Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ABCB4	5244	hgsc.bcm.edu	36	7	86894012	86894012	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	86894012	86894012	ABCB4	7	G	G	C	44
ACVR2B	93	hgsc.bcm.edu	36	3	38495701	38495701	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	38495701	38495701	ACVR2B	3	G	G	C	46
ADAM30	11085	hgsc.bcm.edu	36	1	120239099	120239099	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	120239099	120239099	ADAM30	1	T	T	C	64
ADAMTS14	140766	hgsc.bcm.edu	36	10	72170814	72170814	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	72170814	72170814	ADAMTS14	10	A	A	T	11
ADAMTS16	170690	hgsc.bcm.edu	36	5	5371277	5371277	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5371277	5371277	ADAMTS16	5	A	A	G	10
ADORA3	140	hgsc.bcm.edu	36	1	111834883	111834883	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	111834883	111834883	ADORA3	1	C	C	T	18
AGPAT4	56895	hgsc.bcm.edu	36	6	161477624	161477624	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	161477624	161477624	AGPAT4	6	T	T	A	58
AHCYL1	10768	hgsc.bcm.edu	36	1	110362131	110362131	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	110362131	110362131	AHCYL1	1	C	C	T	23
ANKRD17	26057	hgsc.bcm.edu	36	4	74175444	74175444	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	74175444	74175444	ANKRD17	4	G	G	C	46
ARHGAP30	257106	hgsc.bcm.edu	36	1	159289698	159289698	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	159289698	159289698	ARHGAP30	1	T	T	C	55
ATG9B	285973	hgsc.bcm.edu	36	7	150351124	150351124	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	150351124	150351124	ATG9B	7	C	C	A	19
ATG9B	285973	hgsc.bcm.edu	36	7	150351129	150351129	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	150351129	150351129	ATG9B	7	C	C	A	21
BAIAP2L1	55971	hgsc.bcm.edu	36	7	97787314	97787314	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	97787314	97787314	BAIAP2L1	7	A	A	G	16
BCL7A	605	hgsc.bcm.edu	36	12	120977237	120977237	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	120977237	120977237	BCL7A	12	A	A	C	11
BICC1	80114	hgsc.bcm.edu	36	10	60219152	60219152	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	60219152	60219152	BICC1	10	A	A	C	1
C19orf44	84167	hgsc.bcm.edu	36	19	16481615	16481615	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	16481615	16481615	C19orf44	19	C	C	T	22
C1orf95	375057	hgsc.bcm.edu	36	1	224803372	224803372	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	224803372	224803372	C1orf95	1	C	C	G	17
C5orf20	140947	hgsc.bcm.edu	36	5	134810380	134810380	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	134810380	134810380	C5orf20	5	G	G	C	35
C6	729	hgsc.bcm.edu	36	5	41189853	41189853	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	41189853	41189853	C6	5	C	C	T	23
CADM3	57863	hgsc.bcm.edu	36	1	157436271	157436271	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	157436271	157436271	CADM3	1	C	C	A	20
CCDC67	159989	hgsc.bcm.edu	36	11	92742901	92742901	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	92742901	92742901	CCDC67	11	G	G	A	36
CIDEC	63924	hgsc.bcm.edu	36	3	9886605	9886605	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	9886605	9886605	CIDEC	3	G	G	C	41
CIT	11113	hgsc.bcm.edu	36	12	118683234	118683234	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	118683234	118683234	CIT	12	G	G	C	48
CLCA4	22802	hgsc.bcm.edu	36	1	86809426	86809426	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	86809426	86809426	CLCA4	1	T	T	A	62
CNGA1	1259	hgsc.bcm.edu	36	4	47640057	47640057	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	47640057	47640057	CNGA1	4	G	G	C	45
CNPY3	10695	hgsc.bcm.edu	36	6	43013519	43013519	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	43013519	43013519	CNPY3	6	C	C	T	19
COL13A1	1305	hgsc.bcm.edu	36	10	71232477	71232477	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	71232477	71232477	COL13A1	10	G	G	A	37
CORO2B	10391	hgsc.bcm.edu	36	15	66798548	66798548	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	66798548	66798548	CORO2B	15	C	C	A	18
CSMD3	114788	hgsc.bcm.edu	36	8	113771362	113771362	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	113771362	113771362	CSMD3	8	T	T	A	62
