Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ACADVL	37	hgsc.bcm.edu	36	17	7068415	7068416	+	In_Frame_Ins	INS	-	-	TCC	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Ins	INS	7068415	7068416	ACADVL	17	-	-	TCC	36
ACBD4	79777	hgsc.bcm.edu	36	17	40570331	40570334	+	Frame_Shift_Del	DEL	GGCA	GGCA	-	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	GGCA	GGCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	40570331	40570334	ACBD4	17	GGCA	GGCA	-	39
ACOT4	122970	hgsc.bcm.edu	36	14	73132061	73132061	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	73132061	73132061	ACOT4	14	T	T	A	56
ADAM22	53616	hgsc.bcm.edu	36	7	87401725	87401725	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	87401725	87401725	ADAM22	7	G	G	A	39
ADAMTS5	11096	hgsc.bcm.edu	36	21	27227082	27227082	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	27227082	27227082	ADAMTS5	21	G	G	A	34
ADCY4	196883	hgsc.bcm.edu	36	14	23857808	23857808	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	23857808	23857808	ADCY4	14	G	G	T	39
ADCY9	115	hgsc.bcm.edu	36	16	4104093	4104093	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	4104093	4104093	ADCY9	16	C	C	G	17
ADD1	118	hgsc.bcm.edu	36	4	2898181	2898181	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	2898181	2898181	ADD1	4	A	A	C	15
AHNAK	79026	hgsc.bcm.edu	36	11	62057174	62057174	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	62057174	62057174	AHNAK	11	C	C	T	17
ALOXE3	59344	hgsc.bcm.edu	36	17	7961899	7961899	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7961899	7961899	ALOXE3	17	G	G	T	37
ANK3	288	hgsc.bcm.edu	36	10	61517940	61517940	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	61517940	61517940	ANK3	10	G	G	C	35
AP3S1	1176	hgsc.bcm.edu	36	5	115258697	115258699	+	In_Frame_Del	DEL	ATT	ATT	-	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	ATT	ATT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	115258697	115258699	AP3S1	5	ATT	ATT	-	8
ATP13A4	84239	hgsc.bcm.edu	36	3	194693626	194693626	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	194693626	194693626	ATP13A4	3	C	C	A	25
AVPR2	554	hgsc.bcm.edu	36	X	152824648	152824657	+	Frame_Shift_Del	DEL	CCTTCTCGCT	CCTTCTCGCT	-	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	CCTTCTCGCT	CCTTCTCGCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	152824648	152824657	AVPR2	23	CCTTCTCGCT	CCTTCTCGCT	-	26
B4GALNT4	338707	hgsc.bcm.edu	36	11	370167	370167	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	370167	370167	B4GALNT4	11	T	T	C	54
BMP2K	55589	hgsc.bcm.edu	36	4	80005744	80005744	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	80005744	80005744	BMP2K	4	T	T	C	49
BOC	91653	hgsc.bcm.edu	36	3	114484983	114484983	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	114484983	114484983	BOC	3	C	C	A	18
C12orf63	374467	hgsc.bcm.edu	36	12	95674375	95674375	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	95674375	95674375	C12orf63	12	G	G	C	33
C19orf44	84167	hgsc.bcm.edu	36	19	16481461	16481463	+	In_Frame_Del	DEL	AGC	AGC	-	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	AGC	AGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	16481461	16481463	C19orf44	19	AGC	AGC	-	11
C19orf6	91304	hgsc.bcm.edu	36	19	962130	962130	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	962130	962130	C19orf6	19	T	T	-	55
C1orf101	257044	hgsc.bcm.edu	36	1	242813826	242813826	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	242813826	242813826	C1orf101	1	C	C	A	18
C4A	720	hgsc.bcm.edu	36	6	32104549	32104549	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32104549	32104549	C4A	6	A	A	C	7
C6orf125	84300	hgsc.bcm.edu	36	6	33776262	33776262	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33776262	33776262	C6orf125	6	G	G	A	37
