Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context MACF1 23499 broad.mit.edu 36 1 39571992 39571992 + Missense_Mutation SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39571992 39571992 MACF1 1 G G A 46 PODN 127435 broad.mit.edu 36 1 53315557 53315557 + Missense_Mutation SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53315557 53315557 PODN 1 G G A 38 BEND7 222389 broad.mit.edu 36 10 13581899 13581899 + Silent SNP C C T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 13581899 13581899 BEND7 10 C C T 19 RET 5979 broad.mit.edu 36 10 42929961 42929961 + Missense_Mutation SNP C C T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 42929961 42929961 RET 10 C C T 19 ACCSL 390110 broad.mit.edu 36 11 44038023 44038023 + Missense_Mutation SNP T T G novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44038023 44038023 ACCSL 11 T T G 60 AGBL2 79841 broad.mit.edu 36 11 47664083 47664083 + Missense_Mutation SNP G G T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47664083 47664083 AGBL2 11 G G T 37 AAAS 8086 broad.mit.edu 36 12 51987696 51987696 + Silent SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 51987696 51987696 AAAS 12 G G A 42 ATP6V0A2 23545 broad.mit.edu 36 12 122799083 122799083 + Missense_Mutation SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122799083 122799083 ATP6V0A2 12 G G A 35 ATP11A 23250 broad.mit.edu 36 13 112560572 112560572 + Silent SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 112560572 112560572 ATP11A 13 G G A 41 ZFYVE26 23503 broad.mit.edu 36 14 67343890 67343890 + Silent SNP C C T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 67343890 67343890 ZFYVE26 14 C C T 31 C15orf42 90381 broad.mit.edu 36 15 87920451 87920451 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 87920451 87920451 C15orf42 15 G G A 43 TRAF7 84231 broad.mit.edu 36 16 2163968 2163968 + Missense_Mutation SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2163968 2163968 TRAF7 16 G G A 42 A2BP1 54715 broad.mit.edu 36 16 7620669 7620669 + Missense_Mutation SNP T T C novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7620669 7620669 A2BP1 16 T T C 56 NFATC2IP 84901 broad.mit.edu 36 16 28873481 28873482 + Nonsense_Mutation DNP AG AG CT novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation DNP 28873481 28873482 NFATC2IP 16 AG AG CT 3 TP53 7157 broad.mit.edu 36 17 7519119 7519119 + Missense_Mutation SNP T T C novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7519119 7519119 TP53 17 T T C 51 GGNBP2 79893 broad.mit.edu 36 17 32017611 32017611 + Silent SNP G G T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 32017611 32017611 GGNBP2 17 G G T 48 KIF18B 146909 broad.mit.edu 36 17 40365571 40365571 + Missense_Mutation SNP C C T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40365571 40365571 KIF18B 17 C C T 32 DCC 1630 broad.mit.edu 36 18 49086015 49086015 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 49086015 49086015 DCC 18 C C T 31 ONECUT2 9480 broad.mit.edu 36 18 53294727 53294727 + Missense_Mutation SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53294727 53294727 ONECUT2 18 G G A 38 RFXANK 8625 broad.mit.edu 36 19 19170992 19170992 + Missense_Mutation SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19170992 19170992 RFXANK 19 G G A 37 ZNF585B 92285 broad.mit.edu 36 19 42369890 42369890 + Missense_Mutation SNP T T C novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 42369890 42369890 ZNF585B 19 T T C 49 MFSD2B 388931 broad.mit.edu 36 2 24098113 24098113 + Splice_Site_SNP SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 24098113 24098113 MFSD2B 2 G G A 44 FAM179A 165186 broad.mit.edu 36 2 29074585 29074585 + Missense_Mutation SNP C C T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29074585 29074585 FAM179A 2 C C T 23 NRXN1 9378 broad.mit.edu 36 2 50619171 50619171 + Missense_Mutation SNP C C T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50619171 50619171 NRXN1 2 C C T 28 UXS1 80146 broad.mit.edu 36 2 106128237 106128237 + Missense_Mutation SNP C C G novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 106128237 106128237 UXS1 2 C C G 19 CNTNAP5 129684 broad.mit.edu 36 2 125388238 125388238 + Missense_Mutation SNP A A C novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 