CYC1	1537	hgsc.bcm.edu	36	8	145223514	145223515	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	145223514	145223515	CYC1	8	CT	CT	-	28
CYTSB	92521	hgsc.bcm.edu	36	17	20048385	20048385	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	20048385	20048385	CYTSB	17	C	C	G	19
DEM1	64789	hgsc.bcm.edu	36	1	40753832	40753832	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	40753832	40753832	DEM1	1	C	C	G	26
DHX29	54505	hgsc.bcm.edu	36	5	54627893	54627898	+	In_Frame_Del	DEL	CTTTGT	CTTTGT	-	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	CTTTGT	CTTTGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	54627893	54627898	DHX29	5	CTTTGT	CTTTGT	-	24
DLEC1	9940	hgsc.bcm.edu	36	3	38133126	38133126	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	38133126	38133126	DLEC1	3	G	G	A	39
EGFR	1956	hgsc.bcm.edu	36	7	55209171	55209171	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55209171	55209171	EGFR	7	G	G	C	41
EIF4A2	1974	hgsc.bcm.edu	36	3	187988016	187988016	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	187988016	187988016	EIF4A2	3	G	G	C	45
EPS15L1	58513	hgsc.bcm.edu	36	19	16413987	16413987	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	16413987	16413987	EPS15L1	19	A	A	G	14
FAM47B	170062	hgsc.bcm.edu	36	X	34871989	34871989	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	34871989	34871989	FAM47B	23	C	C	A	20
FBLN5	10516	hgsc.bcm.edu	36	14	91473124	91473124	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	91473124	91473124	FBLN5	14	G	G	C	45
FLJ10357	55701	hgsc.bcm.edu	36	14	20614818	20614818	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	20614818	20614818	FLJ10357	14	C	C	G	26
TMEM150C	441027	hgsc.bcm.edu	36	4	83642942	83642942	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	83642942	83642942	TMEM150C	4	C	C	T	17
GPR19	2842	hgsc.bcm.edu	36	12	12705437	12705437	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	12705437	12705437	GPR19	12	G	G	C	42
GPRIN3	285513	hgsc.bcm.edu	36	4	90388391	90388391	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	90388391	90388391	GPRIN3	4	G	G	C	43
GPT2	84706	hgsc.bcm.edu	36	16	45489108	45489108	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	45489108	45489108	GPT2	16	C	C	T	19
GTF3C5	9328	hgsc.bcm.edu	36	9	134907423	134907423	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	134907423	134907423	GTF3C5	9	G	G	A	42
HAUS8	93323	hgsc.bcm.edu	36	19	17030444	17030444	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	17030444	17030444	HAUS8	19	T	T	-	56
HMCN1	83872	hgsc.bcm.edu	36	1	184342660	184342660	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	184342660	184342660	HMCN1	1	A	A	T	14
HRG	3273	hgsc.bcm.edu	36	3	187872125	187872125	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	187872125	187872125	HRG	3	T	T	G	49
HRH1	3269	hgsc.bcm.edu	36	3	11275790	11275790	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	11275790	11275790	HRH1	3	G	G	T	42
HUS1	3364	hgsc.bcm.edu	36	7	47984571	47984571	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47984571	47984571	HUS1	7	G	G	T	48
INPP5K	51763	hgsc.bcm.edu	36	17	1348073	1348073	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	1348073	1348073	INPP5K	17	C	C	A	19
IQCF1	132141	hgsc.bcm.edu	36	3	51904143	51904143	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	51904143	51904143	IQCF1	3	G	G	A	39
ITGA2B	3674	hgsc.bcm.edu	36	17	39810591	39810591	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	39810591	39810591	ITGA2B	17	C	C	T	18
ITGA4	3676	hgsc.bcm.edu	36	2	182095165	182095165	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	182095165	182095165	ITGA4	2	C	C	A	22
ITGAL	3683	hgsc.bcm.edu	36	16	30414931	30414931	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30414931	30414931	ITGAL	16	G	G	A	33
JAKMIP2	9832	hgsc.bcm.edu	36	5	146977681	146977681	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	146977681	146977681	JAKMIP2	5	G	G	A	48
JAKMIP2	9832	hgsc.bcm.edu	36	5	147020721	147020721	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	147020721	147020721	JAKMIP2	5	G	G	A	38
KCNH5	27133	hgsc.bcm.edu	36	14	62523610	62523610	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	62523610	62523610	KCNH5	14	C	C	A	20