CACNA1F	778	hgsc.bcm.edu	36	X	48971729	48971729	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48971729	48971729	CACNA1F	23	G	G	C	48
CAMSAP1L1	23271	hgsc.bcm.edu	36	1	199084781	199084781	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	199084781	199084781	CAMSAP1L1	1	G	G	T	35
CCDC39	339829	hgsc.bcm.edu	36	3	181848716	181848716	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	181848716	181848716	CCDC39	3	T	T	A	60
CCDC57	284001	hgsc.bcm.edu	36	17	77745287	77745287	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	77745287	77745287	CCDC57	17	T	T	G	56
CCDC87	55231	hgsc.bcm.edu	36	11	66116013	66116014	+	Frame_Shift_Del	DEL	CC	CC	-	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	66116013	66116014	CCDC87	11	CC	CC	-	26
CDK1	983	hgsc.bcm.edu	36	10	62209967	62209967	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	62209967	62209967	CDK1	10	G	G	A	44
ARHGAP31	57514	hgsc.bcm.edu	36	3	120616273	120616273	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	120616273	120616273	ARHGAP31	3	G	G	C	44
CHD4	1108	hgsc.bcm.edu	36	12	6575524	6575524	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6575524	6575524	CHD4	12	G	G	C	38
CHUK	1147	hgsc.bcm.edu	36	10	101968553	101968553	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	101968553	101968553	CHUK	10	T	T	G	62
CLEC16A	23274	hgsc.bcm.edu	36	16	10972560	10972560	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	10972560	10972560	CLEC16A	16	A	A	G	13
COBL	23242	hgsc.bcm.edu	36	7	51063355	51063355	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	51063355	51063355	COBL	7	G	G	T	36
COL6A6	131873	hgsc.bcm.edu	36	3	131823372	131823380	+	In_Frame_Del	DEL	AGGAGAGGC	AGGAGAGGC	-	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	AGGAGAGGC	AGGAGAGGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	131823372	131823380	COL6A6	3	AGGAGAGGC	AGGAGAGGC	-	11
CPT2	1376	hgsc.bcm.edu	36	1	53448728	53448728	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53448728	53448728	CPT2	1	G	G	C	34
CYP11B2	1585	hgsc.bcm.edu	36	8	143993485	143993485	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	143993485	143993485	CYP11B2	8	T	T	-	51
DLEC1	9940	hgsc.bcm.edu	36	3	38114134	38114134	+	Splice_Site_SNP	SNP	T	T	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	38114134	38114134	DLEC1	3	T	T	A	59
DUOX2	50506	hgsc.bcm.edu	36	15	43185225	43185225	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43185225	43185225	DUOX2	15	C	C	T	29
DZIP1	22873	hgsc.bcm.edu	36	13	95091582	95091582	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	95091582	95091582	DZIP1	13	G	G	A	34
ELFN2	114794	hgsc.bcm.edu	36	22	36100588	36100588	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	36100588	36100588	ELFN2	22	C	C	A	21
EPN2	22905	hgsc.bcm.edu	36	17	19155997	19155997	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	19155997	19155997	EPN2	17	A	A	T	12
FANCA	2175	hgsc.bcm.edu	36	16	88342636	88342636	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	88342636	88342636	FANCA	16	T	T	C	55
FBXO25	26260	hgsc.bcm.edu	36	8	408740	408740	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	408740	408740	FBXO25	8	C	C	A	26
FLG2	388698	hgsc.bcm.edu	36	1	150590163	150590163	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	150590163	150590163	FLG2	1	T	T	C	59
FLNB	2317	hgsc.bcm.edu	36	3	58083926	58083926	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	58083926	58083926	FLNB	3	A	A	C	14
FRS3	10817	hgsc.bcm.edu	36	6	41848568	41848568	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41848568	41848568	FRS3	6	G	G	A	39
