Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context MINK1 50488 genome.wustl.edu 36 17 4740635 4740636 + Frame_Shift_Ins INS - - G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 4740635 4740636 MINK1 17 - - G 59 CHD5 26038 genome.wustl.edu 36 1 6129510 6129511 + Frame_Shift_Ins INS - - G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 6129510 6129511 CHD5 1 - - G 59 MYH13 8735 genome.wustl.edu 36 17 10156792 10156793 + Frame_Shift_Ins INS - - T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 10156792 10156793 MYH13 17 - - T 36 GALNTL2 117248 genome.wustl.edu 36 3 16192065 16192066 + Frame_Shift_Ins INS - - G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 16192065 16192066 GALNTL2 3 - - G 55 LOC728927 728927 genome.wustl.edu 36 7 63446220 63446221 + Frame_Shift_Del DEL TG TG - novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 TG TG Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 63446220 63446221 LOC728927 7 TG TG - 55 PSD 5662 genome.wustl.edu 36 10 104166563 104166564 + Frame_Shift_Ins INS - - G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 104166563 104166564 PSD 10 - - G 11 LOC390424 390424 genome.wustl.edu 36 13 106114293 106114294 + Frame_Shift_Ins INS - - A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 106114293 106114294 LOC390424 13 - - A 53 CEP164 22897 genome.wustl.edu 36 11 116727895 116727896 + Frame_Shift_Ins INS - - C novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 116727895 116727896 CEP164 11 - - C 10 ACTL8 81569 genome.wustl.edu 36 1 18025595 18025595 + Silent SNP G G A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 18025595 18025595 ACTL8 1 G G A 41 IVNS1ABP 10625 genome.wustl.edu 36 1 183533919 183533919 + Silent SNP C C G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 183533919 183533919 IVNS1ABP 1 C C G 30 ARID4B 51742 genome.wustl.edu 36 1 233411552 233411552 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 233411552 233411552 ARID4B 1 T T C 52 KMO 8564 genome.wustl.edu 36 1 239820012 239820012 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 239820012 239820012 KMO 1 T T G 50 NHLRC2 374354 genome.wustl.edu 36 10 115658198 115658198 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 115658198 115658198 NHLRC2 10 G G A 45 KIAA1462 57608 genome.wustl.edu 36 10 30357354 30357354 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 30357354 30357354 KIAA1462 10 C C A 31 KIF5B 3799 genome.wustl.edu 36 10 32369383 32369383 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32369383 32369383 KIF5B 10 C C T 29 RASSF4 83937 genome.wustl.edu 36 10 44787207 44787207 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44787207 44787207 RASSF4 10 G G A 48 C11orf40 143501 genome.wustl.edu 36 11 4551264 4551264 + Silent SNP A A G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 4551264 4551264 C11orf40 11 A A G 16 OR4C16 219428 genome.wustl.edu 36 11 55096435 55096435 + Nonsense_Mutation SNP A A T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 55096435 55096435 OR4C16 11 A A T 9 OR10Q1 219960 genome.wustl.edu 36 11 57752498 57752498 + Silent SNP G G A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 57752498 57752498 OR10Q1 11 G G A 38 FERMT3 83706 genome.wustl.edu 36 11 63745130 63745130 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 63745130 63745130 FERMT3 11 C C T 27 MAML2 84441 genome.wustl.edu 36 11 95465303 95465303 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 95465303 95465303 MAML2 11 T T C 51 CNTN5 53942 genome.wustl.edu 36 11 99567102 99567102 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99567102 99567102 CNTN5 11 C C G 24 GCN1L1 10985 genome.wustl.edu 36 12 119080063 119080063 + Silent SNP G G A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 119080063 119080063 GCN1L1 12 G G A 47 WBP11 51729 genome.wustl.edu 36 12 14838057 14838057 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14838057 14838057 WBP11 12 T T C 50 HOXC4 3221 genome.wustl.edu 36 12 52734193 52734193 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 52734193 52734193 HOXC4 12 G G C 43 TMTC2 160335 genome.wustl.edu 36 12 81605516 81605516 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 81605516 81605516 TMTC2 12 G G T 34 PDS5B 23047 genome.wustl.edu 36 13 32228035 32228035 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32228035 32228035 PDS5B 13 G G T 47 GAN 8139 genome.wustl.edu 36 16 79942739 79942739 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 79942739 79942739 GAN 16 T T C 52 HSD17B2 3294 genome.wustl.edu 36 16 80689396 80689396 + Missense_Mutation SNP C T T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 80689396 80689396 HSD17B2 16 C T T 26 BECN1 8678 genome.wustl.edu 36 17 38216443 38216443 + Missense_Mutation SNP T C C novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 T T C C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38216443 38216443 BECN1 17 T C C 58 BCAS3 54828 genome.wustl.edu 36 17 56516669 56516669 + Missense_Mutation SNP A T T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 