125388238 125388238 CNTNAP5 2 A A C 3 C20orf3 57136 broad.mit.edu 36 20 24897674 24897674 + Missense_Mutation SNP C C T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24897674 24897674 C20orf3 20 C C T 30 TRIOBP 11078 broad.mit.edu 36 22 36449344 36449344 + Missense_Mutation SNP T T C novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36449344 36449344 TRIOBP 22 T T C 54 DVL3 1857 broad.mit.edu 36 3 185365317 185365317 + Missense_Mutation SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 185365317 185365317 DVL3 3 G G A 37 CPN2 1370 broad.mit.edu 36 3 195544077 195544077 + Silent SNP C C G novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 195544077 195544077 CPN2 3 C C G 23 TNK2 10188 broad.mit.edu 36 3 197079665 197079665 + Missense_Mutation SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 197079665 197079665 TNK2 3 G G A 40 UGT2A1 10941 broad.mit.edu 36 4 70547827 70547827 + Missense_Mutation SNP T T G novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70547827 70547827 UGT2A1 4 T T G 54 MUC7 4589 broad.mit.edu 36 4 71381235 71381235 + Missense_Mutation SNP C C G novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71381235 71381235 MUC7 4 C C G 30 RAD1 5810 broad.mit.edu 36 5 34950670 34950670 + Missense_Mutation SNP T T C novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34950670 34950670 RAD1 5 T T C 59 WDR70 55100 broad.mit.edu 36 5 37515767 37515767 + Missense_Mutation SNP A A T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37515767 37515767 WDR70 5 A A T 3 DMGDH 29958 broad.mit.edu 36 5 78395229 78395229 + Missense_Mutation SNP T T C novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 78395229 78395229 DMGDH 5 T T C 54 FBN2 2201 broad.mit.edu 36 5 127713044 127713044 + Silent SNP C C T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 127713044 127713044 FBN2 5 C C T 17 PCDHB13 56123 broad.mit.edu 36 5 140574459 140574460 + Missense_Mutation DNP GA GA CG novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 140574459 140574460 PCDHB13 5 GA GA CG 33 GMNN 51053 broad.mit.edu 36 6 24892316 24892316 + Missense_Mutation SNP G G T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24892316 24892316 GMNN 6 G G T 41 BRD2 6046 broad.mit.edu 36 6 33052440 33052440 + Missense_Mutation SNP C C T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 33052440 33052440 BRD2 6 C C T 27 MRPL14 64928 broad.mit.edu 36 6 44189821 44189821 + Missense_Mutation SNP G G T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44189821 44189821 MRPL14 6 G G T 47 DDX43 55510 broad.mit.edu 36 6 74161589 74161589 + Silent SNP C C T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 74161589 74161589 DDX43 6 C C T 27 RRAGD 58528 broad.mit.edu 36 6 90134616 90134616 + Missense_Mutation SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 90134616 90134616 RRAGD 6 G G A 39 DBNL 28988 broad.mit.edu 36 7 44066903 44066904 + Missense_Mutation DNP GA GA TG novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 44066903 44066904 DBNL 7 GA GA TG 37 ABCB1 5243 broad.mit.edu 36 7 86982512 86982512 + Missense_Mutation SNP G G A novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 86982512 86982512 ABCB1 7 G G A 38 CNTNAP2 26047 broad.mit.edu 36 7 147500486 147500486 + Missense_Mutation SNP G G T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 147500486 147500486 CNTNAP2 7 G G T 41 CNBD1 168975 broad.mit.edu 36 8 88021014 88021014 + Missense_Mutation SNP A A G novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 88021014 88021014 CNBD1 8 A A G 7 FAM135B 51059 broad.mit.edu 36 8 139234445 139234445 + Silent SNP A A G novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 139234445 139234445 FAM135B 8 A A G 8 TBC1D2 55357 broad.mit.edu 36 9 100046197 100046197 + Missense_Mutation SNP G G C novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100046197 100046197 TBC1D2 9 G G C 43 HTR2C 3358 broad.mit.edu 36 X 114048035 114048035 + Missense_Mutation SNP C C T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 114048035 114048035 HTR2C 23 C C T 24 DOCK11 139818 broad.mit.edu 36 X 117693958 117693958 + Missense_Mutation SNP G G T novel Unknown TCGA-13-2060-01 TCGA-13-2060-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 117693958 117693958 DOCK11 23 G G T 41