Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context TP53 7157 genome.wustl.edu 36 17 7517845 7517845 + Missense_Mutation SNP C T T rs28934576 Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7517845 7517845 TP53 17 C T T 19 PER3 8863 genome.wustl.edu 36 1 7802824 7802824 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7802824 7802824 PER3 1 C C T 20 KLRC3 3823 genome.wustl.edu 36 12 10464245 10464245 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 10464245 10464245 KLRC3 12 T T C 52 AKAP8L 26993 genome.wustl.edu 36 19 15372127 15372127 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15372127 15372127 AKAP8L 19 C C A 24 OR11H6 122748 genome.wustl.edu 36 14 19762235 19762235 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19762235 19762235 OR11H6 14 T T A 58 SLCO1A2 6579 genome.wustl.edu 36 12 21344736 21344736 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 21344736 21344736 SLCO1A2 12 C C T 22 C2orf16 84226 genome.wustl.edu 36 2 27654707 27654707 + Silent SNP A A G novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 27654707 27654707 C2orf16 2 A A G 13 SYNJ1 8867 genome.wustl.edu 36 21 32933092 32933092 + Silent SNP C C T novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 32933092 32933092 SYNJ1 21 C C T 27 DHX57 90957 genome.wustl.edu 36 2 38939472 38939472 + Silent SNP T T A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 38939472 38939472 DHX57 2 T T A 51 KRT86 3892 genome.wustl.edu 36 12 50985326 50985326 + Silent SNP C C A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 50985326 50985326 KRT86 12 C C A 24 TET1 80312 genome.wustl.edu 36 10 70076261 70076261 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70076261 70076261 TET1 10 G G T 44 ENSG00000214931 genome.wustl.edu 36 9 83720437 83720437 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 83720437 83720437 ENSG00000214931 9 A A T 12 CYP3A4 1576 genome.wustl.edu 36 7 99199567 99199567 + Silent SNP G G A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 99199567 99199567 CYP3A4 7 G G A 39 PCDH19 57526 genome.wustl.edu 36 X 99549239 99549239 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99549239 99549239 PCDH19 23 T T A 58 TARSL2 123283 genome.wustl.edu 36 15 100043728 100043728 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100043728 100043728 TARSL2 15 G G A 36 NALCN 259232 genome.wustl.edu 36 13 100512443 100512443 + Missense_Mutation SNP G A A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100512443 100512443 NALCN 13 G A A 39 GPRASP1 9737 genome.wustl.edu 36 X 101797468 101797468 + Silent SNP G G C novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 101797468 101797468 GPRASP1 23 G G C 41 XPNPEP1 7511 genome.wustl.edu 36 10 111618436 111618436 + Silent SNP G G A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 111618436 111618436 XPNPEP1 10 G G A 35 ATG3 64422 genome.wustl.edu 36 3 113735828 113735828 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113735828 113735828 ATG3 3 C C A 24 MCAM 4162 genome.wustl.edu 36 11 118688545 118688545 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 118688545 118688545 MCAM 11 C C T 30 PTPRZ1 5803 genome.wustl.edu 36 7 121458776 121458776 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 121458776 121458776 PTPRZ1 7 C C T 25 CASR 846 genome.wustl.edu 36 3 123477396 123477396 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123477396 123477396 CASR 3 G G C 34 FAM83A 84985 genome.wustl.edu 36 8 124288594 124288594 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124288594 124288594 FAM83A 8 G G A 39 COPG 22820 genome.wustl.edu 36 3 130453815 130453815 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 130453815 130453815 COPG 3 C C T 26 C7orf29 113763 genome.wustl.edu 36 7 149658736 149658736 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 149658736 149658736 C7orf29 7 G G C 40 ADCY10 55811 genome.wustl.edu 36 1 166119382 166119382 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 166119382 166119382 ADCY10 1 C C T 28 CEP350 9857 genome.wustl.edu 36 1 178290231 178290231 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 178290231 178290231 CEP350 1 G G T 47 CPS1 1373 genome.wustl.edu 36 2 211149360 211149360 + Silent SNP C C G novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 211149360 211149360 CPS1 2 C C G 29 BRCA1 672 genome.wustl.edu 36 17 38512070 38512070 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G G C G G Unknown Valid Somatic Phase_III PCR 454_PCR_WGA dbGAP Sanger_PCR_WGA WashU Missense_Mutation SNP 38512070 38512070 BRCA1 17 G G C 46 MSMB 4477 genome.wustl.edu 36 10 51232387 51232387 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51232387 51232387 MSMB 10 T T A 58 MSMB 4477 genome.wustl.edu 36 10 51232394 51232394 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51232394 51232394 MSMB 10 A A G 4 RTN1 6252 genome.wustl.edu 36 14 59263426 59263426 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59263426 59263426 RTN1 14 C C T 27 TRIP11 9321 genome.wustl.edu 36 14 91510766 91510767 + Missense DNP GG GG CC Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G G C G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense DNP 91510766 91510767 TRIP11 14 GG GG CC 47 CYP2A7P1 genome.wustl.edu 36 19 46224893 46224893 + Silent SNP G G A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 46224893 46224893 CYP2A7P1 19 G G A 38 NGEF 25791 genome.wustl.edu 36 2 233465877 233465877 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 233465877 233465877 NGEF 2 G G T 47 PTGS1 5742 genome.wustl.edu 36 9 124180553 124180553 + Missense_Mutation SNP C T T novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124180553 124180553 PTGS1 9 C T T 23 GPR101 83550 genome.wustl.edu 36 X 135941474 135941474 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0804-01 TCGA-13-0804-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 135941474 135941474 GPR101 23 G G A 40 CCNT1 904 genome.wustl.edu 36 12 47374183 47374183 + Frame_Shift_Del DEL C C - Unknown TCGA-13-0804-01 TCGA-13-0804-10 C C C - C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 47374183 47374183 CCNT1 12 C C - 29 IGHD 0 genome.wustl.edu 36 14 105382769 105382771 + In_Frame_Del DEL CTC CTC - Unknown TCGA-13-0804-01 TCGA-13-0804-10 CTC CTC CTC - CTC CTC Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 105382769 105382771 IGHD 14 CTC CTC - 32 CBLC 23624 genome.wustl.edu 36 19 49988631 49988631 + Frame_Shift_Del DEL A A - Unknown TCGA-13-0804-01 TCGA-13-0804-10 A A A - A A Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 49988631 49988631 CBLC 19 A A - 11