Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context ABCC1 4363 hgsc.bcm.edu 36 16 16037833 16037833 + Silent SNP G G A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 16037833 16037833 ABCC1 16 G G A 45 ACCSL 390110 hgsc.bcm.edu 36 11 44026255 44026255 + Silent SNP G G A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 44026255 44026255 ACCSL 11 G G A 33 CARNS1 57571 hgsc.bcm.edu 36 11 66947867 66947867 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 66947867 66947867 CARNS1 11 C C A 27 BBX 56987 hgsc.bcm.edu 36 3 108918169 108918169 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 108918169 108918169 BBX 3 T T C 53 BTBD9 114781 hgsc.bcm.edu 36 6 38669750 38669750 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 38669750 38669750 BTBD9 6 G G A 35 CAMK1 8536 hgsc.bcm.edu 36 3 9778325 9778325 + Silent SNP C C T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 9778325 9778325 CAMK1 3 C C T 23 CCL17 6361 hgsc.bcm.edu 36 16 56006603 56006603 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 56006603 56006603 CCL17 16 T T A 51 CCRL2 9034 hgsc.bcm.edu 36 3 46424640 46424640 + Silent SNP C C T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 46424640 46424640 CCRL2 3 C C T 27 COMMD5 28991 hgsc.bcm.edu 36 8 146047509 146047509 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 146047509 146047509 COMMD5 8 C C T 25 COMP 1311 hgsc.bcm.edu 36 19 18757323 18757324 + Frame_Shift_Ins INS - - GA novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 - - . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Ins INS 18757323 18757324 COMP 19 - - GA 43 CSPP1 79848 hgsc.bcm.edu 36 8 68268328 68268329 + Frame_Shift_Ins INS - - G novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 - - . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Ins INS 68268328 68268329 CSPP1 8 - - G 15 CYFIP1 23191 hgsc.bcm.edu 36 15 20515284 20515284 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 20515284 20515284 CYFIP1 15 G G A 37 DNAH5 1767 hgsc.bcm.edu 36 5 13816005 13816005 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 13816005 13816005 DNAH5 5 G G T 41 DNAH5 1767 hgsc.bcm.edu 36 5 13921012 13921012 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 13921012 13921012 DNAH5 5 C C A 28 DSCAM 1826 hgsc.bcm.edu 36 21 40336436 40336436 + Silent SNP A A G novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 A A . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 40336436 40336436 DSCAM 21 A A G 6 FRY 10129 hgsc.bcm.edu 36 13 31629510 31629510 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G G C G G Unknown Valid Somatic Phase_IV Capture 454_PCR_WGA . . SOLID Baylor Missense_Mutation SNP 31629510 31629510 FRY 13 G G C 33 GPR113 165082 hgsc.bcm.edu 36 2 26389455 26389455 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 26389455 26389455 GPR113 2 G G C 42 HAS2 3037 hgsc.bcm.edu 36 8 122710201 122710201 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C C A C C Unknown Valid Somatic Phase_IV Capture 454_PCR_WGA . . SOLID Baylor Missense_Mutation SNP 122710201 122710201 HAS2 8 C C A 22 IL16 3603 hgsc.bcm.edu 36 15 79359025 79359025 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 79359025 79359025 IL16 15 C C A 18 IL6R 3570 hgsc.bcm.edu 36 1 152687256 152687256 + Silent SNP G G T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 152687256 152687256 IL6R 1 G G T 48 IQGAP3 128239 hgsc.bcm.edu 36 1 154762923 154762923 + Silent SNP G G A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 154762923 154762923 IQGAP3 1 G G A 48 ITGA8 8516 hgsc.bcm.edu 36 10 15760749 15760749 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C C A C C Unknown Valid Somatic Phase_IV Capture Sanger_PCR_WGA . . SOLID Baylor Missense_Mutation SNP 15760749 15760749 ITGA8 10 C C A 30 KCNB1 3745 hgsc.bcm.edu 36 20 47424182 47424182 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 47424182 47424182 KCNB1 20 C C A 24 KIAA1841 84542 hgsc.bcm.edu 36 2 61168827 61168828 + Frame_Shift_Del DEL TG TG - novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 TG TG . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Del DEL 61168827 61168828 KIAA1841 2 TG TG - 55 KRT27 342574 hgsc.bcm.edu 36 17 36189533 36189534 + Frame_Shift_Ins INS - - A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 - - . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Ins INS 36189533 36189534 KRT27 17 - - A 57 LRP1 4035 hgsc.bcm.edu 36 12 55838612 55838612 + Nonsense_Mutation SNP C C A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C C A C C Unknown Valid Somatic Phase_IV Capture Sanger_PCR_WGA . . SOLID Baylor Nonsense_Mutation SNP 55838612 55838612 LRP1 12 C C A 20 LRRC36 55282 hgsc.bcm.edu 36 16 65962572 65962572 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 65962572 65962572 LRRC36 16 G G A 35 MAP3K10 4294 hgsc.bcm.edu 36 19 45412744 45412744 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 45412744 45412744 MAP3K10 19 G G A 38 MCCC2 64087 hgsc.bcm.edu 36 5 70936053 70936053 + Splice_Site_SNP SNP T T C novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 T T T C T T Unknown Valid Somatic Phase_IV Capture 454_PCR_WGA . . SOLID Baylor Splice_Site_SNP SNP 70936053 70936053 MCCC2 5 T T C 57 MFSD6 54842 hgsc.bcm.edu 36 2 191009562 191009562 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 191009562 191009562 MFSD6 2 T T G 64 MYEOV 26579 hgsc.bcm.edu 36 11 68820148 68820148 + Missense_Mutation SNP A A G rs17856376 Unknown TCGA-23-1028-01 TCGA-23-1028-10 A A . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 68820148 68820148 MYEOV 11 A A G 8 MYST4 23522 hgsc.bcm.edu 36 10 76451776 76451776 + Silent SNP C C T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 76451776 76451776 MYST4 10 C C T 26 MYST4 23522 hgsc.bcm.edu 36 10 76451912 76451914 + In_Frame_Del DEL GAA GAA - rs3217598 Unknown TCGA-23-1028-01 TCGA-23-1028-10 GAA GAA . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor In_Frame_Del DEL 76451912 76451914 MYST4 10 GAA GAA - 41 NCR2 9436 hgsc.bcm.edu 36 6 41412012 41412012 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 41412012 41412012 NCR2 6 G G C 45 NF1 4763 hgsc.bcm.edu 36 17 26678704 26678707 + Frame_Shift_Del DEL TCTT TCTT - novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 TCTT TCTT . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Del DEL 26678704 26678707 NF1 17 TCTT TCTT - 58 NSUN5P2 260294 hgsc.bcm.edu 36 7 72058325 72058329 + Frame_Shift_Del DEL GGTTC GGTTC - novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 GGTTC GGTTC . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Del DEL 72058325 72058329 NSUN5P2 7 GGTTC GGTTC - 47 OAS3 4940 hgsc.bcm.edu 36 12 111863798 111863798 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 111863798 111863798 OAS3 12 G G T 48 OR6T1 219874 hgsc.bcm.edu 36 11 123319595 123319595 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 123319595 123319595 OR6T1 11 C C T 27 PAFAH2 5051 hgsc.bcm.edu 36 1 26171773 26171773 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C C T C C Unknown Valid Somatic Phase_IV Capture 454_PCR_WGA . . SOLID Baylor Missense_Mutation SNP 26171773 26171773 PAFAH2 1 C C T 20 PHKG2 5261 hgsc.bcm.edu 36 16 30675919 30675919 + Silent SNP G G A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G G A G G Unknown Valid Somatic Phase_IV Capture 454_PCR_WGA . . SOLID Baylor Silent SNP 30675919 30675919 PHKG2 16 G G A 35 PION 54103 hgsc.bcm.edu 36 7 76788041 76788041 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 76788041 76788041 PION 7 C C T 20 PLXNC1 10154 hgsc.bcm.edu 36 12 93165974 93165974 + Silent SNP G G T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 93165974 93165974 PLXNC1 12 G G T 47 PRTN3 5657 hgsc.bcm.edu 36 19 798909 798909 + Silent SNP C C T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 798909 798909 PRTN3 19 C C T 22 RAD51 5888 hgsc.bcm.edu 36 15 38788604 38788604 + Nonsense_Mutation SNP C C T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Nonsense_Mutation SNP 38788604 38788604 RAD51 15 C C T 21 RAD9A 5883 hgsc.bcm.edu 36 11 66921256 66921256 + Silent SNP C C T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 66921256 66921256 RAD9A 11 C C T 19 RASAL1 8437 hgsc.bcm.edu 36 12 112050052 112050054 + In_Frame_Del DEL GTC GTC - novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 GTC GTC . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor In_Frame_Del DEL 112050052 112050054 RASAL1 12 GTC GTC - 48 RNF25 64320 hgsc.bcm.edu 36 2 219237067 219237067 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 219237067 219237067 RNF25 2 T T C 55 RP1-199H16.1 646851 hgsc.bcm.edu 36 22 37325838 37325838 + Frame_Shift_Del DEL G G - novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Del DEL 37325838 37325838 RP1-199H16.1 22 G G - 45 SIX6 4990 hgsc.bcm.edu 36 14 60046226 60046226 + Silent SNP C C T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 60046226 60046226 SIX6 14 C C T 30 SLCO6A1 133482 hgsc.bcm.edu 36 5 101737011 101737011 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 101737011 101737011 SLCO6A1 5 G G T 43 TAF1B 9014 hgsc.bcm.edu 36 2 9962475 9962475 + Frame_Shift_Del DEL G G - novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Del DEL 9962475 9962475 TAF1B 2 G G - 36 TOB1 10140 hgsc.bcm.edu 36 17 46296048 46296049 + Frame_Shift_Ins INS - - A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 - - . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Ins INS 46296048 46296049 TOB1 17 - - A 24 TOP2A 7153 hgsc.bcm.edu 36 17 35822744 35822745 + Frame_Shift_Ins INS - - CATGT novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 - - . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Ins INS 35822744 35822745 TOP2A 17 - - CATGT 30 TP53 7157 hgsc.bcm.edu 36 17 7518257 7518257 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G G A G G Unknown Valid Somatic Phase_IV Capture Sanger_PCR_WGA . . SOLID Baylor Missense_Mutation SNP 7518257 7518257 TP53 17 G G A 43 TRNAU1AP 54952 hgsc.bcm.edu 36 1 28770319 28770319 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 G G . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 28770319 28770319 TRNAU1AP 1 G G C 34 TSEN34 79042 hgsc.bcm.edu 36 19 59387909 59387909 + Silent SNP T T C novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 T T . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Silent SNP 59387909 59387909 TSEN34 19 T T C 53 UBL7 84993 hgsc.bcm.edu 36 15 72530914 72530914 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 C C . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Missense_Mutation SNP 72530914 72530914 UBL7 15 C C T 18 ZDBF2 57683 hgsc.bcm.edu 36 2 206883093 206883093 + Frame_Shift_Del DEL A A - novel Unknown TCGA-23-1028-01 TCGA-23-1028-10 A A . . . . Unknown Unknown Somatic Phase_IV Capture Unknown . . SOLID Baylor Frame_Shift_Del DEL 206883093 206883093 ZDBF2 2 A A - 5