A A T T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56516669 56516669 BCAS3 17 A T T 12 TP53 7157 genome.wustl.edu 36 17 7518290 7518290 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7518290 7518290 TP53 17 T T C 60 LOC649299 649299 genome.wustl.edu 36 19 21208075 21208075 + Silent SNP G G C novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 21208075 21208075 LOC649299 19 G G C 48 THOP1 7064 genome.wustl.edu 36 19 2745857 2745857 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2745857 2745857 THOP1 19 G G A 37 C19orf48 84798 genome.wustl.edu 36 19 55993446 55993446 + Silent SNP C C T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 55993446 55993446 C19orf48 19 C C T 26 FHL2 2274 genome.wustl.edu 36 2 105356556 105356556 + Silent SNP G G A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 105356556 105356556 FHL2 2 G G A 36 NEB 4703 genome.wustl.edu 36 2 152117480 152117480 + Silent SNP A A G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 152117480 152117480 NEB 2 A A G 16 TTN 7273 genome.wustl.edu 36 2 179287436 179287436 + Silent SNP G G A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 179287436 179287436 TTN 2 G G A 45 CCDC141 285025 genome.wustl.edu 36 2 179426577 179426577 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179426577 179426577 CCDC141 2 T T A 50 TUBA4A 7277 genome.wustl.edu 36 2 219824670 219824670 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 219824670 219824670 TUBA4A 2 C C T 31 MSH6 2956 genome.wustl.edu 36 2 47881758 47881758 + Nonsense_Mutation SNP C C G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 47881758 47881758 MSH6 2 C C G 17 EPB41L1 2036 genome.wustl.edu 36 20 34225224 34225224 + Silent SNP C C T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 34225224 34225224 EPB41L1 20 C C T 19 SNX25 83891 genome.wustl.edu 36 4 186504684 186504684 + Splice_Site_SNP SNP G G A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 186504684 186504684 SNX25 4 G G A 36 CAMK4 814 genome.wustl.edu 36 5 110758356 110758356 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 110758356 110758356 CAMK4 5 A A G 13 COMMD10 51397 genome.wustl.edu 36 5 115456227 115456227 + Silent SNP C C T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 115456227 115456227 COMMD10 5 C C T 29 CDX1 1044 genome.wustl.edu 36 5 149542564 149542564 + Silent SNP C C T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 149542564 149542564 CDX1 5 C C T 23 IRX1 79192 genome.wustl.edu 36 5 3652809 3652809 + Silent SNP C C T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 3652809 3652809 IRX1 5 C C T 23 VARS2 57176 genome.wustl.edu 36 6 31000125 31000125 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31000125 31000125 VARS2 6 G G A 40 MSH5 4439 genome.wustl.edu 36 6 31823189 31823189 + Splice_Site_SNP SNP G G T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 31823189 31823189 MSH5 6 G G T 44 VPS52 6293 genome.wustl.edu 36 6 33339243 33339243 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33339243 33339243 VPS52 6 G G C 48 RIOK1 83732 genome.wustl.edu 36 6 7359603 7359603 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7359603 7359603 RIOK1 6 A A G 10 LRRC17 10234 genome.wustl.edu 36 7 102367234 102367234 + Silent SNP C C T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 102367234 102367234 LRRC17 7 C C T 18 ZNF706 51123 genome.wustl.edu 36 8 102283023 102283023 + Nonsense_Mutation SNP G G T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 102283023 102283023 ZNF706 8 G G T 46 CSMD3 114788 genome.wustl.edu 36 8 113632224 113632224 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113632224 113632224 CSMD3 8 C C G 22 PHF20L1 51105 genome.wustl.edu 36 8 133885459 133885459 + Nonsense_Mutation SNP G G T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 133885459 133885459 PHF20L1 8 G G T 47 C8orf73 642475 genome.wustl.edu 36 8 144725499 144725499 + Splice_Site_SNP SNP C C G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 144725499 144725499 C8orf73 8 C C G 24 uc010lvw.1 genome.wustl.edu 36 8 36780606 36780606 + Silent SNP G G A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 36780606 36780606 uc010lvw.1 8 G G A 40 AKNA 80709 genome.wustl.edu 36 9 116178437 116178437 + Missense_Mutation SNP C G G novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 116178437 116178437 AKNA 9 C G G 22 LOC645937 645937 genome.wustl.edu 36 9 89749051 89749051 + Silent SNP G A A novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 89749051 89749051 LOC645937 9 G A A 40 DMD 1756 genome.wustl.edu 36 X 32493899 32493899 + Silent SNP T T C novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 32493899 32493899 DMD 23 T T C 64 SMC1A 8243 genome.wustl.edu 36 X 53440141 53440141 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 53440141 53440141 SMC1A 23 C C T 19 KIAA2022 340533 genome.wustl.edu 36 X 73882145 73882145 + Silent SNP C C T novel Unknown TCGA-24-1464-01 TCGA-24-1464-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 73882145 73882145 KIAA2022 23 C C T 22