Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
APC	324	hgsc.bcm.edu	36	5	112203042	112203042	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	112203042	112203042	APC	5	A	A	G	3
ART3	419	hgsc.bcm.edu	36	4	77222495	77222495	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	77222495	77222495	ART3	4	A	A	T	7
ASTN2	23245	hgsc.bcm.edu	36	9	118778859	118778859	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	118778859	118778859	ASTN2	9	C	C	T	25
ATRX	546	hgsc.bcm.edu	36	X	76805671	76805671	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	76805671	76805671	ATRX	23	A	A	-	9
AURKC	6795	hgsc.bcm.edu	36	19	62435364	62435364	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	62435364	62435364	AURKC	19	C	C	G	25
C8orf80	389643	hgsc.bcm.edu	36	8	27942821	27942821	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27942821	27942821	C8orf80	8	C	C	T	22
CD3E	916	hgsc.bcm.edu	36	11	117689679	117689679	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	117689679	117689679	CD3E	11	G	G	C	48
CDC42BPA	8476	hgsc.bcm.edu	36	1	225249204	225249204	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	225249204	225249204	CDC42BPA	1	C	C	G	17
CHMP6	79643	hgsc.bcm.edu	36	17	76587526	76587526	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	76587526	76587526	CHMP6	17	C	C	T	27
CLUL1	27098	hgsc.bcm.edu	36	18	634982	634982	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	634982	634982	CLUL1	18	C	C	A	26
CNGA3	1261	hgsc.bcm.edu	36	2	98379966	98379966	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	98379966	98379966	CNGA3	2	G	G	T	43
CYTSB	92521	hgsc.bcm.edu	36	17	20091152	20091152	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	20091152	20091152	CYTSB	17	T	T	-	49
DCTN1	1639	hgsc.bcm.edu	36	2	74448402	74448402	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	74448402	74448402	DCTN1	2	G	G	C	36
DNAH2	146754	hgsc.bcm.edu	36	17	7577141	7577141	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7577141	7577141	DNAH2	17	G	G	C	34
DTNBP1	84062	hgsc.bcm.edu	36	6	15760329	15760329	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	15760329	15760329	DTNBP1	6	C	C	A	20
DYNC1LI1	51143	hgsc.bcm.edu	36	3	32545051	32545051	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32545051	32545051	DYNC1LI1	3	C	C	G	17
DYX1C1	161582	hgsc.bcm.edu	36	15	53512085	53512085	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53512085	53512085	DYX1C1	15	T	T	A	62
FAM53B	9679	hgsc.bcm.edu	36	10	126360750	126360750	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	126360750	126360750	FAM53B	10	G	G	C	44
FEM1B	10116	hgsc.bcm.edu	36	15	66369308	66369308	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	66369308	66369308	FEM1B	15	T	T	C	59
GEMIN4	50628	hgsc.bcm.edu	36	17	596827	596827	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	596827	596827	GEMIN4	17	G	G	A	45
GPNMB	10457	hgsc.bcm.edu	36	7	23263171	23263171	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	23263171	23263171	GPNMB	7	G	G	C	47
GTF3C2	2976	hgsc.bcm.edu	36	2	27410103	27410103	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27410103	27410103	GTF3C2	2	G	G	C	33
GUCY2C	2984	hgsc.bcm.edu	36	12	14685296	14685296	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	14685296	14685296	GUCY2C	12	A	A	G	10
GUCY2F	2986	hgsc.bcm.edu	36	X	108538967	108538967	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	108538967	108538967	GUCY2F	23	A	A	G	2
HIPK4	147746	hgsc.bcm.edu	36	19	45578815	45578815	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	45578815	45578815	HIPK4	19	C	C	A	23
INPP5D	3635	hgsc.bcm.edu	36	2	233633530	233633530	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Biotage_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	233633530	233633530	INPP5D	2	G	G	C	34
IQSEC2	23096	hgsc.bcm.edu	36	X	53287693	53287693	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53287693	53287693	IQSEC2	23	C	C	A	17
IVNS1ABP	10625	hgsc.bcm.edu	36	1	183544621	183544621	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	183544621	183544621	IVNS1ABP	1	T	T	A	55
KCND1	3750	hgsc.bcm.edu	36	X	48704813	48704813	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	48704813	48704813	KCND1	23	G	G	C	39
KCNJ12	3768	hgsc.bcm.edu	36	17	21260275	21260275	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	21260275	21260275	KCNJ12	17	C	C	T	31
KCNJ15	3772	hgsc.bcm.edu	36	21	38594117	38594117	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	38594117	38594117	KCNJ15	21	A	A	T	14
KIAA1199	57214	hgsc.bcm.edu	36	15	79021259	79021259	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	79021259	79021259	KIAA1199	15	A	A	G	3
KIF1B	23095	hgsc.bcm.edu	36	1	10308776	10308776	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10308776	10308776	KIF1B	1	G	G	T	48
KIF21B	23046	hgsc.bcm.edu	36	1	199211408	199211408	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	199211408	199211408	KIF21B	1	C	C	T	22
KIF6	221458	hgsc.bcm.edu	36	6	39671829	39671829	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39671829	39671829	KIF6	6	C	C	A	17