GATA5	140628	hgsc.bcm.edu	36	20	60473875	60473875	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	60473875	60473875	GATA5	20	G	G	C	47
GGA3	23163	hgsc.bcm.edu	36	17	70747108	70747108	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	70747108	70747108	GGA3	17	T	T	A	62
GIMAP7	168537	hgsc.bcm.edu	36	7	149848540	149848540	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	149848540	149848540	GIMAP7	7	T	T	A	59
GLRA3	8001	hgsc.bcm.edu	36	4	175946608	175946608	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	175946608	175946608	GLRA3	4	C	C	G	29
GRIN2A	2903	hgsc.bcm.edu	36	16	9765235	9765235	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	9765235	9765235	GRIN2A	16	T	T	A	59
HDAC6	10013	hgsc.bcm.edu	36	X	48548869	48548869	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48548869	48548869	HDAC6	23	T	T	G	64
IGHMBP2	3508	hgsc.bcm.edu	36	11	68453341	68453341	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	68453341	68453341	IGHMBP2	11	C	C	T	26
IL17RD	54756	hgsc.bcm.edu	36	3	57110354	57110354	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	57110354	57110354	IL17RD	3	G	G	-	39
INTS9	55756	hgsc.bcm.edu	36	8	28681685	28681685	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28681685	28681685	INTS9	8	A	A	T	11
INVS	27130	hgsc.bcm.edu	36	9	102055116	102055116	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102055116	102055116	INVS	9	C	C	G	29
IRAK3	11213	hgsc.bcm.edu	36	12	64924587	64924587	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	64924587	64924587	IRAK3	12	G	G	T	47
ITGA2B	3674	hgsc.bcm.edu	36	17	39808546	39808546	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39808546	39808546	ITGA2B	17	C	C	A	27
KIAA0195	9772	hgsc.bcm.edu	36	17	71002644	71002644	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	71002644	71002644	KIAA0195	17	C	C	G	26
KIAA0430	9665	hgsc.bcm.edu	36	16	15637141	15637141	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	15637141	15637141	KIAA0430	16	C	C	A	22
KIAA0430	9665	hgsc.bcm.edu	36	16	15637147	15637147	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	15637147	15637147	KIAA0430	16	G	G	A	34
KIAA0430	9665	hgsc.bcm.edu	36	16	15637503	15637506	+	Frame_Shift_Del	DEL	CATT	CATT	-	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	CATT	CATT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	15637503	15637506	KIAA0430	16	CATT	CATT	-	25
KIAA0494	9813	hgsc.bcm.edu	36	1	46956331	46956331	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	46956331	46956331	KIAA0494	1	C	C	T	32
KIF5A	3798	hgsc.bcm.edu	36	12	56261522	56261522	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	56261522	56261522	KIF5A	12	C	C	G	18
KTI12	112970	hgsc.bcm.edu	36	1	52271160	52271160	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	52271160	52271160	KTI12	1	C	C	A	28
LDOC1L	84247	hgsc.bcm.edu	36	22	43271543	43271543	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	43271543	43271543	LDOC1L	22	G	G	-	38
LRP10	26020	hgsc.bcm.edu	36	14	22414700	22414700	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	22414700	22414700	LRP10	14	C	C	G	27
MCM3	4172	hgsc.bcm.edu	36	6	52246522	52246522	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	52246522	52246522	MCM3	6	G	G	A	46
MCM3AP	8888	hgsc.bcm.edu	36	21	46487232	46487233	+	Frame_Shift_Ins	INS	-	-	GG	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	46487232	46487233	MCM3AP	21	-	-	GG	61
MEIS2	4212	hgsc.bcm.edu	36	15	35175832	35175832	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35175832	35175832	MEIS2	15	C	C	T	19
MGA	23269	hgsc.bcm.edu	36	15	39846076	39846076	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39846076	39846076	MGA	15	A	A	C	5
MS4A3	932	hgsc.bcm.edu	36	11	59586643	59586643	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	59586643	59586643	MS4A3	11	G	G	T	43
