Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context SPEN 23013 broad.mit.edu 36 1 16132924 16132924 + Silent SNP G G C novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 G C G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 16132924 16132924 SPEN 1 G G C 45 CLCNKA 1187 broad.mit.edu 36 1 16232309 16232309 + Silent SNP A A C novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 16232309 16232309 CLCNKA 1 A A C 7 CACNA1C 775 broad.mit.edu 36 12 2658978 2658978 + Silent SNP G G A novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 2658978 2658978 CACNA1C 12 G G A 39 ARF6 382 broad.mit.edu 36 14 49430725 49430725 + Missense_Mutation SNP A A G novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49430725 49430725 ARF6 14 A A G 1 SPTB 6710 broad.mit.edu 36 14 64329966 64329966 + Missense_Mutation SNP G G A novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64329966 64329966 SPTB 14 G G A 46 BAHCC1 57597 broad.mit.edu 36 17 77045297 77045297 + Missense_Mutation SNP G G T novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 77045297 77045297 BAHCC1 17 G G T 35 MUC16 94025 broad.mit.edu 36 19 8927447 8927447 + Missense_Mutation SNP G G C novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 G C G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 8927447 8927447 MUC16 19 G G C 33 COL5A3 50509 broad.mit.edu 36 19 9952504 9952504 + Missense_Mutation SNP G G A novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 9952504 9952504 COL5A3 19 G G A 42 ZNF507 22847 broad.mit.edu 36 19 37536140 37536140 + Silent SNP C C T novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 37536140 37536140 ZNF507 19 C C T 21 MEGF8 1954 broad.mit.edu 36 19 47546353 47546353 + Missense_Mutation SNP C C T novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47546353 47546353 MEGF8 19 C C T 31 PPP6R1 22870 broad.mit.edu 36 19 60439947 60439947 + Missense_Mutation SNP C C T novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60439947 60439947 PPP6R1 19 C C T 29 FZD7 8324 broad.mit.edu 36 2 202608783 202608783 + Missense_Mutation SNP G G A novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 202608783 202608783 FZD7 2 G G A 38 NOP56 10528 broad.mit.edu 36 20 2584148 2584148 + Silent SNP G G A novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 2584148 2584148 NOP56 20 G G A 44 XIRP1 165904 broad.mit.edu 36 3 39204122 39204122 + Missense_Mutation SNP C C T novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 39204122 39204122 XIRP1 3 C C T 26 DUSP7 1849 broad.mit.edu 36 3 52059944 52059944 + Missense_Mutation SNP G G A novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 52059944 52059944 DUSP7 3 G G A 37 HADH 3033 broad.mit.edu 36 4 109174914 109174914 + Silent SNP G G A novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 109174914 109174914 HADH 4 G G A 33 SFRP2 6423 broad.mit.edu 36 4 154922237 154922237 + Missense_Mutation SNP G G A novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 154922237 154922237 SFRP2 4 G G A 37 TMEM200A 114801 broad.mit.edu 36 6 130804293 130804293 + Missense_Mutation SNP C C G novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 130804293 130804293 TMEM200A 6 C C G 28 PCLO 27445 broad.mit.edu 36 7 82423663 82423663 + Silent SNP T T C novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 82423663 82423663 PCLO 7 T T C 56 RBM28 55131 broad.mit.edu 36 7 127758150 127758150 + Missense_Mutation SNP A A C novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 127758150 127758150 RBM28 7 A A C 16 JPH1 56704 broad.mit.edu 36 8 75319448 75319448 + Missense_Mutation SNP G G A novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75319448 75319448 JPH1 8 G G A 41 COLEC10 10584 broad.mit.edu 36 8 120187264 120187264 + Missense_Mutation SNP G G A novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 120187264 120187264 COLEC10 8 G G A 40 GTF3C4 9329 broad.mit.edu 36 9 134543966 134543966 + Missense_Mutation SNP A A G novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 134543966 134543966 GTF3C4 9 A A G 16 TP53 7157 broad.mit.edu 36 17 7520099 7520099 + Missense_Mutation SNP C C G novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Missense_Mutation SNP 7520099 7520099 TP53 17 C C G 22 KIF26B 55083 broad.mit.edu 36 1 243832597 243832612 + Frame_Shift_Del DEL CTTGTACGATCCCCTG - CTTGTACGATCCCCTG novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 243832597 243832612 KIF26B 1 CTTGTACGATCCCCTG - CTTGTACGATCCCCTG 24 MYOF 26509 broad.mit.edu 36 10 95124664 95124665 + Frame_Shift_Ins INS - T - novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 95124664 95124665 MYOF 10 - T - 48 CDK12 51755 broad.mit.edu 36 17 34925519 34925520 + Frame_Shift_Ins INS - G - novel Unknown TCGA-20-0987-01 TCGA-20-0987-10 G - - - Unknown Valid Somatic Phase_I Capture Illumina GAIIx Broad Frame_Shift_Ins INS 34925519 34925520 CDK12 17 - G - 63