KEL	3792	hgsc.bcm.edu	36	7	142361733	142361733	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	142361733	142361733	KEL	7	C	C	T	32
KIAA1614	57710	hgsc.bcm.edu	36	1	179152716	179152716	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	179152716	179152716	KIAA1614	1	G	G	T	42
KLC3	147700	hgsc.bcm.edu	36	19	50543809	50543809	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	50543809	50543809	KLC3	19	C	C	T	19
KLHL29	114818	hgsc.bcm.edu	36	2	23779600	23779601	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	23779600	23779601	KLHL29	2	-	-	T	32
KRTCAP2	200185	hgsc.bcm.edu	36	1	153408658	153408658	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	153408658	153408658	KRTCAP2	1	A	A	T	9
LAMA2	3908	hgsc.bcm.edu	36	6	129517421	129517421	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	129517421	129517421	LAMA2	6	G	G	T	40
LAMC3	10319	hgsc.bcm.edu	36	9	132926245	132926245	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	132926245	132926245	LAMC3	9	A	A	G	12
LDHC	3948	hgsc.bcm.edu	36	11	18390952	18390952	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	18390952	18390952	LDHC	11	A	A	C	15
LRRN3	54674	hgsc.bcm.edu	36	7	110550512	110550512	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	110550512	110550512	LRRN3	7	A	A	C	5
MAP4	4134	hgsc.bcm.edu	36	3	48015308	48015308	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48015308	48015308	MAP4	3	T	T	A	58
METTL12	751071	hgsc.bcm.edu	36	11	62189931	62189932	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	62189931	62189932	METTL12	11	-	-	C	42
MYBPC2	4606	hgsc.bcm.edu	36	19	55653730	55653731	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	55653730	55653731	MYBPC2	19	-	-	C	34
NEU1	4758	hgsc.bcm.edu	36	6	31935939	31935939	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	31935939	31935939	NEU1	6	G	G	A	39
NFKBID	84807	hgsc.bcm.edu	36	19	41073211	41073211	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41073211	41073211	NFKBID	19	C	C	G	20
NHS	4810	hgsc.bcm.edu	36	X	17653878	17653878	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	17653878	17653878	NHS	23	T	T	G	59
NKX6-3	157848	hgsc.bcm.edu	36	8	41623876	41623876	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	41623876	41623876	NKX6-3	8	A	A	C	3
NOTCH2	4853	hgsc.bcm.edu	36	1	120294980	120294980	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	120294980	120294980	NOTCH2	1	T	T	C	49
NPR3	4883	hgsc.bcm.edu	36	5	32820708	32820708	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32820708	32820708	NPR3	5	A	A	T	14
NRAP	4892	hgsc.bcm.edu	36	10	115392776	115392776	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	115392776	115392776	NRAP	10	C	C	G	32
NXF3	56000	hgsc.bcm.edu	36	X	102225226	102225226	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102225226	102225226	NXF3	23	C	C	G	32
OR5M9	390162	hgsc.bcm.edu	36	11	55986717	55986717	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55986717	55986717	OR5M9	11	A	A	T	2
P2RY13	53829	hgsc.bcm.edu	36	3	152529058	152529058	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	152529058	152529058	P2RY13	3	A	A	C	1
PFDN5	5204	hgsc.bcm.edu	36	12	51976327	51976327	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	51976327	51976327	PFDN5	12	G	G	C	48
PIK3C2G	5288	hgsc.bcm.edu	36	12	18532773	18532773	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	18532773	18532773	PIK3C2G	12	C	C	A	29
PKP1	5317	hgsc.bcm.edu	36	1	199557862	199557862	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	199557862	199557862	PKP1	1	G	G	A	34
PLA2G15	23659	hgsc.bcm.edu	36	16	66850922	66850923	+	Frame_Shift_Del	DEL	GT	GT	-	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	66850922	66850923	PLA2G15	16	GT	GT	-	36
PPFIA1	8500	hgsc.bcm.edu	36	11	69848644	69848644	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	69848644	69848644	PPFIA1	11	G	G	A	39
PTCHD3	374308	hgsc.bcm.edu	36	10	27727479	27727479	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27727479	27727479	PTCHD3	10	T	T	G	64
PXN	5829	hgsc.bcm.edu	36	12	119137093	119137093	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	119137093	119137093	PXN	12	C	C	G	23
