Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ABCD2	225	hgsc.bcm.edu	36	12	38266235	38266235	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	38266235	38266235	ABCD2	12	A	A	T	2
ACTR1B	10120	hgsc.bcm.edu	36	2	97640912	97640912	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	97640912	97640912	ACTR1B	2	T	T	G	59
ASGR2	433	hgsc.bcm.edu	36	17	6951128	6951128	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6951128	6951128	ASGR2	17	T	T	C	59
BBS10	79738	hgsc.bcm.edu	36	12	75264523	75264523	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	75264523	75264523	BBS10	12	G	G	C	47
BCORL1	63035	hgsc.bcm.edu	36	X	128977166	128977166	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	128977166	128977166	BCORL1	23	A	A	G	5
C12orf41	54934	hgsc.bcm.edu	36	12	47359151	47359151	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47359151	47359151	C12orf41	12	C	C	G	32
C16orf89	146556	hgsc.bcm.edu	36	16	5055851	5055851	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	5055851	5055851	C16orf89	16	G	G	A	35
C17orf49	124944	hgsc.bcm.edu	36	17	6860705	6860705	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6860705	6860705	C17orf49	17	C	C	A	22
C22orf32	91689	hgsc.bcm.edu	36	22	40805873	40805873	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	40805873	40805873	C22orf32	22	G	G	A	38
C8orf4	56892	hgsc.bcm.edu	36	8	40130275	40130275	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	40130275	40130275	C8orf4	8	C	C	T	21
CACNA1C	775	hgsc.bcm.edu	36	12	2631107	2631107	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	2631107	2631107	CACNA1C	12	G	G	T	38
CADPS2	93664	hgsc.bcm.edu	36	7	122056610	122056610	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	122056610	122056610	CADPS2	7	G	G	A	40
CASP7	840	hgsc.bcm.edu	36	10	115479248	115479248	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	115479248	115479248	CASP7	10	G	G	T	48
CCDC64	92558	hgsc.bcm.edu	36	12	118920788	118920788	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	118920788	118920788	CCDC64	12	G	G	A	47
CCNG2	901	hgsc.bcm.edu	36	4	78304535	78304535	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	78304535	78304535	CCNG2	4	G	G	C	33
CDH17	1015	hgsc.bcm.edu	36	8	95227398	95227398	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	95227398	95227398	CDH17	8	G	G	T	41
CDH6	1004	hgsc.bcm.edu	36	5	31359172	31359172	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	31359172	31359172	CDH6	5	A	A	G	4
CLEC4C	170482	hgsc.bcm.edu	36	12	7785372	7785372	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	7785372	7785372	CLEC4C	12	G	G	C	46
CMYA5	202333	hgsc.bcm.edu	36	5	79070229	79070229	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	79070229	79070229	CMYA5	5	G	G	C	47
CROT	54677	hgsc.bcm.edu	36	7	86849386	86849386	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	86849386	86849386	CROT	7	A	A	G	9
CTDSP1	58190	hgsc.bcm.edu	36	2	218974617	218974617	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	218974617	218974617	CTDSP1	2	G	G	A	41
CTSA	5476	hgsc.bcm.edu	36	20	43956098	43956098	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43956098	43956098	CTSA	20	G	G	C	33
CYP4A11	1579	hgsc.bcm.edu	36	1	47173864	47173864	+	Missense_Mutation	SNP	C	C	A	rs62618709	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47173864	47173864	CYP4A11	1	C	C	A	18
DNAJC18	202052	hgsc.bcm.edu	36	5	138801136	138801136	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	138801136	138801136	DNAJC18	5	G	G	A	40
EDA	1896	hgsc.bcm.edu	36	X	68753061	68753061	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	68753061	68753061	EDA	23	C	C	A	24
EIF2B2	8892	hgsc.bcm.edu	36	14	74542322	74542322	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	74542322	74542322	EIF2B2	14	G	G	A	43
