Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
AKR1C4	1109	hgsc.bcm.edu	36	10	5237796	5237796	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5237796	5237796	AKR1C4	10	A	A	C	11
ATP13A5	344905	hgsc.bcm.edu	36	3	194525413	194525413	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	194525413	194525413	ATP13A5	3	C	C	T	29
BRCA1	672	hgsc.bcm.edu	36	17	38498636	38498636	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	38498636	38498636	BRCA1	17	C	C	-	30
C16orf5	29965	hgsc.bcm.edu	36	16	4502578	4502578	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	4502578	4502578	C16orf5	16	C	C	A	25
C16orf70	80262	hgsc.bcm.edu	36	16	65738489	65738490	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	65738489	65738490	C16orf70	16	-	-	C	42
C5orf22	55322	hgsc.bcm.edu	36	5	31581529	31581529	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31581529	31581529	C5orf22	5	C	C	T	24
CNGB3	54714	hgsc.bcm.edu	36	8	87748405	87748405	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	87748405	87748405	CNGB3	8	C	C	T	27
DDIT3	1649	hgsc.bcm.edu	36	12	56197027	56197027	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	56197027	56197027	DDIT3	12	C	T	T	22
DUSP19	142679	hgsc.bcm.edu	36	2	183651997	183651997	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	183651997	183651997	DUSP19	2	A	A	G	4
ERCC6L	54821	hgsc.bcm.edu	36	X	71343000	71343000	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	71343000	71343000	ERCC6L	23	G	G	A	43
HHIPL2	79802	hgsc.bcm.edu	36	1	220783875	220783875	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	220783875	220783875	HHIPL2	1	G	G	A	41
IL23R	149233	hgsc.bcm.edu	36	1	67421114	67421114	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	67421114	67421114	IL23R	1	A	A	T	7
KIAA2026	158358	hgsc.bcm.edu	36	9	5913031	5913031	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5913031	5913031	KIAA2026	9	C	C	A	25
MTF2	22823	hgsc.bcm.edu	36	1	93374936	93374936	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	93374936	93374936	MTF2	1	G	G	T	48
NAT10	55226	hgsc.bcm.edu	36	11	34114772	34114772	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	34114772	34114772	NAT10	11	G	G	A	34
OTOF	9381	hgsc.bcm.edu	36	2	26549843	26549843	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	26549843	26549843	OTOF	2	A	A	-	10
PORCN	64840	hgsc.bcm.edu	36	X	48259087	48259087	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48259087	48259087	PORCN	23	G	G	A	42
PTK2	5747	hgsc.bcm.edu	36	8	141898209	141898209	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	141898209	141898209	PTK2	8	C	C	A	17
SETDB2	83852	hgsc.bcm.edu	36	13	48953233	48953233	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48953233	48953233	SETDB2	13	C	C	A	17
SRSF2IP	9169	hgsc.bcm.edu	36	12	44606752	44606756	+	Frame_Shift_Del	DEL	TTTTC	TTTTC	-	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	TTTTC	TTTTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	44606752	44606756	SRSF2IP	12	TTTTC	TTTTC	-	64
SLITRK1	114798	hgsc.bcm.edu	36	13	83353110	83353110	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	83353110	83353110	SLITRK1	13	G	G	T	47
TAF3	83860	hgsc.bcm.edu	36	10	8046891	8046891	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	8046891	8046891	TAF3	10	A	A	G	12
TMEM180	79847	hgsc.bcm.edu	36	10	104219743	104219743	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	104219743	104219743	TMEM180	10	G	G	C	36
TMPO	7112	hgsc.bcm.edu	36	12	97445894	97445894	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	97445894	97445894	TMPO	12	T	T	C	49
VILL	50853	hgsc.bcm.edu	36	3	38018307	38018308	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	38018307	38018308	VILL	3	-	-	C	34
YSK4	80122	hgsc.bcm.edu	36	2	135460621	135460621	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	135460621	135460621	YSK4	2	T	T	A	62
ZEB1	6935	hgsc.bcm.edu	36	10	31831307	31831307	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31831307	31831307	ZEB1	10	T	T	A	51
ZNF554	115196	hgsc.bcm.edu	36	19	2783405	2783405	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-23-1026-01	TCGA-23-1026-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	2783405	2783405	ZNF554	19	C	C	-	20