Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context TP53 7157 genome.wustl.edu 36 17 7517839 7517839 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7517839 7517839 TP53 17 C C T 17 PRSS55 203074 genome.wustl.edu 36 8 10424530 10424530 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 10424530 10424530 PRSS55 8 G G T 35 PTPRO 5800 genome.wustl.edu 36 12 15545856 15545856 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15545856 15545856 PTPRO 12 G G A 40 PRDM9 56979 genome.wustl.edu 36 5 23562913 23562913 + Silent SNP T T C novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 23562913 23562913 PRDM9 5 T T C 54 ARNTL2 56938 genome.wustl.edu 36 12 27444781 27444781 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27444781 27444781 ARNTL2 12 T T C 55 LTBP1 4052 genome.wustl.edu 36 2 33331329 33331329 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33331329 33331329 LTBP1 2 C C T 32 C6orf81 221481 genome.wustl.edu 36 6 35823062 35823062 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35823062 35823062 C6orf81 6 C C T 19 ADAMTS20 80070 genome.wustl.edu 36 12 42107469 42107469 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42107469 42107469 ADAMTS20 12 G G C 34 ZNF295 49854 genome.wustl.edu 36 21 42284519 42284519 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42284519 42284519 ZNF295 21 T T G 59 B4GALT2 8704 genome.wustl.edu 36 1 44223557 44223557 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44223557 44223557 B4GALT2 1 T T G 64 TOM1L1 10040 genome.wustl.edu 36 17 50348154 50348154 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50348154 50348154 TOM1L1 17 G G A 36 LOC100131971 genome.wustl.edu 36 18 55579947 55579947 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55579947 55579947 LOC100131971 18 G G A 37 LILRB4 11006 genome.wustl.edu 36 19 59871171 59871171 + Silent SNP C C T novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 59871171 59871171 LILRB4 19 C C T 19 ZNF711 7552 genome.wustl.edu 36 X 84406028 84406028 + Silent SNP G G A novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 84406028 84406028 ZNF711 23 G G A 44 ATP2B1 490 genome.wustl.edu 36 12 88519315 88519315 + Silent SNP T T C novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 88519315 88519315 ATP2B1 12 T T C 60 GPR98 84059 genome.wustl.edu 36 5 89961060 89961060 + Nonsense_Mutation SNP T T A novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 89961060 89961060 GPR98 5 T T A 61 ADRA2B 151 genome.wustl.edu 36 2 96145015 96145015 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 96145015 96145015 ADRA2B 2 G G A 40 KLHL32 114792 genome.wustl.edu 36 6 97639767 97639767 + Silent SNP C C T novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 97639767 97639767 KLHL32 6 C C T 18 ASCC3 10973 genome.wustl.edu 36 6 101161625 101161625 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101161625 101161625 ASCC3 6 T T C 50 DMBT1 1755 genome.wustl.edu 36 10 124380761 124380761 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124380761 124380761 DMBT1 10 G G A 40 MED12L 116931 genome.wustl.edu 36 3 152588413 152588413 + Silent SNP C C T novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 152588413 152588413 MED12L 3 C C T 19 PYHIN1 149628 genome.wustl.edu 36 1 157181450 157181450 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 157181450 157181450 PYHIN1 1 C C G 29 BCHE 590 genome.wustl.edu 36 3 167030121 167030121 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 167030121 167030121 BCHE 3 C C A 25 RARS 5917 genome.wustl.edu 36 5 167861653 167861653 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 167861653 167861653 RARS 5 G G C 35 LRRC33 375387 genome.wustl.edu 36 3 197871893 197871893 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 197871893 197871893 LRRC33 3 G G A 38 SFMBT2 57713 genome.wustl.edu 36 10 7245767 7245767 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7245767 7245767 SFMBT2 10 C C A 20 ANKRD29 147463 genome.wustl.edu 36 18 19468108 19468108 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19468108 19468108 ANKRD29 18 C C T 23 HCRTR2 3062 genome.wustl.edu 36 6 55227992 55227992 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0910-01 TCGA-13-0910-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55227992 55227992 HCRTR2 6 C C T 27