FAM13A	10144	hgsc.bcm.edu	36	4	89890081	89890081	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	89890081	89890081	FAM13A	4	C	C	T	23
FAM78A	286336	hgsc.bcm.edu	36	9	133126386	133126386	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	133126386	133126386	FAM78A	9	C	C	T	19
FAT2	2196	hgsc.bcm.edu	36	5	150867048	150867048	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	150867048	150867048	FAT2	5	T	T	A	52
FNDC4	64838	hgsc.bcm.edu	36	2	27570770	27570770	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27570770	27570770	FNDC4	2	C	C	A	22
GLB1	2720	hgsc.bcm.edu	36	3	33074624	33074625	+	Frame_Shift_Del	DEL	CC	CC	-	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	33074624	33074625	GLB1	3	CC	CC	-	26
GPR128	84873	hgsc.bcm.edu	36	3	101896390	101896390	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	101896390	101896390	GPR128	3	T	T	C	59
GPR174	84636	hgsc.bcm.edu	36	X	78313828	78313828	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	78313828	78313828	GPR174	23	G	G	A	41
GRID1	2894	hgsc.bcm.edu	36	10	87474267	87474267	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	87474267	87474267	GRID1	10	T	T	C	51
GSPT2	23708	hgsc.bcm.edu	36	X	51505196	51505196	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	51505196	51505196	GSPT2	23	A	A	T	3
HMCN1	83872	hgsc.bcm.edu	36	1	184254030	184254030	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	184254030	184254030	HMCN1	1	C	C	G	29
HMCN1	83872	hgsc.bcm.edu	36	1	184273689	184273689	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	184273689	184273689	HMCN1	1	A	A	T	9
HYDIN	54768	hgsc.bcm.edu	36	16	69453539	69453539	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	69453539	69453539	HYDIN	16	C	C	T	30
IGSF1	3547	hgsc.bcm.edu	36	X	130240331	130240331	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	130240331	130240331	IGSF1	23	G	G	T	44
IL1RAPL1	11141	hgsc.bcm.edu	36	X	29882678	29882678	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	29882678	29882678	IL1RAPL1	23	G	G	A	34
INSC	387755	hgsc.bcm.edu	36	11	15090598	15090598	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	15090598	15090598	INSC	11	C	C	T	19
IRF3	3661	hgsc.bcm.edu	36	19	54858466	54858466	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54858466	54858466	IRF3	19	C	C	T	30
KIF2A	3796	hgsc.bcm.edu	36	5	61712708	61712708	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	61712708	61712708	KIF2A	5	A	A	G	16
MID1	4281	hgsc.bcm.edu	36	X	10423677	10423677	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	10423677	10423677	MID1	23	C	C	G	29
MUC17	140453	hgsc.bcm.edu	36	7	100465763	100465763	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	100465763	100465763	MUC17	7	C	C	G	20
MYBPC1	4604	hgsc.bcm.edu	36	12	100595261	100595261	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	100595261	100595261	MYBPC1	12	G	G	C	41
NEUROD4	58158	hgsc.bcm.edu	36	12	53706710	53706710	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	53706710	53706710	NEUROD4	12	A	A	T	9
NFATC2	4773	hgsc.bcm.edu	36	20	49524079	49524079	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49524079	49524079	NFATC2	20	A	A	G	12
ODF1	4956	hgsc.bcm.edu	36	8	103641909	103641909	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	103641909	103641909	ODF1	8	T	T	C	52
OLFML2A	169611	hgsc.bcm.edu	36	9	126597135	126597135	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	126597135	126597135	OLFML2A	9	G	G	A	47
OR8B12	219858	hgsc.bcm.edu	36	11	123918150	123918150	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	123918150	123918150	OR8B12	11	A	A	G	2
PIK3CG	5294	hgsc.bcm.edu	36	7	106296574	106296574	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	106296574	106296574	PIK3CG	7	G	G	A	35
PIK3R5	23533	hgsc.bcm.edu	36	17	8725701	8725701	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	8725701	8725701	PIK3R5	17	T	T	C	62
