Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context TNFRSF8 943 broad.mit.edu 36 1 12087120 12087120 + Silent SNP T T C novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 T C T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 12087120 12087120 TNFRSF8 1 T T C 59 COL16A1 1307 broad.mit.edu 36 1 31938013 31938013 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31938013 31938013 COL16A1 1 G G T 44 KIAA1522 57648 broad.mit.edu 36 1 33008825 33008825 + Silent SNP C C A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 33008825 33008825 KIAA1522 1 C C A 26 GPBP1L1 60313 broad.mit.edu 36 1 45892901 45892901 + Silent SNP G G A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 45892901 45892901 GPBP1L1 1 G G A 43 LRRC8C 84230 broad.mit.edu 36 1 89952954 89952954 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 89952954 89952954 LRRC8C 1 C C T 23 TARS2 80222 broad.mit.edu 36 1 148736708 148736708 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 148736708 148736708 TARS2 1 C C T 25 USF1 7391 broad.mit.edu 36 1 159278103 159278103 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 159278103 159278103 USF1 1 G G A 45 AHCTF1 25909 broad.mit.edu 36 1 245092075 245092075 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 245092075 245092075 AHCTF1 1 C C A 28 OR51G1 79324 broad.mit.edu 36 11 4901485 4901485 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4901485 4901485 OR51G1 11 C C T 27 NLRP14 338323 broad.mit.edu 36 11 7021026 7021026 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7021026 7021026 NLRP14 11 C C A 28 EIF3M 10480 broad.mit.edu 36 11 32565148 32565148 + Silent SNP T T G novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 32565148 32565148 EIF3M 11 T T G 59 OR4B1 119765 broad.mit.edu 36 11 48195608 48195608 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48195608 48195608 OR4B1 11 G G C 35 OR5M10 390167 broad.mit.edu 36 11 56101670 56101670 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56101670 56101670 OR5M10 11 T T G 57 TAF6L 10629 broad.mit.edu 36 11 62310742 62310742 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62310742 62310742 TAF6L 11 C C T 26 DDX6 1656 broad.mit.edu 36 11 118133101 118133101 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 T C T T Unknown Valid Somatic x x 454_PCR_WGA x Broad Missense_Mutation SNP 118133101 118133101 DDX6 11 T T C 61 DCD 117159 broad.mit.edu 36 12 53324778 53324778 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53324778 53324778 DCD 12 C C G 29 TBX5 6910 broad.mit.edu 36 12 113278161 113278161 + Silent SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 113278161 113278161 TBX5 12 C C T 23 MTUS2 23281 broad.mit.edu 36 13 28831456 28831456 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28831456 28831456 MTUS2 13 C C A 23 THSD1 55901 broad.mit.edu 36 13 51850087 51850087 + Silent SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 51850087 51850087 THSD1 13 C C T 29 SCEL 8796 broad.mit.edu 36 13 77035969 77035969 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 77035969 77035969 SCEL 13 A A G 1 NDFIP2 54602 broad.mit.edu 36 13 78993032 78993032 + Silent SNP G G A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 78993032 78993032 NDFIP2 13 G G A 40 SMOC1 64093 broad.mit.edu 36 14 69416213 69416213 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69416213 69416213 SMOC1 14 C C T 30 YLPM1 56252 broad.mit.edu 36 14 74334890 74334890 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 74334890 74334890 YLPM1 14 G G A 36 CGNL1 84952 broad.mit.edu 36 15 55597894 55597894 + Silent SNP A A T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 55597894 55597894 CGNL1 15 A A T 10 DCUN1D3 123879 broad.mit.edu 36 16 20779062 20779062 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20779062 20779062 DCUN1D3 16 G G T 45 ABR 29 broad.mit.edu 36 17 975411 975411 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 975411 975411 ABR 17 C C T 29 TP53 7157 broad.mit.edu 36 17 7517849 7517849 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7517849 7517849 TP53 17 C C T 18 ALDH3A1 218 broad.mit.edu 36 17 19585023 19585023 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 A C A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 19585023 19585023 ALDH3A1 17 A A C 6 TMEM97 27346 broad.mit.edu 36 17 23670451 23670451 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23670451 23670451 TMEM97 17 G G T 34 C17orf46 124783 broad.mit.edu 36 17 40689046 40689046 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40689046 40689046 C17orf46 17 C C G 30 SLC26A11 284129 broad.mit.edu 36 17 75837594 75837594 + Silent SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 75837594 75837594 SLC26A11 17 C C T 25 SHC2 25759 broad.mit.edu 36 19 376176 376176 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 376176 376176 SHC2 19 C C G 24 RGL3 57139 broad.mit.edu 36 19 11369184 11369184 + Silent SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 11369184 11369184 RGL3 19 C C T 23 ZNF471 57573 broad.mit.edu 36 19 61728868 61728868 + Silent SNP G G A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 61728868 61728868 ZNF471 19 G G A 33 RSAD2 91543 broad.mit.edu 36 2 6953397 6953397 