Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
SPEN	23013	broad.mit.edu	36	1	16133869	16133869	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10			G	A	G	G	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	Broad	Silent	SNP	16133869	16133869	SPEN	1	G	G	A	36
LEPRE1	64175	broad.mit.edu	36	1	43004891	43004891	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	43004891	43004891	LEPRE1	1	A	A	T	9
AIM2	9447	broad.mit.edu	36	1	157309709	157309709	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10			A	T	A	A	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	Broad	Missense_Mutation	SNP	157309709	157309709	AIM2	1	A	A	T	1
ABCC2	1244	broad.mit.edu	36	10	101562876	101562876	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	101562876	101562876	ABCC2	10	G	G	T	42
MICALCL	84953	broad.mit.edu	36	11	12272940	12272940	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	12272940	12272940	MICALCL	11	T	T	C	54
CELF1	10658	broad.mit.edu	36	11	47457007	47457007	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47457007	47457007	CELF1	11	C	C	A	30
AHNAK	79026	broad.mit.edu	36	11	62057585	62057585	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	62057585	62057585	AHNAK	11	G	G	T	43
C11orf52	91894	broad.mit.edu	36	11	111301625	111301625	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	111301625	111301625	C11orf52	11	C	C	T	17
GLB1L3	112937	broad.mit.edu	36	11	133682227	133682227	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	133682227	133682227	GLB1L3	11	G	G	T	33
SACS	26278	broad.mit.edu	36	13	22809439	22809439	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10			G	A	G	G	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	Broad	Silent	SNP	22809439	22809439	SACS	13	G	G	A	37
TBC1D4	9882	broad.mit.edu	36	13	74767118	74767118	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	74767118	74767118	TBC1D4	13	A	A	G	8
C14orf115	55237	broad.mit.edu	36	14	73894783	73894783	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10			C	T	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA;Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	73894783	73894783	C14orf115	14	C	C	T	26
PACS2	23241	broad.mit.edu	36	14	104920815	104920815	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	104920815	104920815	PACS2	14	T	T	C	50
GABRB3	2562	broad.mit.edu	36	15	24344296	24344296	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24344296	24344296	GABRB3	15	C	C	T	31
ABHD2	11057	broad.mit.edu	36	15	87535326	87535326	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	87535326	87535326	ABHD2	15	G	G	T	42
PDPK1	5170	broad.mit.edu	36	16	2587125	2587125	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	2587125	2587125	PDPK1	16	G	G	C	43
C17orf42	79736	broad.mit.edu	36	17	26250693	26250693	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	26250693	26250693	C17orf42	17	C	C	A	24
PNPLA6	10908	broad.mit.edu	36	19	7527564	7527564	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	7527564	7527564	PNPLA6	19	C	C	T	19
ZNF486	90649	broad.mit.edu	36	19	20168880	20168880	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	20168880	20168880	ZNF486	19	C	C	T	17
KIAA0355	9710	broad.mit.edu	36	19	39510787	39510787	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39510787	39510787	KIAA0355	19	C	C	G	23
DHDH	27294	broad.mit.edu	36	19	54131213	54131213	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54131213	54131213	DHDH	19	A	A	T	3
EXOC6B	23233	broad.mit.edu	36	2	72580564	72580564	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	72580564	72580564	EXOC6B	2	T	T	A	51
CNTNAP5	129684	broad.mit.edu	36	2	124978470	124978470	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	124978470	124978470	CNTNAP5	2	A	A	C	8
CHRNA1	1134	broad.mit.edu	36	2	175327322	175327322	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	175327322	175327322	CHRNA1	2	C	C	T	19
CPO	130749	broad.mit.edu	36	2	207512599	207512599	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	207512599	207512599	CPO	2	T	T	C	64
PLCD4	84812	broad.mit.edu	36	2	219206695	219206695	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	219206695	219206695	PLCD4	2	G	G	A	45
PAX3	5077	broad.mit.edu	36	2	222866714	222866714	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	222866714	222866714	PAX3	2	G	G	T	42
CST1	1469	broad.mit.edu	36	20	23679339	23679339	+	Silent	SNP	A	A	G	rs3188296	Unknown	TCGA-13-0751-01	TCGA-13-0751-10			A	G	A	A	Unknown	Valid	Somatic	x	x	ManualReview			x	Broad	Silent	SNP	23679339	23679339	CST1	20	A	A	G	16
HYAL2	8692	broad.mit.edu	36	3	50332670	50332670	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10			C	G	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA;Sequenom_PCR_WGA			x	Broad	Silent	SNP	50332670	50332670	HYAL2	3	C	C	G	17
GPR149	344758	broad.mit.edu	36	3	155629846	155629846	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	155629846	155629846	GPR149	3	C	C	T	18
LPP	4026	broad.mit.edu	36	3	190074923	190074923	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	190074923	190074923	LPP	3	A	A	C	8
TAF9	6880	broad.mit.edu	36	5	68701055	68701055	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	68701055	68701055	TAF9	5	G	G	C	35
SLC4A9	83697	broad.mit.edu	36	5	139723833	139723833	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	139723833	139723833	SLC4A9	5	A	A	G	9
DUSP1	1843	broad.mit.edu	36	5	172129786	172129786	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	172129786	172129786	DUSP1	5	G	G	T	44
RING1	6015	broad.mit.edu	36	6	33287050	33287050	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33287050	33287050	RING1	6	C	C	T	24
ANKRD6	22881	broad.mit.edu	36	6	90333529	90333529	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	90333529	90333529	ANKRD6	6	A	A	T	14
KIAA0776	23376	broad.mit.edu	36	6	97095212	97095212	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	97095212	97095212	KIAA0776	6	T	T	C	57
PDE7B	27115	broad.mit.edu	36	6	136517000	136517000	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	136517000	136517000	PDE7B	6	G	G	T	34
AGPAT4	56895	broad.mit.edu	36	6	161507297	161507297	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	161507297	161507297	AGPAT4	6	G	G	C	42
C7orf63	79846	broad.mit.edu	36	7	89776561	89776561	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	89776561	89776561	C7orf63	7	A	A	C	13
FAM133B	257415	broad.mit.edu	36	7	92033277	92033277	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	92033277	92033277	FAM133B	7	C	C	T	31
HEPACAM2	253012	broad.mit.edu	36	7	92663113	92663113	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	92663113	92663113	HEPACAM2	7	T	T	C	52
GYG2	8908	broad.mit.edu	36	X	2784571	2784571	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2784571	2784571	GYG2	23	A	A	T	7
TP53	7157	broad.mit.edu	36	17	7514709	7514710	+	Frame_Shift_Ins	INS	-	-	AGGCCTT	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Ins	INS	7514709	7514710	TP53	17	-	-	AGGCCTT	5
TRPM4	54795	broad.mit.edu	36	19	54377841	54377876	+	In_Frame_Del	DEL	CAAAGCCCCAGCCCTAAAAGGGGGAGCTGCGGAGCT	-	CAAAGCCCCAGCCCTAAAAGGGGGAGCTGCGGAGCT	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	54377841	54377876	TRPM4	19	CAAAGCCCCAGCCCTAAAAGGGGGAGCTGCGGAGCT	-	CAAAGCCCCAGCCCTAAAAGGGGGAGCTGCGGAGCT	21
ASTN2	23245	broad.mit.edu	36	9	118289579	118289588	+	Frame_Shift_Del	DEL	TCAGCAAAAC	-	TCAGCAAAAC	novel	Unknown	TCGA-13-0751-01	TCGA-13-0751-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	118289579	118289588	ASTN2	9	TCAGCAAAAC	-	TCAGCAAAAC	50