PKP1	5317	hgsc.bcm.edu	36	1	199553496	199553496	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	199553496	199553496	PKP1	1	A	A	T	9
POPDC2	64091	hgsc.bcm.edu	36	3	120850077	120850077	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	120850077	120850077	POPDC2	3	C	C	T	32
PRICKLE2	166336	hgsc.bcm.edu	36	3	64108040	64108040	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	64108040	64108040	PRICKLE2	3	T	T	A	60
PRKDC	5591	hgsc.bcm.edu	36	8	48956613	48956613	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	48956613	48956613	PRKDC	8	T	T	G	61
PRSS3	5646	hgsc.bcm.edu	36	9	33789033	33789033	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33789033	33789033	PRSS3	9	C	C	T	32
RASGEF1A	221002	hgsc.bcm.edu	36	10	43016285	43016285	+	Silent	SNP	A	A	G	rs41301585	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	43016285	43016285	RASGEF1A	10	A	A	G	3
RELN	5649	hgsc.bcm.edu	36	7	103064116	103064116	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	103064116	103064116	RELN	7	A	A	G	8
RSPO1	284654	hgsc.bcm.edu	36	1	37852459	37852459	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	37852459	37852459	RSPO1	1	C	C	T	21
SCN3A	6328	hgsc.bcm.edu	36	2	165657086	165657086	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	165657086	165657086	SCN3A	2	G	G	A	37
SEC16A	9919	hgsc.bcm.edu	36	9	138462163	138462163	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	138462163	138462163	SEC16A	9	T	T	C	64
SIGLEC11	114132	hgsc.bcm.edu	36	19	55145299	55145299	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	55145299	55145299	SIGLEC11	19	G	G	A	47
SLIT2	9353	hgsc.bcm.edu	36	4	20228183	20228183	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	20228183	20228183	SLIT2	4	C	C	G	22
SMARCB1	6598	hgsc.bcm.edu	36	22	22505823	22505823	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	22505823	22505823	SMARCB1	22	C	C	T	22
SPATA13	221178	hgsc.bcm.edu	36	13	23762949	23762949	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	23762949	23762949	SPATA13	13	A	A	C	6
SUPT6H	6830	hgsc.bcm.edu	36	17	24036018	24036018	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	24036018	24036018	SUPT6H	17	A	A	G	4
SYNPO2	171024	hgsc.bcm.edu	36	4	120167701	120167701	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	120167701	120167701	SYNPO2	4	G	G	A	37
SYT6	148281	hgsc.bcm.edu	36	1	114443306	114443306	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	114443306	114443306	SYT6	1	T	T	A	51
TAS2R20	259295	hgsc.bcm.edu	36	12	11041321	11041321	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11041321	11041321	TAS2R20	12	C	C	T	18
TET1	80312	hgsc.bcm.edu	36	10	70003683	70003683	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	70003683	70003683	TET1	10	C	C	G	20
THOC6	79228	hgsc.bcm.edu	36	16	3016880	3016880	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	3016880	3016880	THOC6	16	G	G	C	34
TP53	7157	hgsc.bcm.edu	36	17	7518996	7518996	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Biotage_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	7518996	7518996	TP53	17	T	T	C	51
TTLL3	26140	hgsc.bcm.edu	36	3	9843888	9843888	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	9843888	9843888	TTLL3	3	T	T	C	64
USP46	64854	hgsc.bcm.edu	36	4	53187119	53187119	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	53187119	53187119	USP46	4	C	C	-	25
VIL1	7429	hgsc.bcm.edu	36	2	219005901	219005901	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	219005901	219005901	VIL1	2	C	C	T	19
ZMYM4	9202	hgsc.bcm.edu	36	1	35628234	35628234	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35628234	35628234	ZMYM4	1	G	G	C	45
ZW10	9183	hgsc.bcm.edu	36	11	113115315	113115315	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01	TCGA-13-0762-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	113115315	113115315	ZW10	11	C	C	G	24