Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context KRTAP5-3 387266 genome.wustl.edu 36 11 1585657 1585657 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1585657 1585657 KRTAP5-3 11 C C A 24 CSMD1 64478 genome.wustl.edu 36 8 2951467 2951467 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2951467 2951467 CSMD1 8 T T A 63 GPR78 27201 genome.wustl.edu 36 4 8633792 8633792 + Silent SNP C T T novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 8633792 8633792 GPR78 4 C T T 24 TAS2R50 259296 genome.wustl.edu 36 12 11030719 11030719 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 11030719 11030719 TAS2R50 12 G G C 36 SGCZ 137868 genome.wustl.edu 36 8 13992458 13992458 + Silent SNP A A T novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 13992458 13992458 SGCZ 8 A A T 3 SLCO1A2 6579 genome.wustl.edu 36 12 21363579 21363579 + Silent SNP C C T novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 21363579 21363579 SLCO1A2 12 C C T 23 GPLD1 2822 genome.wustl.edu 36 6 24570970 24570970 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24570970 24570970 GPLD1 6 A A G 4 SVIL 6840 genome.wustl.edu 36 10 29813712 29813712 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29813712 29813712 SVIL 10 T T A 59 C5orf22 55322 genome.wustl.edu 36 5 31574387 31574387 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31574387 31574387 C5orf22 5 C C G 20 DCLK1 9201 genome.wustl.edu 36 13 35322904 35322904 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35322904 35322904 DCLK1 13 G G A 39 KIAA1755 85449 genome.wustl.edu 36 20 36288975 36288975 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36288975 36288975 KIAA1755 20 C C T 19 PIK3C3 5289 genome.wustl.edu 36 18 37854608 37854608 + Silent SNP C C A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 37854608 37854608 PIK3C3 18 C C A 32 ZBTB32 27033 genome.wustl.edu 36 19 40899342 40899342 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 40899342 40899342 ZBTB32 19 C C A 30 LAMB2 3913 genome.wustl.edu 36 3 49134427 49134427 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49134427 49134427 LAMB2 3 C C G 23 SMC1A 8243 genome.wustl.edu 36 X 53440132 53440132 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 53440132 53440132 SMC1A 23 A A C 11 OS9 10956 genome.wustl.edu 36 12 56400183 56400183 + Silent SNP C C A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 56400183 56400183 OS9 12 C C A 29 SIGLEC12 89858 genome.wustl.edu 36 19 56693200 56693200 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56693200 56693200 SIGLEC12 19 A A G 6 ZNF615 284370 genome.wustl.edu 36 19 57189366 57189366 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 57189366 57189366 ZNF615 19 G G A 48 LILRB4 11006 genome.wustl.edu 36 19 59871015 59871015 + Nonsense_Mutation SNP A A T novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 59871015 59871015 LILRB4 19 A A T 1 TRIM23 373 genome.wustl.edu 36 5 64945746 64945746 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 64945746 64945746 TRIM23 5 G G A 40 MIER1 57708 genome.wustl.edu 36 1 67184458 67184458 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67184458 67184458 MIER1 1 A A G 8 GLCE 26035 genome.wustl.edu 36 15 67347845 67347845 + Silent SNP G G T novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 67347845 67347845 GLCE 15 G G T 47 CPA6 57094 genome.wustl.edu 36 8 68502840 68502840 + Silent SNP C C T novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 68502840 68502840 CPA6 8 C C T 19 THSD4 79875 genome.wustl.edu 36 15 69837379 69837379 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 69837379 69837379 THSD4 15 T T G 55 DUPD1 338599 genome.wustl.edu 36 10 76488091 76488091 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 76488091 76488091 DUPD1 10 T T C 57 SPRY2 10253 genome.wustl.edu 36 13 79809658 79809658 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 79809658 79809658 SPRY2 13 C C T 19 ABCB4 5244 genome.wustl.edu 36 7 86873648 86873648 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 86873648 86873648 ABCB4 7 A A C 5 PRDM7 11105 genome.wustl.edu 36 16 88655965 88655965 + Silent SNP C C T novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 88655965 88655965 PRDM7 16 C C T 26 RAGE 5891 genome.wustl.edu 36 14 101768721 101768721 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101768721 101768721 RAGE 14 T T G 63 BAG5 9529 genome.wustl.edu 36 14 103096679 103096679 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 103096679 103096679 BAG5 14 C C A 24 OR13D1 286365 genome.wustl.edu 36 9 106497444 106497444 + Silent SNP G G A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 106497444 106497444 OR13D1 9 G G A 42 FAM40A 85369 genome.wustl.edu 36 1 110389166 110389166 + Silent SNP G G A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 110389166 110389166 FAM40A 1 G G A 37 MLXIP 22877 genome.wustl.edu 36 12 121180101 121180101 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 121180101 121180101 MLXIP 12 A A G 5 ASAM 79827 genome.wustl.edu 36 11 122459124 122459124 + Silent SNP G G A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 122459124 122459124 ASAM 11 G G A 36 ASAP1 50807 genome.wustl.edu 36 8 131193526 131193526 + Silent SNP C C G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 131193526 131193526 ASAP1 8 C C G 30 ZNF185 7739 genome.wustl.edu 36 X 151889641 151889641 + Splice_Site_SNP SNP A A G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 151889641 151889641 ZNF185 23 A A G 7 NUP210L 91181 genome.wustl.edu 36 1 152285218 152285218 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 152285218 152285218 NUP210L 1 C C A 21 UAP1 6675 genome.wustl.edu 36 1 160835707 160835707 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 160835707 160835707 UAP1 1 A A G 12 SERPINC1 462 genome.wustl.edu 36 1 172139768 172139768 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 172139768 172139768 SERPINC1 1 G G A 37 PLD1 5337 genome.wustl.edu 36 3 172820934 172820934 + Silent SNP T T C novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 172820934 172820934 PLD1 3 T T C 53 PAPPA2 60676 genome.wustl.edu 36 1 174935189 174935189 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 174935189 174935189 PAPPA2 1 A A G 12 NLRP3 114548 genome.wustl.edu 36 1 245673982 245673982 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 245673982 245673982 NLRP3 1 C C G 24 ABCB11 8647 genome.wustl.edu 36 2 169509662 169509662 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 A A A G A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 169509662 169509662 ABCB11 2 A A G 15 SLIT2 9353 genome.wustl.edu 36 4 20228322 20228322 + Silent SNP G A G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 G G A G G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Silent SNP 20228322 20228322 SLIT2 4 G A G 34 TP53 7157 genome.wustl.edu 36 17 7517577 7517577 + Splice_Site_SNP SNP C C G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C Verified Unknown Somatic Phase_III PCR Unknown dbGAP Sanger_PCR_WGA WashU Splice_Site_SNP SNP 7517577 7517577 TP53 17 C C G 18 SPRYD5 84767 genome.wustl.edu 36 11 55409881 55409881 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55409881 55409881 SPRYD5 11 A A T 11 ANO8 57719 genome.wustl.edu 36 19 17296902 17296902 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17296902 17296902 ANO8 19 C C G 24 PATZ1 23598 genome.wustl.edu 36 22 30061753 30061753 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1436-01 TCGA-24-1436-10 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30061753 30061753 PATZ1 22 G G A 38 CDC5L 988 genome.wustl.edu 36 6 44502419 44502419 + Frame_Shift_Del DEL T T - Unknown TCGA-24-1436-01 TCGA-24-1436-10 T T T - T T Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 44502419 44502419 CDC5L 6 T T - 54