 17961588 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17961588 17961588 KCNN1 19 G G C 44 LOC100128853 genome.wustl.edu 36 19 23467859 23467859 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23467859 23467859 LOC100128853 19 T T A 56 OPRD1 4985 genome.wustl.edu 36 1 29058393 29058393 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29058393 29058393 OPRD1 1 C C A 23 GABBR1 2550 genome.wustl.edu 36 6 29685104 29685104 + Silent SNP G G C novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 29685104 29685104 GABBR1 6 G G C 45 DDR1 780 genome.wustl.edu 36 6 30971186 30971186 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30971186 30971186 DDR1 6 C C T 23 EPC1 80314 genome.wustl.edu 36 10 32621530 32621530 + Silent SNP G G T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 32621530 32621530 EPC1 10 G G T 40 AGXT2 64902 genome.wustl.edu 36 5 35039672 35039672 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35039672 35039672 AGXT2 5 A A G 7 C19orf2 8725 genome.wustl.edu 36 19 35193895 35193895 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35193895 35193895 C19orf2 19 G G A 33 TRPC4 7223 genome.wustl.edu 36 13 37123424 37123424 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37123424 37123424 TRPC4 13 G G T 47 TMEM87A 25963 genome.wustl.edu 36 15 40316920 40316920 + Splice_Site_SNP SNP A A T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 40316920 40316920 TMEM87A 15 A A T 14 ZNF658 26149 genome.wustl.edu 36 9 40763337 40763337 + Silent SNP C C T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 40763337 40763337 ZNF658 9 C C T 24 TUBGCP4 27229 genome.wustl.edu 36 15 41459634 41459634 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41459634 41459634 TUBGCP4 15 G G A 48 CDC27 996 genome.wustl.edu 36 17 42576246 42576246 + Splice_Site_SNP SNP A A G novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 42576246 42576246 CDC27 17 A A G 14 LEPRE1 64175 genome.wustl.edu 36 1 42996119 42996119 + Silent SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 42996119 42996119 LEPRE1 1 G G A 40 KRTAP10-11 386678 genome.wustl.edu 36 21 44890836 44890836 + Silent SNP C C T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 44890836 44890836 KRTAP10-11 21 C C T 27 MYST2 11143 genome.wustl.edu 36 17 45248246 45248246 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 45248246 45248246 MYST2 17 G G C 33 ABCA13 154664 genome.wustl.edu 36 7 48256090 48256090 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48256090 48256090 ABCA13 7 G G T 43 OR4S1 256148 genome.wustl.edu 36 11 48285216 48285216 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48285216 48285216 OR4S1 11 A A T 2 HLF 3131 genome.wustl.edu 36 17 50747721 50747721 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50747721 50747721 HLF 17 C C G 31 TCF12 6938 genome.wustl.edu 36 15 55143311 55143311 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55143311 55143311 TCF12 15 A A G 15 PCDH15 65217 genome.wustl.edu 36 10 55238564 55238564 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55238564 55238564 PCDH15 10 G G A 33 NLRC5 84166 genome.wustl.edu 36 16 55627535 55627535 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55627535 55627535 NLRC5 16 G G A 33 MS4A1 931 genome.wustl.edu 36 11 59986428 59986428 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59986428 59986428 MS4A1 11 C C A 17 RTN3 10313 genome.wustl.edu 36 11 63280187 63280187 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 63280187 63280187 RTN3 11 G G A 38 RPS6KA4 8986 genome.wustl.edu 36 11 63885946 63885946 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 63885946 63885946 RPS6KA4 11 G G A 40 HEPH 9843 genome.wustl.edu 36 X 65334415 65334415 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 65334415 65334415 HEPH 23 C C T 23 DYRK2 8445 genome.wustl.edu 36 12 66338143 66338143 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 66338143 66338143 DYRK2 12 G G T 42 LRRTM3 347731 genome.wustl.edu 36 10 68527509 68527509 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 68527509 68527509 LRRTM3 10 C C A 25 FAM155B 27112 genome.wustl.edu 36 X 68666246 68666246 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 68666246 68666246 FAM155B 23 A A G 2 MCEE 84693 genome.wustl.edu 36 2 71204994 71204994 + Silent SNP C C T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 71204994 71204994 MCEE 2 C C T 23 UNK 85451 genome.wustl.edu 36 17 71327785 71327785 + Splice_Site_SNP SNP G G C novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 71327785 71327785 UNK 17 G G C 44 RNF157 114804 genome.wustl.edu 36 17 71672458 71672458 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71672458 71672458 RNF157 17 G G T 36 TERF1 7013 genome.wustl.edu 36 8 74099610 74099610 + Splice_Site_SNP SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 74099610 74099610 TERF1 8 G G A 34 USP35 57558 genome.wustl.edu 36 11 77594679 77594679 + Silent SNP C C G novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 77594679 77594679 USP35 11 C C G 25 MDN1 23195 genome.wustl.edu 36 6 90466042 90466042 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 90466042 90466042 MDN1 6 T T A 56 SORBS1 10580 genome.wustl.edu 36 10 97086482 97086482 