MYO9A	4649	hgsc.bcm.edu	36	15	69909696	69909696	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	69909696	69909696	MYO9A	15	C	C	T	19
NBPF7	343505	hgsc.bcm.edu	36	1	120183350	120183350	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	120183350	120183350	NBPF7	1	T	T	A	50
OR8B4	283162	hgsc.bcm.edu	36	11	123799137	123799137	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	123799137	123799137	OR8B4	11	C	C	T	18
PCCB	5096	hgsc.bcm.edu	36	3	137531521	137531535	+	In_Frame_Del	DEL	AACGTCCTTGGAGAA	AACGTCCTTGGAGAA	-	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	AACGTCCTTGGAGAA	AACGTCCTTGGAGAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	137531521	137531535	PCCB	3	AACGTCCTTGGAGAA	AACGTCCTTGGAGAA	-	5
CDHR2	54825	hgsc.bcm.edu	36	5	175928408	175928408	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	175928408	175928408	CDHR2	5	G	G	T	34
PHACTR1	221692	hgsc.bcm.edu	36	6	12857973	12857973	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	12857973	12857973	PHACTR1	6	T	T	C	54
PKN1	5585	hgsc.bcm.edu	36	19	14441799	14441799	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	14441799	14441799	PKN1	19	G	G	T	35
PLD3	23646	hgsc.bcm.edu	36	19	45575839	45575839	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	45575839	45575839	PLD3	19	C	C	T	30
PLXNB2	23654	hgsc.bcm.edu	36	22	49063285	49063285	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49063285	49063285	PLXNB2	22	G	G	C	39
PPP1R9A	55607	hgsc.bcm.edu	36	7	94578512	94578512	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	94578512	94578512	PPP1R9A	7	C	C	G	29
PPP2R5B	5526	hgsc.bcm.edu	36	11	64455654	64455654	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	64455654	64455654	PPP2R5B	11	G	G	A	35
PRAGMIN	157285	hgsc.bcm.edu	36	8	8222882	8222882	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	8222882	8222882	PRAGMIN	8	C	C	T	29
PRDM15	63977	hgsc.bcm.edu	36	21	42128699	42128699	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	42128699	42128699	PRDM15	21	C	C	T	30
PTPRT	11122	hgsc.bcm.edu	36	20	40223576	40223588	+	Frame_Shift_Del	DEL	GCTCCCCGCGGCT	GCTCCCCGCGGCT	-	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	GCTCCCCGCGGCT	GCTCCCCGCGGCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	40223576	40223588	PTPRT	20	GCTCCCCGCGGCT	GCTCCCCGCGGCT	-	34
RAB2B	84932	hgsc.bcm.edu	36	14	21001674	21001674	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	21001674	21001674	RAB2B	14	G	G	C	48
RAPGEF1	2889	hgsc.bcm.edu	36	9	133449611	133449611	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	133449611	133449611	RAPGEF1	9	T	T	C	62
RIC8B	55188	hgsc.bcm.edu	36	12	105778242	105778242	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	105778242	105778242	RIC8B	12	T	T	G	63
RNF168	165918	hgsc.bcm.edu	36	3	197714439	197714439	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	197714439	197714439	RNF168	3	C	C	G	21
RYR2	6262	hgsc.bcm.edu	36	1	236014831	236014831	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	236014831	236014831	RYR2	1	A	A	G	4
SGSM2	9905	hgsc.bcm.edu	36	17	2217383	2217383	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2217383	2217383	SGSM2	17	G	G	A	41
SH3GLB2	56904	hgsc.bcm.edu	36	9	130816594	130816594	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	130816594	130816594	SH3GLB2	9	G	G	C	38
SLC16A13	201232	hgsc.bcm.edu	36	17	6882635	6882635	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6882635	6882635	SLC16A13	17	G	G	A	45
SLC29A1	2030	hgsc.bcm.edu	36	6	44305329	44305329	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44305329	44305329	SLC29A1	6	C	C	T	30