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6953397 6953397 RSAD2 2 C C T 24 ZNF513 130557 broad.mit.edu 36 2 27454395 27454395 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27454395 27454395 ZNF513 2 T T A 55 PLB1 151056 broad.mit.edu 36 2 28678331 28678331 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 G T G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 28678331 28678331 PLB1 2 G G T 33 GMCL1 64395 broad.mit.edu 36 2 69935488 69935488 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69935488 69935488 GMCL1 2 G G A 45 BIN1 274 broad.mit.edu 36 2 127536175 127536175 + Silent SNP G G C novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 127536175 127536175 BIN1 2 G G C 45 TTLL4 9654 broad.mit.edu 36 2 219324711 219324711 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 219324711 219324711 TTLL4 2 G G A 33 TTLL4 9654 broad.mit.edu 36 2 219325777 219325777 + Silent SNP G G T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 219325777 219325777 TTLL4 2 G G T 41 TUBB1 81027 broad.mit.edu 36 20 57032379 57032379 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57032379 57032379 TUBB1 20 A A T 7 DSCAM 1826 broad.mit.edu 36 21 40481721 40481721 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 40481721 40481721 DSCAM 21 C C A 30 CRYBB1 1414 broad.mit.edu 36 22 25327971 25327971 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 25327971 25327971 CRYBB1 22 G G T 48 EPHB1 2047 broad.mit.edu 36 3 135997165 135997165 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135997165 135997165 EPHB1 3 T T A 51 BANK1 55024 broad.mit.edu 36 4 102969992 102969992 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102969992 102969992 BANK1 4 T T G 49 FAT1 2195 broad.mit.edu 36 4 187777935 187777935 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 187777935 187777935 FAT1 4 C C A 20 GZMA 3001 broad.mit.edu 36 5 54437145 54437145 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54437145 54437145 GZMA 5 A A T 8 PCDHGA3 56112 broad.mit.edu 36 5 140705974 140705974 + Silent SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 140705974 140705974 PCDHGA3 5 C C T 27 PCDH1 5097 broad.mit.edu 36 5 141228507 141228507 + Silent SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 141228507 141228507 PCDH1 5 C C T 21 ADAM19 8728 broad.mit.edu 36 5 156849979 156849979 + Silent SNP C C A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 156849979 156849979 ADAM19 5 C C A 29 STK10 6793 broad.mit.edu 36 5 171453036 171453036 + Silent SNP G G T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 171453036 171453036 STK10 5 G G T 34 C5orf25 375484 broad.mit.edu 36 5 175673374 175673374 + Silent SNP C C G novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 175673374 175673374 C5orf25 5 C C G 22 SLC17A1 6568 broad.mit.edu 36 6 25934811 25934811 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 25934811 25934811 SLC17A1 6 A A T 4 SCAND3 114821 broad.mit.edu 36 6 28662466 28662466 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28662466 28662466 SCAND3 6 G G A 46 UNC5CL 222643 broad.mit.edu 36 6 41110695 41110695 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41110695 41110695 UNC5CL 6 A A G 8 TTBK1 84630 broad.mit.edu 36 6 43338651 43338651 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43338651 43338651 TTBK1 6 G G A 34 DST 667 broad.mit.edu 36 6 56605718 56605718 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 T C T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 56605718 56605718 DST 6 T T C 50 DST 667 broad.mit.edu 36 6 56643499 56643499 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 56643499 56643499 DST 6 C C A 30 L3MBTL3 84456 broad.mit.edu 36 6 130431218 130431218 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 130431218 130431218 L3MBTL3 6 G G T 34 LOC729920 729920 broad.mit.edu 36 7 16412440 16412440 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 16412440 16412440 LOC729920 7 A A C 8 TRRAP 8295 broad.mit.edu 36 7 98351404 98351404 + Silent SNP C C A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 98351404 98351404 TRRAP 7 C C A 32 CPA2 1358 broad.mit.edu 36 7 129716757 129716757 + Silent SNP C C G novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 129716757 129716757 CPA2 7 C C G 21 FBXO16 157574 broad.mit.edu 36 8 28370266 28370266 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28370266 28370266 FBXO16 8 T T A 54 CYP11B2 1585 broad.mit.edu 36 8 143991819 143991819 + Silent SNP G G A novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 143991819 143991819 CYP11B2 8 G G A 40 DFNB31 25861 broad.mit.edu 36 9 116226584 116226584 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 116226584 116226584 DFNB31 9 G G C 40 HUWE1 10075 broad.mit.edu 36 X 53628780 53628780 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 A T A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 53628780 53628780 HUWE1 23 A A T 9 PHF8 23133 broad.mit.edu 36 X 54043030 54043030 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54043030 54043030 PHF8 23 C C T 32 TKTL1 8277 broad.mit.edu 36 X 153209201 153209201 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0886-01 TCGA-13-0886-10 C G C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 153209201 153209201 TKTL1 23 C C G 25