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 97086482 97086482 SORBS1 10 C C G 30 OR4F6 390648 genome.wustl.edu 36 15 100163773 100163773 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100163773 100163773 OR4F6 15 A A T 2 RRM2B 50484 genome.wustl.edu 36 8 103305502 103305502 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 103305502 103305502 RRM2B 8 C C G 32 GPR132 29933 genome.wustl.edu 36 14 104589053 104589053 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 104589053 104589053 GPR132 14 G G A 39 SORCS3 22986 genome.wustl.edu 36 10 107012229 107012229 + Silent SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 107012229 107012229 SORCS3 10 G G A 38 ATM 472 genome.wustl.edu 36 11 107658692 107658692 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 107658692 107658692 ATM 11 G G C 33 ATXN7L2 127002 genome.wustl.edu 36 1 109835204 109835204 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 109835204 109835204 ATXN7L2 1 C C T 22 SLC20A1 6574 genome.wustl.edu 36 2 113133017 113133017 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113133017 113133017 SLC20A1 2 T T A 54 ZDHHC23 254887 genome.wustl.edu 36 3 115157899 115157899 + Nonsense_Mutation SNP C C G novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 115157899 115157899 ZDHHC23 3 C C G 29 HABP2 3026 genome.wustl.edu 36 10 115328441 115328441 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 115328441 115328441 HABP2 10 C C T 21 GLI2 2736 genome.wustl.edu 36 2 121458760 121458760 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 121458760 121458760 GLI2 2 G G A 40 SEC23IP 11196 genome.wustl.edu 36 10 121667951 121667951 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 121667951 121667951 SEC23IP 10 T T G 59 CNTNAP5 129684 genome.wustl.edu 36 2 124948826 124948826 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124948826 124948826 CNTNAP5 2 C C T 18 RAP2C 57826 genome.wustl.edu 36 X 131175969 131175969 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 131175969 131175969 RAP2C 23 C C G 30 POTEE 0 genome.wustl.edu 36 2 131737909 131737909 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 131737909 131737909 POTEE 2 T T C 55 TOPBP1 11073 genome.wustl.edu 36 3 134845592 134845592 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 134845592 134845592 TOPBP1 3 C C T 30 CTNNA1 1495 genome.wustl.edu 36 5 138146834 138146834 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 138146834 138146834 CTNNA1 5 C C T 21 ZNF7 7553 genome.wustl.edu 36 8 146039084 146039084 + Silent SNP T T C novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 146039084 146039084 ZNF7 8 T T C 61 LCE1A 353131 genome.wustl.edu 36 1 151066620 151066620 + Silent SNP C C T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 151066620 151066620 LCE1A 1 C C T 25 ATF6 22926 genome.wustl.edu 36 1 160002790 160002790 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 160002790 160002790 ATF6 1 G G A 47 LRP2 4036 genome.wustl.edu 36 2 169730764 169730764 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 169730764 169730764 LRP2 2 A A C 12 BAT2L2 23215 genome.wustl.edu 36 1 169802148 169802148 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 169802148 169802148 BAT2L2 1 G G C 33 CCDC108 255101 genome.wustl.edu 36 2 219608465 219608465 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 219608465 219608465 CCDC108 2 G G A 36 TRIM17 51127 genome.wustl.edu 36 1 226662587 226662587 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 226662587 226662587 TRIM17 1 G G T 35 OR2T35 403244 genome.wustl.edu 36 1 246868520 246868520 + Silent SNP G G A novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 246868520 246868520 OR2T35 1 G G A 41 PTPRK 5796 genome.wustl.edu 36 6 128547279 128547279 + Nonsense_Mutation SNP T A T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 T T A T T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 128547279 128547279 PTPRK 6 T A T 64 BRCA2 675 genome.wustl.edu 36 13 31827170 31827170 + Nonsense_Mutation SNP A A T novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 A T A T A T Unknown Valid Germline Phase_III Capture 454_PCR_WGA;Sanger_PCR_WGA dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 31827170 31827170 BRCA2 13 A A T 11 SLC38A6 145389 genome.wustl.edu 36 14 60615398 60615398 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G C G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 60615398 60615398 SLC38A6 14 G G C 35 SLC45A3 85414 genome.wustl.edu 36 1 203898728 203898728 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0726-01 TCGA-13-0726-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 203898728 203898728 SLC45A3 1 G G C 38 CCDC136 64753 genome.wustl.edu 36 7 128237617 128237624 + Frame_Shift_Del DEL TTCCAAAT TTCCAAAT - Unknown TCGA-13-0726-01 TCGA-13-0726-10 TTCCAAAT TTCCAAAT TTCCAAAT - TTCCAAAT TTCCAAAT Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 128237617 128237624 CCDC136 7 TTCCAAAT TTCCAAAT - 52 CCDC136 64753 genome.wustl.edu 36 7 128237632 128237635 + Frame_Shift_Del DEL GTCC GTCC - Unknown TCGA-13-0726-01 TCGA-13-0726-10 GTCC GTCC GTCC - GTCC GTCC Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 128237632 128237635 CCDC136 7 GTCC GTCC - 36