SLC5A1	6523	hgsc.bcm.edu	36	22	30825226	30825226	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	30825226	30825226	SLC5A1	22	C	C	G	29
SLC7A10	56301	hgsc.bcm.edu	36	19	38394218	38394218	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	38394218	38394218	SLC7A10	19	A	A	G	4
SPHKAP	80309	hgsc.bcm.edu	36	2	228591546	228591546	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	228591546	228591546	SPHKAP	2	C	C	T	23
SRP72	6731	hgsc.bcm.edu	36	4	57048888	57048888	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	57048888	57048888	SRP72	4	A	A	C	8
STAB2	55576	hgsc.bcm.edu	36	12	102677123	102677123	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102677123	102677123	STAB2	12	T	T	G	55
TBCCD1	55171	hgsc.bcm.edu	36	3	187759049	187759049	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	187759049	187759049	TBCCD1	3	C	C	A	20
THADA	63892	hgsc.bcm.edu	36	2	43657867	43657867	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43657867	43657867	THADA	2	G	G	A	37
THADA	63892	hgsc.bcm.edu	36	2	43657870	43657870	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43657870	43657870	THADA	2	G	G	A	34
TMEM48	55706	hgsc.bcm.edu	36	1	54035264	54035264	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54035264	54035264	TMEM48	1	A	A	T	14
TMPRSS3	64699	hgsc.bcm.edu	36	21	42676377	42676377	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	42676377	42676377	TMPRSS3	21	C	C	A	28
TOM1	10043	hgsc.bcm.edu	36	22	34060380	34060380	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	34060380	34060380	TOM1	22	G	G	A	41
TP53	7157	hgsc.bcm.edu	36	17	7519255	7519255	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	7519255	7519255	TP53	17	A	A	C	2
TPO	7173	hgsc.bcm.edu	36	2	1486754	1486754	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1486754	1486754	TPO	2	A	A	T	6
TRIM42	287015	hgsc.bcm.edu	36	3	141889473	141889473	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	141889473	141889473	TRIM42	3	T	T	C	59
TRIP12	9320	hgsc.bcm.edu	36	2	230432098	230432098	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	230432098	230432098	TRIP12	2	C	C	T	26
TYK2	7297	hgsc.bcm.edu	36	19	10337311	10337311	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10337311	10337311	TYK2	19	A	A	T	6
UBQLN3	50613	hgsc.bcm.edu	36	11	5485713	5485713	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5485713	5485713	UBQLN3	11	C	C	T	22
USO1	8615	hgsc.bcm.edu	36	4	76927369	76927369	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	76927369	76927369	USO1	4	T	T	C	50
USP49	25862	hgsc.bcm.edu	36	6	41881358	41881358	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41881358	41881358	USP49	6	G	G	T	46
USP54	159195	hgsc.bcm.edu	36	10	74947312	74947312	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	74947312	74947312	USP54	10	C	C	T	29
ZEB2	9839	hgsc.bcm.edu	36	2	144872888	144872888	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	144872888	144872888	ZEB2	2	C	C	T	24
ZNF460	10794	hgsc.bcm.edu	36	19	62494304	62494304	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	62494304	62494304	ZNF460	19	C	C	A	26
ZNF546	339327	hgsc.bcm.edu	36	19	45205058	45205058	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	45205058	45205058	ZNF546	19	C	C	G	30
ZNF573	126231	hgsc.bcm.edu	36	19	42922315	42922315	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	42922315	42922315	ZNF573	19	T	T	C	62
ZNF780B	163131	hgsc.bcm.edu	36	19	45233535	45233535	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	45233535	45233535	ZNF780B	19	A	A	C	6
ZNF823	55552	hgsc.bcm.edu	36	19	11694208	11694208	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01	TCGA-13-0906-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11694208	11694208	ZNF823	19	T	T	C	60