RASGEF1C	255426	hgsc.bcm.edu	36	5	179488073	179488073	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	179488073	179488073	RASGEF1C	5	G	G	A	41
RBM12B	389677	hgsc.bcm.edu	36	8	94815321	94815321	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	94815321	94815321	RBM12B	8	C	C	-	30
RBM12B	389677	hgsc.bcm.edu	36	8	94815327	94815327	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	94815327	94815327	RBM12B	8	G	G	A	43
S100A7L2	645922	hgsc.bcm.edu	36	1	151677364	151677364	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	151677364	151677364	S100A7L2	1	T	T	C	54
SEC63	11231	hgsc.bcm.edu	36	6	108321467	108321467	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	108321467	108321467	SEC63	6	T	T	-	56
SEMA5A	9037	hgsc.bcm.edu	36	5	9119612	9119612	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	9119612	9119612	SEMA5A	5	C	C	T	31
SFI1	9814	hgsc.bcm.edu	36	22	30343014	30343014	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30343014	30343014	SFI1	22	G	G	T	35
SGTA	6449	hgsc.bcm.edu	36	19	2713579	2713579	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2713579	2713579	SGTA	19	C	C	G	28
SIN3A	25942	hgsc.bcm.edu	36	15	73469099	73469099	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	73469099	73469099	SIN3A	15	G	G	A	45
SLC24A4	123041	hgsc.bcm.edu	36	14	92018837	92018837	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	92018837	92018837	SLC24A4	14	T	T	A	58
SLC2A11	66035	hgsc.bcm.edu	36	22	22547312	22547312	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	22547312	22547312	SLC2A11	22	C	C	A	30
SLC8A1	6546	hgsc.bcm.edu	36	2	40510125	40510125	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	40510125	40510125	SLC8A1	2	C	C	A	31
SLFN5	162394	hgsc.bcm.edu	36	17	30615640	30615640	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30615640	30615640	SLFN5	17	A	A	T	16
SLIT3	6586	hgsc.bcm.edu	36	5	168122210	168122210	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	168122210	168122210	SLIT3	5	T	T	C	62
SMC1B	27127	hgsc.bcm.edu	36	22	44126997	44126997	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	44126997	44126997	SMC1B	22	G	G	C	48
SOX30	11063	hgsc.bcm.edu	36	5	156986010	156986010	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	156986010	156986010	SOX30	5	C	C	T	31
SPRED2	200734	hgsc.bcm.edu	36	2	65412678	65412678	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	65412678	65412678	SPRED2	2	A	A	G	10
TAF1	6872	hgsc.bcm.edu	36	X	70596215	70596215	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	70596215	70596215	TAF1	23	T	T	G	56
TAGAP	117289	hgsc.bcm.edu	36	6	159380310	159380310	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	159380310	159380310	TAGAP	6	G	G	C	39
TG	7038	hgsc.bcm.edu	36	8	133963361	133963361	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	133963361	133963361	TG	8	G	G	A	48
THBS3	7059	hgsc.bcm.edu	36	1	153441286	153441286	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	153441286	153441286	THBS3	1	C	C	G	20
TIMD4	91937	hgsc.bcm.edu	36	5	156314073	156314073	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	156314073	156314073	TIMD4	5	A	A	T	7
TMEM177	80775	hgsc.bcm.edu	36	2	120155729	120155729	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	120155729	120155729	TMEM177	2	A	A	C	2
TNIK	23043	hgsc.bcm.edu	36	3	172428700	172428700	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	172428700	172428700	TNIK	3	C	C	G	19
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7517845	7517845	TP53	17	C	C	T	19
TSPAN31	6302	hgsc.bcm.edu	36	12	56425943	56425943	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	56425943	56425943	TSPAN31	12	A	A	C	6
UBLCP1	134510	hgsc.bcm.edu	36	5	158637839	158637839	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	158637839	158637839	UBLCP1	5	G	G	A	48
ZFHX3	463	hgsc.bcm.edu	36	16	71384705	71384705	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	71384705	71384705	ZFHX3	16	A	A	C	11
ZNF654	55279	hgsc.bcm.edu	36	3	88272850	88272850	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01	TCGA-13-0900-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	88272850	88272850	ZNF654	3	A	A	C	1