KIR2DL4	3805	hgsc.bcm.edu	36	19	60016487	60016487	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	60016487	60016487	KIR2DL4	19	A	A	-	5
KNTC1	9735	hgsc.bcm.edu	36	12	121613140	121613140	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	121613140	121613140	KNTC1	12	G	G	A	46
L1CAM	3897	hgsc.bcm.edu	36	X	152783968	152783968	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	152783968	152783968	L1CAM	23	G	G	T	44
LHFPL4	375323	hgsc.bcm.edu	36	3	9518917	9518917	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	9518917	9518917	LHFPL4	3	A	A	T	6
MADD	8567	hgsc.bcm.edu	36	11	47302391	47302391	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	47302391	47302391	MADD	11	G	G	T	36
MEST	4232	hgsc.bcm.edu	36	7	129925345	129925345	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	129925345	129925345	MEST	7	C	C	T	32
MET	4233	hgsc.bcm.edu	36	7	116223379	116223379	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	116223379	116223379	MET	7	G	G	A	41
NCRNA00174	285908	hgsc.bcm.edu	36	7	65479980	65479981	+	Frame_Shift_Ins	INS	-	-	GC	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	65479980	65479981	NCRNA00174	7	-	-	GC	59
NEDD4L	23327	hgsc.bcm.edu	36	18	54063704	54063704	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54063704	54063704	NEDD4L	18	C	C	A	17
NOTCH1	4851	hgsc.bcm.edu	36	9	138510763	138510763	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	138510763	138510763	NOTCH1	9	G	G	C	42
ONECUT1	3175	hgsc.bcm.edu	36	15	50837172	50837172	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	50837172	50837172	ONECUT1	15	A	A	T	2
PARP10	84875	hgsc.bcm.edu	36	8	145129856	145129856	+	Missense_Mutation	SNP	A	A	G	rs11544989	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	145129856	145129856	PARP10	8	A	A	G	6
PCDHGB4	8641	hgsc.bcm.edu	36	5	140749045	140749045	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	140749045	140749045	PCDHGB4	5	A	A	G	6
PEX16	9409	hgsc.bcm.edu	36	11	45893650	45893650	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	45893650	45893650	PEX16	11	G	G	T	41
PHACTR4	65979	hgsc.bcm.edu	36	1	28658317	28658317	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	28658317	28658317	PHACTR4	1	A	A	-	9
PHLPP1	23239	hgsc.bcm.edu	36	18	58776856	58776856	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	58776856	58776856	PHLPP1	18	C	C	A	28
PNLIPRP2	5408	hgsc.bcm.edu	36	10	118373453	118373453	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	118373453	118373453	PNLIPRP2	10	A	A	G	11
PTPRT	11122	hgsc.bcm.edu	36	20	40160575	40160575	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	40160575	40160575	PTPRT	20	G	G	T	44
RAB3D	9545	hgsc.bcm.edu	36	19	11297141	11297141	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Biotage_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	11297141	11297141	RAB3D	19	C	C	T	26
RYR1	6261	hgsc.bcm.edu	36	19	43651614	43651614	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43651614	43651614	RYR1	19	G	G	T	47
PPP6R3	55291	hgsc.bcm.edu	36	11	68134047	68134047	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	68134047	68134047	PPP6R3	11	C	C	T	21
SCIN	85477	hgsc.bcm.edu	36	7	12658046	12658046	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	12658046	12658046	SCIN	7	A	A	C	3
SERPINB1	1992	hgsc.bcm.edu	36	6	2781139	2781139	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2781139	2781139	SERPINB1	6	C	C	T	18
SIAH2	6478	hgsc.bcm.edu	36	3	151942737	151942737	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	151942737	151942737	SIAH2	3	C	C	T	23
SMARCA1	6594	hgsc.bcm.edu	36	X	128477390	128477390	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	128477390	128477390	SMARCA1	23	G	G	T	33
SNX16	64089	hgsc.bcm.edu	36	8	82898604	82898604	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	82898604	82898604	SNX16	8	C	C	G	28
SPEN	23013	hgsc.bcm.edu	36	1	16127227	16127227	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	16127227	16127227	SPEN	1	T	T	G	59
SRC	6714	hgsc.bcm.edu	36	20	35464354	35464354	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35464354	35464354	SRC	20	G	G	C	41
TFDP1	7027	hgsc.bcm.edu	36	13	113336853	113336853	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	113336853	113336853	TFDP1	13	G	G	T	41
TNK2	10188	hgsc.bcm.edu	36	3	197096239	197096239	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	197096239	197096239	TNK2	3	C	C	T	30
TOP2A	7153	hgsc.bcm.edu	36	17	35822688	35822690	+	In_Frame_Del	DEL	TCT	TCT	-	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	TCT	TCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	35822688	35822690	TOP2A	17	TCT	TCT	-	50
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	7517845	7517845	TP53	17	C	C	T	19
ZNF169	169841	hgsc.bcm.edu	36	9	96102770	96102770	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	96102770	96102770	ZNF169	9	G	G	A	43
ZNF449	203523	hgsc.bcm.edu	36	X	134322057	134322057	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0761-01	TCGA-13-0761-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	134322057	134322057	ZNF449	23	A	A	T	3