Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context KIAA2013 90231 broad.mit.edu 36 1 11905787 11905787 + Silent SNP C C T novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 11905787 11905787 KIAA2013 1 C C T 26 SORCS3 22986 broad.mit.edu 36 10 106592572 106592572 + Silent SNP C C T novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 106592572 106592572 SORCS3 10 C C T 29 MUC5B 727897 broad.mit.edu 36 11 1222407 1222407 + Missense_Mutation SNP T T C novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1222407 1222407 MUC5B 11 T T C 58 KRT72 140807 broad.mit.edu 36 12 51279125 51279125 + Silent SNP G G T novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 51279125 51279125 KRT72 12 G G T 47 NTN4 59277 broad.mit.edu 36 12 94628389 94628389 + Missense_Mutation SNP C C T novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 94628389 94628389 NTN4 12 C C T 29 UTP14C 9724 broad.mit.edu 36 13 51501443 51501443 + Missense_Mutation SNP G G A novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 51501443 51501443 UTP14C 13 G G A 46 CGNL1 84952 broad.mit.edu 36 15 55518324 55518324 + Missense_Mutation SNP C C T novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55518324 55518324 CGNL1 15 C C T 23 TP53 7157 broad.mit.edu 36 17 7519015 7519015 + Splice_Site_SNP SNP C C T novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Splice_Site_SNP SNP 7519015 7519015 TP53 17 C C T 24 POLDIP2 26073 broad.mit.edu 36 17 23704860 23704860 + Missense_Mutation SNP G G C novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23704860 23704860 POLDIP2 17 G G C 36 FEM1A 55527 broad.mit.edu 36 19 4744804 4744804 + Silent SNP C C G novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 4744804 4744804 FEM1A 19 C C G 22 CCDC151 115948 broad.mit.edu 36 19 11398566 11398566 + Missense_Mutation SNP C C A novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11398566 11398566 CCDC151 19 C C A 32 CYP4F12 66002 broad.mit.edu 36 19 15655522 15655522 + Missense_Mutation SNP C C G novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15655522 15655522 CYP4F12 19 C C G 17 IL1F8 27177 broad.mit.edu 36 2 113503037 113503037 + Missense_Mutation SNP G G C novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113503037 113503037 IL1F8 2 G G C 33 GGTLC1 92086 broad.mit.edu 36 20 23914531 23914531 + Missense_Mutation SNP C C T novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23914531 23914531 GGTLC1 20 C C T 23 EFCAB6 64800 broad.mit.edu 36 22 42327310 42327310 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 42327310 42327310 EFCAB6 22 G G A 46 MYRIP 25924 broad.mit.edu 36 3 40261045 40261045 + Silent SNP G G A novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 40261045 40261045 MYRIP 3 G G A 39 CEP97 79598 broad.mit.edu 36 3 102959275 102959275 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 102959275 102959275 CEP97 3 C C T 31 SI 6476 broad.mit.edu 36 3 166218074 166218074 + Missense_Mutation SNP C C A rs41273567 Unknown TCGA-24-0970-01 TCGA-24-0970-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 166218074 166218074 SI 3 C C A 18 CCDC39 339829 broad.mit.edu 36 3 181831983 181831983 + Missense_Mutation SNP C C G novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 181831983 181831983 CCDC39 3 C C G 32 PCDHAC1 56135 broad.mit.edu 36 5 140288470 140288470 + Silent SNP G G A novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 140288470 140288470 PCDHAC1 5 G G A 40 EPHA7 2045 broad.mit.edu 36 6 94031079 94031079 + Missense_Mutation SNP T T C novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 T C T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 94031079 94031079 EPHA7 6 T T C 58 RSPH10B 222967 broad.mit.edu 36 7 6764015 6764015 + Missense_Mutation SNP G G A novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 6764015 6764015 RSPH10B 7 G G A 38 KIAA1324L 222223 broad.mit.edu 36 7 86394155 86394155 + Missense_Mutation SNP T T C novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 86394155 86394155 KIAA1324L 7 T T C 57 ADAM22 53616 broad.mit.edu 36 7 87600175 87600175 + Silent SNP G G A novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 87600175 87600175 ADAM22 7 G G A 40 SMURF1 57154 broad.mit.edu 36 7 98473957 98473957 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 98473957 98473957 SMURF1 7 C C A 32 MUC17 140453 broad.mit.edu 36 7 100471955 100471955 + Missense_Mutation SNP G G T novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100471955 100471955 MUC17 7 G G T 44 PXDNL 137902 broad.mit.edu 36 8 52484641 52484641 + Missense_Mutation SNP G G C novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52484641 52484641 PXDNL 8 G G C 41 MUC5B 727897 broad.mit.edu 36 11 1226973 1226978 + In_Frame_Del DEL CCACGG - CCACGG novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 1226973 1226978 MUC5B 11 CCACGG - CCACGG 18 LMTK3 114783 broad.mit.edu 36 19 53686569 53686570 + Frame_Shift_Ins INS - G - novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 53686569 53686570 LMTK3 19 - G - 31 SSPO 23145 broad.mit.edu 36 7 149134850 149134853 + Frame_Shift_Del DEL GATA - GATA novel Unknown TCGA-24-0970-01 TCGA-24-0970-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 149134850 149134853 SSPO 